Citrus Sinensis ID: 027503

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCCYK
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MGDSYDEECDYLFKAVMigdsavgksnllsrfardefrldskptigvefAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVgnksdlthsrevneEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAkmndktatsncnnlgggkeiinIDHEVtatkqssccyk
Flexible Loop (DISEMBL)
MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRfardefrldskptigvefayrnirvgdKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVgnksdlthsrevneEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEvtatkqssccyk
Low Complexity Region (SEG)
MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCCYK
Disordered region (IsUnstruct)
*******ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL***********KILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVT**********
Disordered Region (DISOPRED)
*****DE**DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ*****************************************SSCCY*
Disordered Region (DISEMBL)
MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTA*********
Disordered Region (DISPRO)
*****DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCCYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q0WQN4	229	Ras-related protein RABA6	yes	no	0.986	0.956	0.722	1e-88
Q9C9U7	233	Ras-related protein RABA6	no	no	0.986	0.939	0.679	9e-88
Q9FK68	216	Ras-related protein RABA1	no	no	0.936	0.962	0.562	5e-66
P40393	217	Ras-related protein RIC2	no	no	0.936	0.958	0.553	2e-65
Q9SN35	214	Ras-related protein RABA1	no	no	0.927	0.962	0.558	3e-65
Q39434	214	Ras-related protein Rab2B	N/A	no	0.954	0.990	0.55	7e-65
Q9FJH0	217	Ras-related protein RABA1	no	no	0.936	0.958	0.555	1e-64
Q01111	218	Ras-related protein YPT3	N/A	no	0.945	0.963	0.562	2e-64
Q40521	217	Ras-related protein Rab11	N/A	no	0.936	0.958	0.553	2e-64
Q9LNW1	214	Ras-related protein RABA2	no	no	0.954	0.990	0.554	7e-64

>sp|Q0WQN4|RAA6B_ARATH Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 8/227 (3%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           +SYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGV+FAYRN+RVGDK IK
Sbjct: 4   ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N +KWL ELR F S    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK-S 181
           VGNKSDL  SREV EEEGK LAE+EGLYF+ETSA++N NVE+AFL MI +IH+   QK  
Sbjct: 124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFLSMIGRIHEVLTQKIV 183

Query: 182 LCAKMN-DKTATSNCNNLGGGKEIINIDHEVTATKQ-----SSCCYK 222
           L  ++N D    SN   +  GKEI+NI HEVTAT+      S+CCYK
Sbjct: 184 LDNRLNGDGNNESNGAVVPPGKEIVNI-HEVTATRPLSTSLSNCCYK 229

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9U7|RAA6A_ARATH Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1

 Score =  322 bits (826), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 186/231 (80%), Gaps = 12/231 (5%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           D+Y+EECDYLFKAV+IGDSAVGKSNLLSRF++DEFR DSKPTIGVEFAYRN+ VGDK+IK
Sbjct: 4   DTYEEECDYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N KKWL ELR+F +    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           VGNKSDL  SREV E+EGK LAE+EGLYF+ETSA++N+NVE+AFL MI +IH+   Q+  
Sbjct: 124 VGNKSDLRQSREVEEDEGKTLAESEGLYFLETSALENVNVEEAFLVMIGRIHEVVTQRIA 183

Query: 183 CAKMNDKTATSNCNNLGG------GKEIINIDHEVTATKQ-----SSCCYK 222
               ++  AT + N  G       GKEI+NI HEVTAT+      S+CC+K
Sbjct: 184 SENKSNGAATPHINGNGNGTVLPVGKEIVNI-HEVTATQPLLSSSSNCCFK 233

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1

 Score =  250 bits (638), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 155/215 (72%), Gaps = 7/215 (3%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF ++EF L+SK TIGVEFA R++ V DK+IKAQI
Sbjct: 7   DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQI 66

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR +TFEN + WL+ELR      + ++LVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGN 126

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           KSDL H   V  E+ K  AE E LYFMETSA++  NVE+AF +++ QIH    +K++   
Sbjct: 127 KSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAM--- 183

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                A S   N+    + I+I  +V+A K+  CC
Sbjct: 184 ----EAASESANVPSKGDKIDIGKDVSAVKKGGCC 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P40393|RIC2_ORYSJ Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 160/215 (74%), Gaps = 7/215 (3%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           +++ DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+++V  K++KAQI
Sbjct: 8   EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQI 67

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR +TFEN ++WL+ELR+     + ++LVGN
Sbjct: 68  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           KSDL H   V  +EGK  AE E LYFMETSA+++ NVE+AF +++ QI++   ++S+   
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSV--- 184

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                A  +  +  G  E INI  +V+A K+  CC
Sbjct: 185 ----EAGDDAGSGPGKGEKINIKDDVSAVKKGGCC 215

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 159/215 (73%), Gaps = 9/215 (4%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D++ DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R++ V +K+IKAQI
Sbjct: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQI 66

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR +TFEN ++WLRELR+     + ++LVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGN 126

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           KSDL H   V  E+ K  AE E LYFMETSA+++ NVE+AF +++ QI+    +K++   
Sbjct: 127 KSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAM--- 183

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                A  +  N+    E I++D  V+A K++ CC
Sbjct: 184 ----EAGEDSGNVPSKGEKIDVD--VSAVKKTGCC 212

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1

 Score =  246 bits (629), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 161/220 (73%), Gaps = 8/220 (3%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M +  D E DYLFK V+IGDS VGKSN+LSRF R+EF L+SK TIGVEFA R ++V  K 
Sbjct: 1   MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +KAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT+R TF+N ++WLRELR+   S + I
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           ++ GNKSDL H R V+EE+G+ LAE EGL F+ETSA++ +N+E AF  ++ +I+    +K
Sbjct: 121 MMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKK 180

Query: 181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           +L A+          +NL G    IN+  + +A ++ SCC
Sbjct: 181 ALAAQ-------EASSNLPGQGTTINV-ADASANQRRSCC 212

Beta vulgaris (taxid: 161934)

>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/216 (55%), Positives = 161/216 (74%), Gaps = 8/216 (3%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I V DK++KAQI
Sbjct: 7   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQI 66

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TFEN ++WL+ELR+   + + I+ VGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGN 126

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K+DL H R V+ E+ K  AE E  +FMETSA++++NVE+AF ++++QI++   +K+L   
Sbjct: 127 KADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKAL--D 184

Query: 186 MNDKTATSNCNNLGGGKEI-INIDHEVTATKQSSCC 220
           + D  A      L  G+ I +    +V+A K+  CC
Sbjct: 185 IGDDPAA-----LPKGQTINVGSKDDVSAVKKVGCC 215

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01111|YPT3_NICPL Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 161/215 (74%), Gaps = 5/215 (2%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF ++EF L+SK TIGVEFA +++ + +K+IKAQI
Sbjct: 7   DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQI 66

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYD+TR  T+EN  +WL+ELR+     + ++L+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           KSDL H   V+ +E K LAE EGLYFMETSA++  NVE+AF + + QI++   +K++ A 
Sbjct: 127 KSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEA- 185

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
             D+ ATS+    G   E INI  E ++ K+  CC
Sbjct: 186 -GDEGATSSAPPKG---ETINIKDEGSSWKKFGCC 216

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 161/215 (74%), Gaps = 7/215 (3%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           +++ DYLFK V+IGDS VGKSNLLSRF+R+EF L+SK TIGVEFA R+IRV DK++KAQI
Sbjct: 8   EDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQI 67

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GAL+VYDITR  TFEN ++WL+ELR+     + I+LVGN
Sbjct: 68  WDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGN 127

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K+DL H R V+ E+ K  AE E  +FMETSA+++LNVE+AF +++ +I++   +K+L   
Sbjct: 128 KADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVG 187

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
            +D  A      +  GK+      +V+A K+  CC
Sbjct: 188 -DDPAALPKGQTINVGKD------DVSAVKKVGCC 215

Nicotiana tabacum (taxid: 4097)

>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2

 Score =  243 bits (620), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 157/220 (71%), Gaps = 8/220 (3%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M +  D E DYLFK V+IGDS VGKSN+LSRF R+EF L+SK TIGVEFA R ++V  K 
Sbjct: 1   MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +KAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT+R TFEN  +WLRELR+   S + I
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVI 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           ++ GNKSDL H R V +E+G+ LAE EGL F+ETSA++  N+E AF  ++++I+    +K
Sbjct: 121 MMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKK 180

Query: 181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           +L A+           NL G    INI  + +AT +  CC
Sbjct: 181 ALAAQ-------EAAGNLPGQGTAINIS-DSSATNRKGCC 212

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
225456136	218	PREDICTED: ras-related protein RABA6b [V	0.972	0.990	0.791	5e-97
224135525	222	predicted protein [Populus trichocarpa]	0.986	0.986	0.790	6e-97
255583461	222	protein with unknown function [Ricinus c	0.941	0.941	0.771	1e-87
145335857	229	RAB GTPase homolog A6B [Arabidopsis thal	0.986	0.956	0.722	7e-87
110737235	229	hypothetical protein [Arabidopsis thalia	0.986	0.956	0.722	8e-87
15219515	233	RAB GTPase A6a [Arabidopsis thaliana] gi	0.986	0.939	0.679	5e-86
297839229	232	hypothetical protein ARALYDRAFT_476500 [	0.986	0.943	0.682	5e-86
356524680	218	PREDICTED: ras-related protein RABA6a-li	0.963	0.981	0.737	1e-85
356512992	217	PREDICTED: ras-related protein RABA6a-li	0.963	0.986	0.727	3e-85
297850210	229	predicted protein [Arabidopsis lyrata su	0.986	0.956	0.704	6e-85

>gi|225456136|ref|XP_002281955.1| PREDICTED: ras-related protein RABA6b [Vitis vinifera] gi|297734313|emb|CBI15560.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 175/221 (79%), Positives = 194/221 (87%), Gaps = 5/221 (2%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
            DS+D+ECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGVEFAYRNI+VGDKLI
Sbjct: 3   ADSFDDECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIKVGDKLI 62

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
           KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN KKWLRELR+F    M IV
Sbjct: 63  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENLKKWLRELRDFGKPDMVIV 122

Query: 122 LVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
           LVGNKSDL HSREV+EEEGK LAETEGL FMETSA++NLNVE+AFL MI +IH+ T QK+
Sbjct: 123 LVGNKSDLGHSREVDEEEGKTLAETEGLCFMETSALENLNVEEAFLHMITKIHEVTSQKN 182

Query: 182 LCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCCYK 222
           L AK+N+         L  GKEII++DHEV+ATKQSSCC +
Sbjct: 183 LEAKLNEPVKP-----LIIGKEIIHVDHEVSATKQSSCCSR 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135525|ref|XP_002322095.1| predicted protein [Populus trichocarpa] gi|222869091|gb|EEF06222.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 174/220 (79%), Positives = 194/220 (88%), Gaps = 1/220 (0%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M DSYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGVEFAYRNIRVGDKL
Sbjct: 1   MADSYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIRVGDKL 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATF+N KKWL ELR+F SS M +
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFDNVKKWLHELRDFGSSDMVV 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           VLVGNKSD++H REV+E++GK LAETE LYFMETSA++NLNVE+AF+QMI +IH+   QK
Sbjct: 121 VLVGNKSDISHLREVDEDDGKNLAETEALYFMETSALENLNVEEAFMQMITRIHEIASQK 180

Query: 181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           SL AK N+ T  S    L  GKE+INID EV+ATKQ+S C
Sbjct: 181 SLEAKKNE-TTISTIKALPVGKEVINIDDEVSATKQASYC 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583461|ref|XP_002532489.1| protein with unknown function [Ricinus communis] gi|223527788|gb|EEF29888.1| protein with unknown function [Ricinus communis]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/210 (77%), Positives = 179/210 (85%), Gaps = 1/210 (0%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           MGDSYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGVEFAYRNIRV DKL
Sbjct: 1   MGDSYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIRVADKL 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATF+N KKWL ELRE+ +  M +
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFDNVKKWLTELREYGNPEMVV 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           VL GNK DL+H+REV EEEGK LAETEGL FMETSA++NLNVE+AFL+MI +IH  T QK
Sbjct: 121 VLAGNKCDLSHTREVGEEEGKNLAETEGLCFMETSALENLNVEEAFLEMITKIHAITSQK 180

Query: 181 SLCAKMND-KTATSNCNNLGGGKEIINIDH 209
           SL  ++ D    TS    L  GKE++ ID 
Sbjct: 181 SLEVRLKDANNITSKTVALPVGKEVLIIDE 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335857|ref|NP_173258.2| RAB GTPase homolog A6B [Arabidopsis thaliana] gi|332320574|sp|Q0WQN4.2|RAA6B_ARATH RecName: Full=Ras-related protein RABA6b; Short=AtRABA6b gi|332191565|gb|AEE29686.1| RAB GTPase homolog A6B [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 8/227 (3%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           +SYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGV+FAYRN+RVGDK IK
Sbjct: 4   ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N +KWL ELR F S    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK-S 181
           VGNKSDL  SREV EEEGK LAE+EGLYF+ETSA++N NVE+AFL MI +IH+   QK  
Sbjct: 124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFLSMIGRIHEVLTQKIV 183

Query: 182 LCAKMN-DKTATSNCNNLGGGKEIINIDHEVTATKQ-----SSCCYK 222
           L  ++N D    SN   +  GKEI+NI HEVTAT+      S+CCYK
Sbjct: 184 LDNRLNGDGNNESNGAVVPPGKEIVNI-HEVTATRPLSTSLSNCCYK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737235|dbj|BAF00565.1| hypothetical protein [Arabidopsis thaliana]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 8/227 (3%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           +SYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGV+FAYRN+RVGDK IK
Sbjct: 4   ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N +KWL ELR F S    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK-S 181
           VGNKSDL  SREV EEEGK LAE+EGLYF+ETSA++N NVE+AFL MI +IH+   QK  
Sbjct: 124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFLSMIGRIHEVLTQKIV 183

Query: 182 LCAKMN-DKTATSNCNNLGGGKEIINIDHEVTATKQ-----SSCCYK 222
           L  ++N D    SN   +  GKEI+NI HEVTAT+      S+CCYK
Sbjct: 184 LDNRLNGDGNNESNGAVVPPGKEIVNI-HEVTATRPLGTSLSNCCYK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219515|ref|NP_177505.1| RAB GTPase A6a [Arabidopsis thaliana] gi|75333591|sp|Q9C9U7.1|RAA6A_ARATH RecName: Full=Ras-related protein RABA6a; Short=AtRABA6a gi|12324223|gb|AAG52089.1|AC012679_27 putative ras-related GTP-binding protein; 14977-15931 [Arabidopsis thaliana] gi|21537030|gb|AAM61371.1| putative ras-related GTP-binding protein [Arabidopsis thaliana] gi|332197367|gb|AEE35488.1| RAB GTPase A6a [Arabidopsis thaliana]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 186/231 (80%), Gaps = 12/231 (5%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           D+Y+EECDYLFKAV+IGDSAVGKSNLLSRF++DEFR DSKPTIGVEFAYRN+ VGDK+IK
Sbjct: 4   DTYEEECDYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N KKWL ELR+F +    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           VGNKSDL  SREV E+EGK LAE+EGLYF+ETSA++N+NVE+AFL MI +IH+   Q+  
Sbjct: 124 VGNKSDLRQSREVEEDEGKTLAESEGLYFLETSALENVNVEEAFLVMIGRIHEVVTQRIA 183

Query: 183 CAKMNDKTATSNCNNLGG------GKEIINIDHEVTATKQ-----SSCCYK 222
               ++  AT + N  G       GKEI+NI HEVTAT+      S+CC+K
Sbjct: 184 SENKSNGAATPHINGNGNGTVLPVGKEIVNI-HEVTATQPLLSSSSNCCFK 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839229|ref|XP_002887496.1| hypothetical protein ARALYDRAFT_476500 [Arabidopsis lyrata subsp. lyrata] gi|297333337|gb|EFH63755.1| hypothetical protein ARALYDRAFT_476500 [Arabidopsis lyrata subsp. lyrata]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 187/230 (81%), Gaps = 11/230 (4%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           DSY+EECDYLFKAV+IGDSAVGKSNLLSRF++DEFR DSKPTIGVEFAYRN+ VGDK+IK
Sbjct: 4   DSYEEECDYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N KKWL ELR+F +    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           VGNKSDL  SREV E+EGK LAE+EGL+F+ETSA++N+NVE+AFL MI +IH+   Q+  
Sbjct: 124 VGNKSDLRQSREVEEDEGKTLAESEGLFFLETSALENVNVEEAFLVMIGRIHEVVTQRIA 183

Query: 183 CAKMNDKTATSNCNNLGG------GKEIINIDHEVTATKQ----SSCCYK 222
               ++  AT++ N  G       GKEI+NI HEVTAT+     S+CC+K
Sbjct: 184 SDNKSNGAATAHINGNGNGTVLPVGKEIVNI-HEVTATQPLSSSSNCCFK 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524680|ref|XP_003530956.1| PREDICTED: ras-related protein RABA6a-like [Glycine max]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 185/221 (83%), Gaps = 7/221 (3%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M D++DEECDYLFKAV+IGDS VGKSNLLSRFA+DEFRLDSKPTIGVEFAYRNI+VGDKL
Sbjct: 1   MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKL 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IKAQIWDTAGQERFRAITSSYYRGALGA+LVYDI+RR+++EN  KWL ELREF    M +
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISRRSSYENVSKWLLELREFGGEDMVV 120

Query: 121 VLVGNKSDLT-HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
           VLVGNK DL   SREV++EEGK  AETEGL FMETSA++NLNVE+ FLQMI +I+  T Q
Sbjct: 121 VLVGNKCDLDGQSREVDKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQ 180

Query: 180 KSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           K+L AKM++K       NL  GKE I+I  EVTATKQSS C
Sbjct: 181 KNLAAKMDEKPI-----NLLNGKE-IHIADEVTATKQSSTC 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512992|ref|XP_003525198.1| PREDICTED: ras-related protein RABA6a-like [Glycine max]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/220 (72%), Positives = 182/220 (82%), Gaps = 6/220 (2%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M D++DEECDYLFKAV+IGDS VGKSN+LSRFA+DEFRLDSKPTIGVEFAYRNIRVGDKL
Sbjct: 1   MADAFDEECDYLFKAVLIGDSGVGKSNMLSRFAKDEFRLDSKPTIGVEFAYRNIRVGDKL 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IKAQIWDTAGQERFRAITSSYYRGALGA+LVYDI+ R+++EN  KWL ELREF    M +
Sbjct: 61  IKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISMRSSYENVSKWLLELREFGGEDMVV 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           VLVGNK DL  SREV +EEGK  AETEGL FMETSA++NLNVE+ FLQMI +I+  T QK
Sbjct: 121 VLVGNKCDLDESREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQK 180

Query: 181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           +L AKM ++       NL  GKE I+I  EVTATKQ+S C
Sbjct: 181 NLAAKMEEQPI-----NLLNGKE-IHIADEVTATKQTSTC 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850210|ref|XP_002892986.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338828|gb|EFH69245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 160/227 (70%), Positives = 179/227 (78%), Gaps = 8/227 (3%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           +SYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGV+FAYRN+RVGDK IK
Sbjct: 4   ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N  KWL ELR F S    +VL
Sbjct: 64  AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIGKWLSELRGFSSPETVVVL 123

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           VGNKSDL  SREV EEEGK LAE+EGLYF+ETSA++N NVE+AFL MI +IH+   QK+ 
Sbjct: 124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFLSMIGRIHEVLTQKTA 183

Query: 183 C--AKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSS-----CCYK 222
                  D    SN   +   KEI+NI HE TAT+  S     CCYK
Sbjct: 184 VDNRPNGDGNNESNGAVIPPSKEIVNI-HEFTATRPLSTSLPNCCYK 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2194095	229	RABA6b "RAB GTPase homolog A6B	0.986	0.956	0.722	1.2e-79
TAIR|locus:2027874	233	RABA6a "RAB GTPase homolog A6A	0.986	0.939	0.679	6.8e-79
TAIR|locus:2171943	216	RABA1c "RAB GTPase homolog A1C	0.936	0.962	0.562	4.5e-59
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	0.936	0.958	0.555	5.7e-59
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.927	0.962	0.558	7.3e-59
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.954	0.990	0.554	2.5e-58
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.945	0.967	0.572	1.1e-57
TAIR|locus:2057624	218	ArRABA1h "RAB GTPase homolog A	0.936	0.954	0.548	1.4e-57
TAIR|locus:2086290	217	RABA1g "RAB GTPase homolog A1G	0.936	0.958	0.541	2.2e-57
TAIR|locus:2124593	217	RABA1e "RAB GTPase homolog A1E	0.941	0.963	0.558	2.2e-57

TAIR|locus:2194095 RABA6b "RAB GTPase homolog A6B" [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 164/227 (72%), Positives = 186/227 (81%)

Query:     3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
             +SYDEECDYLFKAV+IGDSAVGKSNLLSRF+RDEFRLDSKPTIGV+FAYRN+RVGDK IK
Sbjct:     4 ESYDEECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIK 63

Query:    63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
             AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N +KWL ELR F S    +VL
Sbjct:    64 AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVL 123

Query:   123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS- 181
             VGNKSDL  SREV EEEGK LAE+EGLYF+ETSA++N NVE+AFL MI +IH+   QK  
Sbjct:   124 VGNKSDLGQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFLSMIGRIHEVLTQKIV 183

Query:   182 LCAKMN-DKTATSNCNNLGGGKEIINIDHEVTATKQ-----SSCCYK 222
             L  ++N D    SN   +  GKEI+NI HEVTAT+      S+CCYK
Sbjct:   184 LDNRLNGDGNNESNGAVVPPGKEIVNI-HEVTATRPLSTSLSNCCYK 229

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2027874 RABA6a "RAB GTPase homolog A6A" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 157/231 (67%), Positives = 186/231 (80%)

Query:     3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
             D+Y+EECDYLFKAV+IGDSAVGKSNLLSRF++DEFR DSKPTIGVEFAYRN+ VGDK+IK
Sbjct:     4 DTYEEECDYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIK 63

Query:    63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
             AQIWDTAGQERFRAITSSYYRGALGALL+YDITRR TF+N KKWL ELR+F +    +VL
Sbjct:    64 AQIWDTAGQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVL 123

Query:   123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
             VGNKSDL  SREV E+EGK LAE+EGLYF+ETSA++N+NVE+AFL MI +IH+   Q+  
Sbjct:   124 VGNKSDLRQSREVEEDEGKTLAESEGLYFLETSALENVNVEEAFLVMIGRIHEVVTQRIA 183

Query:   183 CAKMNDKTATSNCNNLGGG------KEIINIDHEVTATK-----QSSCCYK 222
                 ++  AT + N  G G      KEI+NI HEVTAT+      S+CC+K
Sbjct:   184 SENKSNGAATPHINGNGNGTVLPVGKEIVNI-HEVTATQPLLSSSSNCCFK 233

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2171943 RABA1c "RAB GTPase homolog A1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 121/215 (56%), Positives = 157/215 (73%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D+E DYLFK V+IGDS VGKSNLLSRF ++EF L+SK TIGVEFA R++ V DK+IKAQI
Sbjct:     7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQI 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYD+TR +TFEN + WL+ELR      + ++LVGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             KSDL H   V  E+ K  AE E LYFMETSA++  NVE+AF +++ QIH    +K++   
Sbjct:   127 KSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAM--- 183

Query:   186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                + A+ + N    G +I +I  +V+A K+  CC
Sbjct:   184 ---EAASESANVPSKGDKI-DIGKDVSAVKKGGCC 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 120/216 (55%), Positives = 161/216 (74%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I V DK++KAQI
Sbjct:     7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQI 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TFEN ++WL+ELR+   + + I+ VGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             K+DL H R V+ E+ K  AE E  +FMETSA++++NVE+AF ++++QI++   +K+L   
Sbjct:   127 KADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKAL--D 184

Query:   186 MNDKTATSNCNNLGGGKEI-INIDHEVTATKQSSCC 220
             + D  A      L  G+ I +    +V+A K+  CC
Sbjct:   185 IGDDPAA-----LPKGQTINVGSKDDVSAVKKVGCC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 120/215 (55%), Positives = 159/215 (73%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D++ DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R++ V +K+IKAQI
Sbjct:     7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQI 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYD+TR +TFEN ++WLRELR+     + ++LVGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             KSDL H   V  E+ K  AE E LYFMETSA+++ NVE+AF +++ QI+    +K++   
Sbjct:   127 KSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAM--- 183

Query:   186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                  A  +  N+    E I++D  V+A K++ CC
Sbjct:   184 ----EAGEDSGNVPSKGEKIDVD--VSAVKKTGCC 212

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 122/220 (55%), Positives = 157/220 (71%)

Query:     1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
             M +  D E DYLFK V+IGDS VGKSN+LSRF R+EF L+SK TIGVEFA R ++V  K 
Sbjct:     1 MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query:    61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
             +KAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT+R TFEN  +WLRELR+   S + I
Sbjct:    61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVI 120

Query:   121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
             ++ GNKSDL H R V +E+G+ LAE EGL F+ETSA++  N+E AF  ++++I+    +K
Sbjct:   121 MMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKK 180

Query:   181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
             +L A+           NL G    INI  + +AT +  CC
Sbjct:   181 ALAAQ-------EAAGNLPGQGTAINIS-DSSATNRKGCC 212

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 123/215 (57%), Positives = 156/215 (72%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D+E DYLFK V+IGDS VGKSN+LSRF R+EF L+SK TIGVEFA R  +V  K IKAQI
Sbjct:     6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQI 65

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYDIT+R TF+N  +WLRELR+   S + I++ GN
Sbjct:    66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 125

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             KSDL H R V EE+G+ LAE EGL F+ETSA++  NVE AF  ++ +I+    +K+L A+
Sbjct:   126 KSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQ 185

Query:   186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                + A +N    G G  I N+D      K++ CC
Sbjct:   186 ---EAAAANSAIPGQGTTI-NVDDTSGGAKRA-CC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2057624 ArRABA1h "RAB GTPase homolog A1H" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 119/217 (54%), Positives = 162/217 (74%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             +++ DYLFK V+ GDS VGKSNLLSRF R++F  DS+ TIGVEFA R+I+V DK++KAQI
Sbjct:     7 EDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDKIVKAQI 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TFEN ++WL+ELR+   +   I+LVGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTVIMLVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             K+DL H R ++ EE K  AE E  +FMETSA++ +NVE+AF +++ QI++   +K+L A 
Sbjct:   127 KADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSKKALDAG 186

Query:   186 MNDKTATSNCNNLGGGKEIINIDH--EVTATKQSSCC 220
              +  TA      L  G ++IN+    +V+A K+S CC
Sbjct:   187 DDPTTA------LPKG-QMINVGSRDDVSAVKKSGCC 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2086290 RABA1g "RAB GTPase homolog A1G" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 117/216 (54%), Positives = 160/216 (74%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D++ D+L+K V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I V +K++KAQI
Sbjct:     7 DDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEKIVKAQI 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYD+TR  TFEN ++WL+ELR+   + + I+LVGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIVIMLVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             K+DL H R V+ E+ K  AE E  +FMETSA++ LNVE+AF ++++QI++   +K+L   
Sbjct:   127 KADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASKKAL--D 184

Query:   186 MNDKTATSNCNNLGGGKEI-INIDHEVTATKQSSCC 220
             + D   T     L  G+ I +    +V+  K+  CC
Sbjct:   185 IGDDHTT-----LPKGQSINVGSKDDVSEVKKVGCC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2124593 RABA1e "RAB GTPase homolog A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 120/215 (55%), Positives = 155/215 (72%)

Query:     6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
             D++ DYLFK V+IGDS VGKSNLLSRF R+EF ++SK TIGVEFA R++ V +K+IKAQ+
Sbjct:     7 DDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQL 66

Query:    66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
             WDTAGQER+RAITS+YYRGA+GALLVYDITR  TFEN ++WL+ELR+   + + I+LVGN
Sbjct:    67 WDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGN 126

Query:   126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
             K+DL H R V  EE +  +E E ++FMETSA+   NVE AF  ++ QI++   +K+L   
Sbjct:   127 KADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSRKAL--- 183

Query:   186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
               D T        G   +I N D +VTA K S CC
Sbjct:   184 --DGTGDPMSLPKGQTIDIGNKD-DVTAVKSSGCC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40522	RB11D_TOBAC	No assigned EC number	0.5068	0.9729	0.9729	N/A	no
Q40520	RB11C_TOBAC	No assigned EC number	0.5022	0.9729	0.9729	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.5534	0.9369	0.9585	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.5873	0.8513	0.875	yes	no
Q40195	RB11E_LOTJA	No assigned EC number	0.5348	0.9459	0.9633	N/A	no
Q40193	RB11C_LOTJA	No assigned EC number	0.5433	0.9639	0.9907	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.5114	0.9729	0.9557	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.5441	0.9459	0.9633	N/A	no
P62494	RB11A_RAT	No assigned EC number	0.5873	0.8513	0.875	yes	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.5873	0.8513	0.875	yes	no
Q40523	RB11A_TOBAC	No assigned EC number	0.5181	0.9639	0.9907	N/A	no
P62491	RB11A_HUMAN	No assigned EC number	0.5873	0.8513	0.875	yes	no
P17610	YPT3_SCHPO	No assigned EC number	0.5921	0.8063	0.8364	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5627	0.9459	0.9633	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.5824	0.8693	0.8935	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5296	0.9324	0.9495	N/A	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.5495	0.9594	0.9861	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.5873	0.8513	0.875	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.55	0.9549	0.9906	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.5873	0.8513	0.875	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.5873	0.8513	0.875	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.5873	0.8513	0.875	yes	no
Q0WQN4	RAA6B_ARATH	No assigned EC number	0.7224	0.9864	0.9563	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017813001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-108
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-94
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-88
pfam00071	162	pfam00071, Ras, Ras family	5e-82
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-82
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-71
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-68
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-66
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-65
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-64
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-62
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-62
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-60
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-60
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-56
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-54
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-51
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	7e-51
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-49
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	9e-49
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-47
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-44
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	6e-43
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-43
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-42
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-41
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	6e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-36
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	7e-36
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-35
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-34
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-34
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-32
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-32
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-31
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-31
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-31
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-30
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-29
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-29
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-28
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-28
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-28
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-28
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-28
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-27
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-27
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-26
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-26
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-26
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-25
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-24
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-24
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-23
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-23
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	8e-23
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	9e-22
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-21
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-20
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-20
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-19
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-19
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-16
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	9e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-15
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	8e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-14
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-13
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-12
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-11
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	7e-08
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	9e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-07
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-06
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-06
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	9e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-05
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	3e-05
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	8e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.001
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.001
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.002
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  307 bits (789), Expect = e-108
 Identities = 110/165 (66%), Positives = 133/165 (80%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK V+IGDS VGKSNLLSRF R+EF LDSK TIGVEFA R I++  K IKAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+RAITS+YYRGA+GALLVYDIT+++TFEN ++WL+ELR+   S + I+LVGNKSDL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
            H R V  EE K  AE  GL F+ETSA+   NVE+AF Q++ +I+
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  271 bits (696), Expect = 4e-94
 Identities = 96/164 (58%), Positives = 119/164 (72%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK ++IGDS VGKS+LLSRF   +F    K TIGV+F  + I V  K +K QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR+ITSSYYRGA+GALLVYDIT R +FEN + WL+ELRE+ S  + I+LVGNKSDL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           R+V+ EE +  AE  GL F ETSA  N NVE+AF ++  +I + 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  258 bits (661), Expect = 5e-88
 Identities = 119/219 (54%), Positives = 153/219 (69%), Gaps = 5/219 (2%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M    D E DYLFK V+IGDS VGKSN+LSRF R+EF L+SK TIGVEFA R ++V  K 
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +KAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT+R TF+N ++WLRELR+   S + I
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           ++ GNKSDL H R V EE+G+ LAE EGL F+ETSA++  NVE AF  ++ +I+    +K
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKK 180

Query: 181 SLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC 219
           +L A+       +  + L G    IN+       K+  C
Sbjct: 181 ALAAQ-----EAAANSGLPGQGTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  241 bits (617), Expect = 5e-82
 Identities = 89/162 (54%), Positives = 111/162 (68%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD  VGKS+LL RF +++F  +  PTIGV+F  + I V  K +K QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           FRA+   YYRGA G LLVYDIT R +FEN KKWL E+       + IVLVGNK DL   R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            V+ EEG+ LA+  GL FMETSA  N NVE+AF ++  +I +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  240 bits (615), Expect = 8e-82
 Identities = 88/158 (55%), Positives = 112/158 (70%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V+IGDS VGK++LL RF  ++F  + K TIGV+F  + I V  K +K QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR+ITSSYYRGA GA+LVYD+T R +FEN  KWL EL+E+    + I+LVGNKSDL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
           R+V+ EE +  A+  GL F ETSA    NV++AF  + 
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  214 bits (547), Expect = 2e-71
 Identities = 91/165 (55%), Positives = 110/165 (66%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R I +  K IK QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  +S M I+L+GNK DL 
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             REV+ EEG+  A   GL FMETSA    NVE+AF+    +I+ 
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  206 bits (527), Expect = 2e-68
 Identities = 90/164 (54%), Positives = 113/164 (68%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK ++IGDS VGKS LL RF+ D F      TIG++F  R I +  K IK QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT+SYYRGA+G +LVYDIT   +FEN K W+R + E  S  +  +LVGNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R V++EEG+ LA   G+ F+ETSA  N+NVE+AFL +   I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  202 bits (516), Expect = 1e-66
 Identities = 85/164 (51%), Positives = 110/164 (67%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           YLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K +K QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK DLT
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
             + V+  E K  A+  G+ F+ETSA    NVE+AF+ M  +I 
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIK 164

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  199 bits (507), Expect = 2e-65
 Identities = 88/165 (53%), Positives = 109/165 (66%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF  R I V  + IK QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERFRA+T SYYRGA GAL+VYDITRR+T+ +   WL + R   +    I L+GNK+DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R+V  EE K  A+  GL F+E SA    NVEDAFL+   +I+Q
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  197 bits (503), Expect = 1e-64
 Identities = 71/156 (45%), Positives = 103/156 (66%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GDS+VGKS+++ RF ++EF  + + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+R++   YYRGA  A++VYDIT   +FE  K W++EL+E     + I L GNK+DL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168
           R+V+ EE +  A+  GL FMETSA    NV + F +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  190 bits (485), Expect = 5e-62
 Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K ++IGDS VGKS+LL RF  D F  D   TIGV+F  + + V  K +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTH 131
           RFR +TSSYYRGA G +LVYD+TRR TF+N   WL EL  +  +     +LVGNK D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKE- 119

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +REV  EEG+  A    + F+ETSA   + V+ AF +++ +I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  192 bits (488), Expect = 6e-62
 Identities = 98/215 (45%), Positives = 129/215 (60%), Gaps = 12/215 (5%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
            YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R I + +K IK QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  ++ M I+L+GNK DL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND- 188
            H R V+ EEG+  A+  GL FME SA    NVE+AF++   +I++  IQ  +    N+ 
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK-KIQDGVFDVSNES 182

Query: 189 ---KTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
              K          GG+       + T+++   CC
Sbjct: 183 YGIKVGYGAIPGASGGR-------DGTSSQGGGCC 210

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  186 bits (475), Expect = 1e-60
 Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+LFK ++IGDS VGK+ ++ RF    F      TIGV+F  + + +  K +K QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT SYYR A GA++ YDITRR++FE+   W+ E+ ++ +S + ++L+GNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 130 THSREVNEEEGKILAETEGLYF-METSAMQNLNVEDAFLQMINQI 173
              REV  EE   LAE  G+   +ETSA ++ NVE+AFL M  ++
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  186 bits (473), Expect = 3e-60
 Identities = 85/161 (52%), Positives = 105/161 (65%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK ++IG +  GKS LL +F  ++F+ DS  TIGVEF  R + VG K +K QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++T SYYRGA GALLVYDIT R +F     WL + R   S  + I+LVGNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           REV   E    A+  GL F+ETSA+   NVE+AFL+    I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  176 bits (448), Expect = 9e-56
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 4/159 (2%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTA 69
           Y F+ ++IGDS VGKS+LL RF    F   S PT+GV+F  R I +     IK Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF--CSSCMAIVLVGNKS 127
           GQERFR+IT SYYR ++G LLV+DIT R +FE+   WL E R        + I LVG+K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFI-LVGHKC 119

Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           DL   R+V  EE + LA+  G+ ++ETSA    NVE+AF
Sbjct: 120 DLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  170 bits (432), Expect = 5e-54
 Identities = 68/154 (44%), Positives = 104/154 (67%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V +GD +VGK+++++RF  D F    + TIG++F  + + V DK ++ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT R +F+NT KW+ ++R+   + + IVLVGNK+DL+  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+     F+ETSA    NV+  F
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (412), Expect = 5e-51
 Identities = 62/161 (38%), Positives = 99/161 (61%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+  VGK++L+ R+  ++F    + T    F  + + +G K I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ A+   YYR A GA+LVYDIT   +F+  KKW++EL++   + +++V+VGNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R V++ E +  A++ G    ETSA     +E+ FL +  ++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  162 bits (411), Expect = 7e-51
 Identities = 71/163 (43%), Positives = 108/163 (66%)

Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E+ D+LFK V+IG++ VGK+ L+ RF +  F      TIGV+F  + + +  + IK QIW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR+IT SYYR A   +L YDIT   +F    +WLRE+ ++ ++ +  +LVGNK
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNK 121

Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
            DL   REV+++  +  ++ + +Y++ETSA ++ NVE  FL +
Sbjct: 122 IDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  159 bits (403), Expect = 3e-49
 Identities = 76/164 (46%), Positives = 105/164 (64%), Gaps = 1/164 (0%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+LFK ++IGDS VGKS+LL RFA + F      TIGV+F  R + +  + +K QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR ITS+YYRG  G ++VYD+T   +F N K+WL+E+ + C   +  VLVGNK+D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-VCKVLVGNKNDD 122

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              + V  E+    A   G+   ETSA +N+NVE+ F  +   +
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  157 bits (399), Expect = 9e-49
 Identities = 73/168 (43%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           FK +++GDS VGK+ LL RF    F   S   T+G++F  + + V    +K QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           ERFR++T +YYR A   LL+YD+T +++F+N + WL E+ E+  S + I+L+GNK+D++ 
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
            R V  E+G+ LA+  G+ FMETSA   LNVE AF  +  ++   +++
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVE 168

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  153 bits (387), Expect = 2e-47
 Identities = 68/162 (41%), Positives = 106/162 (65%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +FK ++IG+S+VGK++ L R+A D F      T+G++F  + +   DK IK QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           ER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      ++LVGNK D+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            R V+ E G+ LA+  G  F E SA +N+NV+  F ++++ I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  148 bits (374), Expect = 1e-44
 Identities = 83/178 (46%), Positives = 109/178 (61%), Gaps = 7/178 (3%)

Query: 1   MGDSYDEECDY--LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD 58
           MG S  +   Y   FK ++IGDS VGKS+LL  F       D  PTIGV+F  + + VG 
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGG 59

Query: 59  KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSS- 116
           K +K  IWDTAGQERFR +TSSYYR A G +LVYD+TRR TF N +  W +E+  + ++ 
Sbjct: 60  KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119

Query: 117 -CMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            C+ + LVGNK D    R+V+ EEG  LA+  G  F+E SA    NVE  F ++  +I
Sbjct: 120 DCVKM-LVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Length = 211

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  141 bits (359), Expect = 6e-43
 Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 4/162 (2%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQE 72
           K V++G   VGKS L  RF   EF  +  PTI  E +YR  I V  +     I DTAGQE
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTI--EDSYRKQIVVDGETYTLDILDTAGQE 58

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCM-AIVLVGNKSDLTH 131
            F A+   Y R   G +LVY IT R +FE  K    ++          IVLVGNK DL +
Sbjct: 59  EFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLEN 118

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            R+V+ EEG+ LAE  G  F+ETSA  N+N+++ F  ++ +I
Sbjct: 119 ERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  143 bits (361), Expect = 8e-43
 Identities = 68/161 (42%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           + ++IG   VGK++L+ RF  D F    K T+GV+F  + + +  K I+ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           F +ITS+YYR A G +LVYDIT++ TF++  KW++ + ++ S    ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 134 EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           E+  ++G+  A +  G+ F E SA  N NV++ FL++++ I
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  140 bits (353), Expect = 4e-42
 Identities = 66/157 (42%), Positives = 101/157 (64%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           F+ ++IGDS VGK+ LL RF  +EF      TIGV+F  + I V    ++ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R++ IT  YYR A G  LVYDI+   ++++  KW+ ++ E+    +  +L+GNK+D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
           R+V +E+G  LA+  G+ F ETSA  N N++++F ++
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  140 bits (356), Expect = 5e-42
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 21/215 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQ 71
           FK ++IGD  VGK++++ R+    F    K TIGV+FA + I    + +++ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL--REFCSSCMAI--VLVGNKS 127
           ERF  +T  YY+GA+GA++V+D+TR +TFE   KW  +L  +    +   I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 128 DLTHSREVN--EEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           DL   R     E+  +   E   + + ETSA +N+N+E+A   ++       I K+    
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN-----ILKNDKGL 175

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
            + +    N  +L           E T +K  SCC
Sbjct: 176 QSPEPDEDNVIDL---------KQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  138 bits (349), Expect = 2e-41
 Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 5/160 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSD 128
           RF+++  ++YRGA   +LVYD+T   +FE+   W  E     S         V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 129 LTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFL 167
           L   R+V+ ++ +   +++G   + ETSA + +NV+ AF 
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFE 160

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  138 bits (348), Expect = 8e-41
 Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 18/188 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD  VGK+ LL+R   DEF     PTIG     + I    + IK Q+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 73  RFRAITSSYYRGALGALLVYDIT-RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
            +R++   YYRGA G L+VYD T R ++ E T++WL ELRE     + I+LVGNK DL  
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 132 SREVNEEEGK---------------ILAETEGLYFMETSAMQ--NLNVEDAFLQMINQIH 174
            +  +EE                  +L E      +ETSA      NV + F +++ ++ 
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185

Query: 175 QTTIQKSL 182
           +   +  L
Sbjct: 186 EEIEKLVL 193

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  133 bits (337), Expect = 2e-39
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 13/168 (7%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF-----AYRNIRVGDKL---- 60
           DYL K + +GDS VGK+  L R+  ++F      T+G++F      Y +           
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 61  -IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE--FCSSC 117
            +  Q+WDTAGQERFR++T++++R A+G LL++D+T   +F N + W+ +L+   +C + 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN- 120

Query: 118 MAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165
             IVL+GNK+DL   REV+E + + LA+  G+ + ETSA    NVE A
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  131 bits (333), Expect = 6e-39
 Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F  D  PTI  E +YR  I +  ++    I DTAGQ
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI--EDSYRKQIEIDGEVCLLDILDTAGQ 58

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E F A+   Y R   G LLVY IT R +FE  KK  RE  LR      + IVLVGNK DL
Sbjct: 59  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDL 117

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R V+ EEGK LA   G  F+ETSA + +NV++AF  ++ +I
Sbjct: 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  130 bits (329), Expect = 2e-38
 Identities = 71/164 (43%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F  +  PTI  E +YR  I +  ++    I DTAGQ
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI--EDSYRKQIEIDGEVCLLDILDTAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E F A+   Y R   G LLVY IT R +FE   K  RE  LR      + IVLVGNK DL
Sbjct: 61  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVKDRDDVPIVLVGNKCDL 119

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            + R V+ EEGK LA   G  F+ETSA + +NV++AF  ++ +I
Sbjct: 120 ENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  128 bits (323), Expect = 2e-37
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 5/160 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK ++IGDS VGK+ L  RF    F   ++ TIGV+F  R + +  + IK Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 73  RFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLT 130
           RFR ++   YYR     + VYD+T  A+F +   W+ E  +    + +  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 131 HSREVNEEEGKILAETEGLYFMETSA---MQNLNVEDAFL 167
              +V  +  +  A+   +   ETSA    +N +VE  F+
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  125 bits (315), Expect = 2e-36
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI--RVGDKLIKAQIWDTAGQ 71
           K +++G+  VGKS+++ RF +  F  D K TIGV+F  + I  R  D+ ++  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           E F AIT +YYRGA   +LV+  T R +FE  + W  ++   C   + +VLV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
              +  EE + LA+   L    TS   + NV + F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  124 bits (312), Expect = 7e-36
 Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDE-FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
            K V++GD  VGKS LL+R   ++    + KP     +    I    K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 72  ERFRAITSSYYRGALGALLVYDITRRA-TFENTK-KWLRELREFCSSCMAIVLVGNKSDL 129
           E + AI   YYR    +L V+DI       E    K  +E+     S + I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
               ++      + A+  G   +  SA    N++ AF
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  122 bits (307), Expect = 4e-35
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
           ERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
           D+   R+V+ EE +      G Y + ETSA    NV  AF + + ++
Sbjct: 125 DIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  120 bits (304), Expect = 1e-34
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 5/158 (3%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K + +G+S VGKS ++ R+    F     PTIG+++  + + V +K ++   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-----MAIVLVGNKSD 128
           +  + + +Y+   G LLVYD+T R +FE    WL+E+++          + +V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           LT  R V+E+EG++ AE++G  + ETSA     V + F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  120 bits (302), Expect = 4e-34
 Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G  +VGKS+L  +F    F     PTI   F+ + I    +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIITYKGQEYHLEIVDTAGQDE 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDLTH 131
           +  +   Y  G  G +LVY +T R +FE   K + +  L       + IVLVGNKSDL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTI-----QKSLCAKM 186
            R+V+ EEGK LAE+ G  F+E+SA +N NVE+AF  +I +I +        QKS C+ M
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSKCSVM 180

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  115 bits (291), Expect = 8e-33
 Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 4/163 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI-RVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F  D  PTI  E +Y     +  +  +  I DTAGQ
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI--EDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E F A+   Y R   G LLV+ +T R +FE   K+  + LR        ++LVGNK+DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           H R+V+ EEG+ LA    + ++ETSA   +NV+ AF  ++  I
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  115 bits (289), Expect = 2e-32
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 4/165 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ 71
            K +M+G   VGKS L  +F  DEF  D +PT     +YR  + +  + ++  I DTAGQ
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--ADSYRKKVVLDGEEVQLNILDTAGQ 58

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G LLV+ IT   +F    +   + LR      + ++LVGNK DL 
Sbjct: 59  EDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE 118

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R+V+ EE   LAE  G+ ++ETSA    NV+  F  ++ +I Q
Sbjct: 119 DKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  114 bits (288), Expect = 2e-32
 Identities = 61/157 (38%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K +++GDSAVGKS L+ RF  D +      T  +     N +   K I    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           F+ + +SYY  A   +LV+D+TR+ T++N  KW  ELRE+      IV V NK DL  S 
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIV-VANKIDLDPS- 119

Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
            V +++    AE   L     SA    NV   F   I
Sbjct: 120 -VTQKKFN-FAEKHNLPLYYVSAADGTNVVKLFQDAI 154

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  114 bits (287), Expect = 5e-32
 Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYL K +++GDS VGK  +L+              +G+++    I +  + +K Q+WDT+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQ RF  I  SY RGA G +LVYDIT R +F+   +W++E+ E     +  +LVGN+  L
Sbjct: 64  GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLHL 122

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
              R+V  E+ +  AE  G+ F E S + N N+ ++F ++
Sbjct: 123 AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  113 bits (284), Expect = 1e-31
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+  +    N+ V  K +   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      LL + +   ++FEN   KW  E++ +C +   I+LVG K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNV-PIILVGTKIDLRDD 119

Query: 130 --------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMIN 171
                      + +  EEG+ LA+  G   +ME SA+    +++ F + I 
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  113 bits (285), Expect = 1e-31
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 25/212 (11%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           K VM+G  +VGK++L+ R+    F +   + TIG  F  + + VG++++   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ A++  YYRGA  A++ YD+T  ++FE  K W++EL+     C  I L G KSDL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHC-KIYLCGTKSDLIEQ 120

Query: 133 ----REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188
               R+V+  + +  A+       ETS+    NV++ F           + +   ++ N+
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF---------QKVAEDFVSRANN 171

Query: 189 KTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
           +  T    +LG  K           +   SCC
Sbjct: 172 QMNTEKGVDLGQKKN----------SYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  111 bits (280), Expect = 7e-31
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQE 72
           K V++GD  VGK+ L  +   + F     PTI  E +YR  + V  +    ++ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--EDSYRKQVVVDGQPCMLEVLDTAGQE 58

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSDL 129
            + A+   + R   G +LVY IT R+TFE  +++   ++ +++  ++ + I++VGNK D 
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
            + REV+ EEG  LA   G  F+E SA  N+NVE AF  ++  + Q 
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  110 bits (276), Expect = 2e-30
 Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K +++GD +VGK+ L++RF +D F  + K TIGV+F      V       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH- 131
           F+ I S+YYRGA   ++V+D+T  A+ E+T++WL + L+E   S + + LVG K DL+  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 132 -SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
               + E++   LA      +   SA+   NV D F ++
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  108 bits (270), Expect = 2e-29
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 4/165 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F ++ F  +  PTI  E +YR    + ++     I DTAGQ
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI--EDSYRKQCVIDEETCLLDILDTAGQ 63

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + A+   Y R   G L VY IT R++FE    +  + LR      + ++LVGNK DL 
Sbjct: 64  EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R+V+  EG+ LA++ G+ F+ETSA Q +NV++AF +++ +I +
Sbjct: 124 SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK 168

Length = 189

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  107 bits (269), Expect = 2e-29
 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE-----FAYRNIRVGDKLIKAQIWD 67
           FK V++GD   GK+  + R    EF      T+GVE     F   +   G   I+  +WD
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDF---HTNRGK--IRFNVWD 55

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAGQE+F  +   YY     A++++D+T R T++N   W R+L   C + + IVL GNK 
Sbjct: 56  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKV 114

Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167
           D+   +   + +       + L + E SA  N N E  FL
Sbjct: 115 DIKDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFL 152

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  106 bits (266), Expect = 4e-29
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 6/164 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F     PTI  E +YR  + V  +    +I DTAG 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDGQQCMLEILDTAGT 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G +LVY IT ++TF N  + LRE  LR   +  + ++LVGNK DL
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDL 118

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R V +E+G+ LA   G  F+ETSA   +NV + F  ++ QI
Sbjct: 119 EDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  105 bits (263), Expect = 1e-28
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA-QIWDTAGQ 71
           ++ V+ G   VGKS+L+ RF +  FR    PTI  E  YR +    K I   QI DT G 
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCSKSICTLQITDTTGS 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTK---KWLRELREFCSSCMAIVLVGNKSD 128
            +F A+           +LVY IT + + E  K   + + E++      + I+LVGNK D
Sbjct: 60  HQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
            + SREV+  EG  LA T    FMETSA  N NV++ F +++N
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLN 162

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  105 bits (263), Expect = 2e-28
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           V++GD AVGK+ LL  +  + F  D  PT+   ++  ++ V  K ++  +WDTAGQE + 
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDYD 60

Query: 76  AITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL---TH 131
            +    Y      L+ + +   A+FEN  +KW  E++ FC +   I+LVG K DL     
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNV-PIILVGTKLDLRNDKS 119

Query: 132 SREVNEEEGKILAETEGLY----------FMETSAMQNLNVEDAF 166
           + E   ++ +     E             ++E SA+    V + F
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  104 bits (262), Expect = 2e-28
 Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 7/164 (4%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR  + +  +     I DTAGQ
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E + A+   Y R   G L V+ I  R +FE+   + RE   R   S  + +VLVGNK DL
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTY-REQIKRVKDSDDVPMVLVGNKCDL 118

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             +R V+  +G+ LA++ G+ ++ETSA     VE+AF  ++ +I
Sbjct: 119 A-ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  104 bits (260), Expect = 4e-28
 Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 11/172 (6%)

Query: 35  DEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI 94
           D F  + + TIG++F  + + + +  ++ Q+WDTAGQERFR++  SY R +  A++VYDI
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 95  TRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154
           T R +FENT KW++++       + I LVGNK+DL   R+V  EEG   A+     F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 155 SAMQNLNVEDAFLQMI-----------NQIHQTTIQKSLCAKMNDKTATSNC 195
           SA    N++  F ++            N  +   IQ +  +  NDK   S C
Sbjct: 123 SAKAGHNIKVLFKKIAAKLPNLDNSNSNDANVVDIQLTNNSNANDKNMLSKC 174

Length = 176

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  105 bits (263), Expect = 5e-28
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF    +PTIGVE    +       I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY     A++++D+T R T++N   W R+L   C + + IVL GNK D+  +
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVK-N 131

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167
           R+V + +       + L + E SA  N N E  FL
Sbjct: 132 RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165

Length = 219

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  102 bits (256), Expect = 1e-27
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +F    F     PTI  +F  + I V       +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDLT 130
           +F ++   Y +   G ++VY +  + TF++ K  +R+  +R      + I+LVGNK DL 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             REV+  EG+ LAE  G  FMETSA     V + F +++ Q+
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  101 bits (252), Expect = 6e-27
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 14  KAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRVGD--KLIKAQIWDTA 69
           +  ++GD AVGKS L+  F  D   F+ +   T G +   + + V D    ++  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSD 128
           GQE F  +  + +       +VYD+T   +F N  +W+  +R          VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           LT  REV+  + + LA+   L F ETSA + +  E  FL +    H
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARAFH 167

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  101 bits (253), Expect = 1e-26
 Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK +++GD  VGK+  + R    EF     PT+GVE            I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY     A++++D+T R T++N   W R++   C + + IVLVGNK D+   
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN-IPIVLVGNKVDVK-D 127

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167
           R+V   +       + L + + SA  N N E  FL
Sbjct: 128 RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFL 161

Length = 215

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =   99 bits (249), Expect = 2e-26
 Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQ 71
           +K VM+G   VGKS +  +F    F     PTI  E AY    R+ ++     I DTAGQ
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI--EDAYKTQARIDNEPALLDILDTAGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL--REFCSSCMAIVLVGNKSDL 129
             F A+   Y R   G ++ Y +T R +F+   ++ +EL  R   +  + +VLVGNK DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVLVGNKVDL 119

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
              R+V  EEG+ LA      F ETSA     ++DAF  ++ +I +     +L
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 99.6 bits (248), Expect = 2e-26
 Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 7/165 (4%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F     PTI  E +YR  I V  +    +I DTAG 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI--EDSYRKQIEVDCQQCMLEILDTAGT 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G  LVY IT + +F + +  LRE  LR   +  + ++LVGNK DL
Sbjct: 60  EQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQD-LREQILRVKDTEDVPMILVGNKCDL 118

Query: 130 THSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
              R V++EEG+ LA   G   F+ETSA   +NV++ F  ++ QI
Sbjct: 119 EDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 98.5 bits (246), Expect = 5e-26
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G S VGKS L  RF    F  + +P +   ++ R + +  + +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 74  FRA--ITSSYYRGALGALLVYDITRRATFENTKKWLRELREF--CSSCMAIVLVGNKSDL 129
                      R A G +LVY IT R++F+   + L+ +RE       + ++LVGNK+DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQMINQI 173
            HSR+V+ EEG+ LA   G  F E SA +N L V++ F ++  ++
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 97.6 bits (243), Expect = 1e-25
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F ++ F     PTI  E +YR  + +  +    +I DTAG 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI--EDSYRKQVEIDGRQCDLEILDTAGT 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-----SSCMAIVLVGNK 126
           E+F A+   Y +   G LLVY +T  A+       L ELRE       S  + +VLVGNK
Sbjct: 60  EQFTAMRELYIKSGQGFLLVYSVTSEASLNE----LGELREQVLRIKDSDNVPMVLVGNK 115

Query: 127 SDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
           +DL   R+V+ E+G  L++  G   F ETSA +  NV++ F+ ++ QI
Sbjct: 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 96.0 bits (239), Expect = 1e-24
 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQ 71
            K V++GD A GK++L+ RFA++ F    K TIG++F  R I + G   +  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCM---AIVLVGNKSD 128
           +    +   Y  GA    LVYDIT   +FEN + WL  +++          +VLVGNK+D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 129 LTHSREVNEEEGKILAETEGL 149
           L H+R+V  E+    A+   +
Sbjct: 121 LEHNRQVTAEKHARFAQENDM 141

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSK---PTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           V++G   VGKS+LL+     E    S     T   +       +    +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 73  RF-----RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
            F       +     RGA   LLV D T R + E+ K  L  LR      + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPIILVGNKI 116

Query: 128 DL-THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
           DL            + LA+  G+   E SA     V++ F ++I 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 92.5 bits (230), Expect = 4e-23
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           ++ V++GDS VGKS+L + F    +   +    G +   R + V  +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTH 131
               +  S  +     ++VY +T R++FE   +   +LR    +  + I+LVGNKSDL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           SREV+ +EG+  A      F+ETSA    NV++ F  ++ Q+
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 91.6 bits (227), Expect = 5e-23
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 18  IGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI 77
           +GD   GK+  + R    EF      T+GVE            I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 78  TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE 137
              YY     A++++D+T R T++N   W R+L   C + + IVL GNK D+   R+V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVK-DRKVKA 118

Query: 138 EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +        + L + + SA  N N E  FL +  ++
Sbjct: 119 KS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 90.9 bits (226), Expect = 8e-23
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 23/175 (13%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDT 68
           D   K V++GD   GK+ LL  +A+  F  +  PT+  E     ++V + K+I+  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 69  AGQE---RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVG 124
           AGQE   R R ++   Y      L+ Y +    + +N + KW  E+  FC     IVLVG
Sbjct: 60  AGQEDYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPG-TPIVLVG 115

Query: 125 NKSDLTHSRE------------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            K+DL   +             V  E+G+ +A++ G   ++E SA    NV++ F
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 87.5 bits (217), Expect = 9e-22
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK++L+  +  + +  +  PT    F+   + V  K ++ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           F  +    Y      LL + +   ++F+N ++KW+ E+R+       I+LVG ++DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPK-APIILVGTQADLRTD 119

Query: 130 ---------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
                       + V++   K LAE  G   ++E SA+   N+++ F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 16/167 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 120

Query: 133 ----RE--------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
               RE        V  EEG+ +AE  G + ++E SA     V + F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 86.8 bits (215), Expect = 2e-21
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK++LL+ F R  F    +PT+  E    +I V    ++  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS 132
           F  + S  Y      +L + +    + EN + KWL E+R  C   + +VLV  K DL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-VKLVLVALKCDLREP 119

Query: 133 REVNEEEGKILAETEGL---------YFMETSAMQNLNVEDAFLQ 168
           R   +     ++  EGL          ++E SA  N  V +AF +
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTE 164

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK++LL  F   EF  +  PT+  E    + RV  K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y  A   L+ + I    + EN   KW+ E+R +C + + ++LVG K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPN-VPVILVGLKKDLRQE 120

Query: 130 THSRE-------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
             ++        V  ++ K++A   G   +ME SA+    V+D F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 83.4 bits (206), Expect = 4e-20
 Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V +GD AVGK+ +L  +  + F  D  PT+   F+  N+ V    +   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQED 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL 129
           +  +    YRGA   LL + +  +A++EN  KKW+ ELR +    + IVLVG K DL
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPG-VPIVLVGTKLDL 117

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 82.1 bits (203), Expect = 2e-19
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++GD+ +GK++L+ ++   EF  +   T+GV F  + I +    I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           F  +     + A+  L ++D+TR++T  + K+W R+ R F  + + I LVG K D     
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYD--LFA 118

Query: 134 EVNEEEGKILAETEGLY-------FMETSAMQNLNVEDAF 166
           ++  EE + + +    Y        +  S   ++NV+  F
Sbjct: 119 DLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 81.5 bits (201), Expect = 6e-19
 Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 68/247 (27%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-----NIRVGDKLIKAQIWDT 68
           K V++GD  VGK++LL R+    F+ D+  T+G  F  +     NI          IWDT
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGPYNI---------SIWDT 51

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKS 127
           AG+E+F  + S Y RGA   +L YD++   + E  +     L +  +  C+  V VGNK 
Sbjct: 52  AGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAV-VGNKL 110

Query: 128 DLTHS-------------------REVNEEEGKILAE---------------TEGLYFME 153
           DLT                     R+V  E+ K   +                E + F E
Sbjct: 111 DLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-E 169

Query: 154 TSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTA 213
           TSA    NV++ F  + N +    + +   A+ N    T    NL   K           
Sbjct: 170 TSAKTGYNVDELFEYLFNLVLPLILAQR--AEANRTQGTV---NLPNPKR---------- 214

Query: 214 TKQSSCC 220
             +S CC
Sbjct: 215 -SKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+  E    +  V  + I+  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E+REFC +   ++LVG KSD    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPN-TPVLLVGCKSDLRTD 120

Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQN-LNVEDAF 166
                 L++ R+  V+ E+G+ LA+  G   ++E SA  +  +V D F
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 72.8 bits (178), Expect = 5e-16
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+  E    +  +  + I+  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E++EFC +   ++LVG KSD    
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 124

Query: 129 ------LTHSRE--VNEEEGKILAETEGLY-FMETSAMQNLN-VEDAF 166
                 L++ R+  V+ ++G  +A+  G   ++E SA+Q+ N V D F
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.5 bits (173), Expect = 7e-16
 Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V+IGD   GKS+LLS+    EF  +     G   A   + V        IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 74  FRAITSSYYRGALGALLVYDITRRATFE---NTKKWLRELREFCSSCMAIVLVGNK 126
            +     + + A   LLVYD+T R +         WL  LR+     + ++LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGK-IPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 72.2 bits (177), Expect = 9e-16
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           + V +G + VGK+ L+ RF  D F    + T+  E   +   V    +   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHS 132
           F A+     +      LVY +    +FE  K+   E+ E      + IV+VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 133 REVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMINQ 172
           R+V   +     E +    F+E SA  N NV + F +++ Q
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           ++ V++G S VGK+ ++SRF    F     PTI  +F  +   +  ++ +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 73  RFRAITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC----------MAIV 121
            F A+   S   G +  +LV+ +  R +FE   +   ++ E   SC          + +V
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILE-TKSCLKNKTKENVKIPMV 117

Query: 122 LVGNKSDLTHSREVNEEE-GKILAETEGLYFMETSAMQNLNVEDAF 166
           + GNK+D    REV  +E  +++   E   + E SA +N N+++ F
Sbjct: 118 ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 68.8 bits (169), Expect = 8e-15
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQE 72
           +M+G    GK+ +L +    E    + PTIG  VE   Y+N++         +WD  GQ+
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVETVEYKNVKF-------TVWDVGGQD 54

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
           + R +   YY    G + V D + R   E  K  L + L E       ++++ NK DL  
Sbjct: 55  KIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPG 114

Query: 132 SREVNEEEGKILAETEGL----YFMETSAMQNLNVEDAFLQMINQ 172
           +   +E   ++L          +    SA+    +++    +I Q
Sbjct: 115 ALTESELI-ELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +A D F  +  PT+   +A  ++ VG K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSD--- 128
            +  +    Y      L+ + +   A+F+N K +W+ EL+E  +  +  +L+G + D   
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPYLLIGTQIDLRD 118

Query: 129 -------LTHSRE--VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
                  L   +E  +  E+G+ LA+  G   ++E SA+    ++  F + I
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 170

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE- 72
           K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 61

Query: 73  --RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL 129
             R R +  SY +  +  L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL
Sbjct: 62  YDRLRPL--SYPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDL 117

Query: 130 THSRE------------VNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
              ++            +   +G  +A E   + ++E SA+    ++  F + I
Sbjct: 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 67.7 bits (165), Expect = 7e-14
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 21/182 (11%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD+  GK+ LL  FA+D +     PT+  E    +  +    I+  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNK----SD 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E +EFC +   +VLVG K    +D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNA-KLVLVGCKLDMRTD 120

Query: 129 LTHSRE--------VNEEEGKILAETEGL--YFMETSAMQNLNVEDAF----LQMINQIH 174
           L+  RE        V  E+G +LA   G   Y   +S M   +V D F    L  + + H
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 175 QT 176
            +
Sbjct: 181 PS 182

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKP------TIGVEFAYRNIRVGDKLIKAQIWD 67
           + V+IGD  VGKS+L+     +EF  ++ P      TI  +     +          I D
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEF-PENVPRVLPEITIPADVTPERVPT-------TIVD 55

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNK 126
           T+ + + RA  ++  R A    LVY + R +T E    KWL  +R      + I+LVGNK
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVK-VPIILVGNK 114

Query: 127 SDLTHSREVNEEEGKILA------ETEGLYFMETSAMQNLNVEDAF 166
           SDL         E ++L       E E    +E SA   +NV + F
Sbjct: 115 SDLRDGSSQAGLEEEMLPIMNEFREIET--CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 16/171 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 120

Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E G+ LA + + + ++E SA+    +++ F + I
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQE 72
           K +++G   VGK++L  +   ++F  D   T G+      I   + K I+  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 73  RFRA-----ITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
            + A     +TS S Y      LLV+D+           WLR+++ F      ++LVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTH 115

Query: 127 SDLTHSREVNEE 138
            D +   ++ ++
Sbjct: 116 IDESCDEDILKK 127

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  + F  +  PT+   ++ +   V  + +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  + +  Y      ++ + I   +++EN + KW  E+   C + + I+LVG K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN-VPILLVGTKKDLRND 122

Query: 133 REVNE------------EEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
            +  +            ++G  LA+    + ++E SA+    V++ F + +  +   T  
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 180 K 180
           K
Sbjct: 183 K 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
           ++G    GK+ L++  A  +F  D+ PT+G  F  R +  G+  IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 77  ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDL 129
           +   Y RG    + V D   R   E  K  L +L E  S   + ++++GNK+DL
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG---DKLIKAQIWDTAGQE 72
           VM+G  + GK+ +L R   +EF +++ PT G  F    I+V     K +    WD  GQE
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSDLTH 131
           + R +  SY R   G + V D       E  K  L ++ +F  +    VLV  NK DL +
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 132 SREVNEEEGKILAETE 147
           +  V+E E K+LA  E
Sbjct: 124 ALPVSEVE-KLLALHE 138

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTA 69
           +K +++G    GK+ +L +F   E  + + PTIG    E  Y+NIR         +WD  
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVEEIVYKNIRFL-------MWDIG 67

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQE  R+  ++YY      +LV D T R     TK+ L ++        A++LV  NK D
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQD 127

Query: 129 L 129
           L
Sbjct: 128 L 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GK+ +L   A+D +     PT+  E     +   ++ ++  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDL 129
           +  +    Y  +   LL +DI+R   F++  KKW  E+ ++C S   I+L+G K+DL
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPS-TRILLIGCKTDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTA 69
            + +++G    GK+ +L +    E  + + PTIG       Y+N+       K  +WD  
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTYKNV-------KFTVWDVG 66

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSD 128
           GQE  R +  +Y+      + V D   R   E  K+ L   L E   +   ++++ NK D
Sbjct: 67  GQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQD 126

Query: 129 LTHSREVNE 137
           L  +    E
Sbjct: 127 LPGAMSEAE 135

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 25/141 (17%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-----KLIKA----- 63
           + +++GDS VGKS+L+    +         TIG     ++I  G        IK      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 64  ---QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF------- 113
              ++WD +G ER++   S +Y    G + V+D+++R T  + +KW  E+          
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 114 -----CSSCMAIVLVGNKSDL 129
                    +  +++GNK+D+
Sbjct: 143 GSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 46/198 (23%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSK------PTIGVEFAYRNIR---------V 56
             K V++GD+AVGK+ L+   A ++     +      PT+     YR  +         V
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 57  GDKLIKAQIWDTAG----QERFRAITSSYYRGALGALLVYDITRRATFENTKK-WLRELR 111
               +  ++WDT G      RF     +Y R  +  LL + I    +  N K  W  E+R
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 112 EFCSSCMAIVLVGNKSDLTH-------------------SREVNEEEGKILAETEGLYFM 152
            FC   + ++LVG K DL +                   +  +  E G+ +A+  G+ + 
Sbjct: 116 HFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 153 ETSAMQNLNVEDAFLQMI 170
           ETS +    V+D F   I
Sbjct: 175 ETSVVTQFGVKDVFDNAI 192

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-----DKLIKAQIWDT 68
           K +++GDS VGKS+L+    +++   +   T+G     R+   G     +K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 69  AGQ----ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE------------ 112
            G     E  ++  + +Y    G + V+D+T + + +N  +W  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 113 -------FCSSCMAIVLVGNKSDLTH--SREVNEEEGKILAETE 147
                  F  + + ++++G K D      R         L+E  
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDF 165

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 14  KAVMIGDSAVGKSNLLSRFA----------RDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           K V+IG    GK+  +   +                  K    V   + +I + +     
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT-GV 70

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS--CMAIV 121
            ++ T GQERF+ +     RGA+GA+++ D +R  TF        E+ +F +S   + +V
Sbjct: 71  HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA-----EEIIDFLTSRNPIPVV 125

Query: 122 LVGNKSDL 129
           +  NK DL
Sbjct: 126 VAINKQDL 133

Length = 187

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAG 70
           + +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +WD  G
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVETVTYKNI-------SFTVWDVGG 66

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV- 123
           Q++ R +   YY    G + V D   R   +  ++ L       ELR+      A++LV 
Sbjct: 67  QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRD------AVILVF 120

Query: 124 GNKSDLTHSREVNEEEGKI 142
            NK DL  + +  E   K+
Sbjct: 121 ANKQDLPDAMKAAEITEKL 139

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 16  VMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +++G DSA GKS LL +    E  + + PT+G  VE          K +   +WD  GQE
Sbjct: 3   LLLGLDSA-GKSTLLYKLKHAEL-VTTIPTVGFNVEMLQLE-----KHLSLTVWDVGGQE 55

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDL 129
           + R +   Y     G + V D +  A  + ++K L+  L+      + +VL+ NK DL
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAG 70
           + +M+G  A GK+ +L +    +  + + PT+G  VE   Y+N+       K  +WD  G
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVGG 62

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLVG 124
           Q++ R +   YY G  G + V D   R   +  ++ L      RE+R+     + +V   
Sbjct: 63  QDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRD----ALLLVF-A 117

Query: 125 NKSDL 129
           NK DL
Sbjct: 118 NKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQE 72
           +M+G  A GK+ +L +    E  + + PTIG  VE   Y+N+       K  +WD  GQ+
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNL-------KFTMWDVGGQD 72

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLR------ELREFCSSCMAIVLV-GN 125
           + R +   YY+   G + V D   R    + ++ L       ELR+      A++LV  N
Sbjct: 73  KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD------AVLLVFAN 126

Query: 126 KSDLTHSREVNE 137
           K DL ++    E
Sbjct: 127 KQDLPNAMSTTE 138

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 27/138 (19%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQE 72
           +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +WD  GQ+
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNI-------SFTVWDVGGQD 55

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLR------ELREFCSSCMAIVLV-GN 125
           + R +   Y++   G + V D   R      ++ L+      ELR+      A++LV  N
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRD------AVLLVFAN 109

Query: 126 KSDL---THSREVNEEEG 140
           K DL     + EV ++ G
Sbjct: 110 KQDLPNAMSAAEVTDKLG 127

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSK--------PTIGVEFAYRNIRVGDKLIKAQIWD 67
           +++G    GK+  L +  + +F  + K        PT+G+      I VG    +   WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIG--TIEVGK--ARLMFWD 57

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNK 126
             GQE  R++   YY  + G + V D T R  F  +K    + +       + ++++ NK
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANK 117

Query: 127 SDLTHSREVNE 137
            DL  +  V E
Sbjct: 118 QDLPDALSVAE 128

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 21/137 (15%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD----- 67
            +  ++G   VGK+ ++ +F   EF  +  PT         + +  ++    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 68  ----TAGQE----RFRAITSSYYRGALGALLVYDITRRATFENTK---KWLRELREFCSS 116
               TAGQE    RFR + +S        +LVYDI    +F   K   + + E R   + 
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSR-----AFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 117 CMAIVLVGNKSDLTHSR 133
              IV+VGNK D    R
Sbjct: 116 EPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 24/134 (17%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTAG 70
           + V +G    GK+ +L +  +DEF +   PTIG       Y+N+       K  IWD  G
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVETVEYKNL-------KFTIWDVGG 52

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV- 123
           + + R +   YY      + V D + R         L      +ELR+      A++L+ 
Sbjct: 53  KHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRD------ALLLIF 106

Query: 124 GNKSDLTHSREVNE 137
            NK D+  +  V E
Sbjct: 107 ANKQDVAGALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 24/139 (17%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAG 70
           + +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +WD  G
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVGG 70

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLR------ELREFCSSCMAIVLV- 123
           Q++ R +   Y++   G + V D   R      +  L       ELR+      A++LV 
Sbjct: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD------AVLLVF 124

Query: 124 GNKSDLTHSREVNEEEGKI 142
            NK DL ++    E   K+
Sbjct: 125 ANKQDLPNAMNAAEITDKL 143

Length = 181

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           + +G    GK+ L+S    +   +  K    V F    +R+    +   I+D  G   FR
Sbjct: 3   LTVGLDNAGKTTLVSALQGE---IPKKVAPTVGFTPTKLRLDKYEV--CIFDLGGGANFR 57

Query: 76  AITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSRE 134
            I  +YY  A G + V D +     +  K+ LRE L+    S   I+++ NK D  ++  
Sbjct: 58  GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL 117

Query: 135 VNE 137
             +
Sbjct: 118 GAD 120

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 21/147 (14%)

Query: 14  KAVMIG-DSAVGKSNLLSRFARDEFRLDS-KPTIGV---EFAYRNIRVGDKLIKAQIWDT 68
           K V +G D+A GK+ LL     D  RL    PT+     E    N+       K   +D 
Sbjct: 21  KIVFLGLDNA-GKTTLLHMLKDD--RLAQHVPTLHPTSEELTIGNV-------KFTTFDL 70

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKS 127
            G E+ R +   Y+    G + + D      F+ +K+ L   L +   + + I+++GNK 
Sbjct: 71  GGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKI 130

Query: 128 DLTHSREVNEEEGKILAETEGLYFMET 154
           D      V+EEE   L E  GLY   T
Sbjct: 131 DKP--GAVSEEE---LREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 24  GKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY 82
           GK+ ++++      +  +  PT+G  F   + + G+  +    +D +GQ ++R +   YY
Sbjct: 11  GKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGKYRGLWEHYY 66

Query: 83  RGALGALLVYDITRRATFENTKKWLRELRE---FCSSCMAIVLVGNKSDL 129
           +   G + V D + R      K  L  L          + I+   NK DL
Sbjct: 67  KNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDL 116

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
           ++G    GK+ +L + A  E      PT G  F  +N++      K  +WD  GQ + R 
Sbjct: 20  LLGLDNAGKTTILKQLA-SEDISHITPTQG--FNIKNVQADG--FKLNVWDIGGQRKIRP 74

Query: 77  ITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREV 135
              +Y+      + V D   R  FE   + L E L E   + + +++  NK DL  +   
Sbjct: 75  YWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPA 134

Query: 136 NE 137
            E
Sbjct: 135 EE 136

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           +++G    GK++LL   + +       PT G    + ++ +  +    ++ +  G +  R
Sbjct: 3   LVLGLDGAGKTSLLHSLSSERSLESVVPTTG----FNSVAIPTQDAIMELLEIGGSQNLR 58

Query: 76  AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135
                Y  G+ G + V D          ++ L +L +     + +V++ NK DL  +R V
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-PPDLPLVVLANKQDLPAARSV 117

Query: 136 NE 137
            E
Sbjct: 118 QE 119

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 24/123 (19%)

Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQER 73
           ++G    GK+ +L R    E  + + PTIG  VE   Y+N+       K Q+WD  GQ  
Sbjct: 4   ILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTYKNL-------KFQVWDLGGQTS 55

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV-GNK 126
            R     YY      + V D T R     +K  L       EL++      A++LV  NK
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKD------AVLLVFANK 109

Query: 127 SDL 129
            D+
Sbjct: 110 QDM 112

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PTZ00099	176	rab6; Provisional	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
PRK15494	339	era GTPase Era; Provisional	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.87
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.85
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
PRK00089	292	era GTPase Era; Reviewed	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.78
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.78
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.78
PRK12317	425	elongation factor 1-alpha; Reviewed	99.78
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.77
PRK10218	607	GTP-binding protein; Provisional	99.77
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.76
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.73
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.73
PRK12736	394	elongation factor Tu; Reviewed	99.73
COG2262	411	HflX GTPases [General function prediction only]	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
PRK12735	396	elongation factor Tu; Reviewed	99.72
CHL00071	409	tufA elongation factor Tu	99.71
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.68
PRK00049	396	elongation factor Tu; Reviewed	99.68
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.65
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.65
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.65
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.64
PLN03126	478	Elongation factor Tu; Provisional	99.64
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
PRK13351	687	elongation factor G; Reviewed	99.63
PLN03127	447	Elongation factor Tu; Provisional	99.63
COG1163	365	DRG Predicted GTPase [General function prediction	99.63
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.63
PTZ00141	446	elongation factor 1- alpha; Provisional	99.62
COG0536	369	Obg Predicted GTPase [General function prediction	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.62
KOG1145	683	consensus Mitochondrial translation initiation fac	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.6
PRK12739	691	elongation factor G; Reviewed	99.58
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.57
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.57
PRK09866	741	hypothetical protein; Provisional	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.55
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.54
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.54
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.54
PRK09602	396	translation-associated GTPase; Reviewed	99.52
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.51
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.49
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.48
PRK12740	668	elongation factor G; Reviewed	99.48
PRK00007	693	elongation factor G; Reviewed	99.47
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.44
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.44
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.43
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.43
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.42
PRK14845	1049	translation initiation factor IF-2; Provisional	99.42
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.41
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.4
PTZ00258	390	GTP-binding protein; Provisional	99.39
PRK13768	253	GTPase; Provisional	99.39
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.39
KOG0090	238	consensus Signal recognition particle receptor, be	99.39
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.36
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.32
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.32
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.32
PRK09601	364	GTP-binding protein YchF; Reviewed	99.31
PTZ00416	836	elongation factor 2; Provisional	99.31
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.31
PRK07560	731	elongation factor EF-2; Reviewed	99.31
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.3
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.3
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.28
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.27
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.27
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.26
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.25
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.22
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.21
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.2
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.19
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.17
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.17
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.16
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.15
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.15
KOG0410	410	consensus Predicted GTP binding protein [General f	99.14
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.1
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.08
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.03
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.96
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.96
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.96
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.95
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.93
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.92
PRK12289	352	GTPase RsgA; Reviewed	98.91
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.9
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.88
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.87
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.87
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.87
KOG2486	320	consensus Predicted GTPase [General function predi	98.84
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.82
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.81
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.8
PRK12288	347	GTPase RsgA; Reviewed	98.79
PRK00098	298	GTPase RsgA; Reviewed	98.79
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.73
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.72
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.72
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.71
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.7
KOG1143	591	consensus Predicted translation elongation factor	98.64
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.64
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.59
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.56
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.56
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.53
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.52
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.52
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.5
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.49
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.49
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.46
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.45
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.45
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.43
COG1161	322	Predicted GTPases [General function prediction onl	98.41
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.38
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.38
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.38
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.34
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.33
KOG0460	449	consensus Mitochondrial translation elongation fac	98.31
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.31
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.28
PRK01889	356	GTPase RsgA; Reviewed	98.28
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.28
PRK10416	318	signal recognition particle-docking protein FtsY;	98.26
PRK13796	365	GTPase YqeH; Provisional	98.26
PRK12288	347	GTPase RsgA; Reviewed	98.25
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.25
cd03112	158	CobW_like The function of this protein family is u	98.25
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.25
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.24
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.22
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.22
PRK14974	336	cell division protein FtsY; Provisional	98.21
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.21
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.2
COG1162	301	Predicted GTPases [General function prediction onl	98.19
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.17
PRK12289	352	GTPase RsgA; Reviewed	98.15
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.15
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.14
PRK13796	365	GTPase YqeH; Provisional	98.1
COG1162	301	Predicted GTPases [General function prediction onl	98.04
PRK13695	174	putative NTPase; Provisional	98.02
COG3523	1188	IcmF Type VI protein secretion system component Va	98.02
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.0
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.98
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.9
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.89
PRK00098	298	GTPase RsgA; Reviewed	97.88
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.82
cd03114	148	ArgK-like The function of this protein family is u	97.82
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.81
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.8
COG0523	323	Putative GTPases (G3E family) [General function pr	97.8
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.8
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.79
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.75
TIGR00959	428	ffh signal recognition particle protein. This mode	97.7
PRK10867	433	signal recognition particle protein; Provisional	97.68
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.67
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.64
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.63
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.62
cd03111	106	CpaE_like This protein family consists of proteins	97.61
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.61
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.59
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.57
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.57
KOG2484	435	consensus GTPase [General function prediction only	97.57
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.54
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.51
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.51
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.5
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.49
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.48
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.47
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.45
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.45
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.33
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.3
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.26
PRK08118	167	topology modulation protein; Reviewed	97.25
PRK07261	171	topology modulation protein; Provisional	97.21
cd03110	179	Fer4_NifH_child This protein family's function is	97.17
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.16
cd02036	179	MinD Bacterial cell division requires the formatio	97.16
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.15
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.14
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.08
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.05
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.04
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.03
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.01
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.98
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.96
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.91
cd01128	249	rho_factor Transcription termination factor rho is	96.91
KOG1533	290	consensus Predicted GTPase [General function predi	96.89
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.88
PRK01889	356	GTPase RsgA; Reviewed	96.87
PRK06217	183	hypothetical protein; Validated	96.86
PRK04195	482	replication factor C large subunit; Provisional	96.84
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.84
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.82
smart00382	148	AAA ATPases associated with a variety of cellular	96.81
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.81
PF00004	132	AAA: ATPase family associated with various cellula	96.8
PRK03839	180	putative kinase; Provisional	96.79
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.78
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.78
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.77
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.76
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.76
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.73
PRK14530	215	adenylate kinase; Provisional	96.73
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.72
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.71
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.7
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.7
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.7
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.68
COG1161	322	Predicted GTPases [General function prediction onl	96.68
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.67
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.67
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.65
PRK14738	206	gmk guanylate kinase; Provisional	96.65
PRK08233	182	hypothetical protein; Provisional	96.63
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.62
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.61
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.61
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.61
PRK13949	169	shikimate kinase; Provisional	96.61
PRK05480	209	uridine/cytidine kinase; Provisional	96.6
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.6
PRK14532	188	adenylate kinase; Provisional	96.6
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.58
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.55
PRK14531	183	adenylate kinase; Provisional	96.54
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.54
PRK14737	186	gmk guanylate kinase; Provisional	96.53
PRK13851	344	type IV secretion system protein VirB11; Provision	96.52
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.52
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.51
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.51

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-42  Score=253.06  Aligned_cols=175  Identities=50%  Similarity=0.822  Sum_probs=167.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      +..++|.|||+|+|+.|||||.|+.+|.+..|.+.+..|+|+++..+.+.++++.+++++|||+|+++|+++..+|++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVED  164 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  164 (222)
                      |++|+|||+++.+||..+..|+.++.++....+|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.++.+
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999888999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q 027503          165 AFLQMINQIHQTTIQK  180 (222)
Q Consensus       165 ~~~~l~~~i~~~~~~~  180 (222)
                      .|..|...+..+....
T Consensus       163 ~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHHHHHhcccC
Confidence            9999988887655443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-40  Score=240.06  Aligned_cols=173  Identities=45%  Similarity=0.745  Sum_probs=163.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....+||++||+.+||||||+.++..+.|.+...+|++-.+..+.+.+++..++|.||||+|+++|..+.++|+++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            45789999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |+|||+++.+||..+..|+..+.+....++-+.|||||+||.+.+.+..+++..++...++.|+++||++|.|+.++|..
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            99999999999999999999999988777778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 027503          169 MINQIHQTTIQKS  181 (222)
Q Consensus       169 l~~~i~~~~~~~~  181 (222)
                      |.+.+........
T Consensus       162 Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  162 IAEKLPCSDPQER  174 (200)
T ss_pred             HHHhccCcccccc
Confidence            9998876654443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-39  Score=240.82  Aligned_cols=181  Identities=49%  Similarity=0.811  Sum_probs=172.3

Q ss_pred             CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503            2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY   81 (222)
Q Consensus         2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   81 (222)
                      +.+..+++++.+||+++|+++||||+|+.+|..+.|...+..|.++++..+.+.+++..+.+++|||+|+++++.+...|
T Consensus         2 ~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sY   81 (207)
T KOG0078|consen    2 SAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAY   81 (207)
T ss_pred             CccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHH
Confidence            45666699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      +++|+++++|||+++..||+++..|+..+..+...++|.++||||+|+.+.+.++.+.++.+|.++|+.|+|+||++|.|
T Consensus        82 yrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N  161 (207)
T KOG0078|consen   82 YRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN  161 (207)
T ss_pred             HhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh
Q 027503          162 VEDAFLQMINQIHQTTIQKSL  182 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~~~~~~  182 (222)
                      |.+.|-.|++.+.......+.
T Consensus       162 I~eaF~~La~~i~~k~~~~~~  182 (207)
T KOG0078|consen  162 IEEAFLSLARDILQKLEDAEL  182 (207)
T ss_pred             HHHHHHHHHHHHHhhcchhhh
Confidence            999999999999975555433

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-39  Score=239.84  Aligned_cols=180  Identities=64%  Similarity=0.993  Sum_probs=173.8

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      .++++++|.+||+++|++++|||-|+.+|..++|...+.+|+++++....+.++++.++.+||||+|+++|+++..+|++
T Consensus         6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      ++.++++|||++...+|+.+..|+.+++.+.+..+++++||||+||.+.+.++.++++.++...++.|+++||.++.++.
T Consensus        86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhh
Q 027503          164 DAFLQMINQIHQTTIQKSLC  183 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~~~~~  183 (222)
                      ++|+.++..++....++...
T Consensus       166 ~aF~~~l~~I~~~vs~k~~~  185 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVSKKQLD  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999999999888877665

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-38  Score=233.78  Aligned_cols=169  Identities=40%  Similarity=0.664  Sum_probs=159.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      -+.+||++||+.+|||||||+++....|...+.+|+|+++...++.+.+..+.+++|||+|+++|+.+.++|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||+++..||++..+|+..+....+. ++-+++||||.||.+.+++..++....+.++++.|+++||+.|.||.++|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            999999999999999999999888765 4777889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 027503          169 MINQIHQTTI  178 (222)
Q Consensus       169 l~~~i~~~~~  178 (222)
                      |...+.+...
T Consensus       180 Iaa~l~~~~~  189 (221)
T KOG0094|consen  180 IAAALPGMEV  189 (221)
T ss_pred             HHHhccCccc
Confidence            8777766554

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=224.66  Aligned_cols=176  Identities=45%  Similarity=0.699  Sum_probs=163.8

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027503            1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSS   80 (222)
Q Consensus         1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   80 (222)
                      |++.+ ..++..+||+++|.+|+|||||+.+|..+.|.+....++++++..+.+.+++..+++.||||+|+++|+.+++.
T Consensus         1 M~~~s-s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS   79 (209)
T KOG0080|consen    1 MGDSS-SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS   79 (209)
T ss_pred             CCCCc-cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh
Confidence            55544 56778899999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           81 YYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      |++++.++|+|||++.+++|..+..|++++..+.. .++-.++|+||+|...++.++.++...|++.+++-|+++||++.
T Consensus        80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~  159 (209)
T KOG0080|consen   80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTR  159 (209)
T ss_pred             HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhh
Confidence            99999999999999999999999999999988874 55667899999999888999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 027503          160 LNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~~  177 (222)
                      +|+...|+.++.++.+.-
T Consensus       160 ~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  160 ENVQCCFEELVEKIIETP  177 (209)
T ss_pred             ccHHHHHHHHHHHHhcCc
Confidence            999999999999998643

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=4e-37  Score=239.66  Aligned_cols=181  Identities=61%  Similarity=0.972  Sum_probs=165.0

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027503            1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSS   80 (222)
Q Consensus         1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   80 (222)
                      |..+...+.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..
T Consensus         1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~   80 (216)
T PLN03110          1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA   80 (216)
T ss_pred             CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence            55666777889999999999999999999999999988788899999988888999998899999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503           81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                      +++.++++|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.
T Consensus        81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~  160 (216)
T PLN03110         81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT  160 (216)
T ss_pred             HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999999999888776679999999999998777888889999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhhh
Q 027503          161 NVEDAFLQMINQIHQTTIQKS  181 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~~~~  181 (222)
                      |++++|++++..+.+....+.
T Consensus       161 ~v~~lf~~l~~~i~~~~~~~~  181 (216)
T PLN03110        161 NVEKAFQTILLEIYHIISKKA  181 (216)
T ss_pred             CHHHHHHHHHHHHHHHhhccc
Confidence            999999999999987654333

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=226.62  Aligned_cols=175  Identities=51%  Similarity=0.800  Sum_probs=166.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +.+.+|++++|+.|||||+|+.+|....|.+.+..|.++++....+.++++.+++++|||+|++.|++++..|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |+|||++..++|..+..|+..++.+..+...++|++||+||...+.++.++.+.|++++++.++++||++++|+.|+|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998777999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhh
Q 027503          169 MINQIHQTTIQKSLC  183 (222)
Q Consensus       169 l~~~i~~~~~~~~~~  183 (222)
                      ....+++.....--.
T Consensus       163 ta~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVFD  177 (216)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999876654433

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.7e-36  Score=231.00  Aligned_cols=172  Identities=33%  Similarity=0.621  Sum_probs=157.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++++.+||+|+|+.|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            46788999999999999999999999988887777888888877888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||++++.+|+.+..|+..+..... +.|++|||||+|+.+.+.++.++++.++...+++|+++||++|.||+++|+
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999999999999977654 599999999999988788889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 027503          168 QMINQIHQTTIQK  180 (222)
Q Consensus       168 ~l~~~i~~~~~~~  180 (222)
                      ++++.+.......
T Consensus       161 ~l~~~i~~~~~~~  173 (189)
T cd04121         161 ELARIVLMRHGRP  173 (189)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999887655533

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.9e-36  Score=231.24  Aligned_cols=195  Identities=32%  Similarity=0.582  Sum_probs=163.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888999888887888887 7788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~  166 (222)
                      ||++++.+|+.+..|+..+....    ...+|++||+||+|+.+.+.+..+++..++...+ ..++++||++|.|+.++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876542    2568999999999997667778889999999998 689999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCcc
Q 027503          167 LQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC  220 (222)
Q Consensus       167 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  220 (222)
                      ++|++.+.+...........            .....+..++++.+++. ++||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETP------------EDGSVIDLKQTTTKKKS-KGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCC------------Ccccccccccceecccc-CCCC
Confidence            99999987654433332211            11233444555555555 6898

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3e-36  Score=218.82  Aligned_cols=172  Identities=35%  Similarity=0.652  Sum_probs=160.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .+...+||+++|++|+|||||++++....|...+..|++.++-.+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCC--CCCCCHHHHHHHHHHcC-CeEEEEccccCC
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTH--SREVNEEEGKILAETEG-LYFMETSAMQNL  160 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  160 (222)
                      +++|||++++.+|+.+..|..++.....    ...|++|+|||+|+.+  .+.++...++.|+...+ +||+++||+...
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999876653    5689999999999976  27899999999998876 899999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhh
Q 027503          161 NVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~~  179 (222)
                      +|.+.|+.+.+.+++....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999998877654

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1e-35  Score=228.83  Aligned_cols=167  Identities=40%  Similarity=0.759  Sum_probs=153.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +.|+++|+.|||||||+++|..+.|...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899988888888999998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |++++.+|+.+..|+..+......++|++||+||+|+.+.+.+..+++..++... ++.|+++||++|.||.++|+++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776667999999999999877888888999999875 789999999999999999999999


Q ss_pred             HHHHhhhh
Q 027503          172 QIHQTTIQ  179 (222)
Q Consensus       172 ~i~~~~~~  179 (222)
                      .+......
T Consensus       161 ~~~~~~~~  168 (202)
T cd04120         161 DILKKMPL  168 (202)
T ss_pred             HHHHhCcc
Confidence            88765433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-36  Score=211.51  Aligned_cols=179  Identities=42%  Similarity=0.735  Sum_probs=168.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      +++.+.+||+++|..|+|||.|+++|..+.|++....++++++-.+++.+++..+++++|||+|+++|++++.+|++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++...+|+-+..|+.++..+...++--++|+||+|+.+.++++....++|+......|.++||++..+++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999998888889999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhc
Q 027503          167 LQMINQIHQTTIQKSLCAK  185 (222)
Q Consensus       167 ~~l~~~i~~~~~~~~~~~~  185 (222)
                      ..+.-++......+.....
T Consensus       162 ~~~a~rli~~ar~~d~v~~  180 (213)
T KOG0095|consen  162 LDLACRLISEARQNDLVNN  180 (213)
T ss_pred             HHHHHHHHHHHHhccchhh
Confidence            9998887766666655433

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=4.5e-35  Score=225.52  Aligned_cols=170  Identities=45%  Similarity=0.738  Sum_probs=153.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45789999999999999999999999998888888988888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++++|+.+..|+..+..... ..|++||+||+|+.+...+..+++..++...+++|+++||++|.|+.++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            999999999999999999998876554 4899999999999876777788888899888999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 027503          169 MINQIHQTTIQ  179 (222)
Q Consensus       169 l~~~i~~~~~~  179 (222)
                      |++.+......
T Consensus       162 l~~~~~~~~~~  172 (199)
T cd04110         162 ITELVLRAKKD  172 (199)
T ss_pred             HHHHHHHhhhc
Confidence            99998755433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=212.43  Aligned_cols=172  Identities=48%  Similarity=0.777  Sum_probs=164.1

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      -+++..++.+|+|++|+|||+|+.+|....|...|..|+++++..+++.++|..+++.|||++|++.|+.+...|+++.+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++++|||+++.+||.++.+|++.++...+. +|-++||||.|.++.+.+..++++.|+...++.+|++|++.+.++..+|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDS-VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCcc-ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            999999999999999999999999988875 8999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027503          167 LQMINQIHQTTIQ  179 (222)
Q Consensus       167 ~~l~~~i~~~~~~  179 (222)
                      .-|.+.++.....
T Consensus       162 ~cit~qvl~~k~r  174 (198)
T KOG0079|consen  162 HCITKQVLQAKLR  174 (198)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998877633

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-36  Score=209.27  Aligned_cols=177  Identities=41%  Similarity=0.774  Sum_probs=168.5

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      -.+.++++.+|++++|+..+|||||+.++.+..|......|.|+++..+++.-..+.+++++|||.|++.++.++..+++
T Consensus        13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence            34678899999999999999999999999999999999999999999999888889999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +++++|++||+++.+||..++.|.-.+..+.....|+|+|+||||+.+++.++.+..+.++.++|+.||++||+.+.++.
T Consensus        93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk  172 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK  172 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 027503          164 DAFLQMINQIHQTTIQK  180 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~~  180 (222)
                      .+|+.++..+.+....+
T Consensus       173 ~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  173 QVFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999998776553

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.8e-34  Score=220.29  Aligned_cols=169  Identities=46%  Similarity=0.782  Sum_probs=153.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+|..+..|+..+........|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|+++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766668999999999998777788888889998889999999999999999999999999


Q ss_pred             HHHhhhhhh
Q 027503          173 IHQTTIQKS  181 (222)
Q Consensus       173 i~~~~~~~~  181 (222)
                      +..+.....
T Consensus       161 ~~~~~~~~~  169 (188)
T cd04125         161 IIKRLEEQE  169 (188)
T ss_pred             HHHHhhcCc
Confidence            876544433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.4e-34  Score=223.21  Aligned_cols=171  Identities=46%  Similarity=0.743  Sum_probs=152.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            4689999999999999999999999988888888888887777776 466789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.+|+++..|+..+.... ...+|++||+||+|+.+.+.+..++...++..++++|+++||++|.|+.++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887664 345788999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhh
Q 027503          169 MINQIHQTTIQKS  181 (222)
Q Consensus       169 l~~~i~~~~~~~~  181 (222)
                      |++.+.+......
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999887755443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.3e-35  Score=209.32  Aligned_cols=172  Identities=47%  Similarity=0.739  Sum_probs=159.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      -+.|.++++++|++-+|||+|++.+..+.+++-+.||++++++.+.+.+ +|..+++++|||+|+++|++++.+|++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            4578999999999999999999999999999999999999998777666 677899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      ++++|||+++.+||+.+..|+.+...+..  .++-+++||+|+|+...+.++.++++.++..+|..|+++|+++|.|+.+
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            99999999999999999999998766653  4455678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 027503          165 AFLQMINQIHQTTIQ  179 (222)
Q Consensus       165 ~~~~l~~~i~~~~~~  179 (222)
                      .|..|.+.+.....+
T Consensus       164 AF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988776

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=210.51  Aligned_cols=212  Identities=33%  Similarity=0.602  Sum_probs=182.0

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      .....+.+.|||+++|..-+|||||+-++..+.|...+..|..-.+..+.+.+++....+.||||+|+++|.++-+-|++
T Consensus         5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR   84 (218)
T KOG0088|consen    5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR   84 (218)
T ss_pred             ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence            34556789999999999999999999999999999888888877788888999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +++++++|||++|..||+.+..|..+++......+-++||+||+||.+++.++..++..++...|..|+++||+++.||.
T Consensus        85 gSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   85 GSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             CCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeecccc-ccccccCCccc
Q 027503          164 DAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHE-VTATKQSSCCY  221 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~cc~  221 (222)
                      ++|+.|..+..++...+.+..      ++-++.+++-...+...+.. .-+.-.++||.
T Consensus       165 elFe~Lt~~MiE~~s~~qr~~------~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~  217 (218)
T KOG0088|consen  165 ELFESLTAKMIEHSSQRQRTR------SPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR  217 (218)
T ss_pred             HHHHHHHHHHHHHhhhccccc------CCcCCCCCCcccchhccCCCcccccccCCccC
Confidence            999999999888776655432      11233344444455555554 33344456885

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.5e-34  Score=220.98  Aligned_cols=165  Identities=35%  Similarity=0.545  Sum_probs=144.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999988877777776444 3556778888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ++++.+|+.+..|+..+.....   .++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   5689999999999987777788888888988999999999999999999999999


Q ss_pred             HHHHHhhhh
Q 027503          171 NQIHQTTIQ  179 (222)
Q Consensus       171 ~~i~~~~~~  179 (222)
                      +.+.+.+..
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            887644444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.8e-34  Score=223.23  Aligned_cols=187  Identities=29%  Similarity=0.483  Sum_probs=153.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|.+|||||||+++|..+.+.. ..++.+.++....+    ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 46777666544333    3468999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-------------------SREVNEEEGKILAETEG-----  148 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  148 (222)
                      |++++++|+.+..|+..+......++|++||+||+|+.+                   .+.+..+++..++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999998888877666556699999999999975                   57788899999998876     


Q ss_pred             ---------CeEEEEccccCCCHHHHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCc
Q 027503          149 ---------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC  219 (222)
Q Consensus       149 ---------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  219 (222)
                               ++|+++||++|.||+++|..+++.+.+...++..+..  +.              ...-.++.+..+|++|
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~  219 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN--RT--------------QGTVNLPNPKRSKSKC  219 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh--hh--------------hccccCCCcccCCCCC
Confidence                     6899999999999999999999999876665554311  11              1123445577777999


Q ss_pred             c
Q 027503          220 C  220 (222)
Q Consensus       220 c  220 (222)
                      |
T Consensus       220 ~  220 (220)
T cd04126         220 C  220 (220)
T ss_pred             C
Confidence            8

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=3.7e-34  Score=214.19  Aligned_cols=164  Identities=53%  Similarity=0.838  Sum_probs=151.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999998888888888888777888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+.++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776666899999999999887778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027503          172 QIHQ  175 (222)
Q Consensus       172 ~i~~  175 (222)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.2e-34  Score=218.75  Aligned_cols=167  Identities=44%  Similarity=0.755  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+|+|++|||||||+++|.+..+.. .+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5567777777777788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ||++++.+++++..|+..+......++|+++|+||+|+...+.+..++...++...+++|+++||++|.|++++|++|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998877667999999999999766777778888899889999999999999999999999999


Q ss_pred             HHHHhhhh
Q 027503          172 QIHQTTIQ  179 (222)
Q Consensus       172 ~i~~~~~~  179 (222)
                      .+.+....
T Consensus       161 ~~~~~~~~  168 (191)
T cd04112         161 ELKHRKYE  168 (191)
T ss_pred             HHHHhccc
Confidence            98766433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.8e-34  Score=221.99  Aligned_cols=169  Identities=25%  Similarity=0.459  Sum_probs=150.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....+||+++|+.|||||+|+++|..+.|...+.|+.+.++. ..+.+++..+.+.||||+|++.|..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3357899999999999999999999999999889899876654 467889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 027503           88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFME  153 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  153 (222)
                      +|+|||++++.+|+.+ ..|+..+..... ..|++||+||+|+.+            .+.++.++++.++...++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999984 789999887654 489999999999864            256888999999999998 6999


Q ss_pred             EccccCC-CHHHHHHHHHHHHHHhhh
Q 027503          154 TSAMQNL-NVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       154 ~Sa~~~~-gi~~~~~~l~~~i~~~~~  178 (222)
                      |||++|. ||+++|..++..+.+...
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999998 899999999998875433

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=6.7e-34  Score=213.05  Aligned_cols=166  Identities=52%  Similarity=0.884  Sum_probs=152.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999998888899988887788888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|||++++.+|..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766679999999999998777777888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2e-33  Score=217.95  Aligned_cols=171  Identities=52%  Similarity=0.828  Sum_probs=155.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..++..+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45779999999999999999999999988888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++.++..+..|+..+........|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887666566999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 027503          169 MINQIHQTTIQ  179 (222)
Q Consensus       169 l~~~i~~~~~~  179 (222)
                      +++.+.+....
T Consensus       163 l~~~~~~~~~~  173 (210)
T PLN03108        163 TAAKIYKKIQD  173 (210)
T ss_pred             HHHHHHHHhhh
Confidence            99999866543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=8.1e-34  Score=215.21  Aligned_cols=164  Identities=32%  Similarity=0.531  Sum_probs=147.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....+||+++|++|||||||+++|..+.|...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            45678999999999999999999999999888888887555 46678889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027503           89 LLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMET  154 (222)
Q Consensus        89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  154 (222)
                      |+|||++++.+|+.+ ..|+..+..... ..|++||+||+|+.+            .+.++.+++..++...++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 789999987764 589999999999864            246889999999999995 89999


Q ss_pred             ccccCCC-HHHHHHHHHHHHH
Q 027503          155 SAMQNLN-VEDAFLQMINQIH  174 (222)
Q Consensus       155 Sa~~~~g-i~~~~~~l~~~i~  174 (222)
                      ||++|.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.3e-33  Score=219.88  Aligned_cols=164  Identities=34%  Similarity=0.546  Sum_probs=149.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888899999998888888864 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ||++++++|+.+..|+..+.....   .++|+++|+||+|+.+.+.+..+....++...+++++++||++|.|+.++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999877652   35789999999999877788888899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027503          169 MINQIHQT  176 (222)
Q Consensus       169 l~~~i~~~  176 (222)
                      ++..+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=214.84  Aligned_cols=168  Identities=34%  Similarity=0.553  Sum_probs=147.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3468999999999999999999999988777777776554 566778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+...+..+++..++...+++++++||++|.|+.++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999998887654 346899999999999776677777888888888899999999999999999999


Q ss_pred             HHHHHHHhhh
Q 027503          169 MINQIHQTTI  178 (222)
Q Consensus       169 l~~~i~~~~~  178 (222)
                      +++.+.+...
T Consensus       162 l~~~l~~~~~  171 (189)
T PTZ00369        162 LVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHhh
Confidence            9988865433

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.8e-33  Score=211.80  Aligned_cols=163  Identities=33%  Similarity=0.520  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999878878876444 45577888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++|+++||++|.||+++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998988887654 35699999999999987778888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027503          171 NQIHQ  175 (222)
Q Consensus       171 ~~i~~  175 (222)
                      +.+.+
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            88775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.2e-33  Score=213.03  Aligned_cols=160  Identities=34%  Similarity=0.590  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|+|||||+.++..+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888889887655 456778888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503           93 DITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHSR----------EVNEEEGKILAETEGL-YFMETSAMQNL  160 (222)
Q Consensus        93 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  160 (222)
                      |++++.||+.+ ..|+..+..... ++|++|||||+|+.+.+          .+..+++..++...++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999877654 59999999999996542          4788999999999998 69999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQIH  174 (222)
Q Consensus       161 gi~~~~~~l~~~i~  174 (222)
                      ||+++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.8e-33  Score=212.02  Aligned_cols=167  Identities=38%  Similarity=0.709  Sum_probs=149.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhH
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------DKLIKAQIWDTAGQERFRAITS   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   79 (222)
                      ++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+.          +..+.+.+||+||++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            578999999999999999999999999988888888888776666554          4568899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      .+++++|++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999887654 34589999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 027503          159 NLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~~  176 (222)
                      |.|++++|++|++.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.7e-33  Score=217.08  Aligned_cols=203  Identities=26%  Similarity=0.469  Sum_probs=158.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||+|+++|..+.|+..+.|+.+.++. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889999876654 56788899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      |++++++|+.+. .|...+.... ...|++||+||+|+.+.            ..++.+++..++.+.++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999984 5776665544 45999999999999642            13677889999999995 899999999


Q ss_pred             CC-CHHHHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCc
Q 027503          159 NL-NVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC  219 (222)
Q Consensus       159 ~~-gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  219 (222)
                      +. ||.++|+.++..++..... .... ...++.++-....+++..+....+..+..+.++|
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR-QLRR-TDSRRGLQRSAQLSGRPDRHGNEGEIHKDRAKSC  219 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC-cccc-ccccccccccccCCCcccccccccccccccCCcc
Confidence            88 4999999999987654432 2211 1222223333334445555444444555554455

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4e-33  Score=208.52  Aligned_cols=163  Identities=52%  Similarity=0.829  Sum_probs=150.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|+++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988776566899999999999877778888899999999999999999999999999999998


Q ss_pred             HHH
Q 027503          172 QIH  174 (222)
Q Consensus       172 ~i~  174 (222)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-34  Score=200.99  Aligned_cols=179  Identities=49%  Similarity=0.761  Sum_probs=169.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      .+.+++.+|++++|+.|+|||.|+++|+...|......++++++..+.+.++++.+++++|||+|+++|++..+.|++++
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      -+.++|||+++.++|..+..|+..++......+-+++++||.||...++++..++..|+.+..+.+.++|+.+|+++.|.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999999998877888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhh
Q 027503          166 FLQMINQIHQTTIQKSLCA  184 (222)
Q Consensus       166 ~~~l~~~i~~~~~~~~~~~  184 (222)
                      |-...+.+......-+..+
T Consensus       163 Fl~c~~tIl~kIE~GElDP  181 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDP  181 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCH
Confidence            9999999887766555443

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.4e-33  Score=208.11  Aligned_cols=160  Identities=41%  Similarity=0.767  Sum_probs=148.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||++++.++.+.+.+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888899888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+|+.+..|+..+........|+++|+||.|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887766669999999999998778888889999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5.8e-33  Score=207.59  Aligned_cols=163  Identities=41%  Similarity=0.774  Sum_probs=148.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+++.+..|+..+........|+++|+||+|+.+.+....+....++...+++++++||++|.|+.++|++++..
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999887765668999999999998777777788888888889999999999999999999999987


Q ss_pred             HHH
Q 027503          173 IHQ  175 (222)
Q Consensus       173 i~~  175 (222)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=4.7e-33  Score=207.19  Aligned_cols=161  Identities=39%  Similarity=0.707  Sum_probs=154.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ++++++|+.+..|+..+........|++||+||.|+.+.+.++.++++.++..++++|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998886699999999999988789999999999999999999999999999999999999987


Q ss_pred             H
Q 027503          174 H  174 (222)
Q Consensus       174 ~  174 (222)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=7.8e-33  Score=206.66  Aligned_cols=163  Identities=67%  Similarity=1.049  Sum_probs=150.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999999888888999888888889999988899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+.++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887766699999999999987777788888889888899999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.2e-33  Score=213.17  Aligned_cols=163  Identities=27%  Similarity=0.519  Sum_probs=143.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+++|+.|||||||+++|..+.|...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999999999999999888888887554 3456788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcc
Q 027503           91 VYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSA  156 (222)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  156 (222)
                      |||++++.+|+.+. .|+..+..... ++|++||+||.|+.+.            +.+..+++..++...+ ++|+++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 58887766543 5999999999999653            2366778899999988 58999999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i~~  175 (222)
                      ++|.|+.++|+++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.9e-33  Score=210.92  Aligned_cols=161  Identities=30%  Similarity=0.527  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|.++.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888886655 45778889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccc
Q 027503           92 YDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMETSAM  157 (222)
Q Consensus        92 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  157 (222)
                      ||++++.+|+.+ ..|+..+..... ..|+++|+||+|+.+            .+.++.+++.+++...++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789999987764 589999999999964            245888999999999997 79999999


Q ss_pred             cCCC-HHHHHHHHHHHHH
Q 027503          158 QNLN-VEDAFLQMINQIH  174 (222)
Q Consensus       158 ~~~g-i~~~~~~l~~~i~  174 (222)
                      +|.+ |.++|..+++.++
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=7.2e-33  Score=206.91  Aligned_cols=162  Identities=32%  Similarity=0.659  Sum_probs=148.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999998888888899899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcC-----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCS-----SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877653     4689999999999976566778888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027503          168 QMINQIH  174 (222)
Q Consensus       168 ~l~~~i~  174 (222)
                      +|++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.2e-32  Score=206.45  Aligned_cols=167  Identities=54%  Similarity=0.845  Sum_probs=152.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+..++....+.+||+||++.+..++..+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            46779999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++.++..+..|+..+......++|++||+||+|+.....+..++...++...+++++++|++++.|++++|.+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998776666999999999999866777888888899889999999999999999999999


Q ss_pred             HHHHHHH
Q 027503          169 MINQIHQ  175 (222)
Q Consensus       169 l~~~i~~  175 (222)
                      +++.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.4e-32  Score=205.33  Aligned_cols=163  Identities=48%  Similarity=0.820  Sum_probs=147.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.++..+..|+..+......++|+++|+||+|+.+.+....+.+..++...+. .++++||++|.|+.++|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999877666799999999999987777777888888888875 6899999999999999999


Q ss_pred             HHHH
Q 027503          169 MINQ  172 (222)
Q Consensus       169 l~~~  172 (222)
                      +.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.9e-32  Score=207.98  Aligned_cols=163  Identities=27%  Similarity=0.505  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|+.|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999998888888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-----CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-----REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++++.+|+++..|+..+........| ++|+||+|+...     .....++...++...+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998776555567 678999998531     11224566788888899999999999999999999


Q ss_pred             HHHHHHHHh
Q 027503          168 QMINQIHQT  176 (222)
Q Consensus       168 ~l~~~i~~~  176 (222)
                      ++++.+.+.
T Consensus       160 ~l~~~l~~~  168 (182)
T cd04128         160 IVLAKAFDL  168 (182)
T ss_pred             HHHHHHHhc
Confidence            999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.7e-32  Score=212.85  Aligned_cols=164  Identities=34%  Similarity=0.579  Sum_probs=146.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +..+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            68899999999999999999999999998888899988888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|||++++.+|+.+..|+..+.... .++|++||+||+|+.+ +.+..+.. .++...+++|+++||++|.|+.++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999988765 4599999999999864 33444444 6777788999999999999999999999


Q ss_pred             HHHHHHh
Q 027503          170 INQIHQT  176 (222)
Q Consensus       170 ~~~i~~~  176 (222)
                      ++.+.+.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988644

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.1e-32  Score=202.64  Aligned_cols=160  Identities=55%  Similarity=0.874  Sum_probs=147.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.++..+..|+..+......++|+++|+||+|+.....+..+++..++...+++++++|++++.|+.++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877776779999999999998777788888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.4e-32  Score=203.36  Aligned_cols=160  Identities=36%  Similarity=0.561  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765 445566788888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+.++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887664 356899999999999776667777788888888899999999999999999999987


Q ss_pred             HH
Q 027503          172 QI  173 (222)
Q Consensus       172 ~i  173 (222)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.7e-32  Score=205.94  Aligned_cols=159  Identities=28%  Similarity=0.508  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|..+.|...+.|+.+..+. ..+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999998888888876554 45677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      |++++.+|+.+. .|+..+.... .++|++||+||+|+.+.            +.+..+++..++...+ +.|+++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5888887654 35899999999998653            4567788888988887 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|+.++|+.++..+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=7.5e-32  Score=206.51  Aligned_cols=164  Identities=34%  Similarity=0.623  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5677777777777889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS----REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+...    ..+..+++..++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887654 35899999999998642    34555677888888889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027503          168 QMINQIHQTT  177 (222)
Q Consensus       168 ~l~~~i~~~~  177 (222)
                      ++++.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999887543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.1e-31  Score=200.03  Aligned_cols=163  Identities=59%  Similarity=0.925  Sum_probs=149.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888788888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+++.+..|+..+..+...++|+++|+||+|+........+.+..++...+++++++|+++|.|+.++|+++++.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887775679999999999997766777888888999899999999999999999999999988


Q ss_pred             HHH
Q 027503          173 IHQ  175 (222)
Q Consensus       173 i~~  175 (222)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            764

Rab GTPases are implicated in vesicle trafficking.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=6e-32  Score=201.74  Aligned_cols=162  Identities=34%  Similarity=0.552  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998888777777775544 45677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988886653 45699999999999987666777777888888889999999999999999999998


Q ss_pred             HHHH
Q 027503          171 NQIH  174 (222)
Q Consensus       171 ~~i~  174 (222)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            7653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=9.2e-32  Score=200.13  Aligned_cols=159  Identities=36%  Similarity=0.642  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG--DKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888888888877777776  777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |||++++++++.+..|+..+..... ++|+++|+||+|+.....+..+++..++...+++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998876544 499999999999987777788888899999999999999999999999999987


Q ss_pred             HH
Q 027503          171 NQ  172 (222)
Q Consensus       171 ~~  172 (222)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.6e-31  Score=200.86  Aligned_cols=162  Identities=35%  Similarity=0.623  Sum_probs=144.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998889999888888888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      +++++++..+..|+..+.... ....|+++|+||+|+.+...  ...+++..++...+.+++++||++|.|+.++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876543 44578999999999865433  345667788888889999999999999999999999


Q ss_pred             HHHHH
Q 027503          171 NQIHQ  175 (222)
Q Consensus       171 ~~i~~  175 (222)
                      ..+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.6e-31  Score=200.53  Aligned_cols=163  Identities=35%  Similarity=0.674  Sum_probs=145.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ++..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45789999999999999999999999998888888888887778888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVE  163 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  163 (222)
                      ++|||++++.+++.+..|...+....    ..++|+++|+||+|+. .+.+..+++..++...+ .+++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999998876544    2458999999999986 46667788889988887 489999999999999


Q ss_pred             HHHHHHHHH
Q 027503          164 DAFLQMINQ  172 (222)
Q Consensus       164 ~~~~~l~~~  172 (222)
                      ++|+.+++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=9.6e-32  Score=200.38  Aligned_cols=161  Identities=35%  Similarity=0.540  Sum_probs=141.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||.+.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999998877767664 55567788888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.++.++..|+..+.... ..++|+++|+||+|+.+...+...+...++...+++++++||++|.|+.++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887654 35699999999999976666677778888888889999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.6e-31  Score=203.71  Aligned_cols=166  Identities=30%  Similarity=0.523  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++.+..++..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988877777666543 35554 6778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHH
Q 027503           92 YDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS----REVNEEEGKILAETEGL-YFMETSAMQNLNVEDA  165 (222)
Q Consensus        92 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  165 (222)
                      ||++++.+|+++. .|+..+.... .++|+++|+||+|+...    +.+...++..++...++ +++++||++|.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 4887776544 45899999999998653    24667788899999988 8999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 027503          166 FLQMINQIHQTTIQK  180 (222)
Q Consensus       166 ~~~l~~~i~~~~~~~  180 (222)
                      |+.+++.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999887554443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=6.1e-31  Score=204.29  Aligned_cols=170  Identities=46%  Similarity=0.743  Sum_probs=147.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..+....+||+|+|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            344567889999999999999999999998764 5567777777777888888888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHH-HHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           86 LGALLVYDITRRATFENTKK-WLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      |++|+|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...+++|+++||++|.|++
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999875 666665443 3458999999999998767777788888888899999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (211)
T PLN03118        167 QCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.6e-31  Score=200.10  Aligned_cols=160  Identities=34%  Similarity=0.629  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888788888888887777778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |+++++++..+..|+..+..... ++|+++|+||+|+.+ .... .....++...+++++++||++|.|+.++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 599999999999974 3333 33456777778899999999999999999999988


Q ss_pred             HHH
Q 027503          173 IHQ  175 (222)
Q Consensus       173 i~~  175 (222)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=9.5e-32  Score=205.40  Aligned_cols=160  Identities=35%  Similarity=0.548  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      .||+|+|++|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998877788766543 45667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      |++++.+|+.+. .|+..+..... +.|+++|+||+|+.+..            .+..++...++...+ ++|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999886 58888876543 58999999999997543            345666778887776 7899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIH  174 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~  174 (222)
                      |.|++++|+++++.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998887

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2e-31  Score=198.74  Aligned_cols=161  Identities=41%  Similarity=0.614  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988777767665 334566677888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |++++++++.+..|+..+.... ....|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988876654 346899999999999876677778888888888999999999999999999999998


Q ss_pred             HHH
Q 027503          172 QIH  174 (222)
Q Consensus       172 ~i~  174 (222)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.4e-31  Score=198.09  Aligned_cols=160  Identities=36%  Similarity=0.560  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+.+...++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777777777788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+++.+..|+..+..... +.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998876543 4899999999998532   1344556677778999999999999999999999988


Q ss_pred             HHHh
Q 027503          173 IHQT  176 (222)
Q Consensus       173 i~~~  176 (222)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.7e-31  Score=197.45  Aligned_cols=160  Identities=42%  Similarity=0.724  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+|..+..|+..+......+.|+++|+||+|+.+......++...++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876665569999999999997667777888888888889999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-33  Score=198.79  Aligned_cols=182  Identities=36%  Similarity=0.627  Sum_probs=162.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC---------CeEEEEEEEeCCChhhhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG---------DKLIKAQIWDTAGQERFR   75 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~   75 (222)
                      .+.+++|.+|.+.+|++|+|||+|+.++..+.|......|+++++..+.+-++         +..+.+++|||+|+++|+
T Consensus         2 ~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR   81 (219)
T KOG0081|consen    2 GDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR   81 (219)
T ss_pred             CCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH
Confidence            46788999999999999999999999999999999999999999887776652         345788999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                      +++..++++|=+++++||+++..||.+++.|+..+..+. -++.-+++++||+|+++.+.++.+.+.+++..+++|||++
T Consensus        82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen   82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence            999999999999999999999999999999999987765 3446788899999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027503          155 SAMQNLNVEDAFLQMINQIHQTTIQKSLCAKM  186 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~  186 (222)
                      ||-+|.+|.+.++.+++.++++..+---+...
T Consensus       162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s~~  193 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMKRIEQCVEKSEI  193 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999877654443333

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.7e-31  Score=198.56  Aligned_cols=158  Identities=34%  Similarity=0.501  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777777765433 445666777789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |++++++++.+..|+..+.....   .++|+++|+||+|+.+.+.+..+++..++...+++|+++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999888876542   568999999999997766777778888888888999999999999999999998


Q ss_pred             HH
Q 027503          170 IN  171 (222)
Q Consensus       170 ~~  171 (222)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-31  Score=185.27  Aligned_cols=181  Identities=50%  Similarity=0.774  Sum_probs=169.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..++.|.+|-+++|+-|+|||.|++.|....|-..-..++++++..+.+.+.+..+++++|||+|+++|+...+.|++++
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            45788999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      .+.++|||++.+.++..+..|+...+........+++++||.|+...+.++.+++++|+.+.|+.|+++|+++|.++.+.
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            99999999999999999999999998888777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcc
Q 027503          166 FLQMINQIHQTTIQKSLCAKM  186 (222)
Q Consensus       166 ~~~l~~~i~~~~~~~~~~~~~  186 (222)
                      |-...+.++.....-.+.-+.
T Consensus       165 fle~akkiyqniqdgsldlna  185 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGSLDLNA  185 (215)
T ss_pred             HHHHHHHHHHhhhcCcccccc
Confidence            999999999887766555333

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.4e-31  Score=200.59  Aligned_cols=158  Identities=31%  Similarity=0.539  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+.++..+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999888888874 444456678888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      |++++++|..+. .|+..+.... .+.|++||+||+|+.+.            +.+..+++..++...+ ++|+++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 5888776654 35999999999999642            2477888999999988 4899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQ  172 (222)
Q Consensus       159 ~~gi~~~~~~l~~~  172 (222)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=6e-31  Score=195.92  Aligned_cols=162  Identities=44%  Similarity=0.787  Sum_probs=148.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998877778888778788888999899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      +|++++.++..+..|+..+.......+|+++++||+|+......+.++...++...+++++++|+++|.|+.++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776567999999999999866777788888889988999999999999999999999988


Q ss_pred             HH
Q 027503          172 QI  173 (222)
Q Consensus       172 ~i  173 (222)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.4e-31  Score=198.34  Aligned_cols=162  Identities=37%  Similarity=0.665  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhhhcCCcEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-AITSSYYRGALGALL   90 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~   90 (222)
                      .+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999887788888888888888889988999999999999886 578889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc---CCCHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAF  166 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~  166 (222)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887764 45699999999999987777888888999999999999999999   89999999


Q ss_pred             HHHHHHH
Q 027503          167 LQMINQI  173 (222)
Q Consensus       167 ~~l~~~i  173 (222)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=5.3e-31  Score=195.63  Aligned_cols=160  Identities=33%  Similarity=0.539  Sum_probs=139.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            3799999999999999999999998877777776544 356677888888899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||+++..++..+..|+..+.... ..+.|+++|+||+|+.+ +.....++..++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999998988887664 35689999999999975 45566777888888899999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7.5e-31  Score=195.52  Aligned_cols=161  Identities=37%  Similarity=0.572  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988776666666533 345567788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+....++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35689999999999977666677778888888889999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.1e-31  Score=203.04  Aligned_cols=167  Identities=21%  Similarity=0.270  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhcC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYRG   84 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~   84 (222)
                      +||+|+|.+|||||||+++|.++.+...+.|+.+.+.+...+.+++..+.+.+|||||.+.+.        ......+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888888777776777888888899999999965432        123445789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNL  160 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  160 (222)
                      +|++|+|||++++.+|+.+..|+..+....   ..++|++||+||+|+.+.+.+..++...++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887664   4569999999999997766666666776654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhh
Q 027503          161 NVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~~  179 (222)
                      |++++|+.+++.+..+-..
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999988754433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2e-30  Score=192.53  Aligned_cols=161  Identities=39%  Similarity=0.705  Sum_probs=144.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|+|||||+++|.+..+...+.++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777677767777777778788889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.+++.+..|+..+......++|+++|+||+|+.....+..++...++...+++++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776679999999999998766777777888888889999999999999999999999876


Q ss_pred             H
Q 027503          173 I  173 (222)
Q Consensus       173 i  173 (222)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=1.7e-30  Score=193.72  Aligned_cols=160  Identities=31%  Similarity=0.589  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+... +..+.+.+|||||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  6777788888888776666664 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|||++++.++..+..|+..+.... .++|+++|+||+|+.+...+....+..+....+++++++||++|.|+.++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998887765 448999999999997766777777777888888999999999999999999999


Q ss_pred             HHHH
Q 027503          170 INQI  173 (222)
Q Consensus       170 ~~~i  173 (222)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=1.4e-30  Score=200.06  Aligned_cols=156  Identities=31%  Similarity=0.583  Sum_probs=139.6

Q ss_pred             EcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027503           18 IGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR   97 (222)
Q Consensus        18 lG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (222)
                      +|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889998888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503           98 ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus        98 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      .+|+.+..|+..+..... ++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||.++|++|+..+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999987654 599999999999864 3444433 467788889999999999999999999999988643

Ran is involved in the active transport of proteins through nuclear pores.

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=3.1e-30  Score=193.65  Aligned_cols=164  Identities=37%  Similarity=0.681  Sum_probs=145.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888887788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++++.+++.+..|...+.....    .++|+++|+||+|+........++...+....+ ++++++|+++|.|+.++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999998888877655432    368999999999998656667777888888887 7899999999999999999


Q ss_pred             HHHHHHHHh
Q 027503          168 QMINQIHQT  176 (222)
Q Consensus       168 ~l~~~i~~~  176 (222)
                      ++++.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=5.6e-30  Score=191.85  Aligned_cols=166  Identities=42%  Similarity=0.766  Sum_probs=148.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++.+.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+.+..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   82 (169)
T cd04114           3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA   82 (169)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            35678999999999999999999999888777777888777777788888888899999999999999988999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+....+......+++++|+++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            99999999999999999999988877766799999999999987777777777888887788999999999999999999


Q ss_pred             HHHHHH
Q 027503          168 QMINQI  173 (222)
Q Consensus       168 ~l~~~i  173 (222)
                      ++.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=1.6e-30  Score=195.72  Aligned_cols=159  Identities=33%  Similarity=0.569  Sum_probs=138.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   94 (222)
                      |+|+|++|||||||+++|.++.+...+.++.... ....+..++..+.+.+|||||++.+..++..++..+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999999988777776444 345677788888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503           95 TRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETSAMQNL  160 (222)
Q Consensus        95 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  160 (222)
                      +++++|+.+. .|+..+..... ++|+++|+||+|+....            .+..+++..++...+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 59888877654 59999999999996532            3677788889999986 89999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQIHQ  175 (222)
Q Consensus       161 gi~~~~~~l~~~i~~  175 (222)
                      |++++|+.+++.+++
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=2.8e-30  Score=197.82  Aligned_cols=158  Identities=28%  Similarity=0.457  Sum_probs=129.8

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHhhCc-----CCCCCCCCcce-eeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLS-RFARDE-----FRLDSKPTIGV-EFAYRN--------IRVGDKLIKAQIWDTAGQERFRA   76 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   76 (222)
                      .+||+++|+.|||||||+. ++.+..     +...+.||.+. +.+...        +.+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 555443     34556677752 322222        25678889999999999875  3


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 027503           77 ITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH-------------------SREVN  136 (222)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~  136 (222)
                      +...+++++|++|+|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            5667899999999999999999999996 59888876653 589999999999964                   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          137 EEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      .++++.+++..+++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=8.7e-30  Score=189.36  Aligned_cols=159  Identities=50%  Similarity=0.816  Sum_probs=142.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777888888887777788888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |++++.+++.+..|+..+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|+.++++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999887765 46699999999999974 455677888888889999999999999999999999887


Q ss_pred             H
Q 027503          172 Q  172 (222)
Q Consensus       172 ~  172 (222)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=3.3e-30  Score=192.55  Aligned_cols=160  Identities=33%  Similarity=0.499  Sum_probs=137.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCCcEEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGALGALLVY   92 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~   92 (222)
                      ||+++|++|||||||+++++...+...+.++.... ....+.+++..+.+.+||+||++. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999888766666665433 356677888888999999999885 3455778899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC-CCHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQM  169 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l  169 (222)
                      |++++.+|+.+..|+..+....  ..++|+++|+||+|+.+.+.+..+++..++...+++|+++|+++| .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887764  346999999999999777777888888999999999999999999 5999999999


Q ss_pred             HHHHH
Q 027503          170 INQIH  174 (222)
Q Consensus       170 ~~~i~  174 (222)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=6.4e-30  Score=202.33  Aligned_cols=160  Identities=27%  Similarity=0.432  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998877777775 556677888888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHH---------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCH
Q 027503           93 DITRRATFENTKKWLRELREF---------CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNV  162 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  162 (222)
                      |+++.++|+.+..|+..+...         ...++|++||+||+|+...+.+..++...++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         224689999999999976566777777777654 4688999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          163 EDAFLQMINQI  173 (222)
Q Consensus       163 ~~~~~~l~~~i  173 (222)
                      +++|++|+..+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=1.2e-29  Score=190.14  Aligned_cols=162  Identities=33%  Similarity=0.537  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|.+|||||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            3789999999999999999999999877777776543 456677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      ||++++++++.+..|...+.... ..++|+++++||+|+.+.+....++...++...+ ++++++||++|.|+.++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887643 4569999999999998767777777888888887 899999999999999999999


Q ss_pred             HHHHH
Q 027503          170 INQIH  174 (222)
Q Consensus       170 ~~~i~  174 (222)
                      +..+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.97  E-value=1.2e-29  Score=187.12  Aligned_cols=158  Identities=54%  Similarity=0.894  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+...+.++.+.+.....+...+....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |+++++++..+..|+..+........|+++++||+|+........++...++...+++++++|++++.|+.++|++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999998887756699999999999975566778888889988899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=6.8e-30  Score=189.68  Aligned_cols=153  Identities=21%  Similarity=0.382  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|+.|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887665443 3333 46788888888999999999874     35678899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLT--HSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |++++.+|+.+..|+..+..... ..+|+++|+||.|+.  ..+.+..++++.+++.. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877653 558999999999985  35678888888898876 589999999999999999999


Q ss_pred             HHHH
Q 027503          169 MINQ  172 (222)
Q Consensus       169 l~~~  172 (222)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=1.1e-29  Score=198.40  Aligned_cols=165  Identities=30%  Similarity=0.365  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc-CCcEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR-GALGALL   90 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~   90 (222)
                      +||+++|++|||||||+++|.++.+. ..+.++.+.+.....+.+++....+.+||+||++  ..+...++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999888876 5555666556777788888888999999999988  333445666 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++|+++||++|.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887764 3569999999999998777777888888888889999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 027503          170 INQIHQTTIQ  179 (222)
Q Consensus       170 ~~~i~~~~~~  179 (222)
                      ++.+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9988654433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=4.5e-30  Score=192.76  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=139.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ..+||+++|.+|||||||+++|.+..+. ..+.+|.+.++....+.+++..+.+.+||++|++.+..++..++.++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999999999988 778888888887777888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.+++.+..|+..+..  ..++|+++|+||+|+.+...........++...++ .++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            99999999999998888876532  23589999999999965444434455677777776 4799999999999999999


Q ss_pred             HHHHHH
Q 027503          169 MINQIH  174 (222)
Q Consensus       169 l~~~i~  174 (222)
                      +++.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=1.2e-29  Score=191.07  Aligned_cols=157  Identities=30%  Similarity=0.516  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988887776665 4555567788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      |++++.+|+.+. .|+..+.... .++|+++|+||+|+..            .+.+..+++..++...+. +|+++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 6888777543 3489999999999863            346777889999999887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMIN  171 (222)
Q Consensus       159 ~~gi~~~~~~l~~  171 (222)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.2e-29  Score=190.98  Aligned_cols=159  Identities=32%  Similarity=0.531  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||||++.+..++..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998777767664 333446778888888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      |++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.            ..+..+++..++...+. +|+++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 588877665 456999999999998643            25667788888888885 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=6.3e-32  Score=186.59  Aligned_cols=170  Identities=42%  Similarity=0.744  Sum_probs=155.4

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503           16 VMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        16 ~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   94 (222)
                      +++|++++|||.|+-++..+.|. .+..+++++++..+.++.++..+++++|||+|+++|++.+..|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999998877765 44588899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503           95 TRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus        95 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .+..||++.+.|+.++.++..+.+.+.+++||+|+.+++.+..++.+.++..+++||+++||++|.+++-.|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhhhhhhhhhc
Q 027503          175 QTTIQKSLCAK  185 (222)
Q Consensus       175 ~~~~~~~~~~~  185 (222)
                      .....-.+.++
T Consensus       161 k~~~~~~~~~~  171 (192)
T KOG0083|consen  161 KLKMGAPPEGE  171 (192)
T ss_pred             HhccCCCCCCc
Confidence            66554444433

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=7.6e-29  Score=184.48  Aligned_cols=162  Identities=36%  Similarity=0.540  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|....+...+.++.+. ........++..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999998887776666643 34456677888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |++++.++..+..|+..+.... ..++|+++|+||+|+.............+...++++++++||++|.|+.++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887764 356999999999999765556677778888888899999999999999999999998


Q ss_pred             HHHH
Q 027503          172 QIHQ  175 (222)
Q Consensus       172 ~i~~  175 (222)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=8.4e-29  Score=183.43  Aligned_cols=158  Identities=39%  Similarity=0.593  Sum_probs=140.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+|+|++|||||||+++|++..+.....++.. +.....+..++..+.+.+||+||.+.+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5566677777778899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      +++++++..+..|+..+..... .+.|+++|+||+|+........+.+..++...+.+++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999998888877654 569999999999998767777888888988888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.5e-28  Score=187.48  Aligned_cols=164  Identities=33%  Similarity=0.558  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      .||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887766666654333 346677788888999999999988877777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH----------SREVNEEEGKILAETEGL-YFMETSAMQNL  160 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  160 (222)
                      |+++.++++.+. .|+..+...... +|+++|+||+|+.+          .+.+..+++..+++..+. +|+++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~-~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPN-VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCC-CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 588888766544 99999999999854          234556778888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q 027503          161 NVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~  178 (222)
                      |++++|+++.+.+...+.
T Consensus       160 ~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         160 GVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CHHHHHHHHHHHHhcccC
Confidence            999999999988765443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.2e-28  Score=187.36  Aligned_cols=168  Identities=23%  Similarity=0.342  Sum_probs=132.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      .+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998887644 577666665555544 3456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEccccCCCHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET------EGLYFMETSAMQNLNVE  163 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~  163 (222)
                      |+|++++.++..+..|+..+.... ..++|++||+||+|+.+.  ...++...+...      .+++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999988888887765543 356899999999998642  333434433321      23568999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q 027503          164 DAFLQMINQIHQTTIQKSL  182 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~~~~  182 (222)
                      ++|++|++.+.+.+....+
T Consensus       160 ~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         160 EGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            9999999988765544433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=4e-28  Score=182.84  Aligned_cols=159  Identities=34%  Similarity=0.557  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      .||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999998877777775444 346677888889999999999999988888999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      |++++++|+.+. .|+..+..... +.|+++|+||+|+.+.            ..+.....+.++...+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 58777766543 5899999999998642            22445667777777764 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|+.++|+++++.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=186.72  Aligned_cols=164  Identities=40%  Similarity=0.594  Sum_probs=152.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+++|.+|+|||+|..+|.+..|...+.|+.. +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999986 7777888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      ||+++++.||+.+..++..+.+.. ...+|+++||||+|+.+.+.++.+++..++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999998885544 4558999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            988776

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=6.8e-28  Score=182.51  Aligned_cols=163  Identities=39%  Similarity=0.561  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      .||+|+|.+|+|||||+++|.+..+...+.++..... ...+..++..+.+.+||+||++.+..++..++..+|+++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888766666664433 456677777788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999998887776653 456899999999999766666666777788888899999999999999999999998


Q ss_pred             HHHHh
Q 027503          172 QIHQT  176 (222)
Q Consensus       172 ~i~~~  176 (222)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87644

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=3.4e-28  Score=187.04  Aligned_cols=161  Identities=29%  Similarity=0.425  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|++|||||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666653 4555677888888899999999999999899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccccCCCHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTH-SREVNEEEGKILAE-TEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ++++.+++.+..|+..+..... .++|++||+||+|+.. ...+..+....... ..+++++++||++|.|+.++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877653 5699999999999865 34454444444433 4567899999999999999999999


Q ss_pred             HHHHH
Q 027503          171 NQIHQ  175 (222)
Q Consensus       171 ~~i~~  175 (222)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            87763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=4.8e-29  Score=188.21  Aligned_cols=166  Identities=22%  Similarity=0.356  Sum_probs=126.4

Q ss_pred             CCCCCCCC-CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503            1 MGDSYDEE-CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS   79 (222)
Q Consensus         1 ~~~~~~~~-~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   79 (222)
                      ||...... .+..+||+++|++|||||||+++|..+.+. .+.||.+.+..  .+...  .+.+.+||+||++.+..++.
T Consensus         1 ~~~~~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~   75 (175)
T smart00177        1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWR   75 (175)
T ss_pred             CchhhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHH
Confidence            56654432 245799999999999999999999877764 45677766554  23333  37899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEE
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFME  153 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~  153 (222)
                      .+++++|++|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+..  +.++.....     ....+.+++
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~  153 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQP  153 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEE
Confidence            9999999999999999999999988887766432 22458999999999986432  223322221     122346788


Q ss_pred             EccccCCCHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      +||++|.|+.++|++|.+.+
T Consensus       154 ~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      154 TCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=2.7e-28  Score=182.95  Aligned_cols=154  Identities=20%  Similarity=0.359  Sum_probs=122.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+++|++|||||||+++|....+. .+.|+.+.+..  .+..  ..+.+.+|||||++.+..++..++.++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999887764 35677766554  2333  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~  164 (222)
                      |||++++.++..+..|+..+.. ....++|++||+||+|+.+  .+..+++..+...     ..++++++||++|.|+.+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999988777766543 2234589999999999864  2345555555422     235789999999999999


Q ss_pred             HHHHHHH
Q 027503          165 AFLQMIN  171 (222)
Q Consensus       165 ~~~~l~~  171 (222)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=6.5e-29  Score=185.56  Aligned_cols=153  Identities=22%  Similarity=0.317  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      .|+++|++|||||||+++|.+..+...+.|+.+.+.    ..+++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999888777778876543    2333445789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEcccc------CCCHH
Q 027503           94 ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE----EEGKILAETEGLYFMETSAMQ------NLNVE  163 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~  163 (222)
                      .+++.++..+..|+..+.... .++|+++|+||+|+...+.+..    ..+..++...+++++++||++      ++|+.
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999888887775433 4699999999999976543322    123455666778899999888      99999


Q ss_pred             HHHHHHHH
Q 027503          164 DAFLQMIN  171 (222)
Q Consensus       164 ~~~~~l~~  171 (222)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=9.4e-28  Score=182.05  Aligned_cols=159  Identities=21%  Similarity=0.333  Sum_probs=123.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+++|.++||||||+++|....+. .+.|+.+.+..  .+..+  .+.+.+||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999887775 45677766543  33443  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-----GLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  163 (222)
                      +|||+++++++..+..|+..+... ...++|++||+||+|+.+..  ..++........     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998887776665322 22458999999999986532  333333322211     2356789999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      ++|++|++.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999888764

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.8e-27  Score=178.44  Aligned_cols=157  Identities=34%  Similarity=0.599  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.+..+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999998666666654 444556677788889999999999988888888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEccccC
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR-----------EVNEEEGKILAETEGL-YFMETSAMQN  159 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  159 (222)
                      |++++.++.... .|+..+..... +.|+++|+||+|+.+..           .+..+++..++...+. +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999988764 47777766554 59999999999987644           2356777888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027503          160 LNVEDAFLQMIN  171 (222)
Q Consensus       160 ~gi~~~~~~l~~  171 (222)
                      .|+.++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-29  Score=183.92  Aligned_cols=176  Identities=34%  Similarity=0.549  Sum_probs=164.8

Q ss_pred             CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503            3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY   82 (222)
Q Consensus         3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   82 (222)
                      .|-+++++..+|++|+|..++||||++++++.+-|...+..++++++-...+.+.+..+.+.+||++|+++|..++.+|+
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            35688899999999999999999999999999999999999999999888888877778889999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      +++.+.++||+-+|..||+.+..|+..+...... +|.++|-||+|+.+...+...+++.+++..++.++-+|++...++
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            9999999999999999999999999998776655 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 027503          163 EDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       163 ~~~~~~l~~~i~~~~~~  179 (222)
                      ..+|.+|++++.+...+
T Consensus       170 ~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999877655

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2.5e-27  Score=181.96  Aligned_cols=148  Identities=21%  Similarity=0.371  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-----DKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +||+++|+.|||||||+++|.+..+...+.+|.+.++..+.+.+.     +..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888898887777776663     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc-------------------CCCCeEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC-------------------SSCMAIVLVGNKSDLTHSREVNEEE----GKILA  144 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~  144 (222)
                      +|+|||++++.+|+.+..|+..+....                   ..++|++|||||+|+.+++.+..+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999986532                   2468999999999997765555443    34667


Q ss_pred             HHcCCeEEEEccccCC
Q 027503          145 ETEGLYFMETSAMQNL  160 (222)
Q Consensus       145 ~~~~~~~~~~Sa~~~~  160 (222)
                      .+.+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899999998888544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.2e-27  Score=179.50  Aligned_cols=156  Identities=22%  Similarity=0.355  Sum_probs=125.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+.+..  .+...  .+.+.+||+||++.+..++..++..+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987643 5666655553  33333  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEccccCCCHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG------LYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++++.++..+..|+..+.... ..+.|++||+||+|+.+  .++.++...+....+      +.++++||++|.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888775432 34589999999999864  355666666554222      368899999999999999


Q ss_pred             HHHHHHHHHh
Q 027503          167 LQMINQIHQT  176 (222)
Q Consensus       167 ~~l~~~i~~~  176 (222)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998876653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=6.5e-28  Score=179.28  Aligned_cols=153  Identities=22%  Similarity=0.371  Sum_probs=118.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|.+|||||||++++..+.+. .+.|+.+.+..  .+...  .+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999887775 45677766543  23333  478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE----TEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++++.++..+..|+..+... .....|++|++||+|+.+... ..+....+..    ..++.++++||++|.|++++|+
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~  154 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD  154 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence            999999999988877665432 224589999999999864221 1222233321    2235678999999999999999


Q ss_pred             HHHH
Q 027503          168 QMIN  171 (222)
Q Consensus       168 ~l~~  171 (222)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04150         155 WLSN  158 (159)
T ss_pred             HHhc
Confidence            9864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=6.1e-27  Score=182.35  Aligned_cols=166  Identities=32%  Similarity=0.568  Sum_probs=144.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ......+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44556799999999999999999999888888888899998888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++++|||+++..++..+..|+..+..... .+|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998876654 489999999999864 333333 345677788999999999999999999


Q ss_pred             HHHHHHHHH
Q 027503          167 LQMINQIHQ  175 (222)
Q Consensus       167 ~~l~~~i~~  175 (222)
                      .++++.+..
T Consensus       161 ~~ia~~l~~  169 (215)
T PTZ00132        161 LWLARRLTN  169 (215)
T ss_pred             HHHHHHHhh
Confidence            999998764

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=6.9e-28  Score=182.96  Aligned_cols=159  Identities=20%  Similarity=0.345  Sum_probs=122.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+++|++|||||||++++..+.+.. +.||.+.+..  .+...  .+.+.+||+||++.+..++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998877754 5577765543  34443  3789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |+|++++.++..+..++..+... ...++|++||+||.|+.+.  ...++.....     ....+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999999887776665322 2245899999999998642  2223222211     12234677999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027503          165 AFLQMINQIHQT  176 (222)
Q Consensus       165 ~~~~l~~~i~~~  176 (222)
                      +|++|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999877653

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=2.8e-28  Score=182.58  Aligned_cols=167  Identities=31%  Similarity=0.535  Sum_probs=150.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ...+|++|+|+.++|||+|+-.+..+.|+..+.||+. +-+...+.++ +..+.+.+|||+|+++|..++...++.+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4678999999999999999999999999999999996 6666778884 9999999999999999999998899999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEE
Q 027503           89 LLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMET  154 (222)
Q Consensus        89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  154 (222)
                      +++|++++++||+++ .+|+.++.++... .|+++||+|.||.+.            ..+..+.+..++++.| ..|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~-vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPN-VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCC-CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 5699999998855 999999999999742            3677888899999999 579999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHhhh
Q 027503          155 SAMQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      ||++..|++++|+..+..+.....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999998886554

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2.7e-27  Score=178.24  Aligned_cols=156  Identities=21%  Similarity=0.353  Sum_probs=123.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      .+..++|+++|++|||||||+++|.+..+ ....++.+..  ...+.+++  +.+.+||+||++.+..++..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            35678999999999999999999998755 3445665533  34445553  6789999999999988999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCH
Q 027503           89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNV  162 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  162 (222)
                      ++|||++++.++.....|+..+... ...++|++||+||+|+.+..  ..++...+..     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999999888887776432 23569999999999986532  3444444432     24578999999999999


Q ss_pred             HHHHHHHHH
Q 027503          163 EDAFLQMIN  171 (222)
Q Consensus       163 ~~~~~~l~~  171 (222)
                      +++|+++++
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=5.6e-27  Score=175.36  Aligned_cols=160  Identities=31%  Similarity=0.386  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+++|++|||||||+++|.++.+...+ ++.... ......+.+..+.+.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998886553 322222 2344455667789999999999888777788889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHc-C-CeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAETE-G-LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+.....  .+....++... + .+++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 58777776554 69999999999997644321  22233333333 2 3799999999999999999


Q ss_pred             HHHHHHHH
Q 027503          168 QMINQIHQ  175 (222)
Q Consensus       168 ~l~~~i~~  175 (222)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            98887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=5.6e-26  Score=171.31  Aligned_cols=141  Identities=38%  Similarity=0.634  Sum_probs=127.3

Q ss_pred             CcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc
Q 027503           35 DEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC  114 (222)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~  114 (222)
                      +.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35677788999999988888999999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          115 SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       115 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ...+|++||+||+|+.+.+.+..+++..++...++.|+++||++|.|+.++|++|++.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5568999999999998767778888889998889999999999999999999999988754

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=9.3e-27  Score=173.03  Aligned_cols=152  Identities=17%  Similarity=0.285  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +|+++|++|||||||+++|.+..+ ...+.++.+....  .+..  ..+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455666664432  2233  3468899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHH
Q 027503           93 DITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |++++.++..+..|+..+....   ..++|+++|+||+|+.+..  ..++......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887765432   3469999999999986532  2222222111     1234689999999999999


Q ss_pred             HHHHHHH
Q 027503          165 AFLQMIN  171 (222)
Q Consensus       165 ~~~~l~~  171 (222)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.5e-26  Score=173.34  Aligned_cols=153  Identities=22%  Similarity=0.312  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      +|+++|++|||||||+++|.+. +...+.++.+...  ..+...+  +.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999876 5666677776543  3444544  688999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHH----HHHHHHHc--CCeEEEEccccC------C
Q 027503           94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEE----GKILAETE--GLYFMETSAMQN------L  160 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~--~~~~~~~Sa~~~------~  160 (222)
                      ++++.++..+..|+..+.... ..++|++||+||+|+.+........    ...++...  .++++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999998988876543 2468999999999997543211111    11222222  356888999998      8


Q ss_pred             CHHHHHHHHHH
Q 027503          161 NVEDAFLQMIN  171 (222)
Q Consensus       161 gi~~~~~~l~~  171 (222)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.4e-26  Score=171.90  Aligned_cols=152  Identities=24%  Similarity=0.426  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      +|+++|++|||||||+++|.+..+.. ..++.+.+.  ..+... ..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988754 356665443  333333 34689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEEccccCCCHHHHH
Q 027503           94 ITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL------AETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..++....      ....+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999988888877776443 22469999999999986422  22222211      12234579999999999999999


Q ss_pred             HHHHH
Q 027503          167 LQMIN  171 (222)
Q Consensus       167 ~~l~~  171 (222)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=2.5e-26  Score=173.19  Aligned_cols=154  Identities=23%  Similarity=0.352  Sum_probs=120.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..++|+++|++|+|||||+++|..+.+.. ..++.+.+..  .+..+  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999887764 4566655543  34444  3689999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHH----HHcCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEE-GKILA----ETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |+|+++++++.....|+..+... ...++|+++++||+|+.+.  .+.++ ...+.    ...+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999888877766665433 2345899999999998652  23333 23222    23456799999999999999


Q ss_pred             HHHHHHH
Q 027503          165 AFLQMIN  171 (222)
Q Consensus       165 ~~~~l~~  171 (222)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=1.8e-26  Score=171.22  Aligned_cols=152  Identities=23%  Similarity=0.370  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|++++|||||+++|....+.. ..++.+.+..  .+...  ...+.+|||||++.+..++..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998777643 3455554443  33333  4689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH----HHcCCeEEEEccccCCCHHHHHHH
Q 027503           94 ITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA----ETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++++.++.....|+..+ ......++|+++|+||+|+.+... ..+....+.    ...+.+++++||++|.|++++|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  154 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW  154 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence            99988887766655443 333334589999999999864321 112222221    112357999999999999999999


Q ss_pred             HHH
Q 027503          169 MIN  171 (222)
Q Consensus       169 l~~  171 (222)
                      |++
T Consensus       155 l~~  157 (158)
T cd04151         155 LVN  157 (158)
T ss_pred             Hhc
Confidence            875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=1.1e-25  Score=171.84  Aligned_cols=156  Identities=22%  Similarity=0.329  Sum_probs=123.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+||+||+..+..++..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            35789999999999999999999987764 445555443  34455554  67899999999998888999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET----------------EGLYFM  152 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~  152 (222)
                      +|+|+++..++.....|+..+.... ..+.|++|++||+|+.+  .+..+..+.+...                ..++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999989888877777765543 34589999999999864  4455555555432                224689


Q ss_pred             EEccccCCCHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ++||++|.|+.++|++|.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=5.6e-26  Score=168.36  Aligned_cols=151  Identities=21%  Similarity=0.365  Sum_probs=118.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|.+|||||||++++.+..+ ....++.+...  ..+.+.+  ..+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998874 34455555444  3344443  689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHHHHH
Q 027503           94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ++++.++..+..|+..+.... ..+.|+++|+||+|+....  ..++......     ...++++++||++|.|+.++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888877665532 4568999999999987533  2333333322     2346899999999999999999


Q ss_pred             HHHH
Q 027503          168 QMIN  171 (222)
Q Consensus       168 ~l~~  171 (222)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=180.29  Aligned_cols=144  Identities=24%  Similarity=0.436  Sum_probs=124.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-------------eEEEEEEEeCCChh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-------------KLIKAQIWDTAGQE   72 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~   72 (222)
                      ..+....+||+|+|+.|||||||+++|.+..+...+.+|++.++....+.+++             ..+.+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            34556789999999999999999999999998888889998888777776642             46789999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC------------CCCeEEEEEeCCCCCCCC---C---
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS------------SCMAIVLVGNKSDLTHSR---E---  134 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~Dl~~~~---~---  134 (222)
                      .|..++..+++++|++|+|||+++..+|+.+..|+..+.....            ..+|++||+||+||...+   .   
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            9999999999999999999999999999999999999977631            248999999999997542   2   


Q ss_pred             CCHHHHHHHHHHcCC
Q 027503          135 VNEEEGKILAETEGL  149 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (222)
                      +..++++.|+..+++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            357899999999873

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=8.4e-26  Score=168.85  Aligned_cols=152  Identities=24%  Similarity=0.411  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +|+|+|++|||||||+++|.+...      .....++.+.+.  ..+.+++  ..+.+||+||++.+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      122234444443  3444543  688999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccccC
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-------EGLYFMETSAMQN  159 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  159 (222)
                      +++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.  ....+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888887777765432 356999999999998653  333444443322       3468999999999


Q ss_pred             CCHHHHHHHHHH
Q 027503          160 LNVEDAFLQMIN  171 (222)
Q Consensus       160 ~gi~~~~~~l~~  171 (222)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=9e-25  Score=164.78  Aligned_cols=158  Identities=29%  Similarity=0.425  Sum_probs=125.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +...++|+++|.+|||||||+++|....+.. ..||.+.+.  ..+.+.+  ..+.+||.+|+..++.+|..++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            4788999999999999999999998766433 455555444  4455555  6789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEEccccCCC
Q 027503           89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE------TEGLYFMETSAMQNLN  161 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  161 (222)
                      |+|+|.++.+.+.+....+..+... ...++|++|++||.|+.+  ..+.++......      ...+.++.|||.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999998888887776665443 235699999999999864  334455443332      2345699999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQI  173 (222)
Q Consensus       162 i~~~~~~l~~~i  173 (222)
                      +.+.|+||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=9.8e-25  Score=165.95  Aligned_cols=156  Identities=20%  Similarity=0.305  Sum_probs=120.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+++|.+|||||||+++|.+..+.. ..++.+...  ..+..++  +.+.+||+||++.+..++..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456999999999999999999999877643 344444332  3344444  67899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 027503           90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET------------EGLYFMETSA  156 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  156 (222)
                      +|+|++++.++.....++..+... ...++|+++|+||+|+..  .++.++.......            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999988887777665432 224589999999999854  3444444433211            2345999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQ  172 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~  172 (222)
                      ++|.|++++++||..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=1.4e-24  Score=155.19  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=130.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      +.+++.++|+++|..||||||++++|.+... ....|+.+.++.  .+.+.+  +.+.+||.+|+...+..|..|+...|
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ik--tl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIK--TLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeE--EEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence            3467899999999999999999999998773 334466655554  333333  78999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEEccccC
Q 027503           87 GALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEE------GKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      ++|+|+|.+++..+++....++.+ ....-.+.|++|++||.|+..  .++.+.      ...++....++++.||+.+|
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg  163 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTG  163 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence            999999999998888876655554 333345689999999999873  222222      23444667789999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 027503          160 LNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~~  177 (222)
                      +++.+.++|+++.+.++.
T Consensus       164 e~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             ccHHHHHHHHHHHHHHHh
Confidence            999999999999998743

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=7.5e-25  Score=163.85  Aligned_cols=156  Identities=18%  Similarity=0.231  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHhhhc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR---------AITSSYYR   83 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~   83 (222)
                      .+|+++|++|+|||||+++|.+..+.....+..+.+.....+...  .+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987653333333333333333333  3689999999974210         11111123


Q ss_pred             CCcEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           84 GALGALLVYDITRRATF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      .+|++++|+|+++..++  +....|+..+.... .+.|+++|+||+|+.+...+..  ...+....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            46899999999987643  55566777776543 3589999999999975433322  4455555678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQI  173 (222)
Q Consensus       162 i~~~~~~l~~~i  173 (222)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=1.2e-24  Score=160.40  Aligned_cols=151  Identities=25%  Similarity=0.427  Sum_probs=119.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   94 (222)
                      |+++|++|||||||+++|.+..+...+.++.+.+..  .+..++  +.+.+||+||++.+..++..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            799999999999999999999988888887776654  334443  6899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHHHHHH
Q 027503           95 TRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        95 ~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++..++.....|+..+... ...++|+++|+||+|+.+...  ........     ....++++++|+++|.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9998888877777665432 234589999999999865332  12211111     123467999999999999999999


Q ss_pred             HHH
Q 027503          169 MIN  171 (222)
Q Consensus       169 l~~  171 (222)
                      +.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=8.7e-25  Score=168.82  Aligned_cols=157  Identities=20%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhH
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITS   79 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~   79 (222)
                      +++.++|+|+|++|||||||++++.+..+.....+..+.+.....+.+++. ..+.+|||||...         +... .
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence            456789999999999999999999998754444344444444455555443 2789999999732         2221 1


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      ..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.......     .+....+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence            236789999999999999888887777777766655568999999999986533211     344456678999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQ  172 (222)
Q Consensus       160 ~gi~~~~~~l~~~  172 (222)
                      .|+.+++++|.+.
T Consensus       191 ~gi~~l~~~L~~~  203 (204)
T cd01878         191 EGLDELLEAIEEL  203 (204)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.1e-24  Score=163.21  Aligned_cols=157  Identities=20%  Similarity=0.186  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhh---hcCCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSY---YRGAL   86 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~---~~~~d   86 (222)
                      +|+|+|.+|||||||+++|.+........+..+.+.....+.+.+. ..+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976543222232333333333444432 478999999963    222233333   44699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCH
Q 027503           87 GALLVYDITRR-ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNV  162 (222)
Q Consensus        87 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  162 (222)
                      ++++|+|++++ .+++.+..|.+.+.....  .++|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 788888889888876642  35899999999999764443 3344445555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          163 EDAFLQMINQ  172 (222)
Q Consensus       163 ~~~~~~l~~~  172 (222)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=5.1e-24  Score=156.59  Aligned_cols=157  Identities=33%  Similarity=0.465  Sum_probs=129.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777888887777778887778899999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           92 YDITRR-ATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        92 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999877 6666554 66666666554368999999999997643 34444555555566789999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=2.2e-24  Score=163.01  Aligned_cols=154  Identities=23%  Similarity=0.280  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc-------CCCCCCCC------cceeeEEEEEE--E---CCeEEEEEEEeCCChhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE-------FRLDSKPT------IGVEFAYRNIR--V---GDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~~~~~   75 (222)
                      +|+++|++++|||||+++|++..       +...+.++      .+.+.......  +   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       11111121      22333332222  2   5567889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL---YFM  152 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  152 (222)
                      ..+..++..+|++|+|+|++++.++.....|....    ..++|+++|+||+|+.+..  ..+....++...++   +++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999877666665554322    2358999999999986422  22333455666665   489


Q ss_pred             EEccccCCCHHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ++||++|.|++++|+++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=6.8e-24  Score=174.25  Aligned_cols=163  Identities=20%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRG   84 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   84 (222)
                      ...|+|+|.|+||||||+++|.+........+..+.......+.+.+ ...|.+||+||..+       ....+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            35689999999999999999998654333344455555555555532 23689999999642       22233345668


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ++++|+|+|+++.++++.+..|...+..+..  .++|++||+||+|+.+......+....+....+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988888898899998877653  45899999999999764444334445555566789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      ++++++|.+.+.+
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=6.6e-23  Score=159.86  Aligned_cols=173  Identities=40%  Similarity=0.551  Sum_probs=140.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+++|+.|||||||+++|.++.+...+.++.+..+........+..+.+.+|||+|+++++.++..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34999999999999999999999999999888888777776666666657899999999999999999999999999999


Q ss_pred             EEeCCCh-hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEE
Q 027503           91 VYDITRR-ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETE---GLYFMET  154 (222)
Q Consensus        91 v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~  154 (222)
                      ++|..+. .+++....|...+........|+++|+||+|+....            ....+.........   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999994 455566779989888876669999999999998653            22223333333222   2348999


Q ss_pred             ccc--cCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503          155 SAM--QNLNVEDAFLQMINQIHQTTIQKSLC  183 (222)
Q Consensus       155 Sa~--~~~gi~~~~~~l~~~i~~~~~~~~~~  183 (222)
                      |++  ++.++.++|..+...+.+........
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  194 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKLVLK  194 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhhhhh
Confidence            999  99999999999999998665554443

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=2.5e-23  Score=156.38  Aligned_cols=153  Identities=21%  Similarity=0.340  Sum_probs=116.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....++|+|+|++|||||||++++.+..+. ...++.+.+.  ..+...+  ..+.+||+||...+...+..+++.+|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345899999999999999999999987654 3345555433  3444554  5789999999998888889999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccccC
Q 027503           89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--------LYFMETSAMQN  159 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~  159 (222)
                      ++|+|+.+..++.....|+..+... ...++|+++++||+|+.+...  .+.   +....+        .+++++||++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCCC
Confidence            9999999988888877666555332 334599999999999865322  122   222222        24789999999


Q ss_pred             CCHHHHHHHHHH
Q 027503          160 LNVEDAFLQMIN  171 (222)
Q Consensus       160 ~gi~~~~~~l~~  171 (222)
                      .|++++|+||++
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=1.4e-23  Score=156.04  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      .|+++|++|||||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999998643   3333334455555555555542 3578999999999887777778899999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHH---cCCeEEEEccccCCCH
Q 027503           91 VYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAET---EGLYFMETSAMQNLNV  162 (222)
Q Consensus        91 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi  162 (222)
                      |+|+++   +++.+.+    ..+... . ..|+++|+||+|+.+....  ...+.......   .+.+++++|+++|.|+
T Consensus        81 V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence            999987   3333322    222222 1 1489999999999753211  11222333333   4578999999999999


Q ss_pred             HHHHHHHHH
Q 027503          163 EDAFLQMIN  171 (222)
Q Consensus       163 ~~~~~~l~~  171 (222)
                      +++|+.+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=166.52  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=108.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG-----------QER   73 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~   73 (222)
                      +.+.+...++|+++|.+|||||||+++|.+..+.....++.  +.....+...    .+.+|||||           .+.
T Consensus         2 ~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~   75 (201)
T PRK04213          2 FETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEK   75 (201)
T ss_pred             CcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHH
Confidence            45566778999999999999999999999887655444544  3333333333    589999999           456


Q ss_pred             hhhhhHhhhc----CCcEEEEEEeCCChhhHHHHHHHH---------HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           74 FRAITSSYYR----GALGALLVYDITRRATFENTKKWL---------RELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        74 ~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~---------~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      ++..+..++.    .++++++|+|.++.....  ..|.         ..+......++|+++|+||+|+.+..   .+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~  150 (201)
T PRK04213         76 IKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVL  150 (201)
T ss_pred             HHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHH
Confidence            6666666654    457888888876532110  1110         01111122358999999999986533   3345


Q ss_pred             HHHHHHcCC---------eEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          141 KILAETEGL---------YFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       141 ~~~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ..++...++         +++++||++| |++++|++|.+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            555555554         5899999999 999999999987654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.8e-24  Score=155.68  Aligned_cols=159  Identities=21%  Similarity=0.341  Sum_probs=130.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ....+|+++|-.++||||++.+|..+++... .||++.+.+...+.    .+.|++||.+|++.++.+|..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4688999999999999999999999887555 79998888765554    479999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  163 (222)
                      ||+|.+|++.+..+...+..+..... ...|+++++||.|+.+.  .+..+.......     +...+..++|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999888776666554443 56899999999998753  333333333222     34578899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      +.++|+.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=9.4e-24  Score=153.79  Aligned_cols=134  Identities=23%  Similarity=0.228  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhHhhhcCCcEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-----RFRAITSSYYRGALGA   88 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~   88 (222)
                      ||+++|++|||||||+++|.+..+.  +.++.+.       .+..     .+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  2233222       2221     589999973     2333333 57899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~  167 (222)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....+....++...+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988765 3343322      149999999999865 34455666777777776 799999999999999998


Q ss_pred             HHH
Q 027503          168 QMI  170 (222)
Q Consensus       168 ~l~  170 (222)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=9.7e-23  Score=148.35  Aligned_cols=153  Identities=48%  Similarity=0.747  Sum_probs=123.0

Q ss_pred             EEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC
Q 027503           17 MIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        17 llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998886 44444555 6777777777777789999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           96 RRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSREVNEEE-GKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        96 ~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ++.++..+..|. ..+......+.|+++|+||+|+.......... ...+......+++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888887773 33334445669999999999987644333322 4455566678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.1e-23  Score=153.32  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999888766554445444444444443 13467899999999998888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH-HHHHHHHH------HcCCeEEEEccccCCCHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE-EEGKILAE------TEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |+++...... ...+..+..   .++|+++|+||+|+........ +....+..      ...++++++|+++|.|+.++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9988532221 112222222   3489999999999864321000 11111111      12367999999999999999


Q ss_pred             HHHHHHHHH
Q 027503          166 FLQMINQIH  174 (222)
Q Consensus       166 ~~~l~~~i~  174 (222)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.2e-23  Score=153.92  Aligned_cols=148  Identities=20%  Similarity=0.244  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------hhhhhHhhh--cC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------FRAITSSYY--RG   84 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~--~~   84 (222)
                      ++|+++|.||||||||+|+|.+........|..+++.....+.+.+  ..+.++|+||...      .+.+...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999987777788888888888888877  5789999999432      223444554  58


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      .|++++|+|+++.+.-.   ....++.+   .++|+++++||+|........ .+...++...+++++.+||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998754222   22333333   349999999999987644433 346778888999999999999999999


Q ss_pred             HHHHH
Q 027503          165 AFLQM  169 (222)
Q Consensus       165 ~~~~l  169 (222)
                      +++.+
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=8.8e-23  Score=150.88  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=112.3

Q ss_pred             EEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhhc--CCcEE
Q 027503           17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYYR--GALGA   88 (222)
Q Consensus        17 llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~   88 (222)
                      |+|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||.+.+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998865555556666666666677765  4789999999876543      3555664  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|+|++++....   .|...+..   .++|+++|+||+|+.+...+.. ....++...+++++++|+.+|.|+.+++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999864432   34333333   3489999999999976544433 345677777899999999999999999999


Q ss_pred             HHHHH
Q 027503          169 MINQI  173 (222)
Q Consensus       169 l~~~i  173 (222)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=1.3e-22  Score=167.90  Aligned_cols=155  Identities=21%  Similarity=0.136  Sum_probs=116.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh---------hhhhhhHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------RFRAITSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~   80 (222)
                      +..++|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+.+. ..+.+|||+|..         .+.. ...
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHH
Confidence            34589999999999999999999998765555556666777777777432 478999999972         2322 223


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503           81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                      .+..+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.....     .... .....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence            578999999999999998888777777767666555689999999999864221     1111 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQ  172 (222)
Q Consensus       161 gi~~~~~~l~~~  172 (222)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=3.3e-22  Score=164.19  Aligned_cols=160  Identities=20%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hhh---hHhhhcC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----RAI---TSSYYRG   84 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~   84 (222)
                      ...|+|+|.++||||||+++|..........+..+.......+.+++ ...+.+||+||..+.    ..+   +...+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            35699999999999999999998654333334444454555555544 247899999996421    123   3334557


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           85 ALGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        85 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      ++++++|+|+++.   .+++.+..|...+..+..  ...|++||+||+|+.+... ..+..+.++...+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999986   677888888887766542  4589999999999976432 234455666667789999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQI  173 (222)
Q Consensus       160 ~gi~~~~~~l~~~i  173 (222)
                      .|++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=1.4e-22  Score=155.30  Aligned_cols=149  Identities=21%  Similarity=0.193  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR--DEFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAIT   78 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   78 (222)
                      -+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+.+....+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  4443322            1223344444444444455789999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAE-------TEGLY  150 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  150 (222)
                      ..+++.+|++++|+|+++.. +.....|+..+..   .++|+++|+||+|+.+... ...++...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333334333332   3589999999999965321 11223333332       23678


Q ss_pred             EEEEccccCCCHHHH
Q 027503          151 FMETSAMQNLNVEDA  165 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~  165 (222)
                      ++++||++|.|+.++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=1.4e-22  Score=152.50  Aligned_cols=155  Identities=24%  Similarity=0.253  Sum_probs=109.0

Q ss_pred             EEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhh---hHhhhcCCcEEE
Q 027503           17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAI---TSSYYRGALGAL   89 (222)
Q Consensus        17 llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~~d~~i   89 (222)
                      |+|++|||||||+++|.+..+.....+..+.+.....+.+.+ ...+.+|||||...    ...+   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865222223333344334444541 25789999999642    1222   234577899999


Q ss_pred             EEEeCCCh------hhHHHHHHHHHHHHHHcC-------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503           90 LVYDITRR------ATFENTKKWLRELREFCS-------SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus        90 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      +|+|++++      .++.....|...+.....       .+.|+++|+||+|+..................+.+++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      577777777777654432       35899999999999764443332223444445678999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQ  172 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~  172 (222)
                      +++.|+.++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=1e-21  Score=144.73  Aligned_cols=146  Identities=24%  Similarity=0.261  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhhc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYYR   83 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   83 (222)
                      ++|+++|++|+|||||++++.+..... ...+..+.+.....+..++  ..+.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 2234444444445555554  5689999999654322        2335677


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .....+.+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998877766554433      334899999999999764432       344456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          164 DAFLQMINQI  173 (222)
Q Consensus       164 ~~~~~l~~~i  173 (222)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=6.3e-22  Score=159.12  Aligned_cols=152  Identities=20%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYRG   84 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~   84 (222)
                      +|+|+|.+|||||||+|+|.+..+...+ .+..+.+........++  ..+.+|||||.....        .....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999998765333 23333332222222333  468999999965321        123456789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE  163 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  163 (222)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+... .......+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876654  334444433   3489999999999864222 12233344444444 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          164 DAFLQMINQI  173 (222)
Q Consensus       164 ~~~~~l~~~i  173 (222)
                      ++++++.+.+
T Consensus       154 ~L~~~l~~~l  163 (270)
T TIGR00436       154 FLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHhC
Confidence            9999987765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=2.2e-21  Score=137.27  Aligned_cols=169  Identities=22%  Similarity=0.340  Sum_probs=137.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--CCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhHhhhcC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--SKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERF-RAITSSYYRG   84 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~   84 (222)
                      ..+..||+++|..++|||+++.+|+-......  ..+|+. +++...+.. .+-.-.+.|+||.|.... ..+-.+|+.-
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~   84 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF   84 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence            34678999999999999999999886654433  345553 334333333 333447899999996655 6788899999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|++++||+..+++||+.+.-+...|.... +..+|++|++||+|+.+.+.+..+.+..|+....+..+++++.+...+-
T Consensus        85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence            999999999999999998877666676655 3569999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 027503          164 DAFLQMINQIHQTTI  178 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~  178 (222)
                      +.|.++..++...+.
T Consensus       165 epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  165 EPFTYLASRLHQPQS  179 (198)
T ss_pred             hHHHHHHHhccCCcc
Confidence            999999998875543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=6.9e-22  Score=170.25  Aligned_cols=159  Identities=23%  Similarity=0.241  Sum_probs=114.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERFRAIT   78 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   78 (222)
                      +..++|+|+|.+|||||||+|+|++..+. ....++.+.+.....+..++.  .+.+|||||.          +.+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            35689999999999999999999988753 344566666666666777764  4679999995          2233332


Q ss_pred             -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC---CHHHHHHHHHHcCCeEEEE
Q 027503           79 -SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV---NEEEGKILAETEGLYFMET  154 (222)
Q Consensus        79 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  154 (222)
                       ..+++.+|++++|+|++++.++.++. ++..+..   .++|++||+||+|+.+....   ..+....+.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             34678999999999999988877754 4444433   45899999999999752211   0111112222234789999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ||++|.|++++|+.+.+.+.
T Consensus       363 SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999987654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=2e-21  Score=165.22  Aligned_cols=153  Identities=21%  Similarity=0.222  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSY   81 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~   81 (222)
                      ..++|+++|++|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||...+..        ....+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987542 33446666777777777877  4568999999754332        23467


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      ++.+|++++|+|++++.+++..  |+..+..   .++|+++|+||+|+.+.      ....++...+.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            8899999999999998877664  6555432   34899999999998643      12344566778899999998 69


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027503          162 VEDAFLQMINQIHQTT  177 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~  177 (222)
                      +.++|+.+.+.+.+..
T Consensus       348 I~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       348 IKALVDLLTQKINAFY  363 (442)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=1.2e-21  Score=138.41  Aligned_cols=114  Identities=33%  Similarity=0.531  Sum_probs=89.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC--CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFR--LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      ||+|+|++|||||||+++|.+..+.  ....+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22334444555555667777777799999999998888888889999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHHHHcCCCCeEEEEEeCCC
Q 027503           92 YDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      ||++++.+++.+..+   +..+...... +|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~-~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKN-IPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSC-SEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCC-CCEEEEEeccC
Confidence            999999999987554   4545444344 99999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=3.3e-21  Score=163.05  Aligned_cols=158  Identities=22%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--hhh------hHhhhc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--RAI------TSSYYR   83 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~~~~~~   83 (222)
                      .++|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+.. .+.+|||+|....  ..+      +...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            3689999999999999999999887665555666677666667765532 6789999997431  122      223468


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNV  162 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  162 (222)
                      .+|++++|+|++++.+++.+..|...+......++|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            999999999999998888876666666655555689999999999864211   1111  1123445 588999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++++++.+.+..
T Consensus       351 deL~e~I~~~l~~  363 (426)
T PRK11058        351 PLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=2.4e-21  Score=147.23  Aligned_cols=154  Identities=21%  Similarity=0.224  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCC----------------cceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPT----------------IGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI   77 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   77 (222)
                      +|+|+|.+|+|||||+++|.+..........                .+.......+...  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999988765443221                1222222333333  367899999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH---------
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAET---------  146 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~---------  146 (222)
                      +..++..+|++++|+|+.++..... ..++..+..   .+.|+++|+||+|+.......  .+........         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8999999999999999988754433 233333333   458999999999997532211  1222222222         


Q ss_pred             -----cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          147 -----EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       147 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                           ...+++++||++|.|+.++++++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 357899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=2.4e-21  Score=165.46  Aligned_cols=148  Identities=22%  Similarity=0.214  Sum_probs=113.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY   82 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   82 (222)
                      .++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999987652 34456666666667777776  46799999997643321        33468


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++++|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+.+++++||++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            89999999999999887776544432      3348999999999996533221        334568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++++++.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887753

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=7.5e-21  Score=157.12  Aligned_cols=155  Identities=19%  Similarity=0.256  Sum_probs=107.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhh-------hHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAI-------TSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~-------~~~   80 (222)
                      .+.++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+..++  ..+.+|||||... +..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            45679999999999999999999988765322 22233344445556655  4679999999743 2221       123


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccc
Q 027503           81 YYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAM  157 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  157 (222)
                      .+..+|++++|+|..+.  +.... .|+..+...   +.|+++|+||+|+.+.   .......+....+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            47799999999997653  33433 355545433   3677889999998642   2334445544443  579999999


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 027503          158 QNLNVEDAFLQMINQIH  174 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~  174 (222)
                      +|.|++++|++|.+.+.
T Consensus       200 tg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        200 SGKNIDGLLEYITSKAK  216 (339)
T ss_pred             CccCHHHHHHHHHHhCC
Confidence            99999999999988643

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.3e-21  Score=165.30  Aligned_cols=156  Identities=22%  Similarity=0.223  Sum_probs=111.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   80 (222)
                      ...++|+|+|.+|||||||+|+|.+.... ....++.+.+.....+..++  ..+.+|||||.+.        +...+..
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            44579999999999999999999987643 23345555555555666666  4588999999752        3344566


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503           81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                      +++.+|++|+|+|++++.++.. ..|...+..   .++|+++|+||+|+....   .+....+....+ ..+++||++|.
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~  185 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGR  185 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCC
Confidence            7899999999999998766543 334444443   348999999999986421   122222222233 34699999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQIHQ  175 (222)
Q Consensus       161 gi~~~~~~l~~~i~~  175 (222)
                      |+.++|+++++.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988754

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=2.8e-21  Score=142.54  Aligned_cols=146  Identities=21%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhhcCCc
Q 027503           16 VMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYYRGAL   86 (222)
Q Consensus        16 ~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   86 (222)
                      +++|.+|+|||||+++|.+.... ....+..+.+........++  ..+.+|||||...+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999986522 12233334444445555554  5789999999876433        3445678999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDA  165 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  165 (222)
                      ++++|+|..++.+.... .+...+...   +.|+++|+||+|+.+....     .......+. +++++|+++|.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876544332 122333332   3899999999998753221     222334555 7899999999999999


Q ss_pred             HHHHHHH
Q 027503          166 FLQMINQ  172 (222)
Q Consensus       166 ~~~l~~~  172 (222)
                      |+++++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=3.2e-21  Score=147.60  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC----cCC---CCCCCCcceeeEEEEEEEC------------CeEEEEEEEeCCChhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD----EFR---LDSKPTIGVEFAYRNIRVG------------DKLIKAQIWDTAGQER   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~   73 (222)
                      ++|+++|++++|||||+++|...    .+.   ....+..+.+.....+.+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111   1112223333333333332            2356889999999876


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHH-----
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKI-LAE-----  145 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~-~~~-----  145 (222)
                      +..........+|++++|+|+.+.........+. .. ..  .+.|+++|+||+|+.......  .+.... +..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444445567789999999998854433322222 11 11  247999999999986432211  111211 111     


Q ss_pred             -HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          146 -TEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       146 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                       ..+++++++||++|.|+.++++++.+.+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             23578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.7e-20  Score=157.98  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hhhcCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITS---SYYRGA   85 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~   85 (222)
                      ..|+|+|.|+||||||+++|.+........|..+.......+.+++ ...|.+||+||...    ...+..   ..+.++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3799999999999999999998664333334444444444444441 24789999999642    112333   345579


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503           86 LGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        86 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                      +++|+|+|+++.   .++++...|...+..+..  ..+|++||+||+|+.+    ..+....+....+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   567777778888876643  4689999999999843    1344556666666889999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 027503          161 NVEDAFLQMINQIHQT  176 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~  176 (222)
                      |++++++++.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998877654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.87  E-value=3.9e-21  Score=142.56  Aligned_cols=140  Identities=15%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhhhcCCcEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITSSYYRGALGAL   89 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i   89 (222)
                      +|+++|.+|+|||||+|+|.+... . ...+       ..+.+...    .+|||||...    +.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999876431 1 1111       12222222    2699999632    2222223478999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEccccCCCHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL--YFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|++++.++..  .|+..+    ..+.|+++++||+|+.+   ...+....++...++  +++++||++|.|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998876532  343332    12478999999999854   234556677777774  899999999999999999


Q ss_pred             HHHHHHHH
Q 027503          168 QMINQIHQ  175 (222)
Q Consensus       168 ~l~~~i~~  175 (222)
                      ++.+.+.+
T Consensus       141 ~l~~~~~~  148 (158)
T PRK15467        141 YLASLTKQ  148 (158)
T ss_pred             HHHHhchh
Confidence            98877654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.87  E-value=3.9e-22  Score=140.15  Aligned_cols=157  Identities=22%  Similarity=0.378  Sum_probs=124.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+.+.++|-.+||||||+|....+.+.+.-.|+.|.+..    .+....+.+.+||.||+..|+++|..|++.++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            568999999999999999999888888888888877655    4444557889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccccCCCHHHH
Q 027503           92 YDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL-----AETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      +|+.+++.+...+..+..+... .-.++|++|+|||.|+.+.  ........-     ...+.+..+.+|+++..+++-+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            9999998888777666555443 3477999999999998652  222221111     1223356899999999999999


Q ss_pred             HHHHHHHHH
Q 027503          166 FLQMINQIH  174 (222)
Q Consensus       166 ~~~l~~~i~  174 (222)
                      .+||++.-.
T Consensus       174 ~~Wli~hsk  182 (186)
T KOG0075|consen  174 LDWLIEHSK  182 (186)
T ss_pred             HHHHHHHhh
Confidence            999988643

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=1.3e-20  Score=165.56  Aligned_cols=156  Identities=22%  Similarity=0.262  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE-------FRLDSKP------TIGVEFAYRNIRV-----GDKLIKAQIWDTAGQER   73 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~   73 (222)
                      .-+|+|+|+.++|||||+++|+...       +...+..      ..+.++....+.+     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4579999999999999999998642       2222211      1244444333322     45568899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL---Y  150 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  150 (222)
                      |...+..++..+|++|+|+|++++.+......|...+.    .++|+++|+||+|+.+..  ..+...++....++   +
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999999776666655544332    348999999999986422  22333455555565   4


Q ss_pred             EEEEccccCCCHHHHHHHHHHHH
Q 027503          151 FMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ++++||++|.|+.++|+++++.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=1.5e-20  Score=144.06  Aligned_cols=163  Identities=16%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERF   74 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~   74 (222)
                      .....+..++|+++|++|+|||||+++|.+..+.....++.+.+........+   ..+.+|||||.          +.+
T Consensus        17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~   93 (196)
T PRK00454         17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKW   93 (196)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHH
Confidence            34455678999999999999999999999876444444444444333322322   57899999994          344


Q ss_pred             hhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHcCC
Q 027503           75 RAITSSYYRGA---LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAETEGL  149 (222)
Q Consensus        75 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  149 (222)
                      ..+...++..+   +++++++|.+++.+.... .+...+.   ..+.|+++++||+|+.+.....  .+...........
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~  169 (196)
T PRK00454         94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD  169 (196)
T ss_pred             HHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            44555555544   678888998876443321 1122222   2348999999999986533221  1223333333367


Q ss_pred             eEEEEccccCCCHHHHHHHHHHHHH
Q 027503          150 YFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       150 ~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +++++|+++|.|++++++.|.+.+.
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999998877654

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1.2e-20  Score=160.75  Aligned_cols=163  Identities=17%  Similarity=0.164  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hh---hhhHhhhcC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FR---AITSSYYRG   84 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~---~~~~~~~~~   84 (222)
                      ...|+|+|.||||||||+++|.+........+..+.......+.+.+  ..|.+||+||...    ..   .....++..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46799999999999999999998654433445555555555666665  5789999999532    11   122335678


Q ss_pred             CcEEEEEEeCCCh----hhHHHHHHHHHHHHHHc-----------CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027503           85 ALGALLVYDITRR----ATFENTKKWLRELREFC-----------SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL  149 (222)
Q Consensus        85 ~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (222)
                      +|++|+|+|+++.    ..+.++..|...+..+.           ....|++||+||+|+.+..... +.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCC
Confidence            9999999999753    34455555555554443           1358999999999997543321 222333344578


Q ss_pred             eEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          150 YFMETSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       150 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +++++||+++.|+++++.+|.+.+...+
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999887654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=1.4e-20  Score=164.64  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=113.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++.. .+.||||||++.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            467899999999999999999999888766555555555555555554432 7899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccccCC
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-------G--LYFMETSAMQNL  160 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~  160 (222)
                      +|+|++++..-+... .   +......++|+++++||+|+.+.   ..+.........       +  .+++++||++|.
T Consensus       164 LVVda~dgv~~qT~e-~---i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIE-A---ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHH-H---HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            999998743212211 1   22222345899999999998642   222333332222       2  579999999999


Q ss_pred             CHHHHHHHHHH
Q 027503          161 NVEDAFLQMIN  171 (222)
Q Consensus       161 gi~~~~~~l~~  171 (222)
                      |++++|+++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=2.3e-20  Score=159.45  Aligned_cols=160  Identities=24%  Similarity=0.175  Sum_probs=110.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------h-
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------I-   77 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~-   77 (222)
                      +..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++  ..+.+|||||......          . 
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            45689999999999999999999987643 22334444454445555555  3689999999643221          1 


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEE
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET----EGLYFME  153 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~  153 (222)
                      ...+++.+|++++|+|++++.+..+.. ++..+..   .++|+++|+||+|+.+......+........    .++++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence            134688999999999999987766643 3333332   3589999999999972111111111222222    2478999


Q ss_pred             EccccCCCHHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      +||++|.|+.++|+++.+.+..
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999886653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=7.6e-21  Score=134.93  Aligned_cols=165  Identities=24%  Similarity=0.485  Sum_probs=144.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      -.+||.++|++..|||||+-.+.++++.+.+..+.|++.--+.+.+.+..+.|.+||.+|++++..+.+....++-++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            57999999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-----HHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-----EEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      +||++.+.++..+..|+.+.+...+.-+| ++||+|.|.--.-...     ...++.+++..+.+.+.+|+..+.++..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            99999999999999999999988877677 5679999963211111     22356778888999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027503          166 FLQMINQIHQT  176 (222)
Q Consensus       166 ~~~l~~~i~~~  176 (222)
                      |.-+..++...
T Consensus       178 FK~vlAklFnL  188 (205)
T KOG1673|consen  178 FKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHhCC
Confidence            98888877653

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.6e-21  Score=133.35  Aligned_cols=157  Identities=22%  Similarity=0.408  Sum_probs=125.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.++|+++|-.++||||++..|.... +.+..||++.++....  +  ..+.|.+||.+|++..+.+|++|+.+..++|+
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt--y--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT--Y--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE--e--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            47899999999999999999998766 4566788877766433  3  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHH-HHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |+|..+....++++..+..+. +......|++|.+||-|+++.  ....++..+..     .....+.++++.+|.|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999999888888877665543 333456899999999999754  33445444432     3345688999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          165 AFLQMINQIH  174 (222)
Q Consensus       165 ~~~~l~~~i~  174 (222)
                      .|.|+...+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999987653

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=5.9e-20  Score=137.39  Aligned_cols=155  Identities=23%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhH
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----------R-AITS   79 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~   79 (222)
                      .++|+++|.+|+|||||+++|.+..... ...+..+.......+..++  ..+.+|||||....          . ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999876432 2223333334344455555  35789999996432          1 1123


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHc----CCeEEEE
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE-GKILAETE----GLYFMET  154 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~  154 (222)
                      ..+..+|++++|+|++++.+..... ++..+..   .+.|+++++||+|+.+......+. ........    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            4567999999999999987655432 2222222   348999999999987643222222 22222332    3689999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~  172 (222)
                      ||+++.|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999888753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=4.8e-20  Score=154.37  Aligned_cols=161  Identities=21%  Similarity=0.195  Sum_probs=116.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhhhcCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAITSSYYRGA   85 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~   85 (222)
                      ..|+|+|.||||||||+|+|.+........|..+.......+...+. ..+.++||||...-       .......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            36999999999999999999987654444555555555555665432 35899999996431       11222457899


Q ss_pred             cEEEEEEeCC---ChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcccc
Q 027503           86 LGALLVYDIT---RRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQ  158 (222)
Q Consensus        86 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  158 (222)
                      |++++|+|++   +...++....|+..+..+..  ...|++||+||+|+.....+ .+....+....+  .+++.+||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999988   44566777777777766542  34899999999998653322 233444444444  4789999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~  175 (222)
                      +.|+++++++|.+.+.+
T Consensus       318 g~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        318 GLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CcCHHHHHHHHHHHhhh
Confidence            99999999999887754

>cd04163 Era Era subfamily

Probab=99.85  E-value=5e-20  Score=136.68  Aligned_cols=156  Identities=21%  Similarity=0.138  Sum_probs=103.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYR   83 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~   83 (222)
                      ..+|+++|++|+|||||+++|.+.................. .........+.+|||||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765433322221111111 1222233578999999965322        23445688


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNV  162 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi  162 (222)
                      .+|++++|+|+.++.+. ....+...+...   +.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            99999999999987221 112233334333   4899999999998743332233344444444 368999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          163 EDAFLQMINQ  172 (222)
Q Consensus       163 ~~~~~~l~~~  172 (222)
                      .++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.85  E-value=2.3e-20  Score=144.04  Aligned_cols=159  Identities=22%  Similarity=0.213  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEEEEEC---------------------------C----
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRNIRVG---------------------------D----   58 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------------~----   58 (222)
                      ++|+++|+.|+|||||+..|.+.....   ......+...........                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997542111   111111111111111100                           1    


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--  136 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--  136 (222)
                      ....+.||||||++.+...+...+..+|++++|+|++++.........+..+....  ..|++||+||+|+.+.....  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence            11578999999999888888888889999999999997421111111222222221  14789999999996522111  


Q ss_pred             HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          137 EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       137 ~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+..+.+...   .+++++++||++|.|++++|+++.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1222333332   257899999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.85  E-value=3.6e-20  Score=140.19  Aligned_cols=149  Identities=19%  Similarity=0.223  Sum_probs=98.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAI   77 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~   77 (222)
                      +....++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++   .+.+|||||..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346788999999999999999999998764333334444433333333333   68999999942          34444


Q ss_pred             hHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--Ce
Q 027503           78 TSSYYR---GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEG--LY  150 (222)
Q Consensus        78 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~  150 (222)
                      ...+++   .+|++++|+|++++.+..+.. ++..+..   .++|+++|+||+|+.+....  ..+..+......+  ..
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            445555   358999999998865544432 2333332   35899999999998643221  1223334444443  47


Q ss_pred             EEEEccccCCCHH
Q 027503          151 FMETSAMQNLNVE  163 (222)
Q Consensus       151 ~~~~Sa~~~~gi~  163 (222)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=5.2e-20  Score=161.55  Aligned_cols=154  Identities=19%  Similarity=0.209  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC---cCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD---EFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +.|+++|++++|||||+++|.+.   .++....++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999999863   33444556677777766777766  68899999999999888888899999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHc----CCeEEEEccccC
Q 027503           90 LVYDITRR---ATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVN--EEEGKILAETE----GLYFMETSAMQN  159 (222)
Q Consensus        90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~~~~Sa~~~  159 (222)
                      +|+|++++   ++++.+.    .+..   .++| ++||+||+|+.+...+.  .++...+....    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999983   4444332    2222   2367 99999999997643221  22344444443    578999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQIHQ  175 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~  175 (222)
                      .|++++++.+...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999888766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=1.2e-19  Score=147.69  Aligned_cols=158  Identities=21%  Similarity=0.168  Sum_probs=105.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITSSYY   82 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~   82 (222)
                      +.-.|+|+|.+|||||||+|+|++..+...+....+.......+...+ ...+.+|||||....        .......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            456799999999999999999999876544322222222222222222 258899999996432        22344567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCC
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLN  161 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  161 (222)
                      ..+|++++|+|+++.... .....+..+.   ..+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            899999999999983221 1122223333   2348999999999997432222334445544444 6799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQI  173 (222)
Q Consensus       162 i~~~~~~l~~~i  173 (222)
                      ++++++++.+.+
T Consensus       159 v~~L~~~L~~~l  170 (292)
T PRK00089        159 VDELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHHhC
Confidence            999999988875

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=7.5e-20  Score=162.43  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=112.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE--EEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA--YRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .+..+|+|+|+.++|||||+++|....+.....++.+.+..  ...+..++....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            46789999999999999999999987776544444443332  2233333445789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHH------HHHcC--CeEEEEcccc
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KIL------AETEG--LYFMETSAMQ  158 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~------~~~~~--~~~~~~Sa~~  158 (222)
                      +|+|+|++++........|    ......++|++|++||+|+....   .+.. ..+      ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999885322221111    12223458999999999986522   1221 111      12233  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|++++|+++....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999887753

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=8.2e-20  Score=163.48  Aligned_cols=155  Identities=16%  Similarity=0.167  Sum_probs=113.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ..+...|+|+|+.++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            45789999999999999999999988777655445454555445555555  5789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HH------HHHHcC--CeEEEEccccC
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KI------LAETEG--LYFMETSAMQN  159 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~------~~~~~~--~~~~~~Sa~~~  159 (222)
                      |+|||++++..-....    .+......++|++|++||+|+.+..   .+.. ..      +...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            9999999853211111    1222233458999999999996522   1111 11      122233  78999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQ  172 (222)
Q Consensus       160 ~gi~~~~~~l~~~  172 (222)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998753

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=6.8e-20  Score=161.00  Aligned_cols=146  Identities=18%  Similarity=0.186  Sum_probs=111.8

Q ss_pred             cCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh------hHhhh--cCCcEEEE
Q 027503           19 GDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI------TSSYY--RGALGALL   90 (222)
Q Consensus        19 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~   90 (222)
                      |++|||||||+|+|.+..+...+.++.+.+.....+..++.  .+.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998776666777777777667777663  5799999998876543      34443  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |+|.++.+..   ..+...+.   ..++|+++|+||+|+.+..... .+.+.+++..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875321   22223332   2458999999999987644443 456788888999999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=5.7e-20  Score=140.18  Aligned_cols=159  Identities=22%  Similarity=0.273  Sum_probs=107.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ..++|+++|+.++|||||+++|+........                  ....+.+.....+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3578999999999999999999864422111                  1223344444444412334689999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHc---
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETE---  147 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~---  147 (222)
                      .|.......+..+|++|+|+|+.++..... ...+..+...   ++|++||+||+|+...+.  ...+....+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            988888888999999999999997644322 3333334433   388999999999872111  1111111232222   


Q ss_pred             ---CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          148 ---GLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       148 ---~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                         .++++++||.+|.|+.++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35799999999999999998887653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.7e-19  Score=154.34  Aligned_cols=146  Identities=23%  Similarity=0.200  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhhhc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSYYR   83 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   83 (222)
                      ++|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23345555566666677766  6789999999876        2334556788


Q ss_pred             CCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503           84 GALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNL  160 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  160 (222)
                      .+|++|+|+|+.++.+..+  +..|+.   ..   +.|+++|+||+|+.+.    .....++ ...++ .++++||.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            9999999999988644332  233332   22   4899999999997541    1222233 34455 48999999999


Q ss_pred             CHHHHHHHHHH
Q 027503          161 NVEDAFLQMIN  171 (222)
Q Consensus       161 gi~~~~~~l~~  171 (222)
                      |+.++|+.+..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999887

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=2.1e-19  Score=153.63  Aligned_cols=150  Identities=21%  Similarity=0.234  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhhhcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ--------ERFRAITSSYYRG   84 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~   84 (222)
                      +|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++  ..+.+|||||.        +.+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987643 22345555555666666666  46899999995        3344556778899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE  163 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  163 (222)
                      +|++++|+|..++.+..+ ..+...++..   ++|+++|+||+|+.+....    ... ....++ +++++||.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999988654433 2233333332   4899999999998653321    122 234565 79999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          164 DAFLQMINQIH  174 (222)
Q Consensus       164 ~~~~~l~~~i~  174 (222)
                      ++++++.+.+.
T Consensus       150 ~ll~~i~~~l~  160 (429)
T TIGR03594       150 DLLDAILELLP  160 (429)
T ss_pred             HHHHHHHHhcC
Confidence            99999887763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.83  E-value=3.9e-19  Score=137.11  Aligned_cols=117  Identities=18%  Similarity=0.296  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC-cEEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA-LGALLVY   92 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~   92 (222)
                      +|+++|++|||||+|+++|....+.....+ ...+.........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS-IEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCc-EeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            689999999999999999999877655433 22222222222223446799999999999998888999998 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHHH---cCCCCeEEEEEeCCCCCC
Q 027503           93 DITRR-ATFENTKKWLRELREF---CSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        93 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~Dl~~  131 (222)
                      |+.+. .++..+..|+..+...   ...++|++|++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6777766666554322   235699999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00880 Era_like Era (E

Probab=99.83  E-value=1.5e-19  Score=132.86  Aligned_cols=151  Identities=26%  Similarity=0.254  Sum_probs=104.4

Q ss_pred             EEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhhhcCCcEE
Q 027503           17 MIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------AITSSYYRGALGA   88 (222)
Q Consensus        17 llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~~   88 (222)
                      |+|++|||||||++++.+.... ....+..+............ ...+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987654 33333333333333333332 3578999999976543       3445688999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE---EGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      ++|+|..+........ |.....   ..+.|+++|+||+|+.........   .........+.+++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999987665544 333332   345899999999998764332221   112333345678999999999999999


Q ss_pred             HHHHHHH
Q 027503          166 FLQMINQ  172 (222)
Q Consensus       166 ~~~l~~~  172 (222)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=140.73  Aligned_cols=160  Identities=20%  Similarity=0.143  Sum_probs=112.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSY   81 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   81 (222)
                      .+.--|+++|.||+|||||+|+|.+......+....++......+...+ ...+.++||||...        ........
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4566799999999999999999999998776655554444444444433 35889999999542        22344567


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNL  160 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  160 (222)
                      +..+|++++|+|++++..-.+ ...++.+..   .+.|+++++||+|..+...........+..... ..++++||++|.
T Consensus        83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            789999999999998543222 333444544   347999999999987654421223333333333 479999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQIH  174 (222)
Q Consensus       161 gi~~~~~~l~~~i~  174 (222)
                      |++.+.+.+...+-
T Consensus       159 n~~~L~~~i~~~Lp  172 (298)
T COG1159         159 NVDTLLEIIKEYLP  172 (298)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999988877654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=3.8e-19  Score=152.23  Aligned_cols=159  Identities=25%  Similarity=0.203  Sum_probs=108.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhhh-
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRAI-   77 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-   77 (222)
                      ...++|+|+|.+|+|||||+++|++.... ....+..+.+.....+..++  ..+.+|||||...          +... 
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35799999999999999999999986632 23344444444444455555  4578999999532          1111 


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCeEEE
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE----TEGLYFME  153 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~  153 (222)
                      ...++..+|++++|+|++++.+..+.. ++..+..   .+.|+++|+||+|+.+... ..+.......    ...+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence            234678999999999999987766543 3333333   3489999999999874221 1111122222    23478999


Q ss_pred             EccccCCCHHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      +||++|.|+.++|+.+.+....
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988876543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=4.9e-19  Score=159.11  Aligned_cols=153  Identities=15%  Similarity=0.148  Sum_probs=114.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------ITSSY   81 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   81 (222)
                      .++|+++|++|||||||+|+|.+........+..+++.....+..  ....+.+||+||...+..          ....+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            578999999999999999999987765555555555554444444  346789999999876532          12233


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           82 Y--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      +  ..+|++++|+|.++.+..   ..|...+.+.   ++|+++++||+|+.+.+.+ ..+.+.+.+..+++++++|+.+|
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            3  488999999999986542   2244444433   4899999999998765544 35567788889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQI  173 (222)
Q Consensus       160 ~gi~~~~~~l~~~i  173 (222)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.8e-18  Score=126.70  Aligned_cols=162  Identities=22%  Similarity=0.324  Sum_probs=121.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------CCC--CcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--------SKP--TIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      +.....+..||+|.|+.++||||+++++........        ...  ..++...+..+.+.+. ..+++++||||++|
T Consensus         3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF   81 (187)
T COG2229           3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERF   81 (187)
T ss_pred             cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHH
Confidence            455677899999999999999999999987664211        111  1233334444445443 37899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEE
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE--GLYFM  152 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~  152 (222)
                      +.+|..+++++.++|+++|.+.+..+ .....+..+.....  +|++|+.||.|+.+.  .+.+..++.....  .++++
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCcee
Confidence            99999999999999999999999887 43444443433322  899999999999753  3455555555444  78999


Q ss_pred             EEccccCCCHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      +.+|..+++..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999998877665

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=5e-19  Score=159.19  Aligned_cols=158  Identities=19%  Similarity=0.209  Sum_probs=111.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhhh-
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRAI-   77 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-   77 (222)
                      +..++|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||...          +..+ 
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            34589999999999999999999988743 233455556665566667664  467999999531          2222 


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK-ILAET----EGLYFM  152 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  152 (222)
                      ....++.+|++++|+|++++.++.+.. ++..+..   .++|+++|+||+|+.+...  .+... .+...    ...+++
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence            234578999999999999988777754 3333332   3589999999999965321  11111 12221    135689


Q ss_pred             EEccccCCCHHHHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      .+||++|.|+.++|+.+.+.+.+
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998887664

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=8.3e-20  Score=133.81  Aligned_cols=164  Identities=30%  Similarity=0.520  Sum_probs=144.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      -..++++++|..|.|||+++++++.++|.-.+.++.+.+........+...++|..|||.|++.+..+..-++-.+.+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            46899999999999999999999999999999999999999887777666789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      ++||+....++.++..|...+.+.... +|+++.|||.|+.+..  .......+-...++.|+++|++.+-++..-|-|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            999999999999999999999888877 9999999999986522  1233345556678899999999999999999999


Q ss_pred             HHHHHHh
Q 027503          170 INQIHQT  176 (222)
Q Consensus       170 ~~~i~~~  176 (222)
                      .+++...
T Consensus       165 arKl~G~  171 (216)
T KOG0096|consen  165 ARKLTGD  171 (216)
T ss_pred             hhhhcCC
Confidence            9887643

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=7.3e-19  Score=154.64  Aligned_cols=159  Identities=20%  Similarity=0.249  Sum_probs=112.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CCCcceeeEEEEEEE-----CCeEEEEEEEeCCCh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR-----LDS------KPTIGVEFAYRNIRV-----GDKLIKAQIWDTAGQ   71 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~   71 (222)
                      +..-+|+|+|+.++|||||+.+|+...  +.     ...      ....+.++....+.+     ++..+.+.||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            455689999999999999999998632  11     010      011233333222222     455678999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-  150 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  150 (222)
                      ..|...+..++..+|++|+|+|++++........|....    ..++|+++|+||+|+.+..  .......+....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence            999988999999999999999999876555555554322    2348999999999986422  122234444545553 


Q ss_pred             --EEEEccccCCCHHHHHHHHHHHHH
Q 027503          151 --FMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       151 --~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                        ++.+||++|.|+.+++++|.+.+-
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999987764

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2e-19  Score=130.03  Aligned_cols=160  Identities=24%  Similarity=0.377  Sum_probs=120.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC---C----CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEF---R----LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      ..+-|+|+|..++|||||+.++...-.   .    ..-.++.+.+..  ++.+.+  ..+.+||..|++..+++|..|+.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence            457799999999999999998764321   1    111344444444  444443  57899999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---H---HcCCeEEEEcc
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILA---E---TEGLYFMETSA  156 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~---~~~~~~~~~Sa  156 (222)
                      .+|++|+++|+++++.|+.....+..+.. ..-.++|+++.+||.|+.+...  .++.....   .   .+..++.++||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchh
Confidence            99999999999999999887665555433 3456799999999999875322  23332222   2   23478999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHh
Q 027503          157 MQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i~~~  176 (222)
                      .+|+||.+..+|++..+..+
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988766

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=2e-18  Score=155.39  Aligned_cols=155  Identities=20%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSY   81 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   81 (222)
                      ...+|+|+|.+|||||||+|+|++..... ...++.+.+........++  ..|.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            45789999999999999999999865422 2234444444444444554  4689999999653        23445567


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      +..+|++|+|+|+.+.....+ ..|...+..   .++|+++|+||+|+....   ......+....+ ..+++||++|.|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G  423 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG  423 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence            899999999999987533222 234444543   358999999999985421   111222222222 357899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIHQ  175 (222)
Q Consensus       162 i~~~~~~l~~~i~~  175 (222)
                      +.++|+++++.+.+
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999987743

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=1.6e-18  Score=151.60  Aligned_cols=157  Identities=20%  Similarity=0.126  Sum_probs=103.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee--eEEEEEEE--------------CCeEEEEEEEeCCChhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE--FAYRNIRV--------------GDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~   74 (222)
                      +..-|+++|++++|||||+++|.+..+......+.+.+  ........              ......+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45579999999999999999999877643322212111  11111110              000123889999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC------------CHHH
Q 027503           75 RAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV------------NEEE  139 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~  139 (222)
                      ..++..++..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+......            ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9999999999999999999997   44444432    1222   35899999999999642110            0000


Q ss_pred             H------------HHHHH------------Hc--CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          140 G------------KILAE------------TE--GLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       140 ~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .            ..+..            .+  .++++++||++|+|+++++.++.....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            0            01111            11  368999999999999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=1.1e-21  Score=143.15  Aligned_cols=168  Identities=35%  Similarity=0.616  Sum_probs=145.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .+..++++|+|.-|+|||+++.+++...|...+.+++++++..+....++. .+++.|||..|++++..++.-+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            578999999999999999999999999999999999999988877776554 3588899999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHcCCe-EEEEccccCCC
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVN-EEEGKILAETEGLY-FMETSAMQNLN  161 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~Sa~~~~g  161 (222)
                      .++|||+++..+|+.+..|.+.+....    +..+|+++..||+|........ ......+.+++|+. .+++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            999999999999999999999985543    4567889999999986532222 36677888889875 89999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027503          162 VEDAFLQMINQIHQT  176 (222)
Q Consensus       162 i~~~~~~l~~~i~~~  176 (222)
                      +.|.-..+++.+.-.
T Consensus       182 i~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  182 IPEAQRELVEKILVN  196 (229)
T ss_pred             hhHHHHHHHHHHHhh
Confidence            999999998887643

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.80  E-value=7.6e-18  Score=132.47  Aligned_cols=151  Identities=24%  Similarity=0.228  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhhhcCCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------AITSSYYRGAL   86 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d   86 (222)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+.+||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333334444555555566655  578999999975322       22345788999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHH-----------------------------------------HHHH-----------
Q 027503           87 GALLVYDITRRA-TFENTKKWLRE-----------------------------------------LREF-----------  113 (222)
Q Consensus        87 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------l~~~-----------  113 (222)
                      ++++|+|++++. ....+...+..                                         +.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 22222222211                                         1111           


Q ss_pred             -----------cC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          114 -----------CS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       114 -----------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                                 .+  .-+|+++|+||+|+..     .++...++..  ..++++||++|.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       00  1268999999999854     3444445443  4589999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.9e-18  Score=143.24  Aligned_cols=151  Identities=21%  Similarity=0.154  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hhhhHhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF---------RAITSSYY   82 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~   82 (222)
                      ..|+|+|.||||||||+|+|.+..... ...|.++.+..+......+  ..|.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            679999999999999999999987653 3467777787777777777  45899999996531         23455678


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..||++|+|+|...+-+-.+ ......++.   .++|+++|+||+|-..    ..+.+.+|...-.-.++.+||.+|.|+
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence            89999999999988654333 222333342   2389999999999642    123333444433346899999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          163 EDAFLQMINQI  173 (222)
Q Consensus       163 ~~~~~~l~~~i  173 (222)
                      .++++.++..+
T Consensus       154 ~dLld~v~~~l  164 (444)
T COG1160         154 GDLLDAVLELL  164 (444)
T ss_pred             HHHHHHHHhhc
Confidence            99999999887

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=2.7e-18  Score=146.45  Aligned_cols=155  Identities=17%  Similarity=0.111  Sum_probs=102.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC--cCC-----------------------------CCCCCCcceeeEEEEEEEC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD--EFR-----------------------------LDSKPTIGVEFAYRNIRVG   57 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   57 (222)
                      ....++|+++|+.++|||||+++|+..  ...                             .......+.+.....+.. 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            456789999999999999999999852  111                             011223344444444443 


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-
Q 027503           58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTHSREV-  135 (222)
Q Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-  135 (222)
                       ....+.||||||++.|.......+..+|++++|+|+++++++..... +...+..... ..|++|++||+|+.+.... 
T Consensus        83 -~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        83 -DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             -CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence             44689999999999887666667889999999999998754322111 1111222222 2578899999999642211 


Q ss_pred             ---CHHHHHHHHHHcC-----CeEEEEccccCCCHHHHH
Q 027503          136 ---NEEEGKILAETEG-----LYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       136 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  166 (222)
                         ...+...++...+     ++++++||++|.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence               1233445555554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=5e-18  Score=126.22  Aligned_cols=150  Identities=19%  Similarity=0.242  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhHhhhc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAITSSYYR   83 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~   83 (222)
                      .|+++|.+|+|||||++.+.+..+.....++.+.+.....+..++   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996555444445544444444444444   78999999943          23344444444


Q ss_pred             ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HHHHHHHH--HcCCeEEEE
Q 027503           84 ---GALGALLVYDITRRATF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EEGKILAE--TEGLYFMET  154 (222)
Q Consensus        84 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~--~~~~~~~~~  154 (222)
                         ..+++++++|.++..+.  ..+..|+..   .   +.|+++|+||+|+........  ........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45788999999876322  223333322   2   389999999999854322111  11122222  334679999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.|+.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.78  E-value=2.6e-18  Score=133.11  Aligned_cols=146  Identities=24%  Similarity=0.224  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCC-------------------------------CCCCcceeeEEEEEEECCeEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLD-------------------------------SKPTIGVEFAYRNIRVGDKLIK   62 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (222)
                      ||+|+|++|+|||||+++|+...-...                               ..+..+.+.....+..+  ...
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence            689999999999999999975332111                               01223333333333333  357


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC----CHH
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV----NEE  138 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~  138 (222)
                      +.+|||||++.+.......+..+|++++|+|++++..-.. ......+....  ..++++|+||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8899999998877666777899999999999987632222 22222222221  1357778999998642211    112


Q ss_pred             HHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503          139 EGKILAETEG---LYFMETSAMQNLNVED  164 (222)
Q Consensus       139 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~  164 (222)
                      +...+....+   .+++++||++|.|+.+
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            2334445555   4599999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=6.7e-18  Score=140.29  Aligned_cols=153  Identities=22%  Similarity=0.209  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYY   82 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~   82 (222)
                      -++++++|.||+|||||+|.|.+.+.. .+..|.++.++-...+.++|  +.+.++||+|..+...        -....+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            479999999999999999999998865 44578888888888999988  6689999999654322        133567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..||.+++|+|.+.+.+-.+.. .    ......+.|+++|.||.|+.........     ....+.+++.+|+++|+|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~-~----~~~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLA-L----IELLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHH-H----HHhcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence            8999999999999863323221 1    1134455899999999999864332111     2223457999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027503          163 EDAFLQMINQIHQT  176 (222)
Q Consensus       163 ~~~~~~l~~~i~~~  176 (222)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99998888877655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=3.8e-18  Score=141.38  Aligned_cols=171  Identities=22%  Similarity=0.175  Sum_probs=118.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhh-hh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRA-IT   78 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~~   78 (222)
                      ..+||+|+|.|++|||||+|+|++.+.... ..+..+.+.-...+..++  ..+.++||+|...          |.. -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            579999999999999999999999875433 345555555556666666  4679999999432          221 12


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-T----EGLYFME  153 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~  153 (222)
                      ...+..+|++++|+|+..+.+-++.+ ....+.   ..+.+++||+||+|+.+......+..+.... .    ...+++.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            34677999999999999987766533 333333   3448899999999998754333333332222 2    2368999


Q ss_pred             EccccCCCHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND  188 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~  188 (222)
                      +||.+|.|+.++|+.+.. +++....+-+++.+|+
T Consensus       331 iSA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts~LN~  364 (444)
T COG1160         331 ISALTGQGLDKLFEAIKE-IYECATRRISTSLLNR  364 (444)
T ss_pred             EEecCCCChHHHHHHHHH-HHHHhccccCHHHHHH
Confidence            999999999999976655 4445555555544444

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.3e-19  Score=124.47  Aligned_cols=161  Identities=21%  Similarity=0.275  Sum_probs=120.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++..+|+++|-.|+||++++-++.-.+. ....|+++.+.....    .+.+++.+||..|+...+..|+-|+.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEE
Confidence            3789999999999999999988876664 445677777666333    35588999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHHHcCCeEEEEccccCCCHHH
Q 027503           90 LVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG----KILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +|+|.+|......... ++..+.+-.-.+..++|++||.|... .....|..    ....+.+-+.++++||.+|+|++.
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999876555443 33444333333366788899999854 21112222    122233447899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027503          165 AFLQMINQIHQT  176 (222)
Q Consensus       165 ~~~~l~~~i~~~  176 (222)
                      .++|+.+.+.++
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999877643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.78  E-value=5.5e-18  Score=148.74  Aligned_cols=156  Identities=21%  Similarity=0.241  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC--cCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD--EFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS   79 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   79 (222)
                      +|+|+|+.++|||||+++|+..  .+....            ....+.++......+.+....+.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999852  221111            11223444444333434447899999999999998899


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHH-------HHcCCeE
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILA-------ETEGLYF  151 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~-------~~~~~~~  151 (222)
                      .++..+|++++|+|+.+.. ......|+..+...   ++|++||+||+|+.+.+.. -..+...+.       ....+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998753 33445565555543   4899999999998653211 012222222       2235789


Q ss_pred             EEEccccCC----------CHHHHHHHHHHHH
Q 027503          152 METSAMQNL----------NVEDAFLQMINQI  173 (222)
Q Consensus       152 ~~~Sa~~~~----------gi~~~~~~l~~~i  173 (222)
                      +.+||++|.          |+..+|+.+++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999996          7888888887765

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.78  E-value=3.9e-18  Score=145.47  Aligned_cols=153  Identities=20%  Similarity=0.195  Sum_probs=99.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCCCcceeeEEEEEEECC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-------------------------------DSKPTIGVEFAYRNIRVGD   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   58 (222)
                      ...++|+++|++++|||||+++|+...-..                               ...+..+.+.....+.  .
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--~   81 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--T   81 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe--c
Confidence            456899999999999999999998432110                               1123333444333333  3


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC---
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHSRE---  134 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~---  134 (222)
                      ....+.+|||||++.|.......+..+|++++|+|+++...+.. ...++..+....  ..|++|++||+|+.+...   
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHH
Confidence            44689999999998876655566789999999999987312211 122222222222  146899999999975211   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEEccccCCCHHHHH
Q 027503          135 -VNEEEGKILAETEG-----LYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       135 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  166 (222)
                       ...++...+....+     ++++++||++|.|+.+.+
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             01123344444444     579999999999998754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.77  E-value=3.3e-18  Score=119.76  Aligned_cols=159  Identities=22%  Similarity=0.300  Sum_probs=120.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ...+.+||+++|-.++|||||++.|.+... ..-.||.+.+..  .+...+ .+.+.+||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k--~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTK--KVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceE--EEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence            346899999999999999999999987653 333455555444  334433 3689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCC
Q 027503           88 ALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLN  161 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  161 (222)
                      +|+|+|.+|...|+++...+.++ ....-..+|+++..||.|+.....  .++....+     ..+...+.++|+.+++|
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~eg  166 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLEG  166 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCccccccC
Confidence            99999999988888876655554 333445699999999999865322  22222222     22336789999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          162 VEDAFLQMINQ  172 (222)
Q Consensus       162 i~~~~~~l~~~  172 (222)
                      +....+|+...
T Consensus       167 ~~dg~~wv~sn  177 (185)
T KOG0074|consen  167 STDGSDWVQSN  177 (185)
T ss_pred             ccCcchhhhcC
Confidence            99998887654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=2.6e-17  Score=144.40  Aligned_cols=158  Identities=20%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceee--EEEEEEE----CCeE-----E-----EEEEEeCCChh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF--AYRNIRV----GDKL-----I-----KAQIWDTAGQE   72 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-----~-----~~~l~Dt~G~~   72 (222)
                      ..+.+.|+++|++++|||||+++|.+..+........+.+.  +......    .+..     .     .+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            34677899999999999999999987654322221111111  1111110    0111     1     26899999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC----CH--------
Q 027503           73 RFRAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV----NE--------  137 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~----~~--------  137 (222)
                      .|..++...+..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+......    ..        
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            999988888999999999999997   45554433    1222   35899999999998531110    00        


Q ss_pred             HH-----------HHHHHHH---------------cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          138 EE-----------GKILAET---------------EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       138 ~~-----------~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ..           .......               ..++++++||.+|.|+.++++.+...+
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            00           0001111               126799999999999999998876543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.77  E-value=1.9e-17  Score=146.05  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +-|+++|+.++|||||+++|.+..   +.+......+++.....+...+. ..+.+||+||++.|.......+..+|+++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            358999999999999999998643   33334445555555444444322 35799999999998777777889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHcC---CeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVN--EEEGKILAETEG---LYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~  163 (222)
                      +|+|++++.. ......+..+...   ++| ++||+||+|+.+.....  .++...+....+   .+++++||++|.|++
T Consensus        80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            9999987421 1112222222222   245 57899999997532221  123334444333   689999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          164 DAFLQMINQIH  174 (222)
Q Consensus       164 ~~~~~l~~~i~  174 (222)
                      ++++.|.....
T Consensus       156 ~L~~~L~~~~~  166 (614)
T PRK10512        156 ALREHLLQLPE  166 (614)
T ss_pred             HHHHHHHHhhc
Confidence            99988876543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=3.5e-17  Score=125.21  Aligned_cols=148  Identities=19%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC------CC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRL------DS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI   77 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   77 (222)
                      .++|+++|+.++|||||+++|+......      .+        ....+.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4789999999999999999998531000      00        012233333334444444567899999999888777


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHc-----C
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETE-----G  148 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~  148 (222)
                      ....+..+|++++|+|+..+..-. ....+..+...   ++| +++++||+|+........   .+...+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            778888999999999998753322 22333333333   366 778899999864222111   1233333333     3


Q ss_pred             CeEEEEccccCCCHH
Q 027503          149 LYFMETSAMQNLNVE  163 (222)
Q Consensus       149 ~~~~~~Sa~~~~gi~  163 (222)
                      ++++++||.+|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            689999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=9.7e-18  Score=141.96  Aligned_cols=166  Identities=20%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEEEEE------------------C--C--
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRNIRV------------------G--D--   58 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~--   58 (222)
                      ||+. ....++|+++|+.++|||||+.+|.+....   .......+.+.......+                  +  +  
T Consensus         2 ~~~~-~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (411)
T PRK04000          2 MWEK-VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE   80 (411)
T ss_pred             Cccc-CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccc
Confidence            4443 345699999999999999999999653211   111112222221111010                  0  0  


Q ss_pred             --eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           59 --KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        59 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                        ....+.+|||||++.|..........+|++++|+|++++. ...... .+..+....  ..|+++|+||+|+.+....
T Consensus        81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDIIG--IKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcC--CCcEEEEEEeeccccchhH
Confidence              1257899999999988766666667789999999999653 111111 122222221  1468999999999753321


Q ss_pred             C--HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          136 N--EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       136 ~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .  .+....+...   .+.+++++||++|.|++++++.|...+
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            1  1223333332   247899999999999999999887755

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=3.1e-17  Score=122.75  Aligned_cols=162  Identities=18%  Similarity=0.234  Sum_probs=112.4

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRA   76 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   76 (222)
                      -+.+...-|+++|.+|||||||||+|+++.-..-...+.|.+.....+.+++.   +.++|.||          .+.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            34456778999999999999999999997633333466667777777777763   78999999          345666


Q ss_pred             hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHcCCe
Q 027503           77 ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG---KILAETEGLY  150 (222)
Q Consensus        77 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~  150 (222)
                      +...|+..   ..++++++|+..+..-.+. ..++.+..   .++|++||+||+|.....+......   ..+.......
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence            77777753   4678889999876544332 22233333   3499999999999986444332111   1222222222


Q ss_pred             --EEEEccccCCCHHHHHHHHHHHHHH
Q 027503          151 --FMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       151 --~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                        ++..|+..+.|++++...|.+.+.+
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhhc
Confidence              8889999999999999888877654

>PRK10218 GTP-binding protein; Provisional

Probab=99.77  E-value=3e-17  Score=144.02  Aligned_cols=159  Identities=16%  Similarity=0.164  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR--DEFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA   76 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   76 (222)
                      ...+|+|+|+.++|||||+++|+.  +.+....            ..+.+.++......+......+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  3332211            22345566555566655668999999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcC
Q 027503           77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILAE-------TEG  148 (222)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~  148 (222)
                      .+..+++.+|++|+|+|+.+...... ..++..+..   .++|+++++||+|+...+.. ..++...+..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999987643222 333333333   34889999999998643211 1112222221       134


Q ss_pred             CeEEEEccccCC----------CHHHHHHHHHHHH
Q 027503          149 LYFMETSAMQNL----------NVEDAFLQMINQI  173 (222)
Q Consensus       149 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i  173 (222)
                      ++++.+||.+|.          |+..+++.+++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            789999999998          5777777666554

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.77  E-value=9.2e-18  Score=142.10  Aligned_cols=162  Identities=24%  Similarity=0.230  Sum_probs=104.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEE--------------EEE----CC------eEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRN--------------IRV----GD------KLIK   62 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~   62 (222)
                      ...++|+++|++++|||||+++|.+.....   ......+.......              ++.    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467899999999999999999997532211   11111111111100              001    11      1357


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHH
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEG  140 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~  140 (222)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+... .. .|+++++||+|+.+....  ..++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi-~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GI-KNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CC-CeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999888888888999999999999753112222223323222 11 468999999999753221  11222


Q ss_pred             HHHHHHc---CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          141 KILAETE---GLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       141 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ..+....   +++++++||++|.|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            3333332   57899999999999999999887654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=1.5e-17  Score=130.94  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI   77 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   77 (222)
                      +|+++|+.|+|||||+++|+...-....                ....+.++......+......+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863211000                011122233333333334478999999999998888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      +..+++.+|++++|+|+.+.... ....++..+...   ++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            88999999999999999987543 334455555443   489999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.76  E-value=1.4e-17  Score=119.37  Aligned_cols=135  Identities=24%  Similarity=0.269  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhhhcCCcEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSYYRGALGAL   89 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i   89 (222)
                      ||+|+|+.|||||||+++|.+.+.  .+..|..+.+.       +     .++||||.-    .+.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988664  33333322221       1     358999933    23333445556999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|.|++++.+... ..+...+      ..|+|=|+||+|+.. .....+.++.+....|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-P~fa~~f------~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGFASMF------NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-chhhccc------CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998754322 1111111      279999999999974 233566777888888864 899999999999999988


Q ss_pred             HH
Q 027503          169 MI  170 (222)
Q Consensus       169 l~  170 (222)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.76  E-value=3.7e-17  Score=128.68  Aligned_cols=164  Identities=20%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------------
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------------   73 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------   73 (222)
                      +.+-.+.++|+++|.||+|||||.|.+++..+.+.+....+.....-.+-..+. ..+.|+||||.-.            
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHH
Confidence            345568999999999999999999999999988777665554444433333333 4899999999321            


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------------CCCC---H
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------------REVN---E  137 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------------~~~~---~  137 (222)
                      +-......+..||.+++|+|+++...... ...+..+..+.  .+|-++|+||+|....             ..+.   .
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence            11133456779999999999997433222 22344454443  2788999999997532             1111   1


Q ss_pred             HHHHHHHHHc---------CC----eEEEEccccCCCHHHHHHHHHHHH
Q 027503          138 EEGKILAETE---------GL----YFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       138 ~~~~~~~~~~---------~~----~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      +..+.|....         |.    .+|.+||+.|+|++++-++|...+
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            2222232221         11    389999999999999999988754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=2.8e-17  Score=142.02  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=122.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh------hhhhHhhhc-
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF------RAITSSYYR-   83 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~~-   83 (222)
                      +..+|+++|+||||||||+|+|.+......+.|..+++.....+...+.  .++++|.||.-..      +...++|+. 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            3456999999999999999999999888888999988888888888774  4899999995432      234455543 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           84 -GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        84 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                       ..|+++-|+|+++.+..-.+   ..++.+.   ++|++++.|++|..+.+.+ .-+...+.+..|+|+++++|++|.|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYL---TLQLLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHH---HHHHHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCH
Confidence             66999999999987543322   2233333   4899999999998765443 45678889999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++...+++....
T Consensus       153 ~~l~~~i~~~~~~  165 (653)
T COG0370         153 EELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHHhccc
Confidence            9999888764443

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=2.5e-17  Score=128.03  Aligned_cols=113  Identities=25%  Similarity=0.294  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------CCCcceeeEEEEEE--E---CCeEEEEEEEeCCCh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-----------------KPTIGVEFAYRNIR--V---GDKLIKAQIWDTAGQ   71 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~   71 (222)
                      +|+|+|+.++|||||+++|+........                 ....+.+.....+.  +   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875443221                 01112222222222  2   345678999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      ..+......++..+|++++|+|+.+..+... ..|+..+..   .++|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888889999999999999988765543 334343322   348999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.73  E-value=1.8e-17  Score=140.10  Aligned_cols=168  Identities=24%  Similarity=0.291  Sum_probs=124.3

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      +..+....+||+++|+.|+|||||+-+|...+|.+.-.+-. ..+ ....+.....+...++|++....-+......++.
T Consensus         2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk   79 (625)
T KOG1707|consen    2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK   79 (625)
T ss_pred             CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-Ccc-ccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence            45566789999999999999999999999998865542222 111 1113333334567899998766555566788999


Q ss_pred             CcEEEEEEeCCChhhHHHHH-HHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-C-eEEEEcccc
Q 027503           85 ALGALLVYDITRRATFENTK-KWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEEE-GKILAETEG-L-YFMETSAMQ  158 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~  158 (222)
                      ||++.++|+++++++++.+. +|+..++...  ..++|+|+||||+|..+....+.+. ...+..++. + ..++|||++
T Consensus        80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            99999999999999999985 5999998876  3669999999999998755543333 222222222 3 378999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIH  174 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~  174 (222)
                      -.++.++|....+++.
T Consensus       160 ~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVI  175 (625)
T ss_pred             hhhhHhhhhhhhheee
Confidence            9999999977766654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.73  E-value=4.2e-17  Score=127.30  Aligned_cols=146  Identities=18%  Similarity=0.149  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC-------------------------------CCCCCCcceeeEEEEEEECCeEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFR-------------------------------LDSKPTIGVEFAYRNIRVGDKLIK   62 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   62 (222)
                      +|+++|+.++|||||+.+|+...-.                               .......+.+.....+...  ...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence            5899999999999999998632100                               0001222333333344444  468


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC--C
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---F---ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR--E  134 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~  134 (222)
                      +.+|||||+..+...+...+..+|++++|+|++++..   +   ......+..... .. ..|+++++||+|+....  .
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccH
Confidence            8999999998777767777889999999999998521   1   111222222222 22 26889999999987321  1


Q ss_pred             CCHH----HHHHHHHHc-----CCeEEEEccccCCCHH
Q 027503          135 VNEE----EGKILAETE-----GLYFMETSAMQNLNVE  163 (222)
Q Consensus       135 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi~  163 (222)
                      ...+    ....+....     +++++++||++|.|+.
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            0011    112223333     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.9e-16  Score=133.62  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=95.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----------C---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-----------D---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      ....++|+++|+.++|||||+++|++.....           .   .....+.+.......+......+.++||||++.|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3457899999999999999999998632100           0   0012233333344445444457899999999988


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHcC--
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETEG--  148 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~--  148 (222)
                      .......+..+|++++|+|++++..-.. ..++..+...   ++| +++++||+|+.+......   ++...+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            7766777789999999999987532222 2233333333   377 578899999874322211   23334444443  


Q ss_pred             ---CeEEEEccccCC
Q 027503          149 ---LYFMETSAMQNL  160 (222)
Q Consensus       149 ---~~~~~~Sa~~~~  160 (222)
                         ++++++||.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T PRK12736        165 GDDIPVIRGSALKAL  179 (394)
T ss_pred             cCCccEEEeeccccc
Confidence               589999999983

>COG2262 HflX GTPases [General function prediction only]

Probab=99.73  E-value=2.3e-16  Score=129.17  Aligned_cols=162  Identities=21%  Similarity=0.127  Sum_probs=125.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITSSY   81 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~   81 (222)
                      ...+.|+++|..|+|||||+|.|.+........-..+.+...+.+.+.+ ...+.+.||.|.-..        ...+...
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4567899999999999999999998887777777788888888888876 347899999995421        1224445


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      ...+|+++.|+|+++|...+.+..-...+.+.....+|+|+|.||+|+.....    .......... ..+.+||++|.|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence            66899999999999997777777777777777666699999999999765333    1111111112 589999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027503          162 VEDAFLQMINQIHQTT  177 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~  177 (222)
                      ++.+.+.|.+.+....
T Consensus       344 l~~L~~~i~~~l~~~~  359 (411)
T COG2262         344 LDLLRERIIELLSGLR  359 (411)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999988877554

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.73  E-value=1.3e-16  Score=134.81  Aligned_cols=148  Identities=17%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcC----------------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEF----------------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ++....++|+++|+.++|||||+++|++...                ......  +.+.....+.++.....+.+|||||
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--G~Ti~~~~~~~~~~~~~~~liDtpG   84 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKAR--GITINTAHVEYETENRHYAHVDCPG   84 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhc--CcceeeEEEEEcCCCEEEEEEECCc
Confidence            4456789999999999999999999974210                001112  3333334445544556789999999


Q ss_pred             hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHH
Q 027503           71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAET  146 (222)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~  146 (222)
                      ++.|.......+..+|++++|+|++++..... ...+..+...   ++|.+ +++||+|+.+.....   .++...+...
T Consensus        85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~  160 (394)
T TIGR00485        85 HADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            99887666667788999999999987432222 2223333322   36765 679999987532211   1234455555


Q ss_pred             cC-----CeEEEEccccCC
Q 027503          147 EG-----LYFMETSAMQNL  160 (222)
Q Consensus       147 ~~-----~~~~~~Sa~~~~  160 (222)
                      .+     ++++++|+.+|.
T Consensus       161 ~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       161 YDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             cCCCccCccEEECcccccc
Confidence            44     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=125.72  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=116.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhh----hhhHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-----RFR----AITSSY   81 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~----~~~~~~   81 (222)
                      -.+.|+|.|.||||||||++.+.+........|.++..+...++..++  .+++++||||.=     +.+    ....+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            456799999999999999999999887777778887888888877766  678999999921     111    122233


Q ss_pred             hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           82 YRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      -+-.++++|+||.+.  +.+.+.-..++..+.....  .|+++|.||+|+.+.+.+.  ++.......+ .....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence            345688999999885  4566666667788877765  7999999999998644433  2333333333 4477888999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 027503          159 NLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~~  176 (222)
                      +.+++.+-..+...+.+.
T Consensus       321 ~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         321 GCGLDKLREEVRKTALEP  338 (346)
T ss_pred             hhhHHHHHHHHHHHhhch
Confidence            999988877777665443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=1.8e-16  Score=123.82  Aligned_cols=150  Identities=19%  Similarity=0.144  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCC-----------------------cceeeEE---------------EEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPT-----------------------IGVEFAY---------------RNIR   55 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~   55 (222)
                      ||+++|+.++|||||+++|..+.+.......                       .+.+...               ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999876654322100                       0001000               0111


Q ss_pred             ECCeEEEEEEEeCCChhhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           56 VGDKLIKAQIWDTAGQERFRAITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      ..  ...+.++||||++.|.......+.  .+|++++|+|++.+..-. ...++..+...   ++|+++|+||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~---~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL---NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence            11  247899999999887654444443  689999999998764322 23344444433   38999999999986432


Q ss_pred             CCCHHHHHHHHHH-----------------------------cCCeEEEEccccCCCHHHHHHHHH
Q 027503          134 EVNEEEGKILAET-----------------------------EGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus       134 ~~~~~~~~~~~~~-----------------------------~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ... .....+...                             ..++++.+|+.+|.|++++...|.
T Consensus       155 ~~~-~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQ-ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHH-HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            211 111111111                             124899999999999999886653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12735 elongation factor Tu; Reviewed

Probab=99.72  E-value=3.3e-16  Score=132.22  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=101.6

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ++....++|+++|++++|||||+++|++..       +...       .....+.+.......+......+.|+||||++
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            344567999999999999999999998621       0000       00112333333334444444578999999998


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAETEG  148 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~  148 (222)
                      .|.......+..+|++++|+|+.+.... ....++..+..   .++|.+ +++||+|+.+.....   ..+...+....+
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            8877667778899999999999875322 22233333332   237765 579999997422211   113344444432


Q ss_pred             -----CeEEEEccccCC----------CHHHHHHHHHH
Q 027503          149 -----LYFMETSAMQNL----------NVEDAFLQMIN  171 (222)
Q Consensus       149 -----~~~~~~Sa~~~~----------gi~~~~~~l~~  171 (222)
                           ++++++|+.+|.          ++.++++.|..
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS  200 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence                 679999999985          45555555544

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=5.8e-16  Score=131.31  Aligned_cols=158  Identities=18%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------CCCcceeeEEEEEEECCeEEEEEEE
Q 027503            1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------KPTIGVEFAYRNIRVGDKLIKAQIW   66 (222)
Q Consensus         1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~   66 (222)
                      |++--.+.....++|+++|++++|||||+++|++.......              ....+.+.......+......+.|+
T Consensus         1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i   80 (409)
T CHL00071          1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV   80 (409)
T ss_pred             CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence            33323344566799999999999999999999864211000              0112233333333343344578899


Q ss_pred             eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHH
Q 027503           67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKI  142 (222)
Q Consensus        67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~  142 (222)
                      ||||+..|.......+..+|++++|+|+..+..-. ....+..+...   ++| +++++||+|+.+......   .+...
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~  156 (409)
T CHL00071         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRE  156 (409)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            99999888776777788999999999998753322 22233333332   377 668899999975322111   12333


Q ss_pred             HHHHcC-----CeEEEEccccCCCH
Q 027503          143 LAETEG-----LYFMETSAMQNLNV  162 (222)
Q Consensus       143 ~~~~~~-----~~~~~~Sa~~~~gi  162 (222)
                      +....+     ++++++|+.+|.++
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        157 LLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHhCCCCCcceEEEcchhhcccc
Confidence            333332     68999999998743

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=9.2e-16  Score=129.31  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=117.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      .+.+-|.+||+...|||||+..+-...+...-.-.++..+.-..+..+. ..-.++|+||||++.|..++..-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3567799999999999999999988776655445555555555666541 223789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEccccC
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG---------LYFMETSAMQN  159 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~  159 (222)
                      |+|+++++.--    .+....+......++|++|++||+|..+.+   .+....-..++|         ..++++||++|
T Consensus        83 ILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          83 ILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            99999998622    122333455556669999999999987432   222222222222         56999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 027503          160 LNVEDAFLQMINQIHQT  176 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~  176 (222)
                      +|++++++.+.-...-.
T Consensus       156 ~Gi~eLL~~ill~aev~  172 (509)
T COG0532         156 EGIDELLELILLLAEVL  172 (509)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999997766554433

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.69  E-value=8.1e-16  Score=121.73  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhhhcCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAITSSYYRGA   85 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~   85 (222)
                      ..|.++|.|++|||||+++|....-.....+.++..-....+.+++.. .+++-|.||..+-       .......+..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            457899999999999999999876544444555555555566665543 4899999995431       12234556789


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccC
Q 027503           86 LGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQN  159 (222)
Q Consensus        86 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  159 (222)
                      +.++||+|++.+   ..++.++.+..++..+.+  ...|.++|+||+|+.+..   .....+++....- .++++||+++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999998   777777776666655542  558999999999985321   2223556665553 4999999999


Q ss_pred             CCHHHHHHHHHH
Q 027503          160 LNVEDAFLQMIN  171 (222)
Q Consensus       160 ~gi~~~~~~l~~  171 (222)
                      +|+.++++.|.+
T Consensus       353 egl~~ll~~lr~  364 (366)
T KOG1489|consen  353 EGLEELLNGLRE  364 (366)
T ss_pred             cchHHHHHHHhh
Confidence            999999877654

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=1.8e-15  Score=121.20  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC----------C----------CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK----------P----------TIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      -+|+|+|++|+|||||+++|+...-.....          .          ..+.++......++.....+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997532111100          0          01233334444455555789999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      .|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8887777788999999999999876432 22333333332   3589999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.68  E-value=1.3e-15  Score=117.05  Aligned_cols=158  Identities=13%  Similarity=0.170  Sum_probs=95.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhhc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYYR   83 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~   83 (222)
                      +++|+|+|.+|+|||||+|.|.+.........+.+.   ......+.... ...+.+|||||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986654322222221   11111122111 23689999999753222     2223366


Q ss_pred             CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-------CH-HHH---HHH----HHHc
Q 027503           84 GALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHSREV-------NE-EEG---KIL----AETE  147 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~-~~~---~~~----~~~~  147 (222)
                      .+|+++++.+.  +  +... ..|+..+...   +.|+++|+||+|+......       .. +..   +..    ....
T Consensus        80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887432  2  2222 3455555554   4799999999998531110       01 111   111    1121


Q ss_pred             C---CeEEEEccc--cCCCHHHHHHHHHHHHHHhh
Q 027503          148 G---LYFMETSAM--QNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       148 ~---~~~~~~Sa~--~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +   -+++.+|+.  .+.|+..+.+.++..+-+.+
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            2   368999998  57899999999998887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00049 elongation factor Tu; Reviewed

Probab=99.68  E-value=2.7e-15  Score=126.71  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---C---C--------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---L---D--------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~---~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ++....++|+++|+.++|||||+++|++....   .   .        .....+.+.......+......+.++||||+.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            44467899999999999999999999863110   0   0        00122333333344444444578899999998


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHc-
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAETE-  147 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~-  147 (222)
                      .|.......+..+|++++|+|+..+..- ....++..+...   ++|.+ +++||+|+.+.....   ..+...+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            8877677778999999999999875332 223333434333   37876 579999986422211   11222333332 


Q ss_pred             ----CCeEEEEccccCC
Q 027503          148 ----GLYFMETSAMQNL  160 (222)
Q Consensus       148 ----~~~~~~~Sa~~~~  160 (222)
                          +++++.+|+.+|.
T Consensus       163 ~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        163 FPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCccCCcEEEeeccccc
Confidence                3689999999875

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=1.8e-15  Score=121.73  Aligned_cols=144  Identities=14%  Similarity=0.183  Sum_probs=92.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-----   74 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----   74 (222)
                      ...++|+|+|.+|+|||||+|+|++..+....          .++.........+..++..+.+.+|||||....     
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            35789999999999999999999988765442          233344445556666788889999999994321     


Q ss_pred             --hh-------------------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           75 --RA-------------------ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        75 --~~-------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                        ..                   .+...+.  .+|+++++++.+... .....  +..+..... ++|+++|+||+|+..
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~  157 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLT  157 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCC
Confidence              00                   1112222  467888888876421 11110  222222222 489999999999865


Q ss_pred             CCC--CCHHHHHHHHHHcCCeEEEEccc
Q 027503          132 SRE--VNEEEGKILAETEGLYFMETSAM  157 (222)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~  157 (222)
                      ..+  .......+.+..+++.++.....
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            222  22344556677788888876654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=8.7e-16  Score=119.71  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=109.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYY   82 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~   82 (222)
                      ...++|+++|.+|+|||||+|+|++++..+...-..+.+.........+. -.+.|||+||-++       ++.+...++
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            45789999999999999999999977665554333334443333222222 4689999999543       778889999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH--------c
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------REVNEEEGKILAET--------E  147 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~--------~  147 (222)
                      ...|.++++++++++.---+...|...+. .. .+.|+++++|++|....       ...+....+++...        .
T Consensus       116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~-~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDEDFLRDVII-LG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCHHHHHHHHH-hc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999753223233333332 22 22789999999998643       11222222222221        1


Q ss_pred             --CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          148 --GLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       148 --~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                        =-|++.++...+.|++++...++..+-
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence              136888889999999999999887654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=1.8e-15  Score=117.78  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEEC--------CeEEEEEEEeCC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVG--------DKLIKAQIWDTA   69 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   69 (222)
                      +|+++|+.++|||||+.+|+........                ....++......+.+.        +....+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6999999999999999999754311000                1111122222222332        336789999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      |++.|......++..+|++++|+|+.++....... .+..+.   ..++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCCcc
Confidence            99999999999999999999999999876544322 222222   2348999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.65  E-value=2e-15  Score=127.90  Aligned_cols=147  Identities=24%  Similarity=0.241  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------------------CCCCcceeeEEEEEEECCe
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLD---------------------------------SKPTIGVEFAYRNIRVGDK   59 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   59 (222)
                      ++|+++|+.++|||||+.+|+...-...                                 .....+.+.....+..  .
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence            5899999999999999999863221100                                 0111223333333333  3


Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--  137 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--  137 (222)
                      ...+.|+||||++.|.......+..+|++++|+|+..+..-.. ...+..+.... . .+++|++||+|+.+......  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~-~-~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG-I-RHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC-C-CcEEEEEEecccccchHHHHHH
Confidence            4578999999999887666677899999999999987642222 11122222222 1 46888999999865221111  


Q ss_pred             --HHHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503          138 --EEGKILAETEG---LYFMETSAMQNLNVED  164 (222)
Q Consensus       138 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  164 (222)
                        ++...+....+   ++++++||.+|.|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              11222333333   5799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=7.5e-16  Score=123.80  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      +|+|+|++|+|||||+++|+........                  ....+.......+..++  ..+.+|||||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999753211110                  00111222223344443  578999999998887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE--EE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYF--ME  153 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~  153 (222)
                      ..+..++..+|++++|+|+++.........| ..+..   .++|+++++||+|+... . ..+....+....+.++  +.
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~-~-~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA-D-FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC-C-HHHHHHHHHHHhCCCeEEEE
Confidence            7888899999999999999987554433323 22332   34899999999998653 1 1233344444455443  33


Q ss_pred             EccccCCCHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQM  169 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l  169 (222)
                      ++..++.++..+++.+
T Consensus       153 ip~~~~~~~~~~vd~~  168 (268)
T cd04170         153 LPIGEGDDFKGVVDLL  168 (268)
T ss_pred             ecccCCCceeEEEEcc
Confidence            4455555554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=9.4e-16  Score=110.33  Aligned_cols=155  Identities=19%  Similarity=0.279  Sum_probs=115.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.-|++++|-.|+|||||++.|.+... ..+.||...+  ...+.+.+  .+|+.+|.+|+...+..|..++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            455899999999999999999987664 3444554222  23445555  678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---HH---c-----------CCeEE
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILA---ET---E-----------GLYFM  152 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~-----------~~~~~  152 (222)
                      .+|+-+.+.|.+.+..++.+.... -..+|+++.+||+|....-  +.++.+...   ..   .           -+.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999988877766654433 3459999999999986532  333322111   11   1           13578


Q ss_pred             EEccccCCCHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      .||...+.|..+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            89999999988888877543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=6.4e-15  Score=125.81  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC--------------C------------CC---CCCcceeeEEEEEEECCeE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR--------------L------------DS---KPTIGVEFAYRNIRVGDKL   60 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~--------------~------------~~---~~~~~~~~~~~~~~~~~~~   60 (222)
                      ...++|+++|+.++|||||+.+|+...-.              .            ..   ....+.+.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            45689999999999999999988632110              0            00   0112233333344455555


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFE-------NTKKWLRELREFCSSCMA-IVLVGNKSDLTHS  132 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~  132 (222)
                      ..+.++|+||++.|.......+..+|++|+|+|+++. .|+       .....+..+...   ++| ++|++||+|+.+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCch
Confidence            7899999999999998889999999999999999873 222       223322222222   364 6788999998621


Q ss_pred             CCCC-------HHHHHHHHHHcC-----CeEEEEccccCCCHHH
Q 027503          133 REVN-------EEEGKILAETEG-----LYFMETSAMQNLNVED  164 (222)
Q Consensus       133 ~~~~-------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  164 (222)
                       .+.       .++...+....+     ++|+++|+.+|+|+.+
T Consensus       161 -~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 -KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence             111       234455555555     6799999999999854

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.65  E-value=6.2e-15  Score=127.99  Aligned_cols=120  Identities=19%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------C----------CCCcceeeEEEEEEECCeEEEEEEEe
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------S----------KPTIGVEFAYRNIRVGDKLIKAQIWD   67 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~l~D   67 (222)
                      +-+...+|+|+|++++|||||+++|+...-...          .          ....+.++......+......+.+||
T Consensus         6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD   85 (526)
T PRK00741          6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD   85 (526)
T ss_pred             hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence            345677999999999999999999973111000          0          00112333333334444457899999


Q ss_pred             CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |||+..|......++..+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            999998888778889999999999999875322 22334333332   3589999999999753

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=4.2e-15  Score=119.17  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC------------------CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFR------------------LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      +|+++|++++|||||+++|+...-.                  .......+.+.....+...+  ..+.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999742110                  11122223333334444444  678999999998888


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      ..+...++.+|++++|+|+.+...-.. ...+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888999999999999999987643222 223333333   3489999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.64  E-value=9.5e-15  Score=102.66  Aligned_cols=106  Identities=26%  Similarity=0.326  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhhhc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITSSYYR   83 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   83 (222)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+..++.  .+.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998543 2333344444445556666764  457999999532         1112334448


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK  126 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  126 (222)
                      .+|++++|+|.+++.. +....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999887432 22233334442    45899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN03126 Elongation factor Tu; Provisional

Probab=99.64  E-value=1.1e-14  Score=125.01  Aligned_cols=147  Identities=18%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC----------------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF----------------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ....++|+++|++++|||||+++|+....                ........+.+.....+..  ....+.++|+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCHH
Confidence            34578999999999999999999985211                1111222233333333333  33578999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHc-
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETE-  147 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-  147 (222)
                      .|.......+..+|++++|+|+.++..-. ...++..+...   ++| +++++||+|+.+......   .+...+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98777777788999999999998764322 23344444333   377 678899999875222111   1223333332 


Q ss_pred             ----CCeEEEEccccCCC
Q 027503          148 ----GLYFMETSAMQNLN  161 (222)
Q Consensus       148 ----~~~~~~~Sa~~~~g  161 (222)
                          +++++.+|+.+|.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999998853

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.64  E-value=3.8e-15  Score=128.14  Aligned_cols=151  Identities=23%  Similarity=0.223  Sum_probs=95.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CCCcceeeEEEEEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------------------------------KPTIGVEFAYRNIRV   56 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   56 (222)
                      ...++|+++|+.++|||||+.+|+...-....                                 ....+++.....+  
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~--  102 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF--  102 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence            45799999999999999999998743211000                                 1112233333333  


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503           57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN  136 (222)
Q Consensus        57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (222)
                      ......+.|+||||++.|.......+..+|++++|+|++.+..-.. ...+..+.... . .|++|++||+|+.+.....
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg-~-~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG-I-KHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC-C-CceEEEEEeeccccchhHH
Confidence            3334578999999998886655666799999999999987532111 11112222222 1 4788899999987422211


Q ss_pred             HHH----HHHHHHHc----CCeEEEEccccCCCHHHH
Q 027503          137 EEE----GKILAETE----GLYFMETSAMQNLNVEDA  165 (222)
Q Consensus       137 ~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~  165 (222)
                      .+.    ...+....    ..+++++||++|.|+.+.
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            111    11222222    367999999999999764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=1.9e-14  Score=110.40  Aligned_cols=159  Identities=17%  Similarity=0.154  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCC--CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------h---hhH
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDS--KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------A---ITS   79 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~---~~~   79 (222)
                      ++|+|+|.+|||||||+|.+++.......  .+..+..........++  ..+.++||||.....        .   ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654333  22333444444444554  478999999954321        1   112


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCeE
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVN------EEEGKILAETEGLYF  151 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~  151 (222)
                      ....++|++++|+++++ .+-.+ ...+..+....+  .-.++++|+|+.|......+.      ....+......+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999987 33222 223333433322  114788899999976433211      123344445555555


Q ss_pred             EEEcc-----ccCCCHHHHHHHHHHHHHH
Q 027503          152 METSA-----MQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       152 ~~~Sa-----~~~~gi~~~~~~l~~~i~~  175 (222)
                      +..+.     ..+.++.++++.+.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            55553     4566777777766666554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13351 elongation factor G; Reviewed

Probab=99.63  E-value=6.4e-15  Score=132.59  Aligned_cols=120  Identities=17%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC--------CC-----CCC---CcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR--------LD-----SKP---TIGVEFAYRNIRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~--------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   71 (222)
                      +.+...+|+|+|+.++|||||+++|+...-.        ..     +.+   ..+.+.......+......+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            4456789999999999999999999853210        00     000   0111222222223333468999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      ..+...+..+++.+|++++|+|++++........| ..+..   .++|+++|+||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99888899999999999999999987665554434 33332   3589999999999864

>PLN03127 Elongation factor Tu; Provisional

Probab=99.63  E-value=1.5e-14  Score=123.53  Aligned_cols=156  Identities=17%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC------cC----------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD------EF----------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      ...++|+++|+.++|||||+++|.+.      ..          .+...+..+.+  .....++.....+.++||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence            45789999999999999999999632      10          01112333333  33444444446789999999988


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCCHH---HHHHHHHHc--
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVNEE---EGKILAETE--  147 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~---~~~~~~~~~--  147 (222)
                      |.......+..+|++++|+|++++..-+ ....+..+...   ++|. ++++||+|+.+.......   +...+....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7666666667899999999998753222 22233333333   3784 678999999753221111   112222221  


Q ss_pred             ---CCeEEEEccc---cCCC-------HHHHHHHHHH
Q 027503          148 ---GLYFMETSAM---QNLN-------VEDAFLQMIN  171 (222)
Q Consensus       148 ---~~~~~~~Sa~---~~~g-------i~~~~~~l~~  171 (222)
                         .++++.+|+.   +|.|       +.++++.+..
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~  249 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE  249 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence               3678888876   4544       4555555444

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.63  E-value=1.5e-14  Score=115.09  Aligned_cols=163  Identities=20%  Similarity=0.176  Sum_probs=118.0

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAI   77 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~   77 (222)
                      |+-.++....++++|.|++|||||++.|.+........+..+.+.....+.+.+  ..+++.|+||.-.-       ...
T Consensus        56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~  133 (365)
T COG1163          56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQ  133 (365)
T ss_pred             ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcce
Confidence            445677889999999999999999999999876666667777777777777777  78899999984321       234


Q ss_pred             hHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHH-----------------------------------------HHHc-
Q 027503           78 TSSYYRGALGALLVYDITRRAT-FENTKKWLREL-----------------------------------------REFC-  114 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~~~-  114 (222)
                      .....++||++++|+|+....+ .+-+...+...                                         .++. 
T Consensus       134 vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I  213 (365)
T COG1163         134 VLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRI  213 (365)
T ss_pred             eeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCc
Confidence            5677899999999999996654 33333322221                                         0000 


Q ss_pred             ---------------------C--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503          115 ---------------------S--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       115 ---------------------~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                                           .  .=+|.++|.||+|+..     .++...+.+..  .++.+||..+.|++++.+.|-+
T Consensus       214 ~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~  286 (365)
T COG1163         214 HNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD  286 (365)
T ss_pred             ccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence                                 0  0159999999999865     23333444333  7899999999999999988887


Q ss_pred             HHHHh
Q 027503          172 QIHQT  176 (222)
Q Consensus       172 ~i~~~  176 (222)
                      .+.-.
T Consensus       287 ~L~li  291 (365)
T COG1163         287 VLGLI  291 (365)
T ss_pred             hhCeE
Confidence            76543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.63  E-value=5.4e-15  Score=115.25  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhhcCCcE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYYRGALG   87 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~   87 (222)
                      ||+++|+.+|||||+.+.++++-.+... .-..+.+.....+...+. +.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999999876543222 112233444445544332 5899999999875443     45778899999


Q ss_pred             EEEEEeCCChhhHHHHH---HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--C----HHHHHHHHHHcC---CeEEEEc
Q 027503           88 ALLVYDITRRATFENTK---KWLRELREFCSSCMAIVLVGNKSDLTHSREV--N----EEEGKILAETEG---LYFMETS  155 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~----~~~~~~~~~~~~---~~~~~~S  155 (222)
                      +|+|+|+.+.+-.+++.   ..+..+.++.+ ++.+.|+++|+|+..+...  .    .+.....+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999999544334444   34444555554 4889999999998642111  0    111222233444   7899999


Q ss_pred             cccCCCHHHHHHHHHHHHHHh
Q 027503          156 AMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ..+. .+-+.|..+++.+...
T Consensus       159 I~D~-Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  159 IWDE-SLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             TTST-HHHHHHHHHHHTTSTT
T ss_pred             CcCc-HHHHHHHHHHHHHccc
Confidence            9994 7889998888887754

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.62  E-value=1.1e-14  Score=124.45  Aligned_cols=151  Identities=17%  Similarity=0.080  Sum_probs=96.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC--C-----------------------------CCCCCCcceeeEEEEEEEC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF--R-----------------------------LDSKPTIGVEFAYRNIRVG   57 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   57 (222)
                      ....++|+++|+.++|||||+.+|+...-  .                             .....  +.+.......+.
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence            35678999999999999999999875210  0                             00112  223333333444


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCCC
Q 027503           58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---F---ENTKKWLRELREFCSSCMA-IVLVGNKSDLT  130 (222)
Q Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~  130 (222)
                      .....+.|+|+||+..|.......+..+|++++|+|++.+.-   +   ......+..+...   ++| ++|++||+|..
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK  158 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence            455788999999999998878888899999999999987531   1   1222223333333   365 56899999953


Q ss_pred             C--CCCCCH----HHHHHHHHHc-----CCeEEEEccccCCCHHH
Q 027503          131 H--SREVNE----EEGKILAETE-----GLYFMETSAMQNLNVED  164 (222)
Q Consensus       131 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  164 (222)
                      .  ...-..    .+...+....     .++++++|+.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  111111    1222222222     36799999999999864

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.3e-14  Score=116.20  Aligned_cols=164  Identities=21%  Similarity=0.179  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcCCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRGAL   86 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d   86 (222)
                      -|.++|.|++|||||++.+....--....|.++..-....+... ....|.+-|.||.-+       ...-....+.++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            47799999999999999999876544444555555555555552 234689999999542       1122345567889


Q ss_pred             EEEEEEeCCChh---hHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE-EccccCC
Q 027503           87 GALLVYDITRRA---TFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFME-TSAMQNL  160 (222)
Q Consensus        87 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~  160 (222)
                      +++.|+|++..+   ..++......++..+..  ...|.+||+||+|+....+...+....+....+...+. +|+.+++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999998644   34555555566655542  45899999999997654443344455555555544222 9999999


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q 027503          161 NVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~  178 (222)
                      |++++...+.+.+.+...
T Consensus       320 g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         320 GLDELLRALAELLEETKA  337 (369)
T ss_pred             CHHHHHHHHHHHHHHhhh
Confidence            999999888888777653

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=1.7e-14  Score=117.83  Aligned_cols=81  Identities=15%  Similarity=0.225  Sum_probs=55.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE---------------------ECC-eEEEEEEEeCCCh-
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR---------------------VGD-KLIKAQIWDTAGQ-   71 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~Dt~G~-   71 (222)
                      |+++|.++||||||+++|.+........|..+.+.......                     .++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999998875433333333332222111                     122 3467999999997 


Q ss_pred             ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 027503           72 ---ERFRAITSS---YYRGALGALLVYDIT   95 (222)
Q Consensus        72 ---~~~~~~~~~---~~~~~d~~i~v~d~~   95 (222)
                         ++...+...   .++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334444334   589999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.62  E-value=8.9e-15  Score=124.79  Aligned_cols=164  Identities=18%  Similarity=0.193  Sum_probs=103.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEE---------------EECC-----------
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNI---------------RVGD-----------   58 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   58 (222)
                      .....++|+++|+...|||||+.+|.+...   ........+.+..+...               ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346788999999999999999999986432   11112222222111110               0000           


Q ss_pred             -----eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           59 -----KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        59 -----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                           ....+.|+|+||++.|-......+..+|++++|+|++++.........+..+... .. .|++||+||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi-~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KL-KHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CC-CcEEEEEecccccCHH
Confidence                 0236899999999988777777788999999999999742111222222222222 22 4688999999997532


Q ss_pred             CCC--HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          134 EVN--EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       134 ~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ...  .++.+.+...   .+.+++++||.+|.|++++++.|.+.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            211  1122222222   357899999999999999998887644

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=2.9e-14  Score=120.10  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=117.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++++-|-|+|+..-|||||+..|-+..+...-.-.++..+.-..+.+... ..++|.||||+..|..|+..-..-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            46788999999999999999999887765443344444443334444422 57899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HcC--CeEEEEccccCCC
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE------TEG--LYFMETSAMQNLN  161 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~g  161 (222)
                      +|+.++|+--    .+..+.|......++|++|.+||+|.++..  +....+++..      .+|  +.++++||++|.|
T Consensus       230 LVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  230 LVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            9999998632    223444666666779999999999976432  2222333322      233  6799999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027503          162 VEDAFLQMINQIHQT  176 (222)
Q Consensus       162 i~~~~~~l~~~i~~~  176 (222)
                      ++.+-+.+.-...-+
T Consensus       304 l~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  304 LDLLEEAILLLAEVM  318 (683)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            999887776655433

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.60  E-value=1.8e-14  Score=128.45  Aligned_cols=151  Identities=22%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CCCcceeeEEEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------------------------------KPTIGVEFAYRNIR   55 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~   55 (222)
                      ....++|+++|++++|||||+++|+...-....                                 ....+.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999864321110                                 01122222223333


Q ss_pred             ECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           56 VGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+  ...+.|+||||++.|.......+..+|++++|+|++.+..-.. ...+..+.... . .|++|++||+|+.+....
T Consensus       101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~-~-~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG-I-RHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC-C-CeEEEEEEecccccchhH
Confidence            33  3578899999998876656667889999999999987532221 12222222222 1 578889999998642211


Q ss_pred             CHH----HHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503          136 NEE----EGKILAETEG---LYFMETSAMQNLNVED  164 (222)
Q Consensus       136 ~~~----~~~~~~~~~~---~~~~~~Sa~~~~gi~~  164 (222)
                      ..+    +...+....+   ++++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    1222333444   4699999999999874

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=8.4e-14  Score=125.24  Aligned_cols=118  Identities=16%  Similarity=0.105  Sum_probs=83.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL------------------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+|+|++++|||||+++|+...-..                  ...+..+.+.....+..++  ..+.++|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence            34567899999999999999999997421100                  0122334444444455544  678999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |+..+...+...+..+|++++|+|+.++...... ..+..+..   .++|+++++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9988888888899999999999999886543332 22233333   3489999999999864

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.7e-14  Score=120.27  Aligned_cols=171  Identities=22%  Similarity=0.215  Sum_probs=112.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hh----h----hhH
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FR----A----ITS   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~----~----~~~   79 (222)
                      ...++|+|+|.||+|||||+|.|...+..... .+..+.+.-...++++|  +.+.|.||+|..+ -.    .    -..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            34589999999999999999999988765443 45555566666677777  6789999999654 11    1    123


Q ss_pred             hhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHH------HcCCCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHHc---
Q 027503           80 SYYRGALGALLVYDITRRATF--ENTKKWLRELRE------FCSSCMAIVLVGNKSDLTHS-REVNEEEGKILAETE---  147 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~------~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---  147 (222)
                      ..+..+|++++|+|+.....-  ..+...+.....      ......|++++.||+|+... ....... ..+....   
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~  422 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS  422 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence            457799999999999543222  222223332211      11244789999999999764 1221111 1111111   


Q ss_pred             CCe-EEEEccccCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503          148 GLY-FMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC  183 (222)
Q Consensus       148 ~~~-~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~  183 (222)
                      ..+ ..++|+++++|+.++.+.+...+..........
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~  459 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSA  459 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCC
Confidence            134 455999999999999999999888777644443

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=4.3e-14  Score=119.07  Aligned_cols=159  Identities=21%  Similarity=0.220  Sum_probs=112.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC--C-------------CCCCCCcceeeEEEE-EEECCeEEEEEEEeCCChhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEF--R-------------LDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~--~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      +..-++.|+-+..-|||||..+|+...-  +             ......+++...... +..++....+.++||||+..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5667899999999999999999874221  1             111222333322222 22246668899999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHcCCe
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG---KILAETEGLY  150 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~  150 (222)
                      |..-...-+..++++|+|+|+..+..-+.+..++..+.    .+..+|.|+||+|+...+.  +...   .........+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adp--e~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADP--ERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCH--HHHHHHHHHHhcCCccc
Confidence            99888889999999999999998765555544444333    2367899999999976432  2222   2333334457


Q ss_pred             EEEEccccCCCHHHHHHHHHHHHH
Q 027503          151 FMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .+.+||++|.|+.++++++++++=
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhCC
Confidence            999999999999999999988763

>PRK09866 hypothetical protein; Provisional

Probab=99.56  E-value=3.1e-13  Score=117.02  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             EEEEEeCCChhh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503           62 KAQIWDTAGQER-----FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN  136 (222)
Q Consensus        62 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (222)
                      .+.|+||||...     ........+..+|++++|+|+....+..+ ......+....+ ..|+++|+||+|+.+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCCcccch
Confidence            578999999653     23334457999999999999987544433 223344443322 25999999999986433322


Q ss_pred             HHHHHHHHH----HcC---CeEEEEccccCCCHHHHHHHHHH
Q 027503          137 EEEGKILAE----TEG---LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       137 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      .+....+..    ..+   ..++++||+.|.|+.++++.+..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            344444432    112   35999999999999999988876

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.55  E-value=4.8e-14  Score=117.66  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=129.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-----hh----hhhHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-----FR----AITSSY   81 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~----~~~~~~   81 (222)
                      ..-.++|+|.|++|||||+|.+..........++++...+..++.+..  ..++++||||.-.     .+    ......
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            445689999999999999999998887777667776666666666543  6889999999321     11    111223


Q ss_pred             hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEcc
Q 027503           82 YRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK---ILAETEGLYFMETSA  156 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa  156 (222)
                      .+--.+|+|+.|++.  +.|..+-..+++.+...... .|+|+|+||+|+.....++.+...   .....-+++++++|+
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN-K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN-KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC-CceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            333456788888875  56777777788888888766 799999999999887777665533   334445589999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 027503          157 MQNLNVEDAFLQMINQIHQTTIQKSLCA  184 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i~~~~~~~~~~~  184 (222)
                      .+.+|+.++-...+++++..+......+
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             cchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887766654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.54  E-value=2.4e-13  Score=122.33  Aligned_cols=118  Identities=18%  Similarity=0.104  Sum_probs=83.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC-------------CCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-----DS-------------KPTIGVEFAYRNIRVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+|+|++++|||||+++|+...-..     ..             ....+.+.....+..++  ..+.+||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP   83 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP   83 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence            44567799999999999999999997422110     00             12233333344444444  688999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |+..+...+...+..+|++++|+|+.++....... ++..+..   .++|+++++||+|+..
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            99888778888999999999999999865544333 3333333   3489999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.54  E-value=1.3e-14  Score=108.56  Aligned_cols=116  Identities=21%  Similarity=0.315  Sum_probs=71.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHh---hhcCCcE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSS---YYRGALG   87 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~   87 (222)
                      .-.|+|+|+.|||||+|+..|..+....+... ...+.   .+.+ ......+.++|+||+.+.+.....   ++..+-+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS-~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS-MENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc-ccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            45699999999999999999999855333211 11111   1111 223347899999999987653333   4889999


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHH-HHH--cCCCCeEEEEEeCCCCCC
Q 027503           88 ALLVYDITR-RATFENTKKWLREL-REF--CSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        88 ~i~v~d~~~-~~s~~~~~~~~~~l-~~~--~~~~~p~ivv~nK~Dl~~  131 (222)
                      +|||+|.+. .....++..++..+ ...  ...++|++|+.||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999974 33455555544443 222  246799999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.54  E-value=1.5e-13  Score=119.46  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CCCcceeeEEEEEEECCeEEEEEEE
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------------KPTIGVEFAYRNIRVGDKLIKAQIW   66 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~   66 (222)
                      .+.....+|+|+|++++|||||+++|+...-....                    ....+.++......++.....+.+|
T Consensus         6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli   85 (527)
T TIGR00503         6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL   85 (527)
T ss_pred             hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence            34456789999999999999999998631110000                    0112334444444555555789999


Q ss_pred             eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      ||||+..|.......+..+|++|+|+|+.+... .....++..+..   .++|+++++||+|+..
T Consensus        86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            999998887777778899999999999987522 223344443332   3489999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.52  E-value=6e-13  Score=111.92  Aligned_cols=83  Identities=18%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR---------------------VG-DKLIKAQIWDTAG   70 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~Dt~G   70 (222)
                      ++|+|+|.|+||||||+|+|.+........+..+.+.......                     .+ .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998876543334443333322211                     11 2236789999999


Q ss_pred             hh----hhhhhhHhh---hcCCcEEEEEEeCC
Q 027503           71 QE----RFRAITSSY---YRGALGALLVYDIT   95 (222)
Q Consensus        71 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   95 (222)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            43    223333344   88999999999996

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=4.5e-13  Score=111.39  Aligned_cols=160  Identities=20%  Similarity=0.217  Sum_probs=115.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC---------------CCCCCCCcceeeEEEEEEE---CCeEEEEEEEeCCC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF---------------RLDSKPTIGVEFAYRNIRV---GDKLIKAQIWDTAG   70 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G   70 (222)
                      ....-+..++-+-.-|||||..+|+...-               .......+++......+.+   +|..+.+.++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34556789999999999999999874321               1111233333333322222   45778999999999


Q ss_pred             hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503           71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY  150 (222)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (222)
                      +..|.--....+..+.+.++|+|++.+-..+.+...+..+..    +.-++-|+||+||+...  ......+...-.|++
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid  159 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGID  159 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHHHHHHHhCCC
Confidence            998887777888889999999999987655565555554443    36678889999997533  345566667777764


Q ss_pred             ---EEEEccccCCCHHHHHHHHHHHHH
Q 027503          151 ---FMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       151 ---~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                         .+.+||++|.||.++++.+++++=
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCC
Confidence               789999999999999999988753

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.5e-13  Score=94.63  Aligned_cols=136  Identities=21%  Similarity=0.199  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhhhcCCcEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSYYRGALGAL   89 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i   89 (222)
                      ||+++|..|+|||||.+.|.+...  .+..|..++       +++.    -.+||||.-    .+.........++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            799999999999999999987653  223333222       2221    268999943    22223445567899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|-+++++++-...     .+....  ..|+|-|++|+|+.+..  ..+..+.|..+-|. ++|++|+.++.|+.++++.
T Consensus        70 ~v~~and~~s~f~p-----~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPP-----GFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCc-----cccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999998653221     111111  15689999999998633  34667788888885 5999999999999999988


Q ss_pred             HHH
Q 027503          169 MIN  171 (222)
Q Consensus       169 l~~  171 (222)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=3.4e-13  Score=110.69  Aligned_cols=154  Identities=22%  Similarity=0.195  Sum_probs=101.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CC---------------CC------------CCCCcceeeEEEEEEECCeE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR---------------LD------------SKPTIGVEFAYRNIRVGDKL   60 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~---------------~~------------~~~~~~~~~~~~~~~~~~~~   60 (222)
                      ...++++++|+..+|||||+-+|+-..  ++               ..            -....+.+.......++...
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            356899999999999999999986311  00               00            01123455555556666666


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      ..|+|+|+||+..|-.....-...||+.|+|+|+.+.+   .|  ....+....+.+...- ..++|++||+|..+.++-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-~~lIVavNKMD~v~wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-KQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC-ceEEEEEEcccccccCHH
Confidence            78999999999888887888888999999999999874   11  1112222333333332 457888999999873332


Q ss_pred             CHHHHH----HHHHHcC-----CeEEEEccccCCCHHH
Q 027503          136 NEEEGK----ILAETEG-----LYFMETSAMQNLNVED  164 (222)
Q Consensus       136 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~gi~~  164 (222)
                      ..++..    .+....|     ++|+++|+..|.|+.+
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            222221    2333333     6799999999999765

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.48  E-value=2.8e-12  Score=102.19  Aligned_cols=162  Identities=19%  Similarity=0.313  Sum_probs=119.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhhhcCC----
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK--LIKAQIWDTAGQERFRAITSSYYRGA----   85 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~----   85 (222)
                      .-+|+++|+.++|||||+.+|-+.+   ...+..+.++.+.++..++.  ..++.+|-..|.-.+..+....+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            4579999999999999999998765   45566667776665554332  34677888888766666655555433    


Q ss_pred             cEEEEEEeCCChh-hHHHHHHHHHHHHHH---------------------------------------------------
Q 027503           86 LGALLVYDITRRA-TFENTKKWLRELREF---------------------------------------------------  113 (222)
Q Consensus        86 d~~i~v~d~~~~~-s~~~~~~~~~~l~~~---------------------------------------------------  113 (222)
                      -.+|++.|+++|. -++.+..|...+.++                                                   
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            3688899999995 446678887766441                                                   


Q ss_pred             ----------cCCCCeEEEEEeCCCCC----CCCCCCH-------HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          114 ----------CSSCMAIVLVGNKSDLT----HSREVNE-------EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       114 ----------~~~~~p~ivv~nK~Dl~----~~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                                ...++|++||.+|+|..    .+.++.+       ...+.|+..+|..++.+|++...+++-+..+|+++
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                      11368999999999983    2222222       23578888999999999999999999999999999


Q ss_pred             HHHh
Q 027503          173 IHQT  176 (222)
Q Consensus       173 i~~~  176 (222)
                      .+..
T Consensus       289 ~yG~  292 (473)
T KOG3905|consen  289 SYGF  292 (473)
T ss_pred             hcCc
Confidence            8754

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=1.6e-12  Score=116.95  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             EcCCCCChHHHHHHHhhCcCCCC------------------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503           18 IGDSAVGKSNLLSRFARDEFRLD------------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS   79 (222)
Q Consensus        18 lG~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   79 (222)
                      +|++++|||||+++|+...-...                  .....++......+...+  ..+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            69999999999999964321100                  012223333334444444  6899999999988877788


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      ..+..+|++++|+|++..........| ..+..   .++|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            889999999999999987655443333 23322   3589999999999863

>PRK00007 elongation factor G; Reviewed

Probab=99.47  E-value=1.1e-12  Score=118.15  Aligned_cols=144  Identities=16%  Similarity=0.074  Sum_probs=92.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---C-------------CCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF--RL---D-------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+|+|++++|||||+++|+...-  ..   .             ..+..+.+.....+...+  ..+.++|||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP   83 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP   83 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence            455678999999999999999999974111  00   0             122233333334444444  688999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL  149 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (222)
                      |+..+.......+..+|++++|+|+..+....... .+..+..   .++|.++++||+|+.+..  .......+....+.
T Consensus        84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~  157 (693)
T PRK00007         84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGA  157 (693)
T ss_pred             CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCC
Confidence            98887766777889999999999998764434322 2233333   348899999999987533  22233333333332


Q ss_pred             ----eEEEEccccC
Q 027503          150 ----YFMETSAMQN  159 (222)
Q Consensus       150 ----~~~~~Sa~~~  159 (222)
                          ..+++|+..+
T Consensus       158 ~~~~~~ipisa~~~  171 (693)
T PRK00007        158 NPVPIQLPIGAEDD  171 (693)
T ss_pred             CeeeEEecCccCCc
Confidence                2455555544

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.44  E-value=1.8e-12  Score=100.68  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--CCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhh---H
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK--PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAIT---S   79 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~   79 (222)
                      ++|+|+|.+||||||++|.+++........  ...+..........++  ..+.++||||....        ..+.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987654432  2333444455556777  56799999993211        1111   1


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH-------HHHHHHHHHcCCe
Q 027503           80 SYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE-------EEGKILAETEGLY  150 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~  150 (222)
                      ...++.|++++|+.++ ..+..+  +..++..+....-. ..++||.|..|......+..       ...+.+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH-hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2346789999999998 333222  22233322221112 35788889888655433211       1234455556667


Q ss_pred             EEEEccc------cCCCHHHHHHHHHHHHHHhh
Q 027503          151 FMETSAM------QNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       151 ~~~~Sa~------~~~gi~~~~~~l~~~i~~~~  177 (222)
                      |+..+.+      ....+.++++.+-+.+.+..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8777766      33456777766666555543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.44  E-value=8.7e-13  Score=102.81  Aligned_cols=168  Identities=17%  Similarity=0.210  Sum_probs=95.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEE--------EEEEE-----------------------
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY--------RNIRV-----------------------   56 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--------~~~~~-----------------------   56 (222)
                      ...+++-|+++|..|||||||+++|..........|.. ++...        .++++                       
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv-iNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV-INLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE-EeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            34567889999999999999999997644322221110 00000        00000                       


Q ss_pred             ------------------CCeEEEEEEEeCCChhhh------hhhhHhhhcCC--cEEEEEEeCCC---hhhHHHHHHHH
Q 027503           57 ------------------GDKLIKAQIWDTAGQERF------RAITSSYYRGA--LGALLVYDITR---RATFENTKKWL  107 (222)
Q Consensus        57 ------------------~~~~~~~~l~Dt~G~~~~------~~~~~~~~~~~--d~~i~v~d~~~---~~s~~~~~~~~  107 (222)
                                        ....+...++||||+.+.      ..+....+...  -++++++|...   +.+|-.  ..+
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMl  171 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NML  171 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHH
Confidence                              022256789999997642      22333444433  45556666432   333322  112


Q ss_pred             HHHHHHcCCCCeEEEEEeCCCCCCCC----CCCHHHHHHHHHH----------------------cCCeEEEEccccCCC
Q 027503          108 RELREFCSSCMAIVLVGNKSDLTHSR----EVNEEEGKILAET----------------------EGLYFMETSAMQNLN  161 (222)
Q Consensus       108 ~~l~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~Sa~~~~g  161 (222)
                      ....-....+.|+|++.||+|+.+..    .+.+.+..+-+..                      .++..+-+|+.+|.|
T Consensus       172 YAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  172 YACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            22222234459999999999997631    1222221111111                      236788999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 027503          162 VEDAFLQMINQIHQTTI  178 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~~  178 (222)
                      .+++|..+-+.+.+...
T Consensus       252 ~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  252 FDDFFTAVDESVDEYEE  268 (366)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988887766543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.43  E-value=3e-12  Score=101.40  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--h--------
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--A--------   76 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~--------   76 (222)
                      .-...++|+|+|.+|||||||+|+|++....... ....+..........++  ..+.+|||||.....  .        
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            4467899999999999999999999997654332 22223333333344444  578999999965331  0        


Q ss_pred             hhHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCCC
Q 027503           77 ITSSYYR--GALGALLVYDITRRA-TFENTKKWLRELREFCSSC--MAIVLVGNKSDLTH  131 (222)
Q Consensus        77 ~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~  131 (222)
                      ....++.  ..|++++|..++... ...+ ...++.+....+..  .++++|.||+|...
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            1222333  578888888776532 2222 22333343332211  46899999999864

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd00066 G-alpha G protein alpha subunit

Probab=99.43  E-value=7.5e-12  Score=102.76  Aligned_cols=118  Identities=18%  Similarity=0.193  Sum_probs=84.1

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR----------ATFENTKKWLRELREFC-SSCMAIVLVGNKSD  128 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D  128 (222)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+.... -.+.|++|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46789999999999999999999999999999999873          23333333333332222 24589999999999


Q ss_pred             CCCC---------------C-CCCHHHHHHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          129 LTHS---------------R-EVNEEEGKILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       129 l~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +..+               . ..+.+.+..+...          +.+..+.++|.+..+++.+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            6421               1 2234444444322          2356778999999999999999888887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.43  E-value=8e-13  Score=119.34  Aligned_cols=120  Identities=16%  Similarity=0.093  Sum_probs=81.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc---------------CCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDE---------------FRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+|+|+.++|||||+++|+...               +...   +..|.........+.+++....+.+||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            34567899999999999999999997521               1000   01111111222223456666889999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |+..|.......+..+|++++|+|+.++........|. .+.   ..+.|.++++||+|...
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence            99988888888999999999999998753323222222 222   23478889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.42  E-value=8.7e-12  Score=100.53  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-------hhH
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-------ITS   79 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~   79 (222)
                      +....++|+|+|.+|+||||++|+|++....... ....+..........++  ..+.++||||......       ...
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence            3467899999999999999999999987653222 12222222222233344  6789999999664321       112


Q ss_pred             hhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCC
Q 027503           80 SYY--RGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        80 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~  134 (222)
                      .++  ...|++++|..++.......-...+..+....+  --.+++||+|+.|......
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~  170 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG  170 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC
Confidence            222  268999999766532111111223333333321  1146899999999764333

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.42  E-value=5.6e-12  Score=116.03  Aligned_cols=143  Identities=20%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             CChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE----------------EEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503           23 VGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL----------------IKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus        23 sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ++||||+.++.+..+...-...++..+....+..+...                -.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            34999999999877654444444444433333332110                13799999999999888888888999


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH------------HH-HHHH-------
Q 027503           87 GALLVYDITRR---ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE------------EE-GKIL-------  143 (222)
Q Consensus        87 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~------------~~-~~~~-------  143 (222)
                      ++++|+|++++   .+++.+.    .+..   .++|+++|+||+|+........            +. ..++       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999873   3443332    2222   2489999999999864222100            00 1111       


Q ss_pred             ---HHH---------------cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          144 ---AET---------------EGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       144 ---~~~---------------~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                         ...               ..++++++||++|+|+++++..+...
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence               011               13689999999999999999776543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.41  E-value=8.4e-12  Score=106.54  Aligned_cols=165  Identities=21%  Similarity=0.366  Sum_probs=119.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC--eEEEEEEEeCCChhhhhhhhHhhhcCC--
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD--KLIKAQIWDTAGQERFRAITSSYYRGA--   85 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~--   85 (222)
                      ...-.|+|+|..++|||||+.+|.+.+   ...++.+.++.+..+..++  ...++.+|-..|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345689999999999999999987644   4456777888776655542  234789999988666666665555432  


Q ss_pred             --cEEEEEEeCCChhhH-HHHHHHHHHHHH-------------------------Hc-----------------------
Q 027503           86 --LGALLVYDITRRATF-ENTKKWLRELRE-------------------------FC-----------------------  114 (222)
Q Consensus        86 --d~~i~v~d~~~~~s~-~~~~~~~~~l~~-------------------------~~-----------------------  114 (222)
                        -++++|+|.+.|..+ +.+..|+..++.                         +.                       
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              368889999999755 456667655433                         00                       


Q ss_pred             --------------CCCCeEEEEEeCCCCCC----CCCCC-------HHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503          115 --------------SSCMAIVLVGNKSDLTH----SREVN-------EEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus       115 --------------~~~~p~ivv~nK~Dl~~----~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                                    ..++|++||.+|+|...    +....       ....+.++..+|+.++++|++...+++-++.+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                          01479999999999742    11121       223567788899999999999999999999999


Q ss_pred             HHHHHHhh
Q 027503          170 INQIHQTT  177 (222)
Q Consensus       170 ~~~i~~~~  177 (222)
                      .++++...
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            99987653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.41  E-value=5e-12  Score=101.77  Aligned_cols=150  Identities=24%  Similarity=0.241  Sum_probs=101.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC---------------------------------CCCCCCcceeeEEEEEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR---------------------------------LDSKPTIGVEFAYRNIRV   56 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~   56 (222)
                      ...+|++.+|+..=||||||-+|+...-.                                 ......++++..++.+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45789999999999999999998743210                                 011222344444444443


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503           57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN  136 (222)
Q Consensus        57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (222)
                        .+.+|.+-||||+++|-.....-..-+|++|+++|+-.+  ..+-.+-...+....+- ..++|.+||+||.+..+-.
T Consensus        84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence              446899999999999988777777889999999999543  22222222334444333 4677889999998754322


Q ss_pred             H----HHHHHHHHHcCC---eEEEEccccCCCHHH
Q 027503          137 E----EEGKILAETEGL---YFMETSAMQNLNVED  164 (222)
Q Consensus       137 ~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~  164 (222)
                      .    .+...|+..+++   .++++||..|+|+-.
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            2    233567777774   599999999998753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.40  E-value=1.4e-12  Score=103.22  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY  150 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (222)
                      +++..+.+.++.++|++++|+|+.++. ++..+..|+..+..   .++|+++|+||+||.+......+....+. ..+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            567778888999999999999999887 89999999876654   34899999999999764444334444444 47889


Q ss_pred             EEEEccccCCCHHHHHHHHHH
Q 027503          151 FMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ++++||++|.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.39  E-value=1.4e-11  Score=102.75  Aligned_cols=86  Identities=20%  Similarity=0.200  Sum_probs=62.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCChhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL---------------IKAQIWDTAGQER   73 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~   73 (222)
                      ....++|+|+|.||||||||+|+|.+........|..+.+.....+.+.+..               ..+.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            3567899999999999999999998877655555666666555555544322               3589999999542


Q ss_pred             -------hhhhhHhhhcCCcEEEEEEeC
Q 027503           74 -------FRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        74 -------~~~~~~~~~~~~d~~i~v~d~   94 (222)
                             ........++.+|++++|+|.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence                   112233456789999999997

>PRK13768 GTPase; Provisional

Probab=99.39  E-value=3.4e-12  Score=101.59  Aligned_cols=109  Identities=18%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             EEEEEeCCChhhh---hhhhHhhhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           62 KAQIWDTAGQERF---RAITSSYYR---G--ALGALLVYDITRRATFENT--KKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        62 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      .+.+||+||+.+.   +..+..+++   .  ++++++|+|+.......+.  ..|+...... ..++|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6889999997653   333333333   2  8999999999765433222  2233222222 23589999999999875


Q ss_pred             CCCCCHHHHHH----------------------------HHHHcC--CeEEEEccccCCCHHHHHHHHHHHH
Q 027503          132 SREVNEEEGKI----------------------------LAETEG--LYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       132 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ....  +....                            .....+  .+++++|++++.|++++++++.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            4322  11111                            111223  5789999999999999999987765

>TIGR00101 ureG urease accessory protein UreG

Probab=99.39  E-value=5.2e-12  Score=96.96  Aligned_cols=102  Identities=14%  Similarity=0.025  Sum_probs=63.5

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      ....++++.|..-..... ..  -+|.+|.|+|+.+..+...  .+...+.      ..=++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            355677887732111111 11  2578999999987655321  1111121      12278899999975322233333


Q ss_pred             HHHHHH--cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          141 KILAET--EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       141 ~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+....  .+.+++++|+++|.|+.++|+++.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444333  457899999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=4.9e-12  Score=95.14  Aligned_cols=154  Identities=18%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc---CCcE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR---GALG   87 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~   87 (222)
                      +.-.|+++|+.+||||+|+-+|..+.+......   .+.....+.++..  .++++|.||+.+.+.-...+++   .+-+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence            345699999999999999999988755333211   1112223333332  3799999999988876666666   7889


Q ss_pred             EEEEEeCCCh-hhHHHHHHHH-HHHHHH--cCCCCeEEEEEeCCCCCCCCCCCHHHHH----------------------
Q 027503           88 ALLVYDITRR-ATFENTKKWL-RELREF--CSSCMAIVLVGNKSDLTHSREVNEEEGK----------------------  141 (222)
Q Consensus        88 ~i~v~d~~~~-~s~~~~~~~~-~~l~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----------------------  141 (222)
                      +++|+|...- ....++..++ ..+...  ..+++|++++-||.|+.....  .+.++                      
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt--~~~Ir~~LEkEi~~lr~sRsa~~~~~~  189 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT--AEKIRQQLEKEIHKLRESRSALRSISD  189 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc--HHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            9999987642 2334444444 334333  357799999999999864221  11100                      


Q ss_pred             ----------------HHHHH--cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          142 ----------------ILAET--EGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       142 ----------------~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                                      .|+..  ..+.|.++|++++ +++++-+|+.+.
T Consensus       190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                            11111  2256888999999 899999888764

>smart00275 G_alpha G protein alpha subunit

Probab=99.36  E-value=5.3e-11  Score=98.61  Aligned_cols=118  Identities=15%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR----------ATFENTKKWLRELREF-CSSCMAIVLVGNKSDL  129 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl  129 (222)
                      ..+.+||.+|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+... .-.+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5789999999999999999999999999999999963          2333333333333322 1245899999999997


Q ss_pred             CCC---------------CCCCHHHHHHHHHH-----------cCCeEEEEccccCCCHHHHHHHHHHHHHHhhh
Q 027503          130 THS---------------REVNEEEGKILAET-----------EGLYFMETSAMQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       130 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      ..+               ...+.+.+..+...           ..+..+.++|.+..++..+|+.+.+.+.....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            421               11223333333221           22557889999999999999998888776543

Subunit of G proteins that contains the guanine nucleotide binding site

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.36  E-value=1e-11  Score=87.69  Aligned_cols=114  Identities=32%  Similarity=0.360  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK-PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777654433 3332                           333344567788999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      ++.++..+++.+  |...+....+.++|.++++||.|+.+...+......        .++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999988765  777776666666889999999998543333333322        34567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.32  E-value=1.1e-12  Score=103.36  Aligned_cols=111  Identities=19%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             EEEEEeCCChhhhhhhhHhhh--------cCCcEEEEEEeCCChhhH-HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           62 KAQIWDTAGQERFRAITSSYY--------RGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      .+.++|||||.++...+....        ...-++++++|.....+. ..+..++..+......+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            678999999988665444333        345578888887643321 12222232222222234999999999999762


Q ss_pred             CC------------C-------CHHHHHHHHHH---cC-C-eEEEEccccCCCHHHHHHHHHHH
Q 027503          133 RE------------V-------NEEEGKILAET---EG-L-YFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       133 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ..            .       ........+..   .+ . .++.+|+.+++|+.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            20            0       00111112222   12 3 79999999999999999655443

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.32  E-value=9.6e-12  Score=114.03  Aligned_cols=119  Identities=17%  Similarity=0.130  Sum_probs=81.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEE--------------C
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRV--------------G   57 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~   57 (222)
                      +.+...+|+|+|+.++|||||+++|+...-....                ....+++.....+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            4567789999999999999999999854321000                111112211122222              1


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +....+.++||||+..|.......+..+|++|+|+|+.++.......-|.. +   ...++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~---~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-H---HHCCCCEEEEEECCccc
Confidence            224678999999999998888888999999999999998754443333322 2   23348999999999986

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=5.6e-11  Score=95.60  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCc----CC---CCCCCCcceeeEEEEEEE-------CCeEEEEEEEeCCChhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDE----FR---LDSKPTIGVEFAYRNIRV-------GDKLIKAQIWDTAGQER   73 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~----~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~   73 (222)
                      ....++++.++|+..||||||.++|..-.    |+   .......+.+.....+..       .+..+.|+++|+||+..
T Consensus         3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas   82 (522)
T KOG0461|consen    3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS   82 (522)
T ss_pred             CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence            34567999999999999999999986421    21   122223333433333222       35567899999999876


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHH----
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN---EEEGKILAET----  146 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~----  146 (222)
                      .-........-.|..++|+|+..+..-+.+.-  ..+.+..  ....+||+||+|...+....   ++.+....+.    
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            54444444455689999999987543222221  1122221  13467888999875432211   1112222221    


Q ss_pred             ---cCCeEEEEccccC----CCHHHHHHHHHHHHHH
Q 027503          147 ---EGLYFMETSAMQN----LNVEDAFLQMINQIHQ  175 (222)
Q Consensus       147 ---~~~~~~~~Sa~~~----~gi~~~~~~l~~~i~~  175 (222)
                         -+.|++++|+.+|    +++.++.+.|.+++.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence               1278999999999    6777777666666654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.31  E-value=1.3e-10  Score=95.96  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCChhh----
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL---------------IKAQIWDTAGQER----   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~----   73 (222)
                      ++|+|+|.|+||||||+|+|.+........|..+.+.....+.+.+..               ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877544445666555555555544421               2589999999542    


Q ss_pred             ---hhhhhHhhhcCCcEEEEEEeCC
Q 027503           74 ---FRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        74 ---~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112334567999999999974

>PTZ00416 elongation factor 2; Provisional

Probab=99.31  E-value=1.2e-11  Score=113.21  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=79.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEEC--------CeEEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVG--------DKLIKAQ   64 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~   64 (222)
                      .+...+|+|+|+.++|||||+++|+...-....                ....++......+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            456679999999999999999999863211100                0111111111122222        1246789


Q ss_pred             EEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           65 IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      ++||||+..|.......+..+|++|+|+|+.++.......-| ..+..   .++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999998887788889999999999999986443332223 33332   348999999999986

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.31  E-value=3.3e-11  Score=93.21  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCcceee------EEEEEEECC-------------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTIGVEF------AYRNIRVGD-------------------   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~------~~~~~~~~~-------------------   58 (222)
                      .....|+|+|..|+|||||+++++........      ......+.      ....+...+                   
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            35788999999999999999998754110000      00000000      000011100                   


Q ss_pred             -eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH
Q 027503           59 -KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE  137 (222)
Q Consensus        59 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~  137 (222)
                       ....+.+++|.|.-..   ...+....+..+.|+|+.+......  ..   ...   ...|.++++||+|+.+......
T Consensus       100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~--~~---~~~---~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL--KY---PGM---FKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh--hh---HhH---HhhCCEEEEEHHHccccchhhH
Confidence             0135566666662100   0111123344556677665432111  00   111   1267899999999975332223


Q ss_pred             HHHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHH
Q 027503          138 EEGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       138 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      +.........  ..+++++|+++|.|+.++|+++.+.
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3333333333  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.31  E-value=2.6e-11  Score=109.83  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=79.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEE--EECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNI--RVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+++|+.++|||||+.+|+...-....                ....+++.....+  ..++....+.|+|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3456778999999999999999999753211100                0011122111122  234445788999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      |+..|.......+..+|++++|+|+..+.......-|.. +...   +.|.++++||+|..
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence            999888888888999999999999987643333222322 2222   36789999999975

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.30  E-value=6.5e-11  Score=100.83  Aligned_cols=161  Identities=17%  Similarity=0.224  Sum_probs=118.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+++.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+...- ..+|++.+
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            5788999999999999999999999888766666666677677777677777888888754 223222222 78899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCe-EEEEccccCCCHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  168 (222)
                      +||.+++.+|..+...+..-...  .+.|+++|++|+|+.+..+ ..... .+++.+++++ -+.+|...... .++|..
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            99999999999877654433322  4599999999999976432 22222 7889999875 45666664223 889999


Q ss_pred             HHHHHHHhh
Q 027503          169 MINQIHQTT  177 (222)
Q Consensus       169 l~~~i~~~~  177 (222)
                      |+..+..-.
T Consensus       578 L~~~A~~Ph  586 (625)
T KOG1707|consen  578 LATMAQYPH  586 (625)
T ss_pred             HHHhhhCCC
Confidence            888766544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=2.4e-11  Score=90.67  Aligned_cols=63  Identities=22%  Similarity=0.174  Sum_probs=44.6

Q ss_pred             EEEEEeCCChhh----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503           62 KAQIWDTAGQER----FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS  127 (222)
Q Consensus        62 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  127 (222)
                      .+.|+||||...    ...++..+++.+|++|+|.+++...+-.+...+.+......   ..+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence            578999999643    34678888899999999999998655455454444443333   4488888985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01882 BMS1 Bms1

Probab=99.30  E-value=6.7e-11  Score=92.64  Aligned_cols=140  Identities=14%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .....|+|+|.+|+|||||++.+.+...........+ .+   .+.. .....+.++||||..  .. .....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i~~-~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TVVT-GKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EEEe-cCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            3457799999999999999999986532111111111 11   1111 133578899999854  22 234468899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCCHH---HH-HHHHHH--cCCeEEEEccccCCC
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVNEE---EG-KILAET--EGLYFMETSAMQNLN  161 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~---~~-~~~~~~--~~~~~~~~Sa~~~~g  161 (222)
                      +|+|...+..... ..++..+...   +.|. ++|+||+|+.+....-.+   .. ..+...  .+.+++.+||+++-.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999986543332 2233333332   3675 459999998643211111   11 112221  246899999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.1e-11  Score=97.07  Aligned_cols=163  Identities=21%  Similarity=0.196  Sum_probs=103.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEEE--------------E----E------CCeEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRNI--------------R----V------GDKLIK   62 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~--------------~----~------~~~~~~   62 (222)
                      +..++|.++|+..-|||||..+|.+--..   +.....+++...+...              .    .      ......
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            67899999999999999999999863221   1111111111111100              0    0      022357


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHH
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEG  140 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~  140 (222)
                      +.|+|.||++-..+...+-..-.|++++|++++.+-.-......+..+.-.. - ..++++-||+|+...+.  -+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-i-k~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-I-KNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-c-ceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999776655555556799999999997532222233233333222 1 45889999999986321  223334


Q ss_pred             HHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          141 KILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       141 ~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ++|.+.   .+.+++++||..+.||+.++++|.+.+-
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            455443   3579999999999999999988877654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.3e-11  Score=103.67  Aligned_cols=166  Identities=20%  Similarity=0.198  Sum_probs=107.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC------------Ce----EEEEEEEeCCChhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG------------DK----LIKAQIWDTAGQERF   74 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~~   74 (222)
                      +.+-|||||+..+|||-|+..+.+..+...-..+++..+.-..+...            +.    --.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            56779999999999999999998866544433333222211111111            11    115789999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-----------------CCH
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-----------------VNE  137 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~  137 (222)
                      ..+.......+|++|+|+|+.++---+.+. -+..++.   .+.|+||.+||+|-.-...                 +..
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            999999999999999999998752111111 1233333   3489999999999652111                 000


Q ss_pred             HHH-------HHHHHH-cC-------------CeEEEEccccCCCHHHHHHHHHHHHHHhhhhh
Q 027503          138 EEG-------KILAET-EG-------------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQK  180 (222)
Q Consensus       138 ~~~-------~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~  180 (222)
                      +..       -+|+.+ ++             +.++++||.+|+||.+++-+|++........+
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            100       111111 11             45889999999999999988888776655544

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.27  E-value=6.3e-11  Score=98.59  Aligned_cols=159  Identities=19%  Similarity=0.233  Sum_probs=105.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC--CC------------CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEF--RL------------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA   76 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   76 (222)
                      ..-+|+|+-+..-|||||+..|+...-  ..            ......++++-.+...+......+.++||||+..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            345799999999999999999986432  11            1122345555555555555557899999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHH------HHcC
Q 027503           77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILA------ETEG  148 (222)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~------~~~~  148 (222)
                      -....+...|++++++|+.++. ....+.-   +......+.+.|||+||+|.++.+.  +-++...-|.      .+++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            8999999999999999998752 1222222   2333334467788899999876432  2122222222      2356


Q ss_pred             CeEEEEccccCC----------CHHHHHHHHHHHH
Q 027503          149 LYFMETSAMQNL----------NVEDAFLQMINQI  173 (222)
Q Consensus       149 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i  173 (222)
                      +|+++.|+..|.          ++.-+|+.|++.+
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            899999988654          4556666665554

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.26  E-value=4.9e-11  Score=89.00  Aligned_cols=151  Identities=17%  Similarity=0.062  Sum_probs=87.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE---------------EEEC-------------------
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN---------------IRVG-------------------   57 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~-------------------   57 (222)
                      .++|.|.|++|||||+|+.+++..-........++.+.++..               +...                   
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            489999999999999999987754433222222222222200               0000                   


Q ss_pred             -CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503           58 -DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN  136 (222)
Q Consensus        58 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~  136 (222)
                       ...+.+.|+...|.=   ...-++.-..+.-|+|+|+..++....  +-...+.      ..=++|+||.||...-..+
T Consensus        93 ~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~d  161 (202)
T COG0378          93 DFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGAD  161 (202)
T ss_pred             cCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCcc
Confidence             000234444444400   001111112236677777776532111  0001111      1237889999999877777


Q ss_pred             HHHHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          137 EEEGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       137 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+...+-+++.  +.+++++|.++|+|++++++++...+
T Consensus       162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            77777766664  48999999999999999998887653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.25  E-value=1.1e-10  Score=95.86  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EE  138 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~  138 (222)
                      +.+.|+||+|...-..   .....+|.++++.+...+.....+.   ..+.+     +.-++|+||+|+.......  ..
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            6789999999663222   2466799999998755554443322   11212     2238899999987533211  11


Q ss_pred             HHHHHHHH-------cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          139 EGKILAET-------EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       139 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +.......       +..+++.+|+.++.|++++++.+.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11111111       2257999999999999999999988654

>cd01900 YchF YchF subfamily

Probab=99.23  E-value=1.8e-10  Score=92.16  Aligned_cols=80  Identities=20%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh------
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER------   73 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~------   73 (222)
                      |+|+|.|+||||||+|+|.+........|..+.+.....+.+.+.               +..+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998875555566666666555555543               23589999999432      


Q ss_pred             -hhhhhHhhhcCCcEEEEEEeC
Q 027503           74 -FRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        74 -~~~~~~~~~~~~d~~i~v~d~   94 (222)
                       ........++.+|++++|+|.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence             111233456789999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.22  E-value=5.7e-10  Score=92.59  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=93.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC----cCC------------CCCCCC---cceeeEE---E--EE-EECCeEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD----EFR------------LDSKPT---IGVEFAY---R--NI-RVGDKLIKA   63 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~--~~-~~~~~~~~~   63 (222)
                      ....+.|.|+|+.++|||||+|+|.+.    ...            +.+.+.   .+.+...   .  .+ ..++....+
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            456789999999999999999999987    222            111222   2222222   1  12 224555689


Q ss_pred             EEEeCCChhhh--------hh---------------------hhHhhhc-CCcEEEEEE-eCC--C--hhhHH-HHHHHH
Q 027503           64 QIWDTAGQERF--------RA---------------------ITSSYYR-GALGALLVY-DIT--R--RATFE-NTKKWL  107 (222)
Q Consensus        64 ~l~Dt~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~--~--~~s~~-~~~~~~  107 (222)
                      .++||+|...-        ..                     =+...+. ++|+.|+|. |.+  +  ++.+. .-..|+
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            99999993310        00                     0334455 889988888 653  1  12222 223455


Q ss_pred             HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc--CCCHHHHHH
Q 027503          108 RELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ--NLNVEDAFL  167 (222)
Q Consensus       108 ~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~~~  167 (222)
                      ..++...   +|+++|+|+.|-....  ..+.+..+...++++++.+|+..  ...|..+++
T Consensus       174 ~eLk~~~---kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~  230 (492)
T TIGR02836       174 EELKELN---KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLE  230 (492)
T ss_pred             HHHHhcC---CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHH
Confidence            5555544   9999999999943212  44556677777888877777653  334444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.21  E-value=1.7e-10  Score=95.40  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=78.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYY   82 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~   82 (222)
                      ..++|+|+|.+|+|||||||+|.|-.-.....+.+|+   +.....+.....+ .+.+||.||......     +...-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            5789999999999999999999764322222222221   2222333333322 589999999653222     222335


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCC-------CCCCCCHHH----HHHHHHH----
Q 027503           83 RGALGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLT-------HSREVNEEE----GKILAET----  146 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~~~----  146 (222)
                      ..-|.+|++.+-    .|..... +...+...   ++|+++|-+|+|..       ..+..+.+.    .++.+..    
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            566887776653    2333222 22334443   48999999999951       112223222    2222222    


Q ss_pred             cC---CeEEEEccccC--CCHHHHHHHHHHHHHHhh
Q 027503          147 EG---LYFMETSAMQN--LNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       147 ~~---~~~~~~Sa~~~--~gi~~~~~~l~~~i~~~~  177 (222)
                      .+   -++|.+|..+-  .++..+.+.|.+.+-.++
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            23   35889998864  457777777777665554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=2.3e-10  Score=97.50  Aligned_cols=153  Identities=23%  Similarity=0.234  Sum_probs=101.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----------------------------CCCCcceeeEEEEEEECCeEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-----------------------------SKPTIGVEFAYRNIRVGDKLI   61 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (222)
                      ..+.++++|+..+|||||+.+|+..--...                             -....|+........++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            578999999999999999998763210000                             022234455555555656667


Q ss_pred             EEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFE---NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .++|+|+||+..|-.....-...+|+.++|+|++-.+   .|+   ..+.....++... . ..++|++||+|+.+...-
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i-~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-I-SQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-c-ceEEEEeecccccCccHH
Confidence            8999999998888887888888999999999998642   222   1222223333333 2 457888999999875443


Q ss_pred             CHHHHH----HHH-HHcC-----CeEEEEccccCCCHHHH
Q 027503          136 NEEEGK----ILA-ETEG-----LYFMETSAMQNLNVEDA  165 (222)
Q Consensus       136 ~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gi~~~  165 (222)
                      -.+++.    .|. ...|     +.|++||+.+|+|+-..
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            333332    222 2333     57999999999987543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.1e-10  Score=94.12  Aligned_cols=155  Identities=17%  Similarity=0.149  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      .|+..|+-.-|||||++.+.+...   ++......+.+..+.....++.  .+.|+|.||++++-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            578899999999999999987543   3455667778887777777765  78999999999888777778889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH---HcCCeEEEEccccCCCHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |++.+++-..+. ...+..+.-...  ...++|+||+|..+...+. +...+...   ....+++.+|+.+|+||.++.+
T Consensus        80 vV~~deGl~~qt-gEhL~iLdllgi--~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQT-GEHLLILDLLGI--KNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhh-HHHHHHHHhcCC--CceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999976533222 222233333321  2348889999998743221 12222221   3346789999999999999999


Q ss_pred             HHHHHHH
Q 027503          168 QMINQIH  174 (222)
Q Consensus       168 ~l~~~i~  174 (222)
                      .|.+...
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9998885

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.17  E-value=1.2e-09  Score=88.04  Aligned_cols=116  Identities=15%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------   73 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   73 (222)
                      ..++|+|+|.+|+|||||+|.|++.......          ..+..+......+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            5789999999999999999999986654332          12223344444566678889999999999221       


Q ss_pred             -----------hhhhh-------H--hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           74 -----------FRAIT-------S--SYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        74 -----------~~~~~-------~--~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                                 |....       +  ..=.+.|+++++++++... .-.++    ..++..... +++|-|+.|+|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls~~-vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLSKR-VNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHTTT-SEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhccc-ccEEeEEecccccC
Confidence                       11100       0  1112568999999987531 22232    223343333 88999999999865

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.17  E-value=2.5e-09  Score=87.57  Aligned_cols=130  Identities=18%  Similarity=0.251  Sum_probs=88.8

Q ss_pred             eeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHHHHHHHHHHHcC----C
Q 027503           48 EFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATF-------ENTKKWLRELREFCS----S  116 (222)
Q Consensus        48 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~l~~~~~----~  116 (222)
                      .+....+.+.+  ..|.++|.+|+...+.-|.+.+.+++++|+|+++++-...       ..+..-+..+.....    .
T Consensus       184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            33444455544  6889999999999999999999999999999999864321       122222333333322    3


Q ss_pred             CCeEEEEEeCCCCCCC---------------CCCCHHHHHHHHHH----------cCCeEEEEccccCCCHHHHHHHHHH
Q 027503          117 CMAIVLVGNKSDLTHS---------------REVNEEEGKILAET----------EGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       117 ~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ..++|+++||.|+-++               .....+++..+...          ..+.+..+.|.+..+|+.+|..+.+
T Consensus       262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d  341 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD  341 (354)
T ss_pred             cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence            4899999999998431               11233444433322          2356777899999999999999998


Q ss_pred             HHHHhhhh
Q 027503          172 QIHQTTIQ  179 (222)
Q Consensus       172 ~i~~~~~~  179 (222)
                      .+.....+
T Consensus       342 ~Ii~~nlk  349 (354)
T KOG0082|consen  342 TIIQNNLK  349 (354)
T ss_pred             HHHHHHHH
Confidence            88766543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.16  E-value=4.3e-10  Score=91.79  Aligned_cols=103  Identities=15%  Similarity=0.028  Sum_probs=63.8

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE-  139 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-  139 (222)
                      +.+.|+||+|....   .......+|.++++......   +++......+.     ++|.++|+||+|+.......... 
T Consensus       127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence            57889999985422   22356677888888654433   34333333222     37789999999987532211000 


Q ss_pred             -----HHHHHH---HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          140 -----GKILAE---TEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       140 -----~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                           ...+..   .+..+++.+|++++.|++++++++.+...
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 011111   12346999999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=3.3e-10  Score=100.89  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=87.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----C-----------CCCcceeeEEEEEEECCe-EEEEEEEeCCCh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-----S-----------KPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQ   71 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~   71 (222)
                      .+..-+|.|+|+..+|||||..+++-..-...     .           ....++++....++.... ...+.++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            66778899999999999999999873221100     0           111344454444444444 478999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      -.|.......++-+|++++|+|+..+-..+...-|.+...    .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence            9999999999999999999999998755454444544333    3389999999999764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.15  E-value=2.1e-09  Score=94.03  Aligned_cols=122  Identities=14%  Similarity=0.127  Sum_probs=73.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------h---
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSK-PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------A---   76 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---   76 (222)
                      +-+..++|+|+|.+|+||||++|.|++........ ...+..........++  ..+.++||||.....       .   
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            34567899999999999999999999976433332 1222222222233444  578999999955321       1   


Q ss_pred             hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCCC
Q 027503           77 ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLTH  131 (222)
Q Consensus        77 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~  131 (222)
                      ....++.  .+|++|+|..++.......-..++..+....+.+  ..+|||.|+.|...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            1222333  5899999998764322112223444444433211  35788899999874

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.14  E-value=8.7e-11  Score=93.75  Aligned_cols=157  Identities=18%  Similarity=0.113  Sum_probs=106.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSYY   82 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~   82 (222)
                      ...-|.++|..|+|||||+++|.+....+...-..+.+............ .+.+.||-|.-.        ....+....
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            45679999999999999999999877666665566666665555554443 578899999432        112344566


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE----EEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI----VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      ..+|.++-|.|+++|..-.....-+..+....-...|.    +=|=||+|..... .+.+       ..+  .+.+|+.+
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--cccccccc
Confidence            78999999999999987666555555555554222333    3345777765322 1111       121  56799999


Q ss_pred             CCCHHHHHHHHHHHHHHhhh
Q 027503          159 NLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~~~~  178 (222)
                      |.|+.++.+.+-..+.....
T Consensus       326 gdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVASETT  345 (410)
T ss_pred             CccHHHHHHHHHHHhhhhhe
Confidence            99999999888777665543

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=7.7e-10  Score=86.93  Aligned_cols=119  Identities=20%  Similarity=0.254  Sum_probs=70.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCc------ceee----------------------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTI------GVEF----------------------------   49 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~------~~~~----------------------------   49 (222)
                      -....|+++|+.|+||||+++.+.+..+.+..      .|+.      ...+                            
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            34568999999999999999999987532211      0100      0000                            


Q ss_pred             ---------EEEEEEECC-eEEEEEEEeCCChhh-------------hhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHH
Q 027503           50 ---------AYRNIRVGD-KLIKAQIWDTAGQER-------------FRAITSSYYR-GALGALLVYDITRRATFENTKK  105 (222)
Q Consensus        50 ---------~~~~~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~  105 (222)
                               ....+.+.+ ....|+++|+||...             ...+...|+. ..+++++|+|+...-.-.+...
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                     000111100 113789999999642             2235667777 4468888998765332222222


Q ss_pred             HHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503          106 WLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus       106 ~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      +.   +.....+.|+++|+||.|..+
T Consensus       184 ia---~~ld~~~~rti~ViTK~D~~~  206 (240)
T smart00053      184 LA---KEVDPQGERTIGVITKLDLMD  206 (240)
T ss_pred             HH---HHHHHcCCcEEEEEECCCCCC
Confidence            22   333334589999999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=7e-10  Score=91.84  Aligned_cols=138  Identities=17%  Similarity=0.122  Sum_probs=95.6

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCc--CC--------------CCC----CCCcceeeEEEEEEECCeEEEEEEE
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE--FR--------------LDS----KPTIGVEFAYRNIRVGDKLIKAQIW   66 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~   66 (222)
                      ++-.+.-..+|+-+|.+|||||-..|+--.  ..              .+.    ....|+++......++.....+.|.
T Consensus         7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL   86 (528)
T COG4108           7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL   86 (528)
T ss_pred             HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence            334455668999999999999999976211  00              000    1113566666666666666889999


Q ss_pred             eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503           67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET  146 (222)
Q Consensus        67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (222)
                      ||||++.|..-+...+..+|.+++|+|+..+-- ....+++...   ...++|++=++||.|-.  ..-+.+...+....
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVc---rlR~iPI~TFiNKlDR~--~rdP~ELLdEiE~~  160 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVC---RLRDIPIFTFINKLDRE--GRDPLELLDEIEEE  160 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHH---hhcCCceEEEeeccccc--cCChHHHHHHHHHH
Confidence            999999999999999999999999999986532 1223333333   33459999999999954  33345666666666


Q ss_pred             cCCe
Q 027503          147 EGLY  150 (222)
Q Consensus       147 ~~~~  150 (222)
                      +++.
T Consensus       161 L~i~  164 (528)
T COG4108         161 LGIQ  164 (528)
T ss_pred             hCcc
Confidence            6544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1e-09  Score=94.81  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=88.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC---------------cceeeEEEEEE-----ECCeEEEEEE
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT---------------IGVEFAYRNIR-----VGDKLIKAQI   65 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~~~~~l   65 (222)
                      ..+.+...+++++|+-++|||+|+..|.....+..+..+               .+..+.....+     ..++.+-+.+
T Consensus       122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni  201 (971)
T KOG0468|consen  122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI  201 (971)
T ss_pred             ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence            345678899999999999999999999876654332111               11222211111     2466678899


Q ss_pred             EeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +||||+-.|..-....+..+|++++++|+.++-.+..-+    .++....+..|+++|+||+|..
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHHH
Confidence            999999999998999999999999999998876554422    2344444558999999999964

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.08  E-value=5e-10  Score=89.79  Aligned_cols=55  Identities=18%  Similarity=0.092  Sum_probs=39.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          118 MAIVLVGNKSDLTHSREVNEEEGKILAET--EGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       118 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      .+-++|+||+|+........+........  .+.+++.+|+++|+|++++++||.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999975322223333333333  35789999999999999999999764

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=7.3e-10  Score=84.58  Aligned_cols=147  Identities=19%  Similarity=0.245  Sum_probs=92.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhHhhhcCC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-----AITSSYYRGA   85 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~   85 (222)
                      .-||+++|.+|||||++=-.++.+-. .....++.++++.-.++.+-|. ..+.+||++|++.+-     ......+.+.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            45899999999999998766553221 1233555666776666666543 468999999998543     2445678899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHH---HHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHH----HHHHHcCCeEEEEcc
Q 027503           86 LGALLVYDITRRATFENTKKWL---RELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGK----ILAETEGLYFMETSA  156 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~---~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~----~~~~~~~~~~~~~Sa  156 (222)
                      +++++|||+...+-..++..+-   ..+.... ....+.++.+|+|+.....  .......    .+....++.++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            9999999999875444444333   3333333 3366778889999975332  1112221    222223456777776


Q ss_pred             ccCC
Q 027503          157 MQNL  160 (222)
Q Consensus       157 ~~~~  160 (222)
                      .+..
T Consensus       162 wDet  165 (295)
T KOG3886|consen  162 WDET  165 (295)
T ss_pred             hhHH
Confidence            6543

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=5.6e-09  Score=84.96  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=85.5

Q ss_pred             CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC-cceeeEEEEEEEC------Ce--------E-------
Q 027503            3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT-IGVEFAYRNIRVG------DK--------L-------   60 (222)
Q Consensus         3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~------~~--------~-------   60 (222)
                      .+.+.+++-...|+++|.-..|||||++.|+...++....-. .+.+.+.....-+      |.        +       
T Consensus        49 ~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~F  128 (532)
T KOG1954|consen   49 ALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKF  128 (532)
T ss_pred             cccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhh
Confidence            466778888999999999999999999999999887554222 2222222211111      00        0       


Q ss_pred             ------------------EEEEEEeCCChh-----------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027503           61 ------------------IKAQIWDTAGQE-----------RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR  111 (222)
Q Consensus        61 ------------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  111 (222)
                                        -.++++||||.-           .|.....+|..++|.+|++||+.-.+--++   +-..+.
T Consensus       129 G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE---f~~vi~  205 (532)
T KOG1954|consen  129 GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE---FKRVID  205 (532)
T ss_pred             HHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHH---HHHHHH
Confidence                              267899999932           255678899999999999999764432222   223344


Q ss_pred             HHcCCCCeEEEEEeCCCCCCC
Q 027503          112 EFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus       112 ~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      ....+.-.+-||+||+|..+.
T Consensus       206 aLkG~EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  206 ALKGHEDKIRVVLNKADQVDT  226 (532)
T ss_pred             HhhCCcceeEEEeccccccCH
Confidence            444444567888999998764

>cd01859 MJ1464 MJ1464

Probab=98.96  E-value=2.6e-09  Score=78.84  Aligned_cols=95  Identities=19%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFME  153 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (222)
                      |+.+..+.+.++|++++|+|+.++..... ..+...+.   ..+.|+++|+||+|+.+....  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            45678888899999999999987643322 11222221   234899999999998642211  1111333445678999


Q ss_pred             EccccCCCHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999998887654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.96  E-value=1.8e-08  Score=82.16  Aligned_cols=117  Identities=15%  Similarity=0.246  Sum_probs=74.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------   73 (222)
                      ...+.|+++|+.|+|||||+|.|++......          ..++..+..+...+.-++..+.+.++||||...      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5689999999999999999999998743322          123344455555666678888999999999321      


Q ss_pred             ------------hhhh-------hHh-hh--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           74 ------------FRAI-------TSS-YY--RGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        74 ------------~~~~-------~~~-~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                                  +...       .+. .+  .+.|+++|.+.++... +-.++. .+..+...    +-+|-|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls~~----vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLSKR----VNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHhcc----cCeeeeeeccccC
Confidence                        1110       011 11  2568999999877432 222222 23333332    5567778899986


Q ss_pred             C
Q 027503          131 H  131 (222)
Q Consensus       131 ~  131 (222)
                      .
T Consensus       176 T  176 (373)
T COG5019         176 T  176 (373)
T ss_pred             C
Confidence            4

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.7e-08  Score=81.51  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChh---
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------------DKLIKAQIWDTAGQE---   72 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~---   72 (222)
                      .+++.|+|.||||||||.|++..........|..+++-......+.                -.+..+.++|.+|..   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            4789999999999999999999888654555666555444333321                123578899999833   


Q ss_pred             ----hhhhhhHhhhcCCcEEEEEEeCC
Q 027503           73 ----RFRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        73 ----~~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                          -...-....++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                23445567788999999999865

>cd01855 YqeH YqeH

Probab=98.95  E-value=7.8e-09  Score=78.86  Aligned_cols=95  Identities=24%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HH
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ET  146 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~  146 (222)
                      ..+..++..+++++|++++|+|+.++...     |...+... ..+.|+++|+||+|+.... ...+....+.     ..
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~   94 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence            33577888999999999999999876421     22222222 2348999999999997532 2333333333     22


Q ss_pred             cCC---eEEEEccccCCCHHHHHHHHHHHH
Q 027503          147 EGL---YFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       147 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+.   .++.+||++|.|++++++.+.+.+
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            333   689999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3e-08  Score=81.36  Aligned_cols=145  Identities=17%  Similarity=0.246  Sum_probs=86.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   73 (222)
                      ...|.++++|+.|.|||||+|.|+...+...         ...+..+......+.-+|..+.++++||||...       
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3569999999999999999999988755432         122333444445556678888999999999211       


Q ss_pred             -----------hh-------hhhHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           74 -----------FR-------AITSSYYR--GALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        74 -----------~~-------~~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                                 +.       .+.+..+.  +.|+++|.+.++... .-.++. .+..+..    .+.+|-|+.|+|....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~----~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK----KVNLIPVIAKADTLTK  173 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc----cccccceeeccccCCH
Confidence                       11       11222333  679999999877531 112211 2222322    2667777899998653


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEEccccC
Q 027503          133 REVNE--EEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus       133 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      .+...  ..+..-....+++++.......
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            32211  1123334556677666554443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=3.1e-08  Score=76.29  Aligned_cols=154  Identities=17%  Similarity=0.204  Sum_probs=86.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   73 (222)
                      ...|+|+++|.+|.|||||+|.|+...+....         ..|.........+.-++...+++++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            45899999999999999999999865432211         11122222333455567778899999999221       


Q ss_pred             -----------hhh--------hhHhhhc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           74 -----------FRA--------ITSSYYR--GALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        74 -----------~~~--------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                                 |..        .....++  +.+++++.+..+. .++..+. .+++.+.+.    +.++-|+-|+|...
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeeccccc
Confidence                       111        1122332  4578888887764 3333322 233444433    45666778999653


Q ss_pred             CCC--CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503          132 SRE--VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      -++  .-.+.++.-...+++.+++.-+.+...-+..++.
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            111  1112223333456777777666555444444433

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=1.1e-08  Score=84.95  Aligned_cols=93  Identities=20%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503           76 AITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                      .+.+..+.++|.+++|+|+.++. ....+..|+..+..   .++|++||+||+|+......  ..........+++++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            45556789999999999999875 44456677665533   34899999999999642211  12223334678899999


Q ss_pred             ccccCCCHHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ||.++.|++++++.+...+
T Consensus       156 SA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        156 SVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EcCCCCCHHHHhhhhccce
Confidence            9999999999998887643

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.90  E-value=9.6e-08  Score=74.13  Aligned_cols=93  Identities=22%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAI   77 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~   77 (222)
                      |+-.+....+|+++|-|.+|||||+..+....-........+.+.....+.+++  ..+++.|.||..+-       ...
T Consensus        55 FeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQ  132 (364)
T KOG1486|consen   55 FEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQ  132 (364)
T ss_pred             eeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCce
Confidence            444566788999999999999999999876543333333444555556677776  56799999995421       223


Q ss_pred             hHhhhcCCcEEEEEEeCCChhh
Q 027503           78 TSSYYRGALGALLVYDITRRAT   99 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s   99 (222)
                      ..+..+.+|.+++|.|++..+.
T Consensus       133 viavArtaDlilMvLDatk~e~  154 (364)
T KOG1486|consen  133 VIAVARTADLILMVLDATKSED  154 (364)
T ss_pred             EEEEeecccEEEEEecCCcchh
Confidence            4456778999999999987653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.88  E-value=3.6e-08  Score=78.42  Aligned_cols=154  Identities=18%  Similarity=0.069  Sum_probs=89.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCCc---------------ceeeEEEEEEE---------
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPTI---------------GVEFAYRNIRV---------   56 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~---------   56 (222)
                      ...|.|.|.||+|||||+..|...-.           ++++..+-               ..+.+.+....         
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~  130 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR  130 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence            45899999999999999998863211           12221110               11112111111         


Q ss_pred             ---------CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503           57 ---------GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS  127 (222)
Q Consensus        57 ---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  127 (222)
                               +.-.+.+.|+.|.|--+..   ......+|.+++|.-..-++..+.+..=   +-+.     -=++|+||.
T Consensus       131 at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEi-----aDi~vINKa  199 (323)
T COG1703         131 ATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IMEI-----ADIIVINKA  199 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hhhh-----hheeeEecc
Confidence                     1122577888888743222   2445668999998877766555544432   2222     237889999


Q ss_pred             CCCCCCCCCHHHHHHHHHH--------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          128 DLTHSREVNEEEGKILAET--------EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      |......--.+....+-..        +.-+++.+||.+|+|++++++.+.+...-.
T Consensus       200 D~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         200 DRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             ChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            9543211111111111111        235799999999999999998888765543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.87  E-value=1.5e-08  Score=86.13  Aligned_cols=165  Identities=21%  Similarity=0.364  Sum_probs=119.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+|+.|+|..++|||+|+++++...+...-.+ .+ ..+.+.+-.++...-+.+.|-+|.-     ...|....|++|+
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~-e~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EG-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCC-cC-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            578999999999999999999998887544322 22 3344555566666677788887722     4456678899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCC--CCCCCHHHHHHHH-HHcCCeEEEEccccCCCHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTH--SREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ||.+.+..+|+.+..+...+..+. ...+|+++++++.-+..  .+.+.+..++.++ +...+.++++.+..|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            999999999999887766664443 34588888887654322  2333444444444 4445789999999999999999


Q ss_pred             HHHHHHHHHhhhhhhh
Q 027503          167 LQMINQIHQTTIQKSL  182 (222)
Q Consensus       167 ~~l~~~i~~~~~~~~~  182 (222)
                      +.+..++...+.....
T Consensus       182 ~~~~~k~i~~~~~qq~  197 (749)
T KOG0705|consen  182 QEVAQKIVQLRKYQQL  197 (749)
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999988877544443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.87  E-value=1.1e-08  Score=83.06  Aligned_cols=88  Identities=15%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             HhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccc
Q 027503           79 SSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAM  157 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (222)
                      ...+.++|.+++|+|+.++. ++..+..|+..+...   ++|+++|+||+|+.+..  .......+....+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            34588999999999999987 778888887766543   48999999999996531  1122233345578899999999


Q ss_pred             cCCCHHHHHHHHHH
Q 027503          158 QNLNVEDAFLQMIN  171 (222)
Q Consensus       158 ~~~gi~~~~~~l~~  171 (222)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.87  E-value=3.9e-09  Score=82.61  Aligned_cols=154  Identities=16%  Similarity=0.086  Sum_probs=83.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCC---------------cceeeEEEEEEECC------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPT---------------IGVEFAYRNIRVGD------   58 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------   58 (222)
                      ..+.|.|.|+||+|||||++.|...-.           ++++..+               .....+.+..-..+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            567999999999999999998763211           1111000               01122222222110      


Q ss_pred             ------------eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q 027503           59 ------------KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK  126 (222)
Q Consensus        59 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  126 (222)
                                  -.+.+.|++|.|--..   -.....-+|.+++|..+..++..+.+..-   +-+.     +=++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi-----aDi~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAG---IMEI-----ADIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhh---hhhh-----ccEEEEeC
Confidence                        1156778888763221   22345678999999998877655544332   2222     23788899


Q ss_pred             CCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          127 SDLTHSREVNEEEGKILAET-------EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      +|....... ..+.+.....       +..+++.+||.++.|++++++.+.+.....
T Consensus       177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            995432111 1111111111       235899999999999999998887754433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.84  E-value=1.1e-08  Score=80.39  Aligned_cols=158  Identities=22%  Similarity=0.168  Sum_probs=95.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC-CcceeeEEEEEEECCeEEEEEEEeCCCh----------hhh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-TIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERF   74 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~   74 (222)
                      +.+++..++++++|.+++|||+|+|.++.......... ..+.......+.++.   .+.++|.||.          ..+
T Consensus       130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence            44567789999999999999999999987664433322 444444445555554   6789999991          234


Q ss_pred             hhhhHhhhcCCc---EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC----CCHHHHHH-HH--
Q 027503           75 RAITSSYYRGAL---GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE----VNEEEGKI-LA--  144 (222)
Q Consensus        75 ~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-~~--  144 (222)
                      ..+...|+.+-+   -+++++|++-+..-.+.. .++.+.+   .++|+.+|.||+|......    -+..-+.. |.  
T Consensus       207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            555666654332   456667766543212211 1222333   3499999999999753111    11111111 11  


Q ss_pred             ----HHcCCeEEEEccccCCCHHHHHHHHH
Q 027503          145 ----ETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus       145 ----~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                          .....+.+.+|+.++.|+++++-.+.
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehh
Confidence                11225677899999999998774443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.82  E-value=1.8e-07  Score=79.16  Aligned_cols=113  Identities=16%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFC-SSCMAIVLVGNKSDL  129 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl  129 (222)
                      ..+.++|.+|+...+.-|..++.+++++|+|+++++-.          .+.+....+..+.... -...|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            57899999999988999999999999999999987421          1222222333332221 245899999999996


Q ss_pred             CC------C----------CC--CCHHHHHHHHHH------------cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          130 TH------S----------RE--VNEEEGKILAET------------EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       130 ~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ..      .          ..  ...+.+..+...            ..+.++.++|.+...+..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            31      0          11  233445544432            224577899999999999998876643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=6.6e-08  Score=76.62  Aligned_cols=145  Identities=18%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc----------CCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE----------FRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      ..-++|..+|+..-|||||..++..--          +....    ....++++...++.++-....+..+|+||+..|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            356899999999999999998865311          11111    1224566666666666555678899999999887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVN---EEEGKILAETEG---  148 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  148 (222)
                      .....-....|+.|+|+++++..- ...+..+...+..   ++|. ++++||+|+.+..+..   ..+.+++...++   
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            666666667899999999998531 1112222222332   2554 5669999998744322   233456666666   


Q ss_pred             --CeEEEEcccc
Q 027503          149 --LYFMETSAMQ  158 (222)
Q Consensus       149 --~~~~~~Sa~~  158 (222)
                        .|++.-||..
T Consensus       166 d~~Pii~gSal~  177 (394)
T COG0050         166 DDTPIIRGSALK  177 (394)
T ss_pred             CCcceeechhhh
Confidence              4688888764

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.80  E-value=1.3e-07  Score=77.52  Aligned_cols=157  Identities=19%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC--------------cceeeEEEEEEECCeE------------
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT--------------IGVEFAYRNIRVGDKL------------   60 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~------------   60 (222)
                      ++-+..+.+.++|+.+.|||||+-.|..+..+...-.+              .+-++....+-+++..            
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            44556788999999999999999988765543332111              1222222222222111            


Q ss_pred             ---------EEEEEEeCCChhhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           61 ---------IKAQIWDTAGQERFRA--ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        61 ---------~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                               .-+.|+||.|++.|-.  +...+-...|..++++.+++..+-.. +..+..+.   ..+.|+++++||+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~  267 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDM  267 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEeccc
Confidence                     2568999999998754  44455678899999999998754221 22222222   224899999999999


Q ss_pred             CCCCCCCH--HHHH----------------------HHHHHcC---CeEEEEccccCCCHHHHHH
Q 027503          130 THSREVNE--EEGK----------------------ILAETEG---LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       130 ~~~~~~~~--~~~~----------------------~~~~~~~---~~~~~~Sa~~~~gi~~~~~  167 (222)
                      .....+..  ++..                      ..+...+   +|++.+|+.+|+|++-+.+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            75322110  1111                      1111122   5899999999999865443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.79  E-value=4.4e-08  Score=81.29  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEccccCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                      ..++|.+++|++++...++..+..|+..+..   .++|++||+||+|+...... ............+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4678999999999888899999999775543   34889999999999753211 1112223334567899999999999


Q ss_pred             CHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQ  172 (222)
Q Consensus       161 gi~~~~~~l~~~  172 (222)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999888754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=2.4e-08  Score=81.50  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           81 YYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      ...++|++++|+|+.++..+.. +..|+..+..   .++|+++|+||+|+.+... ............+++++.+||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988865444 4667666543   3489999999999963221 122233445567889999999999


Q ss_pred             CCHHHHHHHHHH
Q 027503          160 LNVEDAFLQMIN  171 (222)
Q Consensus       160 ~gi~~~~~~l~~  171 (222)
                      .|++++++.+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999987754

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=8e-08  Score=74.15  Aligned_cols=162  Identities=16%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE--EEEEEECCeEEEEEEEeCCChhhhhh---hhHhhhcCCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA--YRNIRVGDKLIKAQIWDTAGQERFRA---ITSSYYRGAL   86 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d   86 (222)
                      ..+|+++|..-|||||+-+..+...-+...   .-.+..  ...-.+.+.-+.|.+||+||+-.+..   -..+.++...
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT---lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCce---eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            467999999999999998887765533222   111111  11111223446899999999765432   3567789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCC-CC-HHH-----HHHHHH----HcCCeEEE
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSRE-VN-EEE-----GKILAE----TEGLYFME  153 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~-~~-~~~-----~~~~~~----~~~~~~~~  153 (222)
                      ++|+|+|+.+. -.+.+..+...+.+..  ...+.+=|++.|.|...+.. +. ...     ...++.    ...+.|+.
T Consensus       104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            99999998763 2233343333333332  24477788899999754211 11 111     111111    12356788


Q ss_pred             EccccCCCHHHHHHHHHHHHHHhhh
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      +|..+-. |-|.|..+++++..+..
T Consensus       183 TSIyDHS-IfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  183 TSIYDHS-IFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             eeecchH-HHHHHHHHHHHHhhhch
Confidence            8887654 88999999988876653

>cd01858 NGP_1 NGP-1

Probab=98.72  E-value=4.1e-08  Score=72.54  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=38.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999986653332 2333333333344433   468999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.72  E-value=3.6e-08  Score=71.58  Aligned_cols=54  Identities=22%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   71 (222)
                      +++++|.+|+|||||+|+|.+....... ...+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999987764332 2233344444555544   5789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.71  E-value=9.9e-08  Score=79.85  Aligned_cols=95  Identities=24%  Similarity=0.267  Sum_probs=69.7

Q ss_pred             hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 027503           71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI----LAET  146 (222)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~  146 (222)
                      .+.|..+...+.+.++++++|+|+.+..     ..|...+.+... ..|+++|+||+|+.. +....+....    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            5678888888999999999999987643     224444444433 479999999999975 3333344443    3556


Q ss_pred             cCC---eEEEEccccCCCHHHHHHHHHHH
Q 027503          147 EGL---YFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       147 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      .++   .++.+||++|.|++++|+.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            666   48999999999999999988654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.70  E-value=4.3e-08  Score=73.51  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ...++++++|.||+|||||+|+|.+....... +..+.+.....+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            34589999999999999999999987653332 2233444444444443   578999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=3.7e-07  Score=74.68  Aligned_cols=152  Identities=16%  Similarity=0.199  Sum_probs=94.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC-----------------------CcceeeEEEEEEECC--------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-----------------------TIGVEFAYRNIRVGD--------   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--------   58 (222)
                      -..++++++|.-.+|||||+-.|..++.+...-.                       ..+.+..-..+.+..        
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            3689999999999999999988876665433211                       111111111122211        


Q ss_pred             --eEEEEEEEeCCChhhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           59 --KLIKAQIWDTAGQERFRAITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        59 --~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                        ...-++++|.+|+..|...+...+.  -.|..++|++++.+-.+.. +..+..+....   +|++|+++|+|+.+...
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL~---iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAALN---IPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHhC---CCeEEEEEeeccccchh
Confidence              1235789999999988765544443  4688899999987654322 33344444443   99999999999975322


Q ss_pred             C------------------------CHHHHHHHHHH----cCCeEEEEccccCCCHHHH
Q 027503          135 V------------------------NEEEGKILAET----EGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus       135 ~------------------------~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~~  165 (222)
                      +                        +..++-..+.+    .-+|+|.+|..+|+|++-+
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            1                        11111111111    2258999999999998543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.64  E-value=4.1e-06  Score=60.98  Aligned_cols=147  Identities=18%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCC-Chh-----------------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA-GQE-----------------   72 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~-----------------   72 (222)
                      ..+||.+.|+|||||||++.++...-....+   .-.-+....+.-++....|.++|.. |..                 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~---kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY---KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc---eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4689999999999999999988754322111   1123445566677888888888887 311                 


Q ss_pred             ----hhh----hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027503           73 ----RFR----AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA  144 (222)
Q Consensus        73 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  144 (222)
                          .+.    ......+..+|+  +++|---+.-+. ...+...+......+.|++.++.+.+-       ....+.+.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence                011    122344455774  455654443222 245666777777777898888766552       12333444


Q ss_pred             HHcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          145 ETEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       145 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ...++.++    .|..|-+.++..+.+.+.
T Consensus       151 ~~~~v~v~----lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         151 KLGGVYVF----LTPENRNRILNEILSVLK  176 (179)
T ss_pred             hcCCEEEE----EccchhhHHHHHHHHHhc
Confidence            44444443    444555577777776553

>cd01858 NGP_1 NGP-1

Probab=98.59  E-value=2.6e-07  Score=68.29  Aligned_cols=91  Identities=14%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      ..+..+|++++|+|+.++..... ..+...+... ..+.|+++|+||+|+...... ......+........+.+||+.+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence            45678999999999998743211 2222333322 334899999999999642211 11222222222233578999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQI  173 (222)
Q Consensus       160 ~gi~~~~~~l~~~i  173 (222)
                      .|++++++.+.+..
T Consensus        81 ~~~~~L~~~l~~~~   94 (157)
T cd01858          81 FGKGSLIQLLRQFS   94 (157)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999998887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.56  E-value=2.2e-07  Score=69.71  Aligned_cols=59  Identities=24%  Similarity=0.284  Sum_probs=41.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   71 (222)
                      ....++++++|.+|+|||||+|+|.+..+... .+..+.+.....+.++   ..+.++||||.
T Consensus       112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34568999999999999999999998776322 2222333444444443   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.4e-07  Score=81.57  Aligned_cols=119  Identities=20%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      .+.+..-+|+++.+..-|||||+..|+...-...              ...+.+++.....++.-...+.+.++|+||+-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            4556677899999999999999999875432111              12233444444555555556788999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      .|.........-+|++++++|+..+-.-+...    .++..-.++...++|+||+|-
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~----vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYA----VLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHH----HHHHHHHccCceEEEEehhhh
Confidence            99999999999999999999998764322211    122221223557888999993

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=1.1e-06  Score=75.39  Aligned_cols=145  Identities=18%  Similarity=0.136  Sum_probs=85.7

Q ss_pred             CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503            2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY   81 (222)
Q Consensus         2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   81 (222)
                      -++..++-++++-++|+|+||+|||||++.|...-.-    .++ .++.-...-..++..++++..+|. + ..+ ....
T Consensus        59 vdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti-~~i~GPiTvvsgK~RRiTflEcp~-D-l~~-miDv  130 (1077)
T COG5192          59 VDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTI-DEIRGPITVVSGKTRRITFLECPS-D-LHQ-MIDV  130 (1077)
T ss_pred             ccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHH----hhh-hccCCceEEeecceeEEEEEeChH-H-HHH-HHhH
Confidence            3455566678899999999999999999988753311    111 011111112356667899999993 2 222 2344


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH------HHHHHH-cCCeEEEE
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG------KILAET-EGLYFMET  154 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~-~~~~~~~~  154 (222)
                      .+-+|.+++++|.+-+...+. ..++..+..+..  ..++-|+|+.|+-.... ....+      +.|... .|+.+|.+
T Consensus       131 aKIaDLVlLlIdgnfGfEMET-mEFLnil~~HGm--PrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFyl  206 (1077)
T COG5192         131 AKIADLVLLLIDGNFGFEMET-MEFLNILISHGM--PRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYL  206 (1077)
T ss_pred             HHhhheeEEEeccccCceehH-HHHHHHHhhcCC--CceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEe
Confidence            567899999999886643333 234454444432  23566789999864221 11111      122222 46778888


Q ss_pred             cccc
Q 027503          155 SAMQ  158 (222)
Q Consensus       155 Sa~~  158 (222)
                      |-..
T Consensus       207 sgV~  210 (1077)
T COG5192         207 SGVE  210 (1077)
T ss_pred             cccc
Confidence            8653

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.53  E-value=2.8e-07  Score=74.45  Aligned_cols=58  Identities=28%  Similarity=0.401  Sum_probs=41.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   71 (222)
                      ...++++++|.+|+|||||+|+|.+....... +..+.+.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            35689999999999999999999987643332 2233333444455543   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.53  E-value=6.1e-07  Score=66.13  Aligned_cols=85  Identities=16%  Similarity=0.034  Sum_probs=56.1

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++++|+|+.++.+....  ++.. ......++|+++|+||+|+...... .+....+....+..++.+||+++.|+.++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            789999999887654431  2221 1222345899999999998642111 11112233334567899999999999999


Q ss_pred             HHHHHHHHH
Q 027503          166 FLQMINQIH  174 (222)
Q Consensus       166 ~~~l~~~i~  174 (222)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            998877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.52  E-value=3.8e-07  Score=74.10  Aligned_cols=59  Identities=31%  Similarity=0.416  Sum_probs=41.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ...++++|+|.||||||||+|+|.+....... +..+.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            45689999999999999999999987653332 2333343344455543   57899999953

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.52  E-value=1e-05  Score=69.36  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCC------CC-----------------------------------
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDE-FRLDS------KP-----------------------------------   43 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~-~~~~~------~~-----------------------------------   43 (222)
                      ....+..++|+++|+..+||||.+..+.... |+..+      .|                                   
T Consensus       302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~  381 (980)
T KOG0447|consen  302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH  381 (980)
T ss_pred             ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence            3445678999999999999999998765322 11110      00                                   


Q ss_pred             ------------CcceeeEEEEEEECCeE-EEEEEEeCCCh-------------hhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027503           44 ------------TIGVEFAYRNIRVGDKL-IKAQIWDTAGQ-------------ERFRAITSSYYRGALGALLVYDITRR   97 (222)
Q Consensus        44 ------------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (222)
                                  ..++.......++.|.+ -++.++|.||-             +....+..+++.+.+++|+|+--.+.
T Consensus       382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV  461 (980)
T KOG0447|consen  382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV  461 (980)
T ss_pred             HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence                        01112222222232222 26789999992             23456788999999999999965443


Q ss_pred             hhHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027503           98 ATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE  145 (222)
Q Consensus        98 ~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  145 (222)
                      ++...   .... +......+...|+|+||+|+.+.+-.+...++....
T Consensus       462 DAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  462 DAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             chhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            32222   2222 233345668899999999998865555555555443

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.1e-07  Score=78.64  Aligned_cols=118  Identities=17%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--------EFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      .+.-+|.++.+..+||||...+++--        .+....        ....++++...-+.++.++.++.++||||+..
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            35567999999999999999987621        111111        22246677777788888889999999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |..-....++-.|+++.|||.+.+..-+.+..|.+.    .+.++|.+.++||+|...
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence            998889999999999999999987655666667443    344589999999999764

>cd01855 YqeH YqeH

Probab=98.49  E-value=2.8e-07  Score=70.28  Aligned_cols=56  Identities=23%  Similarity=0.435  Sum_probs=38.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC-------CCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRL-------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ..+++++|.+|+|||||+|+|.+.....       ......+.+.....+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3579999999999999999999754311       1112223444444555543   468999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.49  E-value=6.5e-07  Score=74.35  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh---
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER---   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   73 (222)
                      +++.|+|.|++|||||++.|.+... .....|..+.+.....+.+.+.               +..+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 4444455555555555555442               23678999999542   


Q ss_pred             ----hhhhhHhhhcCCcEEEEEEeCC
Q 027503           74 ----FRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        74 ----~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                          ...-....++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2224556788999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01859 MJ1464 MJ1464

Probab=98.49  E-value=4.6e-07  Score=66.78  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ...+++++|.+++|||||+|+|.+.... ...++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4678999999999999999999976532 2334444443333333433   588999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.46  E-value=2.2e-07  Score=68.43  Aligned_cols=59  Identities=24%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLD------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      -.++|+|++|||||||+|.|.+......      .......+.....+.+++.   ..++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            3589999999999999999998642211      1111112222334445442   369999997653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.45  E-value=1.5e-06  Score=82.95  Aligned_cols=113  Identities=25%  Similarity=0.267  Sum_probs=68.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCC----CCCccee-eEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDS----KPTIGVE-FAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSSY   81 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~   81 (222)
                      .+|+|++|+||||+++.- +-.++-..    ..+.+.. .......+.+   .-.++||+|.-        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            689999999999999885 33443211    1111111 1112233333   34699999921        112233333


Q ss_pred             h---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           82 Y---------RGALGALLVYDITRRA-----TF----ENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        82 ~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      +         +..|++|+++|+.+.-     ..    ..++..+.++.......+||+||+||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            2         3579999999987532     11    2344555666666677899999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.45  E-value=2.9e-06  Score=66.39  Aligned_cols=87  Identities=16%  Similarity=0.038  Sum_probs=53.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCC---CCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLDSK---PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AIT   78 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~   78 (222)
                      ....-|+|+|++++|||+|+|.|++.  .|.....   .|.++-.....+.. +....+.++||+|.....      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence            34566999999999999999999998  6543321   22222222222211 223578999999965321      122


Q ss_pred             HhhhcC--CcEEEEEEeCCCh
Q 027503           79 SSYYRG--ALGALLVYDITRR   97 (222)
Q Consensus        79 ~~~~~~--~d~~i~v~d~~~~   97 (222)
                      ...+..  ++++|+..+.+..
T Consensus        84 ~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          84 LFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHhCEEEEeccCccc
Confidence            233333  7888887776644

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.43  E-value=4.8e-07  Score=73.10  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC---------------CeEEEEEEEeCCChh---
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG---------------DKLIKAQIWDTAGQE---   72 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~Dt~G~~---   72 (222)
                      ..+++.|+|.|+||||||+|.|......+...|..+++-....+.+.               ..+..++++|.+|..   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            56899999999999999999999988877777777777665555443               224578999999843   


Q ss_pred             ----hhhhhhHhhhcCCcEEEEEEeCC
Q 027503           73 ----RFRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        73 ----~~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                          ....-..+.++.+|+++-|+++-
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence                23334556778999999998754

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.41  E-value=5.8e-07  Score=74.06  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=45.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ..++++|+|.|+||||||||+|.+...... .+..|.+.....+..+.   .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCcC
Confidence            357899999999999999999999876333 34446666666677765   37899999954

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8e-06  Score=71.57  Aligned_cols=118  Identities=15%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcc-------------------------------------------e
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-------------------------------------------V   47 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~-------------------------------------------~   47 (222)
                      ...||+|.|..++||||++|+++...+-+......+                                           .
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            467999999999999999999886554333211100                                           0


Q ss_pred             eeEEEEEEECCeE-----EEEEEEeCCChh---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe
Q 027503           48 EFAYRNIRVGDKL-----IKAQIWDTAGQE---RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA  119 (222)
Q Consensus        48 ~~~~~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p  119 (222)
                      ......+..++..     -.+.++|.||.+   ....-...+...+|++|+|..+.+..+..+.. ++...   ...+..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~v---s~~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKV---SEEKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHh---hccCCc
Confidence            0000111111111     156789999955   34444567788999999999998765544422 22222   222344


Q ss_pred             EEEEEeCCCCCCC
Q 027503          120 IVLVGNKSDLTHS  132 (222)
Q Consensus       120 ~ivv~nK~Dl~~~  132 (222)
                      +.|+.||.|....
T Consensus       264 iFIlnnkwDasas  276 (749)
T KOG0448|consen  264 IFILNNKWDASAS  276 (749)
T ss_pred             EEEEechhhhhcc
Confidence            5666788897653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.38  E-value=1.2e-06  Score=64.50  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ....+++++|.+|+|||||+|.|.+... .....+..+....  .+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence            4568899999999999999999998653 2222333333333  23333   2578999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.38  E-value=1.4e-06  Score=63.13  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             HhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503           79 SSYYRGALGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      ...+..+|++++|+|+.++.+..  .+..|+.   ... .++|+++|+||+|+.....  ......+....+..++.+||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            45678999999999999876544  3333333   221 3489999999999864221  12333445556678999999


Q ss_pred             ccCCC
Q 027503          157 MQNLN  161 (222)
Q Consensus       157 ~~~~g  161 (222)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.34  E-value=2.1e-06  Score=64.35  Aligned_cols=91  Identities=14%  Similarity=0.038  Sum_probs=60.4

Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                      .......+.++|++++|+|+.++....+. .+...+     .+.|+++|+||+|+.+...  .....++....+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34456778899999999999876543221 121211     1368999999999864211  111112223344578999


Q ss_pred             ccccCCCHHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i  173 (222)
                      |++++.|++++.+.+...+
T Consensus        82 Sa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999998887765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.33  E-value=5.5e-06  Score=66.93  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             CChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027503           69 AGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE  147 (222)
Q Consensus        69 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (222)
                      ||+- .........+..+|++++|+|+.++.+.... .+...+     .+.|+++|+||+|+.+....  .....+....
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence            5543 2233456778899999999999877543331 111112     14799999999998642111  1111122334


Q ss_pred             CCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          148 GLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       148 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      +.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            56789999999999999998887776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=3.3e-06  Score=68.40  Aligned_cols=144  Identities=20%  Similarity=0.162  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC-------c---CCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD-------E---FRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA   76 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~-------~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   76 (222)
                      +-++|.-+|+..-|||||-.++..-       .   +.+-.    ....++++...++.++-....+-=.|+||+..|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            5688999999999999998876521       1   11111    12245566666666665556677889999988876


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHcC-----
Q 027503           77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE---VNEEEGKILAETEG-----  148 (222)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----  148 (222)
                      ....-....|+.|+|++++|+. ....+..+...+...-  ..++|++||.|+.++.+   .-+-+.+++..+++     
T Consensus       133 NMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~  209 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN  209 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            6666666789999999999863 2232333333333331  34667799999985332   22234566777766     


Q ss_pred             CeEEEEccc
Q 027503          149 LYFMETSAM  157 (222)
Q Consensus       149 ~~~~~~Sa~  157 (222)
                      +|++.-||.
T Consensus       210 ~PvI~GSAL  218 (449)
T KOG0460|consen  210 TPVIRGSAL  218 (449)
T ss_pred             CCeeecchh
Confidence            578887765

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.31  E-value=5e-06  Score=65.05  Aligned_cols=90  Identities=19%  Similarity=0.126  Sum_probs=58.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYY   82 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~   82 (222)
                      ....+|.++|-|.+||||++..|.+...+.......+.......+.+.+  -++.+.|.||.-+       .........
T Consensus        57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava  134 (358)
T KOG1487|consen   57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA  134 (358)
T ss_pred             ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence            3456899999999999999999987654322222222222333344444  5789999999542       122344556


Q ss_pred             cCCcEEEEEEeCCChhhHH
Q 027503           83 RGALGALLVYDITRRATFE  101 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~  101 (222)
                      +.++.+++|.|+..|-+..
T Consensus       135 rtcnli~~vld~~kp~~hk  153 (358)
T KOG1487|consen  135 RTCNLIFIVLDVLKPLSHK  153 (358)
T ss_pred             ecccEEEEEeeccCcccHH
Confidence            7789999999987765433

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=6.5e-07  Score=71.45  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=95.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEE---EEE---------------------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRN---IRV---------------------------   56 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~---~~~---------------------------   56 (222)
                      +-.++|.-+|+..-||||+++++.+-..   -......+++...+.+   +..                           
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            4578999999999999999998765321   0000111111110000   000                           


Q ss_pred             --CCe---EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503           57 --GDK---LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----RATFENTKKWLRELREFCSSCMAIVLVGNKS  127 (222)
Q Consensus        57 --~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  127 (222)
                        .+.   -..+.++|+||++-..+....-..-.|++++++..+.    |++-+.+..  -++-.+    ..++++-||+
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKi  189 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKI  189 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechh
Confidence              010   1367899999998765544444444577888887664    334444332  111122    4688899999


Q ss_pred             CCCCCCCC--CHHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          128 DLTHSREV--NEEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       128 Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      |+..+...  ..+....|...   .+.|++++||.-..+++-+.++++..+-
T Consensus       190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            99864321  12233444443   3579999999999999999999887753

>PRK01889 GTPase RsgA; Reviewed

Probab=98.28  E-value=3.6e-06  Score=70.38  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNL  160 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  160 (222)
                      ..++|.+++|++++.+.....+..++..+....   +|.+||+||+||.+..   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~---i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESG---AEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC---CCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            578999999999975445455666665555543   6778899999997531   112222222 356789999999999


Q ss_pred             CHHHHHHHHH
Q 027503          161 NVEDAFLQMI  170 (222)
Q Consensus       161 gi~~~~~~l~  170 (222)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888774

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.28  E-value=6.2e-06  Score=64.61  Aligned_cols=120  Identities=14%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFC-SSCMAIVLVGNKSD  128 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D  128 (222)
                      .+.|+.+|.+|+...+.-|...+.+.-++|+|+..++-.          .+.+.-.++..++... -.-+.+|+++||-|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            367899999999988888999999999999999877421          1122222333333322 12367899999999


Q ss_pred             CCCCC----------------------------CCCHH--HHHHHHHH-------------cCCeEEEEccccCCCHHHH
Q 027503          129 LTHSR----------------------------EVNEE--EGKILAET-------------EGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus       129 l~~~~----------------------------~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~~  165 (222)
                      +..+.                            .....  .++-|...             +-+.+..+-|.+.++|+.+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            84210                            00011  11111111             1255677889999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 027503          166 FLQMINQIHQTTIQ  179 (222)
Q Consensus       166 ~~~l~~~i~~~~~~  179 (222)
                      |+...+-+..++.+
T Consensus       361 FnDcrdiIqr~hlr  374 (379)
T KOG0099|consen  361 FNDCRDIIQRMHLR  374 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888777766543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.26  E-value=8.3e-06  Score=67.06  Aligned_cols=94  Identities=20%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             EEEEEEeCCChhhhh--------hhhH---hh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           61 IKAQIWDTAGQERFR--------AITS---SY-YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~--------~~~~---~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      +.+.++||||.....        .+..   .. -...+..++|+|++.+.  ..+.. ...+....   .+.-+|+||.|
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlTKlD  270 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILTKLD  270 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEECCC
Confidence            578999999954321        1111   11 12467889999998643  22221 12222211   24467889999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503          129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ....    .-.+.......++|+..++  +|++++++-
T Consensus       271 ~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        271 GTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            5432    2234455566689988887  788886654

>PRK13796 GTPase YqeH; Provisional

Probab=98.26  E-value=8.8e-06  Score=68.30  Aligned_cols=92  Identities=23%  Similarity=0.295  Sum_probs=60.9

Q ss_pred             hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHc
Q 027503           73 RFRAITSSYYRGAL-GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETE  147 (222)
Q Consensus        73 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~  147 (222)
                      .|...... +..++ .+++|+|+.+..     ..|...+.+... +.|+++|+||+|+.. .....+....+    +...
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence            44443333 34444 889999987743     224444544433 478999999999965 23333333333    4555


Q ss_pred             CC---eEEEEccccCCCHHHHHHHHHHH
Q 027503          148 GL---YFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       148 ~~---~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999988664

>PRK12288 GTPase RsgA; Reviewed

Probab=98.25  E-value=2.4e-06  Score=71.01  Aligned_cols=58  Identities=22%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCC-CC-----CcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDS-KP-----TIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      ++|+|.+|||||||+|+|++....... .+     ...++.....+.+.+.   ..++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            789999999999999999976532211 11     1112222233344332   2599999976543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=8.7e-06  Score=63.40  Aligned_cols=164  Identities=18%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             eeEEEEEcCCCC--ChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           12 LFKAVMIGDSAV--GKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        12 ~~kI~llG~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ..-++++|..|+  ||.+|+.+|....|.........+.+...++.-......+.+.-.+-.+++.-..........+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            345789999998  999999999887776554333333333222222111122233222222222222233334557899


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCC--------------C--------------------
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSR--------------E--------------------  134 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~--------------~--------------------  134 (222)
                      ++||.+....+..+..|+.--....   .- .+.++||+|....-              .                    
T Consensus        84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            9999999999999999975321110   11 24558888854110              0                    


Q ss_pred             ----------CCHHHHHHHHHHcCCeEEEEccc------------cCCCHHHHHHHHHHHHHHhhh
Q 027503          135 ----------VNEEEGKILAETEGLYFMETSAM------------QNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       135 ----------~~~~~~~~~~~~~~~~~~~~Sa~------------~~~gi~~~~~~l~~~i~~~~~  178 (222)
                                .....+.+|+.++++.|++.++.            +..|+..+|.++-..++....
T Consensus       161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi  226 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI  226 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence                      11223467888899999998884            245788888777766665443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.25  E-value=7.3e-06  Score=60.63  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -+++.|..|+|||||++.++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3689999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.25  E-value=2e-05  Score=66.97  Aligned_cols=65  Identities=14%  Similarity=0.037  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCChhhhhh-h---hHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           60 LIKAQIWDTAGQERFRA-I---TSS--YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      .+.+.|+||+|...... +   ...  .....|-+++|+|+.-+....+   ....+....   .+.-+|+||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~~---~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDSV---DVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhcc---CCcEEEEECccCC
Confidence            35789999999543221 1   111  1235688999999876532222   222232221   3567888999964

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.24  E-value=7.1e-06  Score=67.42  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=88.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCccee-----eEEEEEEE-----------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVE-----FAYRNIRV-----------   56 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~-----~~~~~~~~-----------   56 (222)
                      ..++|+++|...+|||||+-.|.+.+.....                  ...++.+     ..-..+..           
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            6899999999999999999776654432211                  1111111     11000000           


Q ss_pred             ---CCeEEEEEEEeCCChhhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           57 ---GDKLIKAQIWDTAGQERFRA--ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        57 ---~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                         ++...-++|+|.+|++.|-.  ...+.-+..|...+++-++..- .-.....+.....+   .+|+++|++|+|+-.
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL---~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL---HVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh---cCcEEEEEEeeccCc
Confidence               11123578999999998754  3344445678878887766531 01111122222222   289999999999864


Q ss_pred             CCCCCHHHHH---HH--------------------------HHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          132 SREVNEEEGK---IL--------------------------AETEGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       132 ~~~~~~~~~~---~~--------------------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+.. .+-.+   .+                          ..+.-+|+|.+|..+|.++.- +..+...+
T Consensus       288 ANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNll  356 (641)
T KOG0463|consen  288 ANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLL  356 (641)
T ss_pred             HHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhc
Confidence            3322 11111   11                          122236899999999999853 33444433

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.22  E-value=1e-05  Score=65.69  Aligned_cols=101  Identities=16%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             CCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503           68 TAGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET  146 (222)
Q Consensus        68 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (222)
                      .||+- .........+..+|++++|+|+.++.+... ..+...+    . +.|+++|+||+|+.+...  .+....+...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~----~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII----G-NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh----C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            46643 222345667889999999999987754332 1111111    1 489999999999864211  1111222234


Q ss_pred             cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          147 EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       147 ~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      .+.+++.+|+.++.|+.++.+.+.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999998887776543

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.22  E-value=3.5e-06  Score=64.84  Aligned_cols=119  Identities=17%  Similarity=0.210  Sum_probs=75.2

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHcC-CCCeEEEEEeCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFCS-SCMAIVLVGNKSD  128 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D  128 (222)
                      .+.|.+.|.+|+..-+.-|.+.+.+.-.+++++.++.-+          ..++-...+.-+..+.- ...++|+++||.|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            357789999998887888888888777777766654321          12222222333322221 3478999999999


Q ss_pred             CCCCCC----------------CCHHHHHHHHHHc----C------CeEEEEccccCCCHHHHHHHHHHHHHHhhh
Q 027503          129 LTHSRE----------------VNEEEGKILAETE----G------LYFMETSAMQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       129 l~~~~~----------------~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      +.++..                .+.+.+++|....    +      +.-..+-|.+.++|+-+|..+.+.++....
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            875322                2233445554432    1      223456788999999999988888876543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.21  E-value=2.6e-06  Score=70.38  Aligned_cols=96  Identities=17%  Similarity=0.016  Sum_probs=55.2

Q ss_pred             EEEEEEeCCChhhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|......    -...+  ....|.+++|+|+..+...   ......+....   .+--+|+||.|......
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~---~~~a~~f~~~~---~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA---VEQAREFNEAV---GIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH---HHHHHHHHhcC---CCCEEEEeeecCCCCcc
Confidence            4689999999653211    11111  2257889999998765321   11122222211   23467789999753222


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                          .+...+...+.|+..++  +|++++++...
T Consensus       297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ----HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence                33344455688888886  78988776543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.21  E-value=8.7e-06  Score=65.54  Aligned_cols=94  Identities=18%  Similarity=0.032  Sum_probs=55.4

Q ss_pred             EEEEEEeCCChhhhhhhhH-------hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           61 IKAQIWDTAGQERFRAITS-------SYY-----RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      +.+.++||||........-       ...     ...|.+++|+|++...  +.+. ....+.+..   -+.-+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEccC
Confidence            5789999999653222111       111     2378999999997542  2222 222222222   23567789999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503          129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      .....    -.+.......++|+..++  +|++++++-
T Consensus       229 e~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       229 GTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            65422    233444556688888886  788776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.20  E-value=5.4e-05  Score=63.49  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCC----------------CCCCCCcc---eee-----EEEEEEE-CCeEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFR----------------LDSKPTIG---VEF-----AYRNIRV-GDKLIKA   63 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~----------------~~~~~~~~---~~~-----~~~~~~~-~~~~~~~   63 (222)
                      ....+=|.|+|+.-+|||||+++|....+.                +.+.+..+   .+-     .-..+.+ ++..+++
T Consensus        14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV   93 (492)
T PF09547_consen   14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV   93 (492)
T ss_pred             cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence            345677999999999999999998642221                11111111   110     1123334 5667899


Q ss_pred             EEEeCCChh--------h-----------------hhhh----hHhhhc--CCcEEEEEEeCC--C--hhhHHHHHHHHH
Q 027503           64 QIWDTAGQE--------R-----------------FRAI----TSSYYR--GALGALLVYDIT--R--RATFENTKKWLR  108 (222)
Q Consensus        64 ~l~Dt~G~~--------~-----------------~~~~----~~~~~~--~~d~~i~v~d~~--~--~~s~~~~~~~~~  108 (222)
                      +++|+.|.-        +                 |...    +...+.  ..-++++.-|-+  +  ++.|..+.  -.
T Consensus        94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAE--er  171 (492)
T PF09547_consen   94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAE--ER  171 (492)
T ss_pred             EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHH--HH
Confidence            999998811        0                 0000    001111  223455555543  2  23443332  22


Q ss_pred             HHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503          109 ELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus       109 ~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      .+.++..-++|++|++|-.+-  ...-..+++.++...++++++.+++..
T Consensus       172 vI~ELk~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  172 VIEELKEIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHHHHHhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            334444445999999998873  234456777888888999988887653

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.19  E-value=3e-06  Score=68.13  Aligned_cols=59  Identities=20%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE------FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      -.+++|.+|||||||+|+|....      ...........+....-+.+++.+   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            47899999999999999998632      222222333334444555554333   599999976543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.17  E-value=4.5e-06  Score=66.22  Aligned_cols=56  Identities=21%  Similarity=0.172  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      .++|+|++|||||||+|+|.+.......      .....++.....+.+.+    -.++||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            6899999999999999999975432211      11111222222233333    26999999654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.15  E-value=3.9e-06  Score=69.86  Aligned_cols=56  Identities=23%  Similarity=0.182  Sum_probs=34.9

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCC-CCC-----cceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDS-KPT-----IGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      ++|+|++|||||||+|.|++....... .+.     ..++.....+.+.+..   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            899999999999999999975432221 111     1122222334443322   6999999653

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=1.3e-05  Score=63.41  Aligned_cols=61  Identities=21%  Similarity=0.462  Sum_probs=46.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ...|+|+-+|..|.|||||+..|++..|....    .|.+......+.+.-.+..++++++||.|
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            35799999999999999999999998875443    33333334444455577788999999998

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.14  E-value=5.3e-06  Score=69.52  Aligned_cols=56  Identities=23%  Similarity=0.417  Sum_probs=37.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEF------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      .+++|+|.+|||||||+|+|++...      .....|  +.+.....+.+++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            4899999999999999999997542      122223  3333344455533   357999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.10  E-value=5.1e-06  Score=69.73  Aligned_cols=57  Identities=23%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC----CCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL----DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      .+++|+|.+|||||||+|+|+......    ...+..+++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            479999999999999999998643111    11122333444444555442   3799999964

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.04  E-value=4e-05  Score=61.72  Aligned_cols=94  Identities=17%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503           76 AITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                      .+.+....+.|-+++++++.+|+ +...+.+++-.+....   +..+|++||+||.+................+.+++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~g---i~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGG---IEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcC---CcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            34455555678888888888875 5555565555444443   5667779999998754433334556667789999999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.|+.++.+.+...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999998877654

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=0.00017  Score=54.10  Aligned_cols=82  Identities=11%  Similarity=0.150  Sum_probs=45.3

Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      ...+..+++  +++|--.+..... ..+...+......+.|++++.+|...       ......+....+..+++++.  
T Consensus        91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~--  158 (174)
T PRK13695         91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP--  158 (174)
T ss_pred             HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc--
Confidence            344556775  6777311111111 23445555544556899999887432       23344555666777777744  


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                       ++-+++.+.+.+.+
T Consensus       159 -~~r~~~~~~~~~~~  172 (174)
T PRK13695        159 -ENRDSLPFEILNRL  172 (174)
T ss_pred             -hhhhhHHHHHHHHH
Confidence             45557777776654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=3.2e-05  Score=72.72  Aligned_cols=111  Identities=26%  Similarity=0.250  Sum_probs=65.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCC--C----CCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHh
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLD--S----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSS   80 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~   80 (222)
                      -+|+|++|+||||++..- +..|+-.  .    ....+  ......-+.+   .-.++||.|..        .....|..
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence            479999999999998652 2222211  1    11111  1111122233   44688998821        22234443


Q ss_pred             h---------hcCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           81 Y---------YRGALGALLVYDITRRA-----TF----ENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        81 ~---------~~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      +         .+..|++|+.+|+.+.-     .-    ..++.-++++........||+|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            3         34679999999987531     11    1233345556666677899999999999875

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=1.8e-05  Score=68.65  Aligned_cols=119  Identities=18%  Similarity=0.165  Sum_probs=82.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-----CCC-----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-----LDS-----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      ...-+|.+.-+-.+||||+-++.+-....     ...           ....++++...-..+.+....+.++||||+..
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            35567888999999999999986532110     000           11123344433344444467899999999998


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      |.--....++-.|+.+++++...+..-+....|.+ +.++.   +|.+.++||+|-...
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry~---vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRYN---VPRICFINKMDRMGA  171 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhcC---CCeEEEEehhhhcCC
Confidence            88878888999999999999887654444455644 34444   899999999996543

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.98  E-value=9.8e-06  Score=68.93  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      .+.|.++|-|||||||+||.|.|...-..+ .|.|-+-...++.+..   .+.|.|+||..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            689999999999999999999998754333 5555555566666654   57899999954

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=8.9e-05  Score=62.07  Aligned_cols=137  Identities=13%  Similarity=0.028  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeE------------------EEEEEE---------CCeEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFA------------------YRNIRV---------GDKLI   61 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~   61 (222)
                      .-.++|+|++|+||||++..|...-...   ......+.+.+                  ...+..         .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3468899999999999999986532110   01000111110                  000100         00124


Q ss_pred             EEEEEeCCChhhhhhh---hHhhh---cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCC-----CCeEEEEEeCCCC
Q 027503           62 KAQIWDTAGQERFRAI---TSSYY---RGALGALLVYDITRRA-TFENTKKWLRELREFCSS-----CMAIVLVGNKSDL  129 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~---~~~~~---~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~-----~~p~ivv~nK~Dl  129 (222)
                      .+.++||+|.......   ....+   ...+-.++|++++... ....+   +..+......     .-+--+|+||.|-
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE  293 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE  293 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence            7889999995533221   11112   2334568888887642 32332   2222222110     0123567799995


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503          130 THSREVNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~S  155 (222)
                      ..    ..-.+..+....+.|+.+++
T Consensus       294 t~----~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        294 AS----NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             CC----CccHHHHHHHHHCcCeEEEe
Confidence            43    23345566666777766663

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.97  E-value=1.9e-05  Score=58.96  Aligned_cols=136  Identities=16%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeC-CCh---------------------
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDT-AGQ---------------------   71 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------   71 (222)
                      ||+|.|++|+|||||+++++..-... ..+.  .-+....+.-++....|.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987533111 1111  1223333444555556666666 331                     


Q ss_pred             -hhhhh----hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503           72 -ERFRA----ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET  146 (222)
Q Consensus        72 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  146 (222)
                       +.+..    .....+..+|  ++++|---+.-+ ....|...+....+.+.|++.++.+..       .......+...
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~~  147 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKRR  147 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHhC
Confidence             11111    1122224556  677774433111 123455666666666689888876552       11234566667


Q ss_pred             cCCeEEEEccccCCCH
Q 027503          147 EGLYFMETSAMQNLNV  162 (222)
Q Consensus       147 ~~~~~~~~Sa~~~~gi  162 (222)
                      .++.+++++..+.+.+
T Consensus       148 ~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  148 PDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTSEEEE--TTTCCCH
T ss_pred             CCcEEEEeChhHHhhH
Confidence            7789999987776655

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.92  E-value=0.0003  Score=61.21  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             EEEEEEeCCChhhhhhhhH---hhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITS---SYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      ..+.|+||+|.........   ..+.  .....++|++...  +..++...+..+...    .+.-+|+||.|...    
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----
Confidence            5789999999543221100   0011  1234566777654  233433333333322    45678899999532    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          136 NEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..-.+.......++++.+++  +|..|
T Consensus       499 ~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence            23455566667788877763  45555

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.90  E-value=2.5e-05  Score=63.47  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCC-C-----CCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDS-K-----PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      -.++++|++|+|||||+|.|.+....... .     .....+.....+...+.   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            46999999999999999999976543221 1     11112222333444322   258999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.89  E-value=0.00021  Score=53.52  Aligned_cols=83  Identities=16%  Similarity=0.040  Sum_probs=44.4

Q ss_pred             EEEEEEeCCChhhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFR----AITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.++|++|.....    .....+  ....+.+++|++......   ...+...+.....   ...+|.||.|..... 
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~-  155 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG-  155 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence            457889999964221    111111  134899999999865432   2223333332222   246677999965422 


Q ss_pred             CCHHHHHHHHHHcCCeEEE
Q 027503          135 VNEEEGKILAETEGLYFME  153 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~  153 (222)
                         ......+...++|+..
T Consensus       156 ---g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ---GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ---chhhhhHHHHCcCeEe
Confidence               2223355556666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.88  E-value=2.6e-05  Score=63.75  Aligned_cols=57  Identities=25%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCC---c--ceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPT---I--GVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      .++|+|++|+|||||+|.|.+....... .+.   .  ..+.....+..++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            5899999999999999999876533221 110   0  11122233334332   37899999653

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=5.1e-05  Score=63.62  Aligned_cols=92  Identities=13%  Similarity=0.036  Sum_probs=50.1

Q ss_pred             EEEEEEeCCChhhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|......    -...++  ...+.+++|+|++...  .++..+...+..   . ..--+|+||.|-...  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~-~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---I-HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---C-CCCEEEEEcccCCCC--
Confidence            4789999999643211    112222  2356788888875432  233333333332   2 223567899995432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                        .-.+...+...++|+..+  .+|++|.+
T Consensus       393 --~G~iLni~~~~~lPIsyi--t~GQ~VPe  418 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLM--TDGQDVKK  418 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEE--eCCCCCCc
Confidence              234456666677776666  34444443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.82  E-value=9.7e-05  Score=54.00  Aligned_cols=58  Identities=19%  Similarity=0.102  Sum_probs=36.6

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      .+.+.|+||+|...   ....++..+|-++++...+-.+.+.-+. + ..+.      .--++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k-~-~~~~------~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK-A-GIME------IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh-h-hHhh------hcCEEEEeCCC
Confidence            35788999988542   2235888999999999887433333222 1 2222      22377889997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.81  E-value=0.00029  Score=53.94  Aligned_cols=90  Identities=19%  Similarity=0.023  Sum_probs=49.6

Q ss_pred             EEEEEEeCCChhhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.++||+|......    ....+  ....+-+++|++++....  .+.. ...+.....   +--+|+||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~~---~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAFG---IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHSS---TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhccc---CceEEEEeecCCC---
Confidence            4589999999543221    11111  125778899999886532  3222 222223221   2355689999533   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                       ..-....+....+.|+-.++  +|++|
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             -CcccceeHHHHhCCCeEEEE--CCCCh
Confidence             22445667777888876664  44444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00018  Score=61.17  Aligned_cols=139  Identities=14%  Similarity=0.047  Sum_probs=71.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCC---CC-----CCC---------------cceeeEEEE--EE-----ECCeEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRL---DS-----KPT---------------IGVEFAYRN--IR-----VGDKLI   61 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~---~~-----~~~---------------~~~~~~~~~--~~-----~~~~~~   61 (222)
                      .-.|+|+|+.|+||||++..|.+.....   ..     ..+               .++......  ..     ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            4579999999999999999876531100   00     000               000000000  00     000113


Q ss_pred             EEEEEeCCChhhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFR----AITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+.++||+|.....    .....+.  ...+-.++|+|++...  ..+..+...+   ... -+--+|+||.|-..    
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f---~~~-~~~~~I~TKlDEt~----  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAY---QGH-GIHGCIITKVDEAA----  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHh---cCC-CCCEEEEEeeeCCC----
Confidence            67899999954321    1122221  1234577888887432  2333332222   222 23356789999543    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          136 NEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..-.+..+....++++..+  .+|.+|
T Consensus       341 ~~G~~l~~~~~~~lPi~yv--t~Gq~V  365 (420)
T PRK14721        341 SLGIALDAVIRRKLVLHYV--TNGQKV  365 (420)
T ss_pred             CccHHHHHHHHhCCCEEEE--ECCCCc
Confidence            2334556677778887776  456666

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.80  E-value=0.00069  Score=55.81  Aligned_cols=143  Identities=17%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCC-cce-eeEEEEEEECCe----------------------
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPT-IGV-EFAYRNIRVGDK----------------------   59 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~-~~~-~~~~~~~~~~~~----------------------   59 (222)
                      .+|-|-=|||||||++.++...-           .+..... ... ......+...+.                      
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            57788999999999999986432           1111111 000 000011111111                      


Q ss_pred             EEEEEEEeCCChhhhhhhhHhhh--------cCCcEEEEEEeCCChhhHHH-HHH-HHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYY--------RGALGALLVYDITRRATFEN-TKK-WLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      .....++.+.|...-......+.        -..|+++-|+|+.+-..... ... ...++..      .=+||+||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence            13456778877543322222221        24577999999876433222 222 2222222      12788999999


Q ss_pred             CCCCCCCHHHHHHHHHHc--CCeEEEEccccCCCHHHHH
Q 027503          130 THSREVNEEEGKILAETE--GLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~  166 (222)
                      .+...  .+..+......  ..+++.++. .+.+..+++
T Consensus       158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            87553  33334444443  467888776 333343333

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.80  E-value=5.8e-05  Score=64.60  Aligned_cols=84  Identities=19%  Similarity=0.031  Sum_probs=46.4

Q ss_pred             EEEEEeCCChhhhhhh------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRAI------TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+.|+||+|.......      ....+..+|.+++|+|++...   ++......+....   ...-+|+||.|....   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~---  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK---  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc---
Confidence            7899999995543211      112234678999999987753   2222222222221   123567899996432   


Q ss_pred             CHHHHHHHHHHcCCeEEEEc
Q 027503          136 NEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~S  155 (222)
                       .-.+.......+.|+.+++
T Consensus       248 -~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        248 -GGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             -ccHHHHHHHHHCcCEEEEe
Confidence             1234455555666655543

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.79  E-value=0.00043  Score=57.97  Aligned_cols=133  Identities=19%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCC---CCCcceeeEEE---------------EEEE------------CCeEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDS---KPTIGVEFAYR---------------NIRV------------GDKLI   61 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~---~~~~~~~~~~~---------------~~~~------------~~~~~   61 (222)
                      .-.|+++|+.||||||-+-.|...-.....   ...++.|.+..               .+..            .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            446899999999999988876543321111   11111121111               0000            01124


Q ss_pred             EEEEEeCCChhhhhh----hhHhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRA----ITSSYYRG--ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~----~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+.|+||.|...+..    -...++..  ..-+.+|++++..  ..++...+..+....   +. =+++||.|-..    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEcccccC----
Confidence            789999999664433    22333332  3445667777654  355555544444332   22 35579999432    


Q ss_pred             CHHHHHHHHHHcCCeEEEE
Q 027503          136 NEEEGKILAETEGLYFMET  154 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (222)
                      ..-.......+.+.|+..+
T Consensus       353 s~G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYV  371 (407)
T ss_pred             chhHHHHHHHHhCCCeEEE
Confidence            2334445555566665555

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00011  Score=60.96  Aligned_cols=158  Identities=20%  Similarity=0.115  Sum_probs=94.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------------------C------------CCCCCCCcceeeEEEEE
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDE-------------------F------------RLDSKPTIGVEFAYRNI   54 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~-------------------~------------~~~~~~~~~~~~~~~~~   54 (222)
                      ..+.-.-++++++|+..+||||+-..++...                   .            .+......++.....  
T Consensus        73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA--  150 (501)
T KOG0459|consen   73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA--  150 (501)
T ss_pred             cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE--
Confidence            3344567899999999999999876654110                   0            011111122222222  


Q ss_pred             EECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHH--HHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           55 RVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFENT--KKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      .++-...+|++.|+||+..|-.....-...||..++|+++.-.+   .|+.-  ......+...... ...++++||+|-
T Consensus       151 ~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv-~~lVv~vNKMdd  229 (501)
T KOG0459|consen  151 YFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-KHLIVLINKMDD  229 (501)
T ss_pred             EEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc-ceEEEEEEeccC
Confidence            33333467899999999988777767777889999999875432   23221  1122223222222 457788999996


Q ss_pred             CCCCCCCHH-------HHHHHHHHcC------CeEEEEccccCCCHHHHHH
Q 027503          130 THSREVNEE-------EGKILAETEG------LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       130 ~~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ...+. +.+       ....|....+      ..|+++|..+|.++.+-..
T Consensus       230 PtvnW-s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  230 PTVNW-SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CccCc-chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            54222 111       1223333332      4699999999999887653

>TIGR00959 ffh signal recognition particle protein

Probab=97.70  E-value=0.00024  Score=60.67  Aligned_cols=85  Identities=16%  Similarity=0.021  Sum_probs=47.9

Q ss_pred             EEEEEEeCCChhhhhh----hhH--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITS--SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +.+.|+||+|......    ...  ...-..|.+++|+|.....   ++..+...+....   ...-+|.||.|-.... 
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence            4689999999532211    111  1123578889999987542   3333333333222   1235678999953322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                         -.+...+...++|+..+.
T Consensus       256 ---G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       256 ---GAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             ---cHHHHHHHHHCcCEEEEe
Confidence               225666667777766654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.68  E-value=0.0003  Score=60.13  Aligned_cols=85  Identities=15%  Similarity=0.013  Sum_probs=46.6

Q ss_pred             EEEEEEeCCChhhhhh----hhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSS--YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +.+.|+||+|......    ....  ..-..+.+++|+|.....   ++......+....   ...-+|+||.|-.....
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rgG  257 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARGG  257 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCccccc
Confidence            4689999999442211    1111  122567889999986542   3333333333221   12356779999543222


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                          .+.......++|+..+.
T Consensus       258 ----~alsi~~~~~~PI~fig  274 (433)
T PRK10867        258 ----AALSIRAVTGKPIKFIG  274 (433)
T ss_pred             ----HHHHHHHHHCcCEEEEe
Confidence                25566666777766654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.67  E-value=0.00052  Score=58.79  Aligned_cols=90  Identities=19%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             EEEEEEeCCChhhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFR----AITSSYYR---GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      ..+.|+||+|.....    .....++.   ...-+++|++.+..  ...+...+..+.   ..+ +--+|+||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~---~~~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS---RLP-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC---CCC-CCEEEEecccccc--
Confidence            478999999964332    12222333   23466777887643  223332222222   211 2357789999533  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          134 EVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                        ..-.+..+....++|+..++  +|.+|
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence              22356677778888877763  55554

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.64  E-value=0.00073  Score=52.45  Aligned_cols=48  Identities=19%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      +....++|.+|+|+|.+- .++..+.+......+.. - .++.+|+||.|-
T Consensus       150 Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg-~-k~i~~V~NKv~e  197 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG-I-KRIFVVLNKVDE  197 (255)
T ss_pred             cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC-C-ceEEEEEeeccc
Confidence            345678899999999874 34444444333333322 1 679999999994

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.63  E-value=0.00044  Score=47.12  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             EEEEc-CCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           15 AVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        15 I~llG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      |++.| ..|+||||+...|...-. ....+..-.+       .+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~~d-------~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLLID-------LDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEEEe-------CCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56777 568999999877653221 1111211111       1111 568899999865332  3367788999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 027503           94 ITRRATFENTKKWLR  108 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~  108 (222)
                      .+ ..++..+..++.
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 345555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.0005  Score=62.41  Aligned_cols=93  Identities=11%  Similarity=-0.036  Sum_probs=50.0

Q ss_pred             EEEEEEeCCChhhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFR----AITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|.....    ......  ....+-.++|+|.+..  .+.+......+......+ +--+|+||.|-...  
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~~--  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEATH--  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCCC--
Confidence            368999999933211    111111  2245567888888753  223332223333221111 23567899995432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                        .-.+..+....++|+.++  .+|++|
T Consensus       339 --~G~iL~i~~~~~lPI~yi--t~GQ~V  362 (767)
T PRK14723        339 --LGPALDTVIRHRLPVHYV--STGQKV  362 (767)
T ss_pred             --ccHHHHHHHHHCCCeEEE--ecCCCC
Confidence              234556667778887776  456666

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.61  E-value=0.00045  Score=47.44  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             EEEEc-CCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           15 AVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        15 I~llG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      |+++| ..|+||||+.-.|...-.......+.-.+....   ...   .+.++|+|+....  .....+..+|.++++++
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~~---D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FGD---DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CCC---CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            34444 678999998876643221110111111111111   011   6789999986532  34457788999999997


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCC-CCeEEEEEeC
Q 027503           94 ITRRATFENTKKWLRELREFCSS-CMAIVLVGNK  126 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK  126 (222)
                      .+. .++..+..++..+...... ...+.+|+|+
T Consensus        74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            764 4566667777766665433 3466677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00019  Score=61.28  Aligned_cols=114  Identities=21%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC------------CCCC--CCcceeeEEEEEEE----------------CCeEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR------------LDSK--PTIGVEFAYRNIRV----------------GDKLIK   62 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~~~~~~   62 (222)
                      -++.++.+..-|||||-..|....-.            ....  ...++++...-++.                ++..+-
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            45788999999999999998743211            1110  01122222222221                244577


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +.++|.||+..|.+.....++-.|+.++|+|..++--.+.-..+.+.+.+.    +.-++++||+|-.
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhHH
Confidence            889999999999999999999999999999998865433323333444443    3345668999953

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.00063  Score=45.14  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-hHhhhcCCcEEEEEEe
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI-TSSYYRGALGALLVYD   93 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d   93 (222)
                      +++.|..|+|||++...+...-..... ..         .-++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK-RV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC-eE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887653321111 11         1111    6789999986532221 2556678899999998


Q ss_pred             CCCh
Q 027503           94 ITRR   97 (222)
Q Consensus        94 ~~~~   97 (222)
                      .+..
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7754

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.59  E-value=0.00031  Score=58.76  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=48.7

Q ss_pred             EEEEEEeCCChhhhhh----hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|......    ....+..  ..+.+++|+++..  ...++...+..   +... .+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l-~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEI-PIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcC-CCCEEEEEcccCCC---
Confidence            5789999999643221    1122222  3466667776532  23333333332   2222 23356789999543   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                       ..-.+...+...+.|+..++  +|++|.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp  382 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT--DGQNIT  382 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence             23345566677788876664  344444

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.57  E-value=0.00054  Score=41.05  Aligned_cols=47  Identities=19%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           81 YYRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      .-+-.+++++++|++.  +.+.++-...+..++..... .|+++|.||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~-~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN-KPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC-CCEEEEEeccC
Confidence            3345689999999986  45666666677888877754 89999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.57  E-value=0.00011  Score=59.08  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=39.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----CCCCcceeeEEEE-EEECCeEEEEEEEeCCCh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----SKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~   71 (222)
                      ...++++|+|.||+|||||+|++........    ..+..|++..... +.+.+.+ .+.++||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            4678999999999999999998765433211    1122233333322 4454444 4789999993

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.57  E-value=6.7e-05  Score=62.12  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      -...+++.|+|-|++||||+||+|..+...... ++.|++.....+.++.   .+.|.|.||.-
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgiv  308 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGIV  308 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCcee
Confidence            356799999999999999999999987653332 4455566666666654   67899999943

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.54  E-value=0.0023  Score=55.52  Aligned_cols=89  Identities=12%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             EEEEEeCCChhhhhh---hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRA---ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+.++||+|......   .....+..   ..-.++|+|.....  ..+...   +..+... ...-+|+||.|-..    
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i---~~~f~~~-~~~g~IlTKlDet~----  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEV---VQAYRGP-GLAGCILTKLDEAA----  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHH---HHHhccC-CCCEEEEeCCCCcc----
Confidence            578999999432221   11112221   23367888876432  222222   2222222 23456789999532    


Q ss_pred             CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          136 NEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..-.+.......++++.++  .+|++|
T Consensus       406 ~~G~~l~i~~~~~lPI~yv--t~GQ~V  430 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYV--SNGQRV  430 (484)
T ss_pred             cchHHHHHHHHHCCCeEEE--ecCCCC
Confidence            2344566677778887776  456666

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.0007  Score=57.43  Aligned_cols=134  Identities=21%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc-CCCC---------C--C----------CCcceeeEEEE-E-----EECCeEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE-FRLD---------S--K----------PTIGVEFAYRN-I-----RVGDKLIKA   63 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~-~~~~---------~--~----------~~~~~~~~~~~-~-----~~~~~~~~~   63 (222)
                      ..-++|+|++||||||++..|.... ....         .  .          ...+....... .     ........+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3458899999999999999886421 0000         0  0          00011111000 0     001123477


Q ss_pred             EEEeCCChhhhh----hhhHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           64 QIWDTAGQERFR----AITSSYYR-----GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        64 ~l~Dt~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      .++||+|.....    ..+..++.     ..+-.++|+|++...  .++......+   ... -+--+|+||.|-...  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f---~~~-~~~glIlTKLDEt~~--  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY---ESL-NYRRILLTKLDEADF--  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh---cCC-CCCEEEEEcccCCCC--
Confidence            899999954211    11122222     234678888887653  2322222222   222 233567899995432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                        .-.+.......+.|+..++
T Consensus       375 --~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              2235566667777766663

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.51  E-value=0.00046  Score=49.83  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             EEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC
Q 027503           16 VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        16 ~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                      ..-|..|+|||++.-.+...-. .....+.-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3456889999998776543211 0111111111110   000011577999999853  333457788999999999886


Q ss_pred             ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           96 RRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        96 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      . .++..+...+..+.... ...++.+|+|+++-
T Consensus        78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            4 44555444455554433 23567889999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.50  E-value=0.00095  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -.++|.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999987654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.49  E-value=0.00026  Score=53.41  Aligned_cols=21  Identities=19%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|.|..|||||||+++++.
T Consensus         2 v~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            368999999999999999984

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.48  E-value=0.00046  Score=52.66  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+-++|+|+.||||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            46689999999999999998764

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.47  E-value=0.0033  Score=51.83  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..-.+|.|.-|||||||+|+++..
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            345788899999999999999854

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.0024  Score=54.01  Aligned_cols=90  Identities=13%  Similarity=-0.014  Sum_probs=50.0

Q ss_pred             EEEEEEeCCChhhhhh----hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      ..+.++||+|......    -...++..   .+-.++|+|++...  ..+...+   ..+... -+--+|+||.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~---~~~~~~-~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF---HQFSPF-SYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH---HHhcCC-CCCEEEEEeccCCC--
Confidence            5789999999543221    11222222   22578899988752  3333332   333222 23456789999543  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          134 EVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                        ..-.+..+....+.|+..+  .+|++|
T Consensus       327 --~~G~~l~~~~~~~~Pi~yi--t~Gq~v  351 (388)
T PRK12723        327 --CVGNLISLIYEMRKEVSYV--TDGQIV  351 (388)
T ss_pred             --cchHHHHHHHHHCCCEEEE--eCCCCC
Confidence              2234456666677777666  355555

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.45  E-value=0.00084  Score=53.94  Aligned_cols=138  Identities=17%  Similarity=0.127  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC---------CCC------------CCCcceeeEEEEEE----------E-CCeE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR---------LDS------------KPTIGVEFAYRNIR----------V-GDKL   60 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~---------~~~------------~~~~~~~~~~~~~~----------~-~~~~   60 (222)
                      -+++++|++|+||||++..+...-..         ...            ....+...... ..          . ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999999877542110         000            00011111100 00          0 0113


Q ss_pred             EEEEEEeCCChhhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +.+.++||+|......    .+..++  ...+-+++|+|++...  .++..+...+..   . .+--+|+||.|-...  
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~-~~~~~I~TKlDet~~--  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---I-HIDGIVFTKFDETAS--  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---C-CCCEEEEEeecCCCC--
Confidence            5789999999653211    111222  2456788999986431  233333333332   2 234567899995432  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503          135 VNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                        .-.+...+...+.|+..++  +|+++.
T Consensus       227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        227 --SGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence              2344566666777776663  455544

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.33  E-value=0.0046  Score=51.52  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.+|.|--|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4788899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.30  E-value=0.00021  Score=50.04  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00023  Score=53.63  Aligned_cols=23  Identities=26%  Similarity=0.627  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.25  E-value=0.00026  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=97.21  E-value=0.00029  Score=52.81  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +|+|+|++|||||||++.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.17  E-value=0.0048  Score=46.34  Aligned_cols=84  Identities=25%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE  139 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  139 (222)
                      .+.+.++|+|+...  ......+..+|.+++++..+. .+...+..++..+...   +.|+.+|+|++|....   ...+
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~  162 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE  162 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence            45889999997542  234456788999999999874 3556666666666544   3678899999996431   3455


Q ss_pred             HHHHHHHcCCeEE
Q 027503          140 GKILAETEGLYFM  152 (222)
Q Consensus       140 ~~~~~~~~~~~~~  152 (222)
                      ..++....+++++
T Consensus       163 ~~~~~~~~~~~vl  175 (179)
T cd03110         163 IEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHcCCCeE
Confidence            6777777787764

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.16  E-value=0.00032  Score=50.52  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+++|++|||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.16  E-value=0.015  Score=43.32  Aligned_cols=84  Identities=12%  Similarity=0.012  Sum_probs=51.8

Q ss_pred             EEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 027503           62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK  141 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  141 (222)
                      .+.++|+|+....  .....+..+|.+|++++.+. .++..+..++..+....  .....+|+|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence            6889999985432  24455788999999998775 34555555555555422  2346788999985421  2222234


Q ss_pred             HHHHHcCCeEE
Q 027503          142 ILAETEGLYFM  152 (222)
Q Consensus       142 ~~~~~~~~~~~  152 (222)
                      .+....+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.15  E-value=0.00067  Score=41.61  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..+|.|+.|||||||+.++.--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999987643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.14  E-value=0.013  Score=42.45  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999997754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.08  E-value=0.00066  Score=52.15  Aligned_cols=24  Identities=42%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      .++|+|++|||||||++++.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            489999999999999999876553

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.0014  Score=54.47  Aligned_cols=46  Identities=17%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             eEEEEEEEeCCChhhhh-hhh-----HhhhcCCcEEEEEEeCCChhhHHHHH
Q 027503           59 KLIKAQIWDTAGQERFR-AIT-----SSYYRGALGALLVYDITRRATFENTK  104 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~-~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~  104 (222)
                      ..+.+.|+||+|....+ .+.     -.-.-..|-+|+|.|++-+++-+...
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence            34789999999954322 111     12233679999999999876555433

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.04  E-value=0.00066  Score=42.74  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.03  E-value=0.015  Score=43.81  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68999999999999999988754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.01  E-value=0.00041  Score=62.31  Aligned_cols=123  Identities=16%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCc-------------c---------------------------
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-------------G---------------------------   46 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~-------------~---------------------------   46 (222)
                      ..+-..+.|+++|..++||||.++.+.+..|.+-.....             .                           
T Consensus        24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI  103 (657)
T KOG0446|consen   24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI  103 (657)
T ss_pred             CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence            345567899999999999999999999866532210000             0                           


Q ss_pred             -------------eeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027503           47 -------------VEFAYRNIRVG-DKLIKAQIWDTAGQE-------------RFRAITSSYYRGALGALLVYDITRRAT   99 (222)
Q Consensus        47 -------------~~~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s   99 (222)
                                   +......+.+. -.-..++++|.||..             ....+...|+...+.+|+.+...+.+ 
T Consensus       104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-  182 (657)
T KOG0446|consen  104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-  182 (657)
T ss_pred             HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence                         00000000110 011367889999932             34567888999999999988876621 


Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503          100 FENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                       -..-.++...++....+..++-|++|.|+.+
T Consensus       183 -~ats~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  183 -IATSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             -hhcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence             1113466777777766677888888888865

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.98  E-value=0.00045  Score=51.20  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.96  E-value=0.00064  Score=52.89  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++|+|++|||||||+|-+-+-.
T Consensus        34 vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            7999999999999999987644

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.96  E-value=0.042  Score=40.85  Aligned_cols=138  Identities=7%  Similarity=0.074  Sum_probs=93.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      ...|+++|..+.++..|..++......          .. ..+....     .+-+ |..      ....-+..|.++|+
T Consensus        15 ~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-----sLPL-p~e------~~~lRprIDlIVFv   71 (176)
T PF11111_consen   15 TATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-----SLPL-PSE------NNNLRPRIDLIVFV   71 (176)
T ss_pred             eeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-----cCCC-ccc------ccCCCceeEEEEEE
Confidence            567999999999999999999852210          11 1111110     0000 111      11223577999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      +|.....++..++.-+..+....-.+ .+.++.+-..-.+...+...+...++..++++++.+.-.+.++...+=+.|.+
T Consensus        72 inl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~  150 (176)
T PF11111_consen   72 INLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR  150 (176)
T ss_pred             EecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence            99999999988887666653322222 36677777776666788899999999999999999988888776665555555


Q ss_pred             HH
Q 027503          172 QI  173 (222)
Q Consensus       172 ~i  173 (222)
                      .+
T Consensus       151 ~l  152 (176)
T PF11111_consen  151 ML  152 (176)
T ss_pred             HH
Confidence            43

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.0007  Score=53.06  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      |+|+|++|||||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987644

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.93  E-value=0.0025  Score=47.79  Aligned_cols=44  Identities=23%  Similarity=0.056  Sum_probs=28.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |++++|+|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999988743322 22222221 2233489999999999965

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.91  E-value=0.00083  Score=48.04  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999987754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.91  E-value=0.019  Score=45.69  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +++|+|++|+|||||++.+.+..
T Consensus        18 r~~I~G~~G~GKTTLlr~I~n~l   40 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAI   40 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            78999999999999999988754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.89  E-value=0.00081  Score=52.20  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=36.4

Q ss_pred             EEEEEeCCChhhhh----hhh--HhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           62 KAQIWDTAGQERFR----AIT--SSYYRGALGALLVYDIT------RRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~----~~~--~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      ...++|+||+.++.    .++  ..++...|.=+.++.+.      +|..|-.  ..+..+.....-..|.+=|+.|+|+
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~Dl  175 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKADL  175 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhHH
Confidence            56799999976532    221  23344455544444433      4544433  2222233322233778888899998


Q ss_pred             CC
Q 027503          130 TH  131 (222)
Q Consensus       130 ~~  131 (222)
                      ..
T Consensus       176 ~~  177 (290)
T KOG1533|consen  176 LK  177 (290)
T ss_pred             HH
Confidence            53

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.88  E-value=0.011  Score=46.11  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=64.4

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE  138 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  138 (222)
                      +.|.|+|+.|...  ......+..+|.+|+=+-.+..+.-+.  ...|+..+.......+|+-|+.|++.-.. ......
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence            5789999998653  224555668999888776664333222  23455555554556699999999987321 111112


Q ss_pred             HHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503          139 EGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       139 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ...++.  .++|++.+.......+.++|.
T Consensus       161 ~~~e~~--~~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQL--ESLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHH--hcCCccccccccHHHHHHHHH
Confidence            222332  258899988888887777775

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK01889 GTPase RsgA; Reviewed

Probab=96.87  E-value=0.0015  Score=54.73  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +++|+|.+|+|||||+|.|.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            78999999999999999998754

>PRK06217 hypothetical protein; Validated

Probab=96.86  E-value=0.00094  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>PRK04195 replication factor C large subunit; Provisional

Probab=96.84  E-value=0.024  Score=49.61  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||++++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.84  E-value=0.00092  Score=46.99  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

...

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.82  E-value=0.0061  Score=43.56  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999988653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.81  E-value=0.0012  Score=46.50  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR   38 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~   38 (222)
                      -.++|+|++|+|||++++.+......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0017  Score=51.14  Aligned_cols=89  Identities=17%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhc--
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR--   83 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--   83 (222)
                      ........|++.|..+.  |++|++.+.+.-.. ..++...++.+....-++ .+-...+|+.+|......+..--+.  
T Consensus        40 ~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~  116 (363)
T KOG3929|consen   40 IAEKFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGD  116 (363)
T ss_pred             hhccceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCccccc
Confidence            34456788999998765  99999988776433 346666666654433333 3334568999887654443322222  


Q ss_pred             --CCcEEEEEEeCCChh
Q 027503           84 --GALGALLVYDITRRA   98 (222)
Q Consensus        84 --~~d~~i~v~d~~~~~   98 (222)
                        ..-.+|++.|++++.
T Consensus       117 ~l~~~slIL~LDls~p~  133 (363)
T KOG3929|consen  117 TLRTFSLILVLDLSKPN  133 (363)
T ss_pred             chhhhhheeeeecCChH
Confidence              224578999999875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.80  E-value=0.0012  Score=46.61  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      |+|.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999987643

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK03839 putative kinase; Provisional

Probab=96.79  E-value=0.0011  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +|+|+|.+||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998654

>TIGR00235 udk uridine kinase

Probab=96.78  E-value=0.0016  Score=50.29  Aligned_cols=27  Identities=15%  Similarity=0.079  Sum_probs=22.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ++...-|+|.|++|||||||++.|.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            344567999999999999999999764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.78  E-value=0.0012  Score=47.54  Aligned_cols=21  Identities=48%  Similarity=0.711  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.77  E-value=0.0097  Score=48.27  Aligned_cols=104  Identities=18%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------------
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------------   72 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------------   72 (222)
                      ..+...++|+|++|.|||+++++|....- ......             ...+.+..+.+|..-                
T Consensus        58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   58 RHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             ccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            34667899999999999999999987442 221111             112244555555411                


Q ss_pred             --------hhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHc-CCCCeEEEEEeC
Q 027503           73 --------RFRAITSSYYRGALGALLVYDITRR---ATFENTKKWLRELREFC-SSCMAIVLVGNK  126 (222)
Q Consensus        73 --------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK  126 (222)
                              .........++...+=++++|--+-   .+...-+..+..++... ..++|++.||+.
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                    1122334667777888888885532   13334455666666654 466999999864

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.76  E-value=0.0069  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      |+|.|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987644

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0053  Score=46.09  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=26.5

Q ss_pred             HHHHHHHHHcCCeEE--EEccccCCCHHHHHHHHHHHHHHh
Q 027503          138 EEGKILAETEGLYFM--ETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ..++.++.+..+-.|  ++||.+.+=+.|++..+.+.+.+-
T Consensus       162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            334555555555444  499999999999997666665543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.73  E-value=0.021  Score=46.45  Aligned_cols=74  Identities=22%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC--CcEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG--ALGALLV   91 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v   91 (222)
                      .|+|.|.+||||||+++.|-...+                          ..+|......+..+.......  .+.+.++
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av~   61 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAVV   61 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence            689999999999999999942211                          112333323233332222221  3557788


Q ss_pred             EeCCChhhHHHHHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREF  113 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~  113 (222)
                      +|+.+...+......+..+...
T Consensus        62 iD~r~~~~~~~~~~~~~~L~~~   83 (288)
T PRK05416         62 IDVRSRPFFDDLPEALDELRER   83 (288)
T ss_pred             EccCchhhHHHHHHHHHHHHHc
Confidence            8887765334445555555543

>PRK14530 adenylate kinase; Provisional

Probab=96.73  E-value=0.0013  Score=51.06  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999998853

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.016  Score=49.34  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +..-+|+|+|+.|+|||||+.-|++..
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKL  637 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCC
Confidence            456789999999999999999988754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.71  E-value=0.0014  Score=51.64  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+..++++|+|++|||||+|+..|+..
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999998754

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.70  E-value=0.0014  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.70  E-value=0.0015  Score=49.48  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999996543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.70  E-value=0.0016  Score=47.10  Aligned_cols=23  Identities=17%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .|+|+|+.|||||||++.|+..-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.68  E-value=0.017  Score=50.77  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999988753

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.68  E-value=0.0077  Score=49.81  Aligned_cols=96  Identities=21%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             EEeCCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 027503           65 IWDTAGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL  143 (222)
Q Consensus        65 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  143 (222)
                      +-+.||+. .+.......+..+|+++-|+|+.+|.+...     ..+.+.... .|.++|+||+|+... .....-.+.+
T Consensus        14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~-k~~i~vlNK~DL~~~-~~~~~W~~~~   86 (322)
T COG1161          14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKE-KPKLLVLNKADLAPK-EVTKKWKKYF   86 (322)
T ss_pred             ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHcc-CCcEEEEehhhcCCH-HHHHHHHHHH
Confidence            33446644 566677888999999999999999875433     223333333 455999999999863 3334445555


Q ss_pred             HHHcCCeEEEEccccCCCHHHHHH
Q 027503          144 AETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       144 ~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ....+...+.+++..+.+...+..
T Consensus        87 ~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          87 KKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HhcCCCccEEEEeecccCccchHH
Confidence            566667677888887776655553

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.67  E-value=0.00064  Score=56.56  Aligned_cols=56  Identities=20%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      ..+-|.++|-|++||||+||.|-...+.... |..|.+-....+.+-.   ++.|+|+||
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.67  E-value=0.0016  Score=44.66  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027503           14 KAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~   33 (222)
                      .++|+|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.65  E-value=0.0016  Score=48.94  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.65  E-value=0.0035  Score=48.39  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4455888999999999999999754

>PRK08233 hypothetical protein; Provisional

Probab=96.63  E-value=0.002  Score=48.33  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999998764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.62  E-value=0.0024  Score=47.95  Aligned_cols=25  Identities=36%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      =+++|+|++|+|||||+|-+.+=..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3689999999999999998876444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.61  E-value=0.0017  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.61  E-value=0.0017  Score=48.98  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|+|++||||||+++.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.61  E-value=0.009  Score=49.59  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..+|+|.|++|||||||++.|+..-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            5689999999999999999987533

>PRK13949 shikimate kinase; Provisional

Probab=96.61  E-value=0.002  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987643

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.60  E-value=0.0021  Score=49.59  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..+.|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999998764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.60  E-value=0.043  Score=40.61  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14532 adenylate kinase; Provisional

Probab=96.60  E-value=0.0018  Score=49.10  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      +|+|+|+|||||||+.+.|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.58  E-value=0.0021  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -.++|+|++|||||||++.|.+..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.55  E-value=0.0063  Score=47.39  Aligned_cols=24  Identities=29%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.|+|.|++|+|||+|++.+...
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14531 adenylate kinase; Provisional

Probab=96.54  E-value=0.0021  Score=48.63  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+|+++|+|||||||+.+.|..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998854

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.54  E-value=0.03  Score=48.14  Aligned_cols=51  Identities=25%  Similarity=0.340  Sum_probs=35.1

Q ss_pred             hhhHhhhcCCcEEEEEEe-CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           76 AITSSYYRGALGALLVYD-ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      .+....+++++++|+  | ++..-+..++..++..++.....+..+|++-.|.+
T Consensus       150 EIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         150 EILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            466778888886554  3 22223556777788888888888888888877754

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.53  E-value=0.0023  Score=48.57  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..-|+|+|++|||||||++.|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3458999999999999999998653

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.52  E-value=0.016  Score=48.30  Aligned_cols=25  Identities=12%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..+|+|.|++|||||||++.|++.-
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHccc
Confidence            4679999999999999999998643

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.52  E-value=0.0028  Score=47.46  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ...-+.|+|.+|||||||++++....
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHH
Confidence            34468999999999999999998653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.52  E-value=0.0021  Score=50.03  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|+|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            389999999999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.51  E-value=0.0025  Score=47.98  Aligned_cols=22  Identities=32%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.++|+|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            3689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.51  E-value=0.0024  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999987643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-59
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-59
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-58
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-58
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-58
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-58
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		8e-58
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-57
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		5e-56
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-52
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-52
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-51
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-46
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		8e-46
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-45
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-44
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-44
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-44
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-43
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-43
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-43
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-43
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-42
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-42
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-42
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-42
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-42
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-41
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-41
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-41
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-41
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-41
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-40
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-39
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-39
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-38
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		5e-38
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-38
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-38
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		9e-38
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-37
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-37
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-37
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-37
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-36
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-36
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-36
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-36
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-36
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-35
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-35
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-34
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-34
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-34
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-34
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-34
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		8e-34
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		8e-34
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-33
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-33
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-33
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-33
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-33
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-33
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-33
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		8e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-32
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-32
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-31
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-31
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-31
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-31
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-31
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		9e-31
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-31
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-30
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-30
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-30
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-30
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-30
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		9e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-28
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-26
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		8e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		8e-26
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-24
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-24
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-24
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-23
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-22
1byu_A	216	Canine Gdp-Ran Length = 216		5e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-21
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-21
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-21
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-21
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-20
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-20
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-20
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-20
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-20
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-20
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-20
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		9e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-19
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-19
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-19
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		5e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		7e-19
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-18
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-17
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-17
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-17
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-17
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-16
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-16
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-16
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-16
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-16
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-16
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-16
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-16
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-16
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		4e-16
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		4e-16
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-15
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-15
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-15
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-15
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		8e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		9e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-14
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-14
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-14
1mh1_A	186	Small G-Protein Length = 186		2e-14
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-14
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-14
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-14
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-14
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-14
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		8e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		9e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		9e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		9e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		9e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-13
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-13
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-13
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-13
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-13
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-13
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-13
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-13
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-13
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-13
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		4e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-13
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-13
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-13
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		6e-13
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		7e-13
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		9e-13
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-12
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-12
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-11
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-10
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-10
2kb0_A	178	Cdc42(T35a) Length = 178		5e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-10
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		7e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		7e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-09
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		9e-09
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-08
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-07
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-07
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		7e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-06
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		5e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		7e-06
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		7e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		9e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		9e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		4e-05
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		5e-05
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		5e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		6e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		6e-05
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		7e-05
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		2e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-04
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		3e-04

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 133/169 (78%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGN
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           KSDL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  223 bits (567), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 141/180 (78%), Gaps = 5/180 (2%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKL 60
           GD YD    YLFK V+IGDS VGKSNLLSRF RDEF L+SK TIGVEFA ++I++  +K+
Sbjct: 1   GDYYD----YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKI 56
Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IKAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT++ +FEN +KWL+ELR+   S + I
Sbjct: 57  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVI 116
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +LVGNKSDL H R +N+ +    A+ E L F+ETSA++  NVE AF Q++N+I+    +K
Sbjct: 117 LLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R ITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK-MND 188
            H R V  +E +  AE   L F+ETSA+ + NVE+AF  ++ +I++   QK +  +  +D
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 189 KTATSNC 195
           ++  +N 
Sbjct: 183 ESPGNNV 189

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 132/169 (78%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAG ER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           KSDL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 131/169 (77%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAG ER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           KSDL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 131/166 (78%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIWDTA
Sbjct: 18  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGNKSDL
Sbjct: 78  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I++
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  219 bits (559), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 132/169 (78%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           +E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAG ER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGNK
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           SDL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I++
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/167 (62%), Positives = 129/167 (77%)
Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAG ER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I LVGNKS
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           DL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I+
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 2/194 (1%)
Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
           + Y  + D LFK V+IGDS VGKSNLLSRF ++EF +DSK TIGVEFA R + +  K IK
Sbjct: 4   EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIK 63
Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
           AQIWDTAGQER+RAITS+YYRGA+GAL+VYDI++ +++EN   WL ELRE     +A+ L
Sbjct: 64  AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123
Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           +GNKSDL H R V  EE K  A+   L F ETSA+ + NV+ AF ++IN I+Q   +  +
Sbjct: 124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 183 CAKMNDKTATSNCN 196
              + D +A  N N
Sbjct: 184 --DLGDSSANGNAN 195

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 130/170 (76%)
Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S+ E+ +++FK V+IG+S VGK+NLLSRF R+EF  DS+ TIGVEF+ R + +G   +KA
Sbjct: 2   SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAG ER+RAITS+YYRGA+GALLV+D+T+  T+   ++WL+EL +   + + ++LV
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 121
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           GNKSDL+ +REV  EE ++ AE  GL F+ETSA+ + NVE AF  ++ +I
Sbjct: 122 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 123/168 (73%)
Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           + DYLFK V+IGDS VGKSNLLSRF  DEF ++SK TIGVEFA R I V +K IKAQIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAG ER+RAITS+YYRGA+GAL+VYDI++ +++EN   WL ELRE     +A+ L+GNKS
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           DL H R V  +E K  A    + F ETSA+ + NV+ AF ++I  I Q
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 128/167 (76%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E+ +++FK V+IG+S VGK+NLLSRF R+EF  DS+ TIGVEF+ R + +G   +KAQIW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAG ER+RAITS+YYRGA+GALLV+D+T+  T+   ++WL+EL +   + + ++LVGNK
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           SDL+ +REV  EE ++ AE  GL F+ETSA+ + NVE AF  ++ +I
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 110/165 (66%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF  R I V  + IK QIWDTAG
Sbjct: 14  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERFRA+T SYYRGA GAL+VYDITRR+T+ +   WL + R   +    I+L+GNK+DL 
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R+V  EE K  AE  GL F+E SA    NVEDAFL+   +I+Q
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  179 bits (455), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 112/165 (67%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R I +  K IK QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  +S M I+L+GNKSDL 
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             REV +EEG+  A   GL FMETSA    NVE+AF+    +I++
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R + +  K IK QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  SS M I+L+GNKSDL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
             R+V  EEG+  A   GL FMETSA    NVE+AF+    +I++  IQ+ L
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR-KIQQGL 190

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 109/165 (66%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF  R I V  + IK QIWDTAG
Sbjct: 29  YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           Q RFRA+T SYYRGA GAL+VYDITRR+T+ +   WL + R   +    I+L+GNK+DL 
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R+V  EE K  AE  GL F+E SA    NVEDAFL+   +I+Q
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 7/203 (3%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           + E DYLFK ++IG+S VGKS LL RF+ D +  D   TIGV+F  + + +  K +K QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR ITSSYYRG+ G ++VYD+T + +F   K WL+E+  + +S +  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K DL   R V  +  K  A+   + F+ETSA+ + NVEDAFL M  QI ++  Q++L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 MNDKTATSNCN-------NLGGG 201
              K    N N       N GGG
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGG 204

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 115/170 (67%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I + +K +K QI
Sbjct: 3   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR ITSSYYRGA G ++VYD+T R +F+N K+W++E+  +    +  +LVGN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           K DL   R V  +EG+ LA++ G+ F+ETSA    NVE AF  M  +I +
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKK 172

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 121/191 (63%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           + E DYLFK ++IG+S VGKS LL RF+ D +  D   TIGV+F  + + +  K +K QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR ITSSYYRG+ G ++VYD+T + +F   K WL+E+  + +S +  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K DL   R V  +  K  A+   + F+ETSA+ + NVEDAFL M  QI ++  Q++L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 MNDKTATSNCN 196
              K    N N
Sbjct: 182 TQKKEDKGNVN 192

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 113/169 (66%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
            E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIW
Sbjct: 4   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR ITSSYYRGA G ++VYD+T + ++ N K+WL+E+  + S  +  +LVGNK
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNK 123
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           SDLT  + V+    K  A++ G+ F+ETSA    NVE AF+ M  +I +
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 113/168 (67%)
Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAGQERFR ITSSYYRGA G ++VYD+T + ++ N K+WL+E+  + S  +  +LVGNKS
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           DLT  + V+    K  A++ G+ F+ETSA    NVE AF+ M  +I +
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 120/180 (66%), Gaps = 9/180 (5%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK ++IGDS VGK+ +L RF+ D F      TIG++F  R I +  K IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA+G +LVYDIT   +F+N + W+R + E  S+ +  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDK 189
              R+V++E G+ LA   G+ FMETSA  N+NVE+AF          T+ + + AKM+ K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF---------TLARDIKAKMDKK 174

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 114/172 (66%)
Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK 
Sbjct: 8   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LV
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           GNK DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK ++IGDS VGK+ +L RF+ D F      TIG++F  R I +  K IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA+G +LVYDIT   +F+N + W+R + E  S+ +  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R+V++E G+ LA   G+ FMETSA  N+NVE+AF  +   I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 114/172 (66%)
Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S + E DYLFK ++IGDS VGK+ LL RFA D +      TIGV+F  R I +  K IK 
Sbjct: 8   SMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LV
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           GNK DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
            E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIW
Sbjct: 1   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
            E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIW
Sbjct: 20  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK
Sbjct: 80  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 139
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 113/169 (66%)
Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           E DYLFK ++IG+S VGKS LL RF+ D +  D   TIGV+F  + + +  K +K QIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAGQERFR ITSSYYRG+ G ++VYD+T + +F   K WL+E+  + +S +  +LVGNK 
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           DL   R V  +  K  A+   + F+ETSA+ + NVEDAFL M  QI ++
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 185

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 111/168 (66%), Gaps = 4/168 (2%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+LFK ++IG +  GKS LL +F  ++F+ DS  TIGVEF  R + VG K +K QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR++T SYYRGA GALLVYDIT R T+ +   WL + R   S  + ++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ----MINQI 173
              REV   E    A+   L F+ETSA+   NVE+AFL+    ++N+I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 108/167 (64%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E  D+LFK ++IG++  GKS LL +F   +F+ DS  TIGVEF  + I VG K +K QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR++T SYYRGA GALLVYDIT R T+     WL + R   S  + I+L GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            DL   REV   E    A+   L F+ETSA+   NVE+AF+Q   +I
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 112/172 (65%)
Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK 
Sbjct: 25  SXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LV
Sbjct: 85  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           GNK DLT  + V+    K  A++ G+ F+ETSA    NVE +F     +I +
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 112/170 (65%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVG 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           K DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 111/169 (65%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
            E D LFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIW
Sbjct: 1   PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 108/167 (64%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E  D+LFK ++IG++  GKS LL +F   +F+ DS  TIGVEF  + I VG K +K QIW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR++T SYYRGA GALLVYDIT R T+     WL + R   S  + I+L GNK
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            DL   REV   E    A+   L F+ETSA+   +VE+AF+Q   +I
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 107/167 (64%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E  D+LFK ++IG++  GKS LL +F   +F+ DS  TIGVEF  + I VG K +K QIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAG ERFR++T SYYRGA GALLVYDIT R T+     WL + R   S  + I+L GNK
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            DL   REV   E    A+   L F+ETSA+   +VE+AF+Q   +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 107/162 (66%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           FR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK DLT  +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
           GD  DE+ D+LFK V++GD++VGK+ ++ RF    F      TIGV+F  + + +  K +
Sbjct: 20  GDP-DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
           K QIWDTAGQERFR IT SYYR A GA+L YDIT+R++F +   W+ ++R++  S +  +
Sbjct: 79  KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138
Query: 122 LVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNVEDAFLQMINQI 173
           L+GNKSDL+  REV+  E + LAE  + L  +ETSA  + NVE+AFL++  ++
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 5/188 (2%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
           G SYD     + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +
Sbjct: 14  GKSYDS----IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV 69
Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
           K Q+WDTAGQERFR IT++YYRGA+G +LVYD+T   TF N K+W + + E  +    ++
Sbjct: 70  KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL 129
Query: 122 LVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
           LVGNKSD+  +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +      
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188
Query: 182 LCAKMNDK 189
           L    N K
Sbjct: 189 LVGVGNGK 196

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 9/179 (5%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + +   DK IK QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R IT++YYRGA+G LL+YDI  + +F   + W  +++ +      ++LVGNK DL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188
              R V  E+G+ LA+  G  F E SA +N+NV+  F ++++ I         C KMN+
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI---------CEKMNE 189

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA+G +LVYDIT   TF N K+W + + E  +    ++LVGNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
           E+ D+LFK V+IG++ VGK+ L+ RF +  F      TIGV+F  + + +  + +K QIW
Sbjct: 21  EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
           DTAGQERFR+IT SYYR A   +L YDIT   +F    +WLRE+ ++ S+ +  VLVGNK
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL----QMINQIHQTTI 178
            DL   REV+++  +  +E + +Y++ETSA ++ NVE  FL    ++I++  Q T+
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 196

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 114/179 (63%), Gaps = 9/179 (5%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + +   +K +K QIWDTA
Sbjct: 21  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      ++LVGNK D+
Sbjct: 81  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188
              R V  E+G++LAE  G  F E SA +N++V  AF ++++ I         C KM+D
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI---------CDKMSD 190

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA G +LVYDIT   TF N K+W + + E  +    ++LVGNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 107/164 (65%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + I   DK IK QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      ++LVGNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R V+ E G+ LA+  G  F E SA  N+NV+  F ++++ I
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+LFK ++IGDS VGKS+LL RFA + F      TIGV+F  R + +  + +K QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR ITS+YYRG  G ++VYD+T   +F N K+WL E+ + C     I LVGNK+D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDD 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
              + V  E+    A   G+   ETSA +N+NVE+ F
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           ERFR IT++YYRGA+G +LVYD+T   TF N K+W + + E  +    ++LVGNKSD+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 106/167 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  +++ + D  +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT + TF   K W++EL+   S  + I L GNK+DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
           R V  EE +  A+   L FMETSA   +NV D FL +  ++ ++  Q
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA G +LVYD+T   TF N K+W + + E  +    ++LVGNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 106/162 (65%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GKS+L+ RF +D+F    + TIG  F  + + V D  +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           + ++   YYRGA  A++V+D+T +A+FE  KKW++EL+   +  M + L GNKSDL  +R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           +V  E+ +  A+  GL+FMETSA    NV++ F ++  ++ +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 102/164 (62%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++GD+ VGKS+++ RF  D F  +  PTIG  F  + ++  ++L K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFRA+   YYRG+  A++VYDIT+  TF   K W+RELR+     + + + GNK DLT  
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           REV E + K  A++    F+ETSA   +N+ + F+++  +I  T
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDT 68
           D  FK +++GDS VGK+ LL RF    F   +   T+G++F  + + V    +K Q+WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128
           AGQERFR++T +YYR A   LL+YD+T +A+F+N + WL E+ E+    +A++L+GNK D
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
             H R V  E+G+ LA+  GL FMETSA   LNV+ AF  +  ++ + +++
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+  + ++IG   VGK++L+ RF  D F    K T+GV+F  + + +  K I+ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERF +ITS+YYR A G +LVYDIT++ TF++  KW++ + ++ S    ++LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              RE+  ++G+  A +  G+ F E SA  N NV++ FL++++ I
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 101/164 (61%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++GD+ VGKS+++ RF  D F  +  PTIG  F  + ++  ++L K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFRA+   YYRG+  A++VYDIT+  TF   K W+RELR+     + + + GNK DLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           REV E + K  A++    F+ETSA   +N+ + F+++  +I  T
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 102/164 (62%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DY FK ++IG+S+VGK++ L R+A D F      T+G++F  + I   DK IK QIWDTA
Sbjct: 6   DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           G ER+R IT++YYRGA G +L YDIT   +F   + W  +++ +      ++LVGNK D 
Sbjct: 66  GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R V+ E G+ LA+  G  F E SA  N+NV+  F ++++ I
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++GD+ VGKS+++ RF +D F  +  PTIG  F  + +  G++L K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RF ++   YYRG+  A++VYDIT++ +F   KKW++EL+E     + + + GNK DL+  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           REV  ++ K  AE+ G   +ETSA   +N+E+ F  +  QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 3/163 (1%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++G++AVGKS+++ RF  ++F  + +PTIG  F  + + + +  +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-- 131
           F ++   YYR A  AL+VYD+T+  +F   + W++EL E  S  + I LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 132 -SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             R+V  EEG+ LAE +GL F ETSA    NV D FL +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 104/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 104/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 100/161 (62%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   TF   K W++EL+   S  + I L GNK+DL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R V  +E +  A+   L FMETSA   +NV + F+ +  ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+S VGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           DE+     K ++IG+S VGKS+LL RF  D F  +   TIGV+F  + I V     K  I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVG 124
           WDTAGQERFR +T SYYRGA G +LVYD+TRR TF     WL EL  +C+ + +   LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 125 NKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           NK D   +REV+  EG   A      F+E SA     V+ AF +++ +I QT
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT 179

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+S VGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+S VGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+S VGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+S VGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   TF   K W++EL+   S  + I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R V  +E +  A+   L FMETSA   +NV + F+ +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TI   F  + + + D  +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   TF   K W++EL+   S  + I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R V  +E +  A+   L FMETSA   +NV + F+ +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 101/163 (61%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L F ETSA  + NV + F  +  ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 102/154 (66%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ I+ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 102/154 (66%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F  T KW+ ++R    S + I+LVGNK+DL+  
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 101/166 (60%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y FK V++G+  VGK++L+ R+  ++F      T+G  F  + + +G K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERF A+   YYR + GA+LVYDIT   +F+  K W++ELR+   + + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
             R V+ +E +  AE+ G     TSA QN  +E+ FL +  ++ +T
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R++  EEG+  A+   + F+ETSA    NV+  F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 102/154 (66%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 81/115 (70%)
Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK QIWDTAGQERFR
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 76  AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
            ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LVGNK DLT
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 101/154 (65%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ I+ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 100/166 (60%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y FK V++G+  VGK++L+ R+  ++F      T+   F  + + +G K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERF A+   YYR + GA+LVYDIT   +F+  K W++ELR+   + + + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
             R V+ +E +  AE+ G     TSA QN  +E+ FL +  ++ +T
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 22/230 (9%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI------- 54
           G   D + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +       
Sbjct: 1   GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 55  -RVGDKLIKA--QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
                K  K   Q+WDTAG ERFR++T++++R A+G LL++D+T + +F N + W+ +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
              +C +   IVL+GNK+DL   REVNE + + LAE  G+ + ETSA    NVE +   +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 170 INQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC 219
           ++ I +   +   C +      T N  N G       +D E  A K+ +C
Sbjct: 180 LDLIMK---RMEKCVEKTQVPDTVNGGNSG------KLDGEKPAEKKCAC 220

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 100/166 (60%)
Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y FK V++G+  VGK++L+ R+  ++F      T+   F  + + +G K +   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERF A+   YYR + GA+LVYDIT   +F+  K W++ELR+   + + + +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
             R V+ +E +  AE+ G     TSA QN  +E+ FL +  ++ +T
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 98/154 (63%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V +G+ AVGK+++++RF  D F  + + TIG++F  + + + +  ++ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT R +FENT KW++++       + I LVGNK+DL   
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V  EEG   A+     F ETSA    N++  F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           R+V+ EEG+  A+   + F+ETSA    NV+  F
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 108/178 (60%), Gaps = 13/178 (7%)
Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-------- 59
           + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60  --LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR--EFCS 115
              +  Q+WDTAGQERFR++T++++R A+G LL++D+T + +F N + W+ +L+   +C 
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +   IVL+GNK+DL   REVNE + + LA+  G+ + ETSA    NVE A   +++ I
Sbjct: 141 NP-DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 110/186 (59%), Gaps = 13/186 (6%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
           G   D + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    +  
Sbjct: 1   GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60  --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
                    +  Q+WDTAG ERFR++T++++R A+G LL++D+T + +F N + W+ +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
              +C +   IVL+GNK+DL   REVNE + + LAE  G+ + ETSA    NVE +   +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 170 INQIHQ 175
           ++ I +
Sbjct: 180 LDLIMK 185

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V+ GD+AVGKS+ L R  ++EFR +   T+GV+F  + + V  +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR+I  SY+R A G LL+YD+T   +F N ++W+  + +     + I+LVGNK+D+  +
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 133 REVNEEE------GKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177
                ++      G+ LA T G  F ETSA    N+ +A L +  ++ + T
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 16/195 (8%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
           G   D + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    +  
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60  --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
                    +  Q+WDTAG ERFR++T++++R A G LL +D+T + +F N + W  +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE---DAF 166
              +C +   IVL+GNK+DL   REVNE + + LAE  G+ + ETSA    NVE   +  
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 167 LQMINQIHQTTIQKS 181
           L +I +  +  ++K+
Sbjct: 180 LDLIXKRXEKCVEKT 194

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 16/195 (8%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
           G   D + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    +  
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60  --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
                    +  Q+WDTAG ERFR++T++++R A G LL +D+T + +F N + W  +L+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE---DAF 166
              +C +   IVL+GNK+DL   REVNE + + LAE  G+ + ETSA    NVE   +  
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 167 LQMINQIHQTTIQKS 181
           L +I +  +  ++K+
Sbjct: 180 LDLIXKRXEKCVEKT 194

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 14/194 (7%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI------- 54
           G   D + DYL K + +GDS VGK+++L ++   +F      T+G++F  + +       
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60
Query: 55  --RVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
              VG  + I  Q+WDTAG ERFR++T++++R A+G LL++D+T   +F N + W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
Query: 112 EFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA---FL 167
               S    IVL GNKSDL   R V EEE + LAE  G+ + ETSA    N+  A    L
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 168 QMINQIHQTTIQKS 181
            +I +  + ++ KS
Sbjct: 181 DLIMKRMERSVDKS 194

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GD  VGKS+L++R+  ++F   +  TIGVEF  R++ V  + +  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
           ERF+++ + +YRGA   LL + +  R +FEN   W +E   +           V++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
           D    R+V  EE +      G Y ++ETSA  + NV  AF + + Q+
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           LFK +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
           ERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GNK+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
           D+   R+V+ EE +   +  G Y + ETSA  + NV  AF + + +I  T
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAG 70
           + K +++GDS VGK++L+ R+  D++    K TIG +F  + + V GDK+   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNK 126
           QERF+++  ++YRGA   +LVYD+T  ++FEN K W  E               V++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 127 SDLTHSRE-VNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
            D   S++ V+E+  + LA++ G +    TSA   +NV+ AF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++G+ AVGKS+++ R+ +  F  D K TIGV+F  R I+V D+ ++  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
            F AIT +YYRGA   +LV+  T R +FE    W RE        +   LV NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDD 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
             +  EE + LA+   L F  TS  ++LNV + F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           LFK +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
           ERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
           D++  R+V+ EE +      G Y + ETSA    NV  AF + + ++  T
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           LFK +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
           ERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
           D++  R+V+ EE +      G Y + ETSA    NV  AF + + ++  T
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 5/167 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +FK ++IGDS VGK+ L  RF    F   ++ TIGV+F  R + +  + IK Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72  ERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDL 129
           ERFR ++   YYR     + VYD+T  A+F +   W+ E ++   ++ +  +LVGNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAFLQMINQI 173
             + +V  +  +  A+T  +   ETSA     N +VE  F+ + +++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
           ERF+++  ++YRGA   +LV+D+T   TF+    W  E     S         V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           DL + +   +           + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
           ERF+++  ++YRGA   +LV+D+T   TF+    W  E     S         V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           DL + +   +           + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +FK ++IGDS VGK+ L  RF    F   ++ TIGV+F  R + +  + IK Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72  ERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDL 129
           ERFR ++   YYR     + VYD T  A+F +   W+ E ++   ++ +  +LVGNK DL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAFLQMINQI 173
             + +V  +  +  A+T      ETSA     N +VE  F  + +++
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
           ERF+++  ++YRGA   +LV+D+T   TF+    W  E     S         V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           D  + +   +           + + ETSA + +NVE AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
           ERF+++  ++YRGA   +LV+D+T   TF+    W  E     S         V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           DL + +   +           + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF     PT+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF     PT+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M  +   E    FK V++GD   GK+  + R    EF      T+GVE            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IK  +WDTAGQE+F  +   YY  A  A++++D+T R T++N   W R+L   C + + I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 122
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           VL GNK D+   R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 123 VLCGNKVDIK-DRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 122 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 72
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ S
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 76
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ S
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 64
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ S
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++ +D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 40/203 (19%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL------------ 60
           +K V++G+S+VGKS+++ R  +D F  ++  TIG  F    + + D              
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 61  -------------------------IKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT 95
                                    IK  IWDTAGQER+ +I   YYRGA  A++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96  RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETS 155
              T +  K W+ +L+   SS   I+LV NK D  +  +V+  E +  A+   L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 156 AMQNLNVEDAFLQMINQIHQTTI 178
           A    N+++ F  +  +I++  I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNII 207

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           ++  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 65
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS--CMAIVLVGNKSDL 129
           E + AI  +Y+R   G LLV+ IT   +F  T ++  ++    +    + +++VGNKSDL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
              R+V  EE +  AE  G+ ++ETSA    NV+  F  ++ +I 
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 170

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS--CMAIVLVGNKSDL 129
           E + AI  +Y+R   G LLV+ IT   +F  T ++  ++    +    + +++VGNKSDL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
              R+V  EE +  AE  G+ ++ETSA    NV+  F  ++ +I 
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84
           KS L  +F +  F  D  PTI   +  + + + D+  +  I DTAGQE F A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85  ALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL 143
             G LLV+ +T R +FE   K+ R+ LR        ++L+GNK+DL H R+V +EEG+ L
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 144 AETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           A    + +ME SA   +NV+ AF +++  I +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 130
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 131 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 125 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M  +   E    FK V++GD   GK+  + R    E       T+GVE            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IK  +WDTAGQE+F  +   YY  A  A++++D+T R T++N   W R+L   C + + I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 122
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           VL GNK D+   R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 123 VLCGNKVDIK-DRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V + +  +    + L + + SA  N N E  FL +  ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 62
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
             R+V+ EE K  A+   + ++ETSA    NV+  F  ++ +I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI-RVGDKLIKAQIWDTAGQE 72
           K V++G   VGK++L  +F   EF     PT  VE  Y  I  +G       + DTAGQ+
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT--VENTYSKIVTLGKDEFHLHLVDTAGQD 83
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTH 131
            +  +  S+  G  G +LVY +T   +F+  +   ++L E    + + +VLVGNK+DL+ 
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            REV   EGK LAE+ G  FME+SA +N   +  F ++I +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + +  G++ ++  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 64
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ S
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      TIGVE    +       IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 120
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
                +E K+ A+T      + L + + SA  N N E  FL +  ++
Sbjct: 121 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      TIGVE    +       IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 121
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
                +E K+ A+T      + L + + SA  N N E  FL +  ++
Sbjct: 122 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      TIGVE    +       IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C + + IVL GNK D+   
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 128
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
                +E K+ A+T      + L + + SA  N N E  FL +  ++
Sbjct: 129 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQ 71
           ++  + G   VGKS+L+ RF +  FR    PT  VE  YR +   DK I   QI DT G 
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDL 129
            +F A+           +LVY IT R + E  K    ++ E       + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
           + SREV   E + LA T    FMETSA  N NV++ F +++N
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL-IKAQIWDTAGQ 71
            K V++GD A GK++L + FA++ F    K TIG++F  R I +   L +  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSD 128
                +   Y  GA G LLVYDIT   +FEN + W   ++++ E   +   + LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 129 LTHSREVNEEE 139
           L H R +  E+
Sbjct: 127 LEHMRTIKPEK 137

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
             K V +GD AVGK+ +L  +  ++F  D  PT+   F+  N+ V  +++   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQ 67
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
           E +  +    YRGA   +L + +  +A++EN  KKW+ ELR F  + + IVLVG K DL 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 126
Query: 131 HSREVNEEEGKILAETEG---------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             +    +   ++  T+G           ++E S+    NV+  F   I  + Q   +K 
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 182 L 182
           +
Sbjct: 187 V 187

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+   +  +++    S  + +VLVGNKSDL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            SR V+ ++ + LA + G+ F+ETSA     V+DAF  ++ +I +
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+   +  +++    S  + +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            SR V+ ++ + LA + G+ F+ETSA     V+DAF  ++ +I +
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            +R V   + + LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            +R V   + + LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F     PTI  E +YR  + V  +    +I DTAG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G  LVY IT ++TF + +  LRE  LR   +  + ++LVGNK DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              R V +E+G+ LA +     F+E+SA   +NV + F  ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             R V   + + LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 122 -GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F     PTI  E +YR  + V  +    +I DTAG 
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G  LVY IT ++TF + +  LRE  LR   +  + ++LVGNK DL
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDL 122
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              R V +E+G+ LA +     F+E+SA   +NV + F  ++ QI++
Sbjct: 123 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQ
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
           E + A+   Y R   G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            +R V   + + LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F  +  PTI  E +YR  + V  +    +I DTAG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI--EDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G  LVY IT ++TF + +  LRE  LR   +  + ++LVGNK DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              R V +E+G+ LA       F+E+SA   +NV + F  ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
           +K V++G   VGKS L  +F +  F     PTI  E +YR  + V  +    +I DTAG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
           E+F A+   Y +   G  LVY IT ++TF + +  LRE  LR   +  + ++LVGNK DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              R V +E+G+ LA       F+E+SA   +NV + F  ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 128
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
             K V +GD AVGK+ LL  +  + F  D  PT+   F+  N+ V    +   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQ 66
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLT 130
           E +  +    YRGA   +L + +  +A++EN +KKW+ EL+ +    + IVLVG K DL 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVGTKLDLR 125
Query: 131 HSRE-------------VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
             ++             V  EE K L       ++E S+    NV+  F   I  + Q 
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPA--YIECSSKSQENVKGVFDAAIRVVLQP 182

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
             K V +GD AVGK+ +L  +  + F  D  PT+   F+  N+ V    +   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQ 64
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
           E +  +    YRGA   +L + +  +A++EN  KKW+ ELR +    + I+LVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
Query: 131 HSRE----------VNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQT 176
             ++          +   +G+ L +  G   ++E S+    NV+  F   I  + Q 
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G  +VGKS+L  +F   +F   + PTI   F  + I V  +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
           +     +Y     G +LVY +T   +FE  K    +L +      + I+LVGNK DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
           R ++ EEGK LAE+    F+E+SA +N    D F ++I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQE 72
           K  + G + VGKS L+ RF    F  +  PT+  E  YR+   + D+++  +I DTAGQE
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENT---KKWLRELREFCSSCMAIVLVGNKSDL 129
                   + R   G +LVYDIT R +FE     K  L E+++     + ++LVGNK+DL
Sbjct: 88  D-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFLQMINQIHQ 175
            HSR+V+ EEG+ LA      F E SA     N+ + F ++  ++ +
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
             K V +GD AVGK+ +L  +  + F  D  PT+   F+  N+ V    +   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ 64
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
           E +  +    YRGA   LL + +  +A++EN  KKWL EL+ +    + IVLVG K DL 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG-IPIVLVGTKLDLR 123
Query: 131 HSRE----------VNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
             ++          +   +G+ L +  G + ++E S+    NV+  F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G  +VGKS+L  +F   +F     PTI   F  + I V  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
           +     +Y     G +LVY +T   +FE  K    +L +      + I+LVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
           R ++ EEGK LAE+    F+E+SA +N    D F ++I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-VEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +K  +IGD  VGK+  ++R     F  +   T+G V      +     +IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           E+   +   YY GA GA+L +D+T R T +N  +W++E +    +   IV+  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
            ++++++    + + +   + E SA    N    FL +
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G  +VGKS+L  +F   +F     PTI   F  + I V  +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
           +     +Y     G +LVY +T   +FE  K    +L +      + I+LVGNK DL   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
           R ++ EEGK LAE+    F+E+SA +N    D F ++I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K  ++G  +VGKS+L  +F   +F     PTI   F  + I V  +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
           +     +Y     G +LVY +T   +FE  K    +L +      + I+LVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
           R ++ EEGK LAE+    F+E+SA +N    D F ++I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +F +  F  D  PTI  E +Y ++  + ++     + DTAGQE F A+   Y R
Sbjct: 26  KSALTIQFFQKIFVPDYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 83
Query: 84  GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L+VY +T +A+FE+  ++ +  LR        ++LV NK DL H R+V  ++GK 
Sbjct: 84  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 143
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
           +A    + ++ETSA    LNV+  F  ++  I Q
Sbjct: 144 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GK++LL  FA   F     PT+  E    N++V  K +   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  +   +Y  A   LL +D+T   +F+N   +W  E+  FC   + I++VG K+DL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-VPIIVVGCKTDLRKD 153
Query: 133 R------------EVNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
           +             V    G+ +A + G + ++E SA  + NV   F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A++EN + KW  E+R  C S   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI---HQ 175
            ++  E+            +G  LA E + + ++E SA+    ++  F + I  +     
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 176 TTIQKSLCAKM 186
           T  QK  C+ +
Sbjct: 182 TRQQKRACSLL 192

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +F +  F  D  PTI  E +Y ++  + ++     + DTAGQE F A+   Y R
Sbjct: 31  KSALTIQFFQKIFVDDYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84  GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L+VY +T +A+FE+  ++ +  LR        ++LV NK DL H R+V  ++GK 
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
           +A    + ++ETSA    LNV+  F  ++  I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 144
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A       ++E SA     V + F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH- 131
           +       Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL + 
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 132 ---SRE--------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
              +RE        V   EG+ +A   G + +ME SA     V + F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +F +  F  +  PTI  E +YR +  + ++     + DTAGQE F A+   Y R
Sbjct: 31  KSALTIQFFQKIFVDEYDPTI--EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84  GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L+VY +T +A+FE+  ++ +  LR        ++LV NK DL H R+V  ++GK 
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
           +A    + ++ETSA    LNV+  F  ++  I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQERFRAITSSYYR 83
           KS L  +F +  F  D  PTI  E +Y  I   D +  +  I DTAGQE F A+   Y R
Sbjct: 22  KSALTIQFIQSYFVSDYDPTI--EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 84  GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G LLV+ I  R +F    K   + LR        +VLVGNK+DL   R+V   E   
Sbjct: 80  AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              +  + + E SA   LNV++AF Q++  + +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +F +  F  +  PTI  E +Y ++  + ++     + DTAGQE F A+   Y R
Sbjct: 31  KSALTIQFFQKIFVPEYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84  GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L+VY +T +A+FE+  ++ +  LR        ++LV NK DL H R+V  ++GK 
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
           +A    + ++ETSA    LNV+  F  ++  I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK++L+  +  + +  +  PT    F+   + V  + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           F  +    Y      LL + +   ++F+N ++KW+ E+R  C     I+LVG +SDL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-APIILVGTQSDLRED 139
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
                       + V EE  K+LA E +   ++E SA+   N+++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           LA + G+ ++ETSA     VEDAF  ++ +I Q  ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A++EN + KW  E+R  C S   I+LVG K DL  
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 127
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  LA E + + ++E SA+    ++  F + I  +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDECDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNKSDL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+   +  +++    S  + +VLVGNKSDL  SR V+ ++ + 
Sbjct: 75  TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ F+ETSA     V+DAF  ++ +I +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+   +  +++    S  + +VLVGNKSDL  SR V+ ++ + 
Sbjct: 75  TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ F+ETSA     V+DAF  ++ +I +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A++EN + KW  E+R  C S   I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 128
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  LA E + + ++E SA+    ++  F + I  +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           LA + G+ ++ETSA     VEDAF  ++ +I Q  ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           LA + G+ ++ETSA     VEDAF  ++ +I Q  ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A   G + +ME SA     V + F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D ++    I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+  E    +  +  + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E++EFC +   ++LVG KSD    
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 126
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
                 L++ R+  V+ ++G  +A+  G   ++E SA+Q+ N V D F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++DEF     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  +    Y      L+ + +    + EN  +KW+ E++ FC + + I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLRSD 144
Query: 133 REVNEEEGKILAET 146
             V  E  ++  E 
Sbjct: 145 EHVRTELARMKQEP 158

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y     +L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 123
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+  E    +  +  + I+  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E++EFC +   ++LVG KSD    
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 147
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
                 L++ R+  V+ ++G  +A+  G   ++E SA+Q+ N V D F
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y     +L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 125
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y     +L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y     +L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+   +   +  +  + I+  +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 83
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   L+ +DI+R  T ++  KKW  E++EFC +   ++LVG KSD    
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 142
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
                 L++ R+  V+ ++G  +A+  G   ++E SA+Q+ N V D F
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 23  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 80
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 81  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 139
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 140 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ FC + + I+LVGNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 124
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A       ++E SA     V + F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEFDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 91
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +F +   +  +++    S  + +VLVGNK DL  +R V+ ++   
Sbjct: 92  TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHE 150
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           LA++ G+ F+ETSA     VEDAF  ++ +I Q  ++K
Sbjct: 151 LAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F     PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVEKYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F     PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDKYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + I    + EN  +KW  E++ F  + + I+LVGNK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPN-VPIILVGNKKDLRQD 144
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
            H+R          V  EEG+ +A       ++E SA     V + F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  P+I  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 22  KSALTIQLIQNHFVDEYDPSI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 79
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 80  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 138
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 139 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 131
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 69
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 128
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 140
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGN+ DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  P+I  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPSI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DT GQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           K+ L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KNALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DT GQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG+E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMR 91
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+   +  +++    S  + +VLVGNK DL  SR V+ ++ + 
Sbjct: 92  TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQD 150
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ F+ETSA     V+DAF  ++ +I +
Sbjct: 151 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +  Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTA QE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 14  KAVMIGDSAVGKSNLLSRFAR--DEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW--DTA 69
           K  ++G++ VGKS L+S F     +F  D   T GVE     + + D  +  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNK 126
           G + ++   S Y+ G   A+LV+D++   +FE+ K W   L+  R      +  VLV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 SDLTHSR-EVNEEEGKILAETEGLYFMETSAMQNLNVEDA-FLQMINQIHQ 175
           +DL   R +V  +  +  A T  L F + SA       DA FL +    ++
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C     I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 121
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E             +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTA QE + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAGQE   A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  F++ E      PT+   F++      ++ I   +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y  +   LL + +  R +F+N + KW  E++ +  +    VLVG K DL  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLRK 140
Query: 132 --SREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
             S +V ++EG  L +  G + ++E S++  + + + F + ++ I
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 185

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  F++ E      PT+   F++      ++ I   +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y  +   LL + +  R +F+N + KW  E++ +  +    VLVG K DL  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLRK 141
Query: 132 --SREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
             S +V ++EG  L +  G + ++E S++  + + + F + ++ I
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C     I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 122
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E             +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C     I+LVG K DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 122
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E             +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMR 78
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 79  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
           ++ V+IG+  VGKS L + FA     +DS   +  E  Y    + D     +I   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
            G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I+LVGNKS
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           DL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           + K V++GD AVGK+ LL  +A D F  +  PT+   +A  ++ VG K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL- 129
           E +  +    Y      L+ + +   A+F+N K +W+ EL+E+  + +  +L+G + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLR 135
Query: 130 -----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
                         + +  E+G+ LA E     ++E SA+    ++  F + I  I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
           ++ V+IG+  VGKS L + FA     +DS   +  E  Y    + D     +I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
            G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I+LVGNKS
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           DL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+
Sbjct: 125 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
           ++ V+IG+  VGKS L + FA     +DS   +  E  Y    + D     +I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
            G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I+LVGNKS
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           DL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L++ V++GD  VGK++L S FA  + R D    +G +   R + V  +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQER-DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 72  ERFRAITS--SYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSD 128
           E+     S  S  +G    ++VY I  R +FE+  +   +LR    +  + I+LVGNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
           L   REV+ EEG+  A      F+ETSA    NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
           KS L  +  ++ F  +  PTI  E +YR   V D +     I DTAG E + A+   Y R
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMR 73
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
              G L V+ I    +FE+  ++  +++    S  + +VLVGNK DL  +R V   + + 
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  +    +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
           ++ V+IG+  VGKS L + FA     +DS   +  E  Y    + D     +I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
            G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I+LVGNKS
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           DL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 124
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    Y      L+ + +   A+FEN + KW  E+R  C +   I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++  E+            +G  +A E   + ++E SA+    ++  F + I  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 35/194 (18%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRAITSSYYRGALGALLVYDITRR-------------------ATFENTK-KWLRELRE 112
            +  +    Y   +G     DIT R                   A+FEN + KW  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 113 FCSSCMAIVLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQN 159
            C +   I+LVG K DL   ++  E+            +G  +A E   + ++E SA+  
Sbjct: 125 HCPN-TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 160 LNVEDAFLQMINQI 173
             ++  F + I  +
Sbjct: 184 RGLKTVFDEAIRAV 197

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
            ++ DE    L K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
              +WDTAG E +  +    Y      L+ + +   A+F + + KW  E+R  C +   I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
           +LVG K DL   ++  E+            +G  +A E   + ++E SA+    ++  F 
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
           + I  +
Sbjct: 323 EAIRAV 328

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
            ++ DE    L K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
              +WDTAG E +  +    Y      L+ + +   A+F + + KW  E+R  C +   I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
           +LVG K DL   ++  E+            +G  +A E   + ++E SA+    ++  F 
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
           + I  +
Sbjct: 323 EAIRAV 328

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
            ++ DE    L K V++GD AVGK+ LL  +  + F  +  PT+   ++  N+ V  K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
              +WDTAG E +  +    Y      L+ + +   A+F + + KW  E+R  C +   I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
           +LVG K DL   ++  E+            +G  +A E   + ++E SA+    ++  F 
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
           + I  +
Sbjct: 323 EAIRAV 328

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84
           KS L  +F    F     PTI  +F  + I V       +I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 85  ALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
             G +LVY +  + +F++ K  +R+  +R      + ++LVGNK DL   REV+  EG+ 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           LAE  G  FMETSA     V++ F +++ Q++
Sbjct: 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 5   YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----L 60
           +  + D +FK +++G+S VGKS L   F   +     +P    +   R I V DK    L
Sbjct: 16  FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTL 74
Query: 61  IKAQIW---DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC 117
           +   IW   D  G  R   + +         L+V+ +T R +F    + L  LR      
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 118 -MAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            + ++LVGNKSDL  SREV+ EEG+ LA T     +ETSA  + N  + F   + QI
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 25  KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQERFRAITSSYYR 83
           KS+L+ RF +  FR    PTI  E  YR +   DK +   QI DT G  +F A+      
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTI--EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 84  GALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLTHSREVNEEEGK 141
                +LV+ +T + + E      + + +   S   + ++LVGNK D T  REV+  E +
Sbjct: 79  KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 142 ILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
            +A+     FMETSA  N NV++ F +++ 
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL   ++ +F     PT+  E    ++ V  + ++  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH- 131
           +  +    Y  +   L+ + I    + EN + KW+ E+  FC   + I+LVG K DL + 
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-VPIILVGCKVDLRND 129
Query: 132 -----------SREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
                       + V  +EG+ +A+  G   + E SA     V + F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
           ++K +++G   VGKS L   F   E   D          Y R+I V  +     ++D   
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
           Q+  R +           ++VY +T + +FE   +   +LR    +  + I+LVGNKSDL
Sbjct: 64  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             SREV+ +EG+  A      F+ETSA  + NV+  F  ++ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
           ++K +++G   VGKS L   F   E   D          Y R+I V  +     ++D   
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
           Q+  R +           ++VY +T + +FE   +   +LR    +  + I+LVGNKSDL
Sbjct: 64  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             SREV+ +EG+  A      F+ETSA  + NV+  F  ++ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
           ++K +++G   VGKS L   F   E   D          Y R+I V  +     ++D   
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 58
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
           Q+  R +           ++VY +T + +FE   +   +LR    +  + I+LVGNKSDL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             SREV+ +EG+  A      F+ETSA  + NV+  F  ++ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 123
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 124
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 131
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 125
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 122
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 124
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 124
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 128
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 128
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-GVEFAYRNIRVGDK----LIKAQ 64
           D +FK +++G+S VGKS L   F     + D+   +   E  Y    + DK    LI   
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFG--GLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD 67
Query: 65  IW---DTAG--QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-M 118
           IW   D  G  Q+       ++       L+V+ +T R +F    + L  LR       +
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 120
Query: 119 AIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++LVGNKSDL  SREV+ EEG+ LA T     +ETSA  + N  + F   + QI
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GK+ +L   A+D +     PT+   +    +   ++ ++  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   LL +DI+R  T ++  KKW  E+ ++C S   ++L+G K+D    
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 130
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAMQN 159
                 L+H ++  ++ E+G  +A+  G   ++E SA  +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 170

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  ++F  +  P +   +A   + +G +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                       + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GK+ +L   A+D +     PT+   +    +   ++ ++  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   LL +DI+R  T ++  KKW  E+ ++C S   ++L+G K+D    
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 129
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAMQN 159
                 L+H ++  ++ E+G  +A+  G   ++E SA  +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 169

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----LIKAQIWD 67
           +FK +++G+S VGKS L   F   +     +     +   R I V DK    LI   IW+
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWE 60
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNK 126
                 +  +     +     L+V+ +T R +F    + L  LR       + ++LVGNK
Sbjct: 61  QGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           SDL  SREV+ EEG+ LA T     +ETSA  + N  + F   + QI
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++   +  PT+   +A   + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD   GK+ +L   A+D +     PT+   +    +   ++ ++  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
           +  +    Y  +   LL +DI+R  T ++  KKW  E+ ++C S   ++L+G K+D    
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 146
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAM 157
                 L+H ++  ++ E+G  +A+  G   ++E SA 
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 125
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+   +A   + +G +     ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   ++FEN K KW+ E+   C      +LVG + DL  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
                        + +  E  + LA + + + ++E SA+    +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
           ++G    GK+  ++  A  +F  D  PT+G  F  R +  G+  IK  IWD  GQ RFR+
Sbjct: 27  LVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPRFRS 82
Query: 77  ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
           +   Y RG    + + D   R   E ++  L  L +      + ++++GNK DL ++   
Sbjct: 83  MWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA--- 139
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
                  L E + +  M  SA+Q+
Sbjct: 140 -------LDEKQLIEKMNLSAIQD 156

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
           ++G    GK+  ++  A  +F  D  PT+G  F  R I  G+  IK  +WD  GQ RFR+
Sbjct: 27  LVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRS 82
Query: 77  ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
           +   Y RG    + + D   +   E +K  L  L +      + ++++GNK DL  +   
Sbjct: 83  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--- 139
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
                  L E E +  M  SA+Q+
Sbjct: 140 -------LDEKELIEKMNLSAIQD 156

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
           ++G    GK+  ++  A  +F  D  PT+G  F  R I  G+  IK  +WD  GQ RFR+
Sbjct: 36  LVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRS 91
Query: 77  ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
           +   Y RG    + + D   +   E +K  L  L +      + ++++GNK DL  +   
Sbjct: 92  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--- 148
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
                  L E E +  M  SA+Q+
Sbjct: 149 -------LDEKELIEKMNLSAIQD 165

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 374
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           GQ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 428
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 429 FANKQDLPDAMKPHEIQEKL 448

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 65
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           GQ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 66  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 119
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 120 FANKQDLPDAMKPHEIQEKL 139

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 52
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           GQ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 53  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 106
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 107 FANKQDLPDAMKPHEIQEKL 126

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 52
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           GQ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 53  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 106
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 107 FANKQDLPDAMKPHEIQEKL 126

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 64
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           GQ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 118
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 119 FANKQDLPDAMKPHEIQEKL 138

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 54
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           G ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 55  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 108
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 109 FANKQDLPDAMKPHEIQEKL 128

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 55
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           G ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 56  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 109
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 110 FANKQDLPDAMKPHEIQEKL 129

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 65
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
           G ++ R +   YY G  G + V D   R   +  ++ L      RE+R+      AI+L+
Sbjct: 66  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 119
Query: 124 -GNKSDLTHSREVNEEEGKI 142
             NK DL  + + +E + K+
Sbjct: 120 FANKQDLPDAMKPHEIQEKL 139

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTAG 70
           + + +G  A GK+ +L +    +  + + PT+G       Y+N+       K  +WD  G
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVGG 53
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSDL 129
           Q++ R +   YY G  G + V D   R   +  ++ L  +        AI+L+  NK DL
Sbjct: 54  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
Query: 130 THSREVNEEEGKI 142
             + + +E + K+
Sbjct: 114 PDAXKPHEIQEKL 126

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNICF-------TVWDVG 69
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLR------ELREFCSSCMAIVLV 123
           GQ+R R +   Y++   G + V D   R   +     L+      ELR+       ++L 
Sbjct: 70  GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRD-----AVLLLF 124
Query: 124 GNKSDLTHSREVNEEEGKI 142
            NK DL ++  ++E   K+
Sbjct: 125 ANKQDLPNAMAISEMTDKL 143

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G    GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVG 52
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSD 128
           GQ+R R++   YYR   G + V D   R+     ++ + R L E      A ++  NK D
Sbjct: 53  GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 LTHSREVNE 137
           L  +    E
Sbjct: 113 LPEAMSAAE 121

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+++L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 69
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQ++ R +   YY+     + V D   R      ++ L ++        AI+LV  NK D
Sbjct: 70  GQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 LTHSREVNEEEGKILAET 146
           L  +  ++E   K+  +T
Sbjct: 130 LPQAMSISEVTEKLGLQT 147

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTAG 70
           + +M+G    GK+ +L +    E  + + PTIG       Y+NI          +WD  G
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVGG 70
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDL 129
           Q+R R++   YYR   G + V D   R+     ++ + R L E      A ++  NK DL
Sbjct: 71  QDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130
Query: 130 THSREVNE 137
             +    E
Sbjct: 131 PEAMSAAE 138

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNICF-------TVWDVG 81
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQ++ R +   Y++   G + V D   R   + +   L+++ +      A++LV  NK D
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 129 LTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAF 166
           + ++  V+E   K+  +   +   Y   T A Q   + D  
Sbjct: 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-----VEFAYRNIRVGDKLIKAQIWDT 68
           + +M+G  A GK+ +L +    E  + + PTIG     VEF  RNI          +WD 
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVETVEF--RNISF-------TVWDV 68
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKS 127
            GQ++ R +   YY    G + V D   R   ++ ++ L  +        AI+LV  NK 
Sbjct: 69  GGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQ 128
Query: 128 DLTHSREVNEEEGKILAET--EGLYFMETS 155
           DL ++    E   K+   T  E  +F++++
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQST 158

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
            + +M+G    GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVG 69
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQ+R R++   YYR   G + V D   R+     ++ ++ +        A+ LV  NK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 LTHSREVNE 137
           L  +    E
Sbjct: 130 LPEAMSAAE 138

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 52
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
           GQ++ R +   Y++   G + V D   R    E  ++ +R L E       +++  NK D
Sbjct: 53  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 LTHSREVNEEEGKI 142
           L ++    E   K+
Sbjct: 113 LPNAMNAAEITDKL 126

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTAG 70
           + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  G
Sbjct: 18  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVGG 69
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           Q++ R +   Y++   G + V D   R    E  ++ +R L E       +++  NK DL
Sbjct: 70  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
Query: 130 THSREVNEEEGKI 142
            ++    E   K+
Sbjct: 130 PNAMNAAEITDKL 142

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTAG 70
           + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  G
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVGG 70
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           Q++ R +   Y++   G + V D   R    E  ++ +R L E       +++  NK DL
Sbjct: 71  QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 130 THSREVNEEEGKI 142
            ++    E   K+
Sbjct: 131 PNAMNAAEITDKL 143

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKL---IKAQIWD 67
           K  ++G++  GK+ LL +  + + + D      T+G++     I++ DK    +   +WD
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTK-KSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITR-RATFENTKKWLRELREFCSSCMAIVLVGNK 126
            AG+E F +    +       L VYD+++ +A  +  K WL  ++   SS   ++LVG  
Sbjct: 63  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTH 121
Query: 127 SDLTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC 183
            D++  ++      KI  E     G   +      N   E   L    ++ +T I +SL 
Sbjct: 122 LDVSDEKQRKACXSKITKELLNKRGFPAIRDYHFVNATEESDALA---KLRKTIINESLN 178
Query: 184 AKMNDK 189
            K+ D+
Sbjct: 179 FKIRDQ 184

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           + +M+G    GK+ +L +    E  + + PTIG  F    ++  +  I   +WD  GQ+R
Sbjct: 19  RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQDR 73
Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR---EFCSSCMAIVLVGNKSDLT 130
            R++   YY    G + V D   R+     ++ ++ +    E C++  A ++  NK DL 
Sbjct: 74  IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNA--AWLVFANKQDLP 131
Query: 131 HSREVNE 137
            +    E
Sbjct: 132 EAMSAAE 138

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKL---IKAQIWD 67
           K  ++G++  GK+ LL +  + + + D      T+G++     I++ DK    +   +WD
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTK-KSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 68  TAGQERFRAITSSYYRGALGALLVYDITR-RATFENTKKWLRELREFCSSCMAIVLVGNK 126
            AG+E F +    +       L VYD+++ +A  +  K WL  ++   SS   ++LVG  
Sbjct: 61  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTH 119
Query: 127 SDLTHSREVNEEEGKILAE 145
            D++  ++      KI  E
Sbjct: 120 LDVSDEKQRKACXSKITKE 138

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 1   MGDSYDEECDYLF-----KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YR 52
           MG S+ +    LF     + +M+G  A GK+ +L +    E  + + PTIG       Y+
Sbjct: 4   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYK 62
Query: 53  NIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT-RRATFENTKKWLRELR 111
           NI          +WD  GQ++ R +   Y++   G + V D   R    E   +  R L 
Sbjct: 63  NISF-------TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 115
Query: 112 EFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
           E       +++  NK DL ++    E   K+
Sbjct: 116 EDELRDAVLLVFANKQDLPNAMNAAEITDKL 146

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 217
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
           GQ++ R +   Y++   G + V D   R    E  ++ +R L E       +++  NK D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 LTHS 132
           L ++
Sbjct: 278 LPNA 281

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 9   CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQI 65
           C+   K +++G    GK+ +L +F  +E  + + PTIG    E   +N           +
Sbjct: 13  CNQEHKVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEEIVVKNTHF-------LM 64
Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVG 124
           WD  GQE  R+  ++YY      +LV D   R     TK+ L R L        A+++  
Sbjct: 65  WDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFA 124
Query: 125 NKSDL 129
           NK D+
Sbjct: 125 NKQDM 129

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDT 68
           D   + +++G    GK+ LL + A ++      PT G      NI+ V  +  K  +WD 
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDI 68
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKS 127
            GQ + R    SY+      + V D   R  FE T ++    L E   SC+ +++  NK 
Sbjct: 69  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 128
Query: 128 DLTHSREVNE 137
           DL  +   +E
Sbjct: 129 DLLTAAPASE 138

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDT 68
           D   + +++G    GK+ LL + A ++      PT G      NI+ V  +  K  +WD 
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDI 67
Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKS 127
            GQ + R    SY+      + V D   R  FE T ++    L E   SC+ +++  NK 
Sbjct: 68  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 128 DLTHSREVNE 137
           DL  +   +E
Sbjct: 128 DLLTAAPASE 137

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
           K +++G    GK+ +L +F+ +E  + + PTIG    E    N R         +WD  G
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 75
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL 110
           QE  R+  ++YY      ++V D T R     T++ L ++
Sbjct: 76  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 115

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
           K +++G    GK+ +L +F+ +E  + + PTIG    E    N R         +WD  G
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 74
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
           QE  R+  ++YY      ++V D T R     T++
Sbjct: 75  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
           K +++G    GK+ +L +F+ +E  + + PTIG    E    N R         +WD  G
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 69
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
           QE  R+  ++YY      ++V D T R     T++
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQE 72
           + +++G    GK+ LL + A ++      PT G      NI+ V  +  K  +WD  GQ 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDIGGQR 59
Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH 131
           + R    SY+      + V D   R  FE T ++    L E   SC+ +++  NK DL  
Sbjct: 60  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 132 SREVNE 137
           +   +E
Sbjct: 120 AAPASE 125

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
           K +++G    GK+ +L +F+ +E  + + PTIG    E    N R         +WD  G
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 69
Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
           QE  R+  ++YY      ++V D T R     T++
Sbjct: 70  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 21/188 (11%)
Query: 1   MGDSYDEECDYLF------KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAY 51
           MG+ +    D L+      + +++G    GK+ +L R    E  + +KPTIG  VE  +Y
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY 59
Query: 52  RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLR-EL 110
           +N+++        +WD  GQ   R     YY      + V D T +       K L   L
Sbjct: 60  KNLKL-------NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 112
Query: 111 REFCSSCMAIVLVGNKSDLT---HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167
           +E      A+++  NK D      + EV++E   +  +      + +SA++   + +   
Sbjct: 113 QEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD 172
Query: 168 QMINQIHQ 175
            +I+ I +
Sbjct: 173 WLIDVIKE 180

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG       Y+NI          +WD  
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 54
Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
           G ++ R +   Y++   G + V D   R    E  ++ +R L E       +++  NK D
Sbjct: 55  GLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 114
Query: 129 LTHSREVNEEEGKI 142
           L ++    E   K+
Sbjct: 115 LPNAMNAAEITDKL 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-108
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-106
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-105
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-105
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-105
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-104
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-104
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-104
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-103
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-103
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-102
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-102
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-102
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-102
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-101
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-101
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-101
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-101
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-101
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-101
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-101
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-101
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-101
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-100
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-100
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-100
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-99
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-99
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-98
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-98
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-97
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-94
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-84
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-79
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-78
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-76
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-74
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-73
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-71
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-71
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-67
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-67
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-64
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-64
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-56
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-45
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-44
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-42
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-39
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	6e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-38
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-33
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-20
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-15
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	5e-15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	5e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  308 bits (792), Expect = e-108
 Identities = 107/221 (48%), Positives = 142/221 (64%), Gaps = 2/221 (0%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
            + Y  + D LFK V+IGDS VGKSNLLSRF ++EF +DSK TIGVEFA R + +  K I
Sbjct: 3   SEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI 62

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
           KAQIWDTAGQER+RAITS+YYRGA+GAL+VYDI++ +++EN   WL ELRE     +A+ 
Sbjct: 63  KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG 122

Query: 122 LVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
           L+GNKSDL H R V  EE K  A+   L F ETSA+ + NV+ AF ++IN I+Q   +  
Sbjct: 123 LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 182 LCAKMNDKTATSNCNNLGGGKEIINID--HEVTATKQSSCC 220
           +    +     +N  +   G  I      +E      ++CC
Sbjct: 183 MDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  302 bits (777), Expect = e-106
 Identities = 106/171 (61%), Positives = 133/171 (77%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           + D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKA
Sbjct: 21  TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAG ER+RAITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LV
Sbjct: 81  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140

Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
           GNKSDL H R V  +E +  AE  GL F+ETSA+ + NVE AF  ++ +I+
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  300 bits (770), Expect = e-105
 Identities = 87/179 (48%), Positives = 109/179 (60%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
              E  D+LFK ++IG++  GKS LL +F   +F+ DS  TIGVEF  + I VG K +K 
Sbjct: 2   HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 61

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR++T SYYRGA GALLVYDIT R T+     WL + R   S  + I+L 
Sbjct: 62  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 121

Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           GNK DL   REV   E    A+   L F+ETSA+   NVE+AF+Q   +I        L
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  300 bits (770), Expect = e-105
 Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 10/215 (4%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           + E DYLFK ++IG+S VGKS LL RF+ D +  D   TIGV+F  + + +  K +K QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR ITSSYYRG+ G ++VYD+T + +F   K WL+E+  + +S +  +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K DL   R V  +  K  A+   + F+ETSA+ + NVEDAFL M  QI ++  Q++L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178

Query: 186 MNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                  +        K  +N+  +        CC
Sbjct: 179 -------NETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  299 bits (768), Expect = e-105
 Identities = 89/175 (50%), Positives = 111/175 (63%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
              +      Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF  R I V  + 
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IK QIWDTAGQERFRA+T SYYRGA GAL+VYDITRR+T+ +   WL + R   +    I
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 123

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           +L+GNK+DL   R+V  EE K  AE  GL F+E SA    NVEDAFL+   +I+Q
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  298 bits (766), Expect = e-104
 Identities = 106/185 (57%), Positives = 136/185 (73%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R ITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDK 189
            H R V  +E +  AE   L F+ETSA+ + NVE+AF  ++ +I++   QK +  +    
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

Query: 190 TATSN 194
            +  N
Sbjct: 183 ESPGN 187

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  298 bits (765), Expect = e-104
 Identities = 85/182 (46%), Positives = 109/182 (59%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           +        D+LFK ++IG +  GKS LL +F  ++F+ DS  TIGVEF  R + VG K 
Sbjct: 14  LVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT 73

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +K QIWDTAGQERFR++T SYYRGA GALLVYDIT R T+ +   WL + R   S  + +
Sbjct: 74  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVV 133

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +L GNK DL   REV   E    A+   L F+ETSA+   NVE+AFL+    I       
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193

Query: 181 SL 182
            L
Sbjct: 194 EL 195

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  297 bits (763), Expect = e-104
 Identities = 90/175 (51%), Positives = 130/175 (74%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
            E+ +++FK V+IG+S VGK+NLLSRF R+EF  DS+ TIGVEF+ R + +G   +KAQI
Sbjct: 19  SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAG ER+RAITS+YYRGA+GALLV+D+T+  T+   ++WL+EL +   + + ++LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           KSDL+ +REV  EE ++ AE  GL F+ETSA+ + NVE AF  ++ +I     ++
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  295 bits (757), Expect = e-103
 Identities = 69/181 (38%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M  + ++      K V++GD   GKS+L+ RF +D+F    + TIG  F  + + V D  
Sbjct: 3   MAAAGNK--SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +K +IWDTAGQER+ ++   YYRGA  A++V+D+T +A+FE  KKW++EL+   +  M +
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
            L GNKSDL  +R+V  E+ +  A+  GL+FMETSA    NV++ F ++  ++ +    +
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

Query: 181 S 181
           +
Sbjct: 181 N 181

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  295 bits (757), Expect = e-103
 Identities = 75/177 (42%), Positives = 113/177 (63%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
            E+ D+LFK V+IG++ VGK+ L+ RF +  F      TIGV+F  + + +  + +K QI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR+IT SYYR A   +L YDIT   +F    +WLRE+ ++ S+ +  VLVGN
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           K DL   REV+++  +  +E + +Y++ETSA ++ NVE  FL +  ++     Q +L
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 196

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  294 bits (754), Expect = e-102
 Identities = 87/180 (48%), Positives = 115/180 (63%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
            S + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
            QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           VGNK DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +     + 
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGAT 186

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  292 bits (749), Expect = e-102
 Identities = 65/167 (38%), Positives = 101/167 (60%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
            Y FK V++G+  VGK++L+ R+  ++F      T+G  F  + + +G K +   IWDTA
Sbjct: 4   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERF A+   YYR + GA+LVYDIT   +F+  K W++ELR+   + + + +VGNK DL
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
              R V+ +E +  AE+ G     TSA QN  +E+ FL +  ++ +T
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  292 bits (751), Expect = e-102
 Identities = 92/180 (51%), Positives = 112/180 (62%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
                   YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R + +  K IK
Sbjct: 12  SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIK 71

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
            QIWDTAGQE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  SS M I+L
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           +GNKSDL   R+V  EEG+  A   GL FMETSA    NVE+AF+    +I++   Q   
Sbjct: 132 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  292 bits (749), Expect = e-102
 Identities = 87/172 (50%), Positives = 114/172 (66%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S + E DYLFK ++IGDS VGKS LL RFA D +      TIGV+F  R I +  K IK 
Sbjct: 25  SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+  + S  +  +LV
Sbjct: 85  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144

Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           GNK DLT  + V+    K  A++ G+ F+ETSA    NVE +F+ M  +I +
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  291 bits (748), Expect = e-101
 Identities = 74/197 (37%), Positives = 116/197 (58%), Gaps = 9/197 (4%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
               DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + I   DK IK QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAG ER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      ++LVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K D+   R V+ E G+ LA+  G  F E SA  N+NV+  F ++++ I +         K
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE---------K 172

Query: 186 MNDKTATSNCNNLGGGK 202
           M++   T++    G  +
Sbjct: 173 MSESLDTADPAVTGAKQ 189

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  291 bits (748), Expect = e-101
 Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
             DE+ D+LFK V++GD++VGK+ ++ RF    F      TIGV+F  + + +  K +K 
Sbjct: 21  DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKL 80

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR IT SYYR A GA+L YDIT+R++F +   W+ ++R++  S +  +L+
Sbjct: 81  QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140

Query: 124 GNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQ 175
           GNKSDL+  REV+  E + LAE    L  +ETSA  + NVE+AFL++  ++  
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  291 bits (746), Expect = e-101
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 1/202 (0%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
                 +  D + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K 
Sbjct: 9   ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +K Q+WDTAGQERFR IT++YYRGA+G +LVYD+T   TF N K+W + + E  +    +
Sbjct: 69  VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQL 128

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +LVGNKSD+  +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +     
Sbjct: 129 LLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 181 SLCAKMNDKTATSNCNNLGGGK 202
            L    N K    + N+  G  
Sbjct: 188 KLVGVGNGKEGNISINSGSGNS 209

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  289 bits (743), Expect = e-101
 Identities = 82/177 (46%), Positives = 115/177 (64%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
            +  DYLFK ++IGDS VGK+ +L RF+ D F      TIG++F  R I +  K IK QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR IT++YYRGA+G +LVYDIT   +F+N + W+R + E  S+ +  +++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           K D+   R+V++E G+ LA   G+ FMETSA  N+NVE+AF  +   I     +   
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  290 bits (744), Expect = e-101
 Identities = 69/176 (39%), Positives = 110/176 (62%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
               +    DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + +   +K 
Sbjct: 12  ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           +K QIWDTAGQER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      +
Sbjct: 72  VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQV 131

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           +LVGNK D+   R V  E+G++LAE  G  F E SA +N++V  AF ++++ I   
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  289 bits (742), Expect = e-101
 Identities = 76/177 (42%), Positives = 107/177 (60%), Gaps = 1/177 (0%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S   + D+LFK ++IGDS VGKS+LL RFA + F      TIGV+F  R + +  + +K 
Sbjct: 1   SMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
           QIWDTAGQERFR ITS+YYRG  G ++VYD+T   +F N K+WL E+ + C   +  +LV
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILV 119

Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           GNK+D    + V  E+    A   G+   ETSA +N+NVE+ F  +   + +     
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  289 bits (742), Expect = e-101
 Identities = 71/173 (41%), Positives = 109/173 (63%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
                  DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + +   DK IK
Sbjct: 13  GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK 72

Query: 63  AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
            QIWDTAGQER+R IT++YYRGA+G LL+YDI  + +F   + W  +++ +      ++L
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           VGNK DL   R V  E+G+ LA+  G  F E SA +N+NV+  F ++++ I +
Sbjct: 133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  289 bits (742), Expect = e-101
 Identities = 69/171 (40%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
               D+  + ++IG   VGK++L+ RF  D F    K T+GV+F  + + +  K I+ QI
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERF +ITS+YYR A G +LVYDIT++ TF++  KW++ + ++ S    ++LVGN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139

Query: 126 KSDLTHSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           K D    RE+  ++G+  A +  G+ F E SA  N NV++ FL++++ I +
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  289 bits (741), Expect = e-101
 Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQ 64
            +  D  FK +++GDS VGK+ LL RF    F   +   T+G++F  + + V    +K Q
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 65  IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVG 124
           +WDTAGQERFR++T +YYR A   LL+YD+T +A+F+N + WL E+ E+    +A++L+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

Query: 125 NKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           NK D  H R V  E+G+ LA+  GL FMETSA   LNV+ AF  +  ++ + +++ 
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  287 bits (736), Expect = e-100
 Identities = 68/164 (41%), Positives = 101/164 (61%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++GD+ VGKS+++ RF  D F  +  PTIG  F  + ++  ++L K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFRA+   YYRG+  A++VYDIT+  TF   K W+RELR+     + + + GNK DLT  
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           REV E + K  A++    F+ETSA   +N+ + F+++  +I  T
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  287 bits (738), Expect = e-100
 Identities = 67/172 (38%), Positives = 104/172 (60%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
               K  ++GD+ VGKS+++ RF +D F  +  PTIG  F  + +  G++L K  IWDTA
Sbjct: 21  IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERF ++   YYRG+  A++VYDIT++ +F   KKW++EL+E     + + + GNK DL
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
           +  REV  ++ K  AE+ G   +ETSA   +N+E+ F  +  QI      ++
Sbjct: 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  286 bits (735), Expect = e-100
 Identities = 79/177 (44%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
               DE+     K ++IG+S VGKS+LL RF  D F  +   TIGV+F  + I V     
Sbjct: 5   SSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA 64

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAI 120
           K  IWDTAGQERFR +T SYYRGA G +LVYD+TRR TF     WL EL  +C+ + +  
Sbjct: 65  KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 124

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177
           +LVGNK D   +REV+  EG   A    + F+E SA     V+ AF +++ +I QT 
Sbjct: 125 MLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  285 bits (731), Expect = 4e-99
 Identities = 67/182 (36%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
           G +        +K V+ GD+AVGKS+ L R  ++EFR +   T+GV+F  + + V  +  
Sbjct: 18  GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT 77

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
             Q+WDTAGQERFR+I  SY+R A G LL+YD+T   +F N ++W+  + +     + I+
Sbjct: 78  VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM 137

Query: 122 LVGNKSDLTHS------REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           LVGNK+D+  +      + V    G+ LA T G  F ETSA    N+ +A L +  ++ +
Sbjct: 138 LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

Query: 176 TT 177
            T
Sbjct: 198 RT 199

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  284 bits (728), Expect = 5e-99
 Identities = 67/165 (40%), Positives = 104/165 (63%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
             FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QER+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           + R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  283 bits (726), Expect = 1e-98
 Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 2/172 (1%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA+G +LVYDIT   TF N K+W + + E  +    ++LVGNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
             +R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +  I  +
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE-KIDSN 170

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  283 bits (726), Expect = 1e-98
 Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           +   K V++G+ AVGKS+++ R+ +  F  D K TIGV+F  R I+V D+ ++  +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQE F AIT +YYRGA   +LV+  T R +FE    W  ++       +   LV NK DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
                +  EE + LA+   L F  TS  ++LNV + F  +  +  Q
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  283 bits (725), Expect = 6e-98
 Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 11/199 (5%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           +      + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    + 
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 61  ----------IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL 110
                     +  Q+WDTAGQERFR++T++++R A+G LL++D+T + +F N + W+ +L
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133

Query: 111 REFCSSC-MAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
           +         IVL+GNK+DL   REVNE + + LA+  G+ + ETSA    NVE A   +
Sbjct: 134 QANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 170 INQIHQTTIQKSLCAKMND 188
           ++ I +   Q     ++ D
Sbjct: 194 LDLIMKRMEQCVEKTQIPD 212

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  281 bits (721), Expect = 7e-98
 Identities = 66/173 (38%), Positives = 106/173 (61%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ 
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           ++ Q+WDTAGQERFR++  SY R +  A++VYDIT   +F  T KW+ ++R    S + I
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII 122

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +LVGNK+DL+  R+V+ EEG+  A+   + F+ETSA    NV+  F ++   +
Sbjct: 123 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  281 bits (720), Expect = 2e-97
 Identities = 67/192 (34%), Positives = 110/192 (57%), Gaps = 12/192 (6%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV----- 56
           G   D + DYL K + +GDS VGK+++L ++   +F      T+G++F  + +       
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60

Query: 57  -----GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
                  + I  Q+WDTAG ERFR++T++++R A+G LL++D+T   +F N + W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120

Query: 112 EFCSSC-MAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
               S    IVL GNKSDL   R V EEE + LAE  G+ + ETSA    N+  A   ++
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 171 NQIHQTTIQKSL 182
           + I +  +++S+
Sbjct: 181 DLIMK-RMERSV 191

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  280 bits (719), Expect = 2e-97
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL-IKAQIWDT 68
               K V++GD A GK++L + FA++ F    K TIG++F  R I +   L +  QIWD 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGN 125
            GQ     +   Y  GA G LLVYDIT   +FEN + W   +++      +   + LVGN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           K DL H R +  E+     +  G      SA    +V   F ++  +I    + K
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  281 bits (721), Expect = 2e-97
 Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 15/211 (7%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
              FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ ++ Q+WDTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           G ERFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDK 189
              R+V+ EEG+  A+   + F+ETSA    NV+  F ++   +      +         
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ--------- 184

Query: 190 TATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
                 +        I ++           C
Sbjct: 185 ------DRSREDMIDIKLEKPQEQPVSEGGC 209

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  280 bits (718), Expect = 3e-97
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 5/175 (2%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
                 +FK ++IGDS VGK+ L  RF    F   ++ TIGV+F  R + +  + IK Q+
Sbjct: 14  RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73

Query: 66  WDTAGQERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLV 123
           WDTAGQERFR ++   YYR     + VYD+T  A+F +   W+ E ++   +  +  +LV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133

Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSA---MQNLNVEDAFLQMINQIHQ 175
           GNK DL  + +V  +  +  A+T  +   ETSA     N +VE  F+ + +++  
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  276 bits (709), Expect = 2e-95
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE-FAYRNIRVGDKLIKAQ 64
            E  +  +K  +IGD  VGK+  ++R     F  +   T+G        +     +IK  
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64

Query: 65  IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVG 124
           +WDTAGQE+   +   YY GA GA+L +D+T R T +N  +W++E +    +   IV+  
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCA 124

Query: 125 NKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           NK D+ + ++++++    + + +   + E SA    N    FL +       
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  273 bits (700), Expect = 3e-94
 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 19/218 (8%)

Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
                L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 67  DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC----MAIVL 122
           DTAGQERF+++  ++YRGA   +LV+D+T   TF+    W  E     S         V+
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           +GNK DL + +   +           + + ETSA + +NVE AF  +     +   +  L
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 183 CAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220
             +  +                I +D    A   +  C
Sbjct: 183 YNEFPEP---------------IKLDKNERAKASAESC 205

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  273 bits (699), Expect = 5e-94
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 9/196 (4%)

Query: 3   DSYDEECDYLFKAVMIGDSAVGKSNLLSRFAR--DEFRLDSKPTIGVEFAYRNIRVGDKL 60
              D       K  ++G++ VGKS L+S F     +F  D   T GVE     + + D  
Sbjct: 11  KPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT 70

Query: 61  IKAQIW--DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC---S 115
           +  +++  DTAG + ++   S Y+ G   A+LV+D++   +FE+ K W   L+       
Sbjct: 71  VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE 130

Query: 116 SCMAIVLVGNKSDLTHSR-EVNEEEGKILAETEGLYFMETSA-MQNLNVEDAFLQMINQI 173
             +  VLV NK+DL   R +V  +  +  A T  L F + SA     + +  FL +    
Sbjct: 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190

Query: 174 HQTTIQKSLCAKMNDK 189
           ++    K    +   +
Sbjct: 191 YRNYEDKVAAFQDACR 206

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  270 bits (692), Expect = 2e-93
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 6/172 (3%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
             LFK +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC----MAIVLVGN 125
           GQERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 126 KSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQT 176
           K D++  R+V+ EE +      G   + ETSA    NV  AF + + ++  T
Sbjct: 125 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  268 bits (687), Expect = 4e-92
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
           M  +   E    FK V++GD   GK+  + R    EF      T+GVE            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
           IK  +WDTAGQE+F  +   YY  A  A++++D+T R T++N   W R+L   C + + I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 122

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           VL GNK D+   +     +  +    + L + + SA  N N E  FL +  ++   
Sbjct: 123 VLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  258 bits (661), Expect = 1e-88
 Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 11/183 (6%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDK 59
           M          + K +++GDS VGK++L+ R+  D++    K TIG +F  + + V GDK
Sbjct: 1   MSSRKK----NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 60  LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS---- 115
           +   Q+WDTAGQERF+++  ++YRGA   +LVYD+T  ++FEN K W  E     +    
Sbjct: 57  VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSP 116

Query: 116 SCMAIVLVGNKSDLTHS-REVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
                V++GNK D   S + V+E+  + LA++ G +    TSA   +NV+ AF ++    
Sbjct: 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

Query: 174 HQT 176
            Q 
Sbjct: 177 LQQ 179

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  249 bits (637), Expect = 1e-84
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 40/206 (19%)

Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA---- 63
           E    +K V++G+S+VGKS+++ R  +D F  ++  TIG  F    + + D  IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 64  ---------------------------------QIWDTAGQERFRAITSSYYRGALGALL 90
                                             IWDTAGQER+ +I   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 91  VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY 150
           V+DI+   T +  K W+ +L+   SS   I+LV NK D     +V+  E +  A+   L 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLL 179

Query: 151 FMETSAMQNLNVEDAFLQMINQIHQT 176
           F++TSA    N+++ F  +  +I++ 
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  244 bits (625), Expect = 5e-83
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 2/172 (1%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
            +  + D +FK +++G+S VGKS L   F   +     +P    +   R I V  + +  
Sbjct: 15  YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL 74

Query: 64  QIWDTAGQERFRA-ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIV 121
            ++D   Q      +     +     L+V+ +T R +F    + L  LR       + ++
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134

Query: 122 LVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           LVGNKSDL  SREV+ EEG+ LA T     +ETSA  + N  + F   + QI
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  233 bits (598), Expect = 3e-79
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +FK +++G+S VGKS L   F   +     +     +   R I V  + +   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 72  ERFRA-ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDL 129
                 +     +     L+V+ +T R +F    + L  LR       + ++LVGNKSDL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
             SREV+ EEG+ LA T     +ETSA  + N  + F   + QI  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  230 bits (589), Expect = 5e-78
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 3/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++G++AVGKS+++ RF  ++F  + +PTIG  F  + + + +  +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RF ++   YYR A  AL+VYD+T+  +F   + W++EL E  S  + I LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 133 ---REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R+V  EEG+ LAE +GL F ETSA    NV D FL +  +I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  227 bits (580), Expect = 3e-76
 Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
           G    +    L K +M+G   VGKS L  +F  DEF  D +PT    +  + + +  + +
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEV 66

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAI 120
           +  I DTAGQE + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  
Sbjct: 67  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +LVGNKSDL   R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ 
Sbjct: 127 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

Query: 181 S 181
           S
Sbjct: 187 S 187

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  221 bits (566), Expect = 2e-74
 Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + + +  + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  +LVGNKSDL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             R+V+ EE K  A+   + ++ETSA    NV+  F  ++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  219 bits (560), Expect = 2e-73
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L++ V++GD  VGK++L S FA  +   D    +G +   R + V  +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 72  ERFRAITS--SYYRGALGALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSD 128
           E+     S  S  +G    ++VY I  R +FE+  +   +L R   +  + I+LVGNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           L   REV+ EEG+  A      F+ETSA    NV + F  ++ Q+
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  220 bits (562), Expect = 3e-73
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 2/194 (1%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
                +    L K +M+G   VGKS L  +F  DEF  D +PT    +  + + +  + +
Sbjct: 4   NKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEV 62

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAI 120
           +  I DTAGQE + AI  +Y+R   G L V+ IT   +F  T  +  + LR      +  
Sbjct: 63  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +LVGNKSDL   R+V+ EE K  AE   + ++ETSA    NV+  F  ++ +I    ++ 
Sbjct: 123 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 182

Query: 181 SLCAKMNDKTATSN 194
           S       K  +  
Sbjct: 183 SKEKNGKKKRKSLA 196

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  216 bits (553), Expect = 3e-72
 Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 4   SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
           S D       K V++G   VGKS L  +F +  F  D  PTI   +  +   V     + 
Sbjct: 1   SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARL 59

Query: 64  QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVL 122
            I DTAGQE F A+   Y R   G LLV+ I  R +F    K   + LR        +VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           VGNK+DL   R+V   E      +  + + E SA   LNV++AF Q++  + +   Q+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  215 bits (551), Expect = 1e-71
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
              K V++G   VGK++L  +F   EF     PT+   ++ + + +G       + DTAG
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDL 129
           Q+ +  +  S+  G  G +LVY +T   +F+  +   ++L E      + +VLVGNK+DL
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +  REV   EGK LAE+ G  FME+SA +N   +  F ++I +I
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  214 bits (547), Expect = 1e-71
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           ++K +++G   VGKS L   F   E         G  +  R+I V  +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLT 130
           +  R +           ++VY +T + +FE   +   +LR    +  + I+LVGNKSDL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            SREV+ +EG+  A      F+ETSA  + NV+  F  ++ QI
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  214 bits (546), Expect = 7e-71
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-TIGVEFAYRNIRVGDK---LI 61
            E  +  ++ V+IG+  VGKS L + FA     +DS    +G +   R + V  +   +I
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAI 120
              +W+  G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +LVGNKSDL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+      K
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  205 bits (525), Expect = 4e-68
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           ++  + G   VGKS+L+ RF +  FR    PT+   +  + I     +   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLT 130
           +F A+           +LVY IT R + E  K    ++ E       + I+LVGNK D +
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            SREV   E + LA T    FMETSA  N NV++ F +++N  
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  205 bits (523), Expect = 1e-67
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
              K  ++G  +VGKS+L  +F   +F     PTI   F  + I V  +    Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDL 129
           Q+ +     +Y     G +LVY +T   +FE  K    +L +      + I+LVGNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R ++ EEGK LAE+    F+E+SA +N    D F ++I + 
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  204 bits (522), Expect = 2e-67
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-TIGVEFAYRNIRVGDK---LIKAQIWD 67
            ++ V+IG+  VGKS L + FA     +DS    +G +   R + V  +   +I   +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNK 126
             G+  +  +     +     L+VY IT RA+FE   +   +LR    +  + I+LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123

Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKM 186
           SDL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+      K    + 
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183

Query: 187 NDKT 190
               
Sbjct: 184 LAYQ 187

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  203 bits (519), Expect = 4e-67
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
              +K V++GD  VGKS L  +F +  F  D  PTI   +  ++  + ++     + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTA 74

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSD 128
           GQE F A+   Y R   G L+VY +T +A+FE+  ++ + +          ++LV NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQMINQI 173
           L H R+V  ++GK +A    + ++ETSA    LNV+  F  ++  I
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  203 bits (518), Expect = 9e-67
 Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           E    ++ V+ G   VGKS+L+ RF +  FR    PTI   +  + I     +   QI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITD 62

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGN 125
           T G  +F A+           +LV+ +T + + E      + + +   S   + ++LVGN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
           K D T  REV+  E + +A+     FMETSA  N NV++ F +++    +  +  ++  K
Sbjct: 123 KCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGK 181

Query: 186 MNDKTATSN 194
            + K   ++
Sbjct: 182 RSGKQKRTD 190

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  201 bits (514), Expect = 2e-66
 Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEF--RLDSKPTIGVEFAYRNIRVGDK---LIKAQIWD 67
            K +++G++  GK+ LL +  + +         T+G++     I++ DK    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRAT-FENTKKWLRELREFCSSCMAIVLVGNK 126
            AG+E F +    +       L VYD+++     +  K WL  ++   SS   ++LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 127 SDLTHSRE---VNEEEGKILAETEGL-----YFMETSAMQNLNVEDAFLQMINQIHQTTI 178
            D++  ++      +  K L    G      Y    +  ++  +      +IN+     I
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181

Query: 179 Q 179
           +
Sbjct: 182 R 182

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  199 bits (509), Expect = 9e-66
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +F    F     PTI  +F  + I V       +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTH 131
           +F ++   Y +   G +LVY +  + +F++ K    ++        + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            REV+  EG+ LAE  G  FMETSA     V++ F +++ Q+
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  199 bits (508), Expect = 1e-65
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +  ++ F  +  PTI   +  + + +  +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTH 131
            + A+   Y R   G L V+ I    +FE+  ++  +++    S  + +VLVGNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            R V   + + LA + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  197 bits (504), Expect = 1e-64
 Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +  ++ F  +  PTI   +  + + +  +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTH 131
            + A+   Y R   G L V+ I    +FE+   +  +++    S    +VLVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTA 191
           SR V+ ++ + LA + G+ F+ETSA     V+DAF  ++ +I +   + S   K   K +
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182

Query: 192 TSNC 195
            + C
Sbjct: 183 KTKC 186

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  196 bits (500), Expect = 2e-64
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +F +  F     PTI   +  + + V  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
           +F A+   Y +   G  LVY IT ++TF + +    + LR   +  + ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 132 SREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            R V +E+G+ LA +     F+E+SA   +NV + F  ++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  196 bits (501), Expect = 3e-64
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +  ++ F  +  PTI   +  + + +  +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTH 131
            + A+   Y R   G L V+ I    +F +   +  +++    S    +VLVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
           +R V+ ++   LA++ G+ F+ETSA     VEDAF  ++ +I Q  ++K
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  193 bits (494), Expect = 3e-63
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
                  ++G    GKS L  +F    F  +  P +   ++     V  + +  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTA 77

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA---IVLVGNK 126
             +  R     Y   A   L+VY +  R +F+++  +L  L             +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFLQMINQI 173
            D+   R+V + EG  LA   G  F E SA  +  +V+  F + + + 
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  193 bits (494), Expect = 4e-63
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
               K  + G + VGKS L+ RF    F  +  PT+   +      + D+++  +I DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTA 84

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSD 128
           GQE        + R   G +LVYDIT R +FE        L E      + ++LVGNK+D
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQMINQIHQTTIQK 180
           L HSR+V+ EEG+ LA      F E SA     N+ + F ++  ++ +  + +
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  186 bits (473), Expect = 3e-56
 Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 12/184 (6%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF--------AYR 52
                        K  +IGD   GK++LL +   + F      T G+             
Sbjct: 30  RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGL 89

Query: 53  NIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE 112
                 K      WD  GQE   A    +   +   +L+ D     T  N   WLR + +
Sbjct: 90  ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEK 146

Query: 113 FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172
           +      +++V NK D   S  + +++           F   S      VE     + + 
Sbjct: 147 YGGKS-PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205

Query: 173 IHQT 176
           +   
Sbjct: 206 VLHP 209

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  173 bits (440), Expect = 4e-55
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 13/179 (7%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
             +  ++GD+  GKS+L+ RF    +    + T   ++  + + V  +     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-----CMAIVLVGNK 126
              +     +   A   + V+ +    +F+   +   +L            +A+V   ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 127 SDLTHSREVNEEEGKIL-AETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCA 184
              +  R V +   + L A+ +   + ET A   LNV+  F ++  ++     Q+ L A
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  169 bits (430), Expect = 1e-53
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 13/166 (7%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
            K  ++G+ + GKS L+ R+    +  +  P  G    ++  I V  +     I D  G 
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG---RFKKEIVVDGQSYLLLIRDEGGP 77

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDL- 129
              +     +       + V+ +    +F+    +   L  F  +S + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 130 -THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
             + R +++   + L+       + ET A   LNVE  F  +  ++
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  157 bits (398), Expect = 1e-48
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%)

Query: 2   GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
           G    E      K V++GD AVGK+ LL  F++ E      PT+   F++  ++  ++  
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEF 71

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
              +WDTAGQE +  +    Y  +   LL + +  R +F+N   KW  E++ +  +    
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KT 130

Query: 121 VLVGNKSDL--THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
           VLVG K DL    S +V ++EG  L +  G   ++E S++  + + + F + ++ I
Sbjct: 131 VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  148 bits (376), Expect = 2e-45
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V +GD AVGK+ LL  +  + F  D  PT+   F+  N+ V    +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +    YRGA   +L + +  +A++EN   KW+ EL+ +      IVLVG K DL  
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-PIVLVGTKLDLRD 126

Query: 132 SRE----------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
            ++          +   +G+ L +  G   ++E S+    NV+  F   I  +
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  145 bits (368), Expect = 6e-44
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD   GK++LL  FA   F     PT+   +   N++V  K +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH 131
            +  +   +Y  A   LL +D+T   +F+N   +W  E+  FC     I++VG K+DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKV-PIIVVGCKTDLRK 152

Query: 132 SRE------------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
            +             V    G+ +A + G   ++E SA  + NV   F +  
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  141 bits (358), Expect = 2e-42
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
               K V++GD A GK+ LL  F++D+F     PT+  E    +I V  K ++  +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSD 128
           GQE +  +    Y      L+ + I    + EN   KW  E++ FC +   I+LVGNK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV-PIILVGNKKD 140

Query: 129 LTHSRE------------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
           L                 V  EEG+ +A     + ++E SA     V + F    
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  141 bits (356), Expect = 3e-42
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD A GK+ LL  F++DEF     PT+   +   +I V  K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  +    Y      L+ + +    + EN   KW+ E++ FC +   I+LV NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNV-PIILVANKKDLRSD 144

Query: 133 RE------------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
                         V  ++G+ +A     Y ++E SA     V + F    
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  140 bits (356), Expect = 4e-42
 Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V +GD AVGK+ +L  +  ++F  D  PT+   F+  N+ V  +++   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQE 68

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    YRGA   +L + +  +A++EN  KKW+ ELR F  +   IVLVG K DL  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNV-PIVLVGTKLDLRD 127

Query: 130 ------THSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
                  H+  +   +G+ L +  G   ++E S+    NV+  F   I  + Q   +K +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187

Query: 183 CAKMNDKTATSNCN 196
             +       S C+
Sbjct: 188 PRR-RKNHRRSGCS 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  139 bits (353), Expect = 7e-42
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 16/172 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+  +    N+ V  K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y      L+ + +   A+FEN   KW  E+R  C +   I+LVG K DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148

Query: 130 ----------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
                          +   +G  +A+  G   ++E SA+    ++  F + I
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  135 bits (342), Expect = 3e-40
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 17/180 (9%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           D   +   K V++GDS  GK+ LL  FA+D F  +  PT+   +   +  +  + I+  +
Sbjct: 22  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSL 80

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVG 124
           WDT+G   +  +    Y  +   L+ +DI+R  T ++   KW  E++EFC +   ++LVG
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVG 139

Query: 125 NKSDLTHSRE------------VNEEEGKILAETEGLY-FMETSAMQNLN-VEDAFLQMI 170
            KSDL                 V+ ++G  +A+  G   ++E SA+Q+ N V D F    
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 199

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  133 bits (337), Expect = 1e-39
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 17/172 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+   +   +  +  + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +  +    Y  +   L+ +DI+R  T ++   KW  E++EFC +   ++LVG KSDL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRTD 126

Query: 133 RE------------VNEEEGKILAETEGLY-FMETSAMQNLN-VEDAFLQMI 170
                         V+ ++G  +A+  G   ++E SA+Q+ N V D F    
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 178

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  132 bits (334), Expect = 6e-39
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 16/171 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK++L+  +  + +  +  PT   +     + V  + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
           F  +    Y      LL + +   ++F+N   KW+ E+R  C     I+LVG +SDL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139

Query: 130 ---------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
                       + V EE  K+LAE      ++E SA+   N+++ F   I
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  131 bits (331), Expect = 1e-38
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GD AVGK+ LL  +  + F  +  PT+  +    N+ V  K +   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 74  FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
           +  +    Y     +L+ + +   A+FEN   KW  E+R  C +   I+LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 124

Query: 130 ---------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMIN 171
                         +   +G  +A+  G   ++E SA+    ++  F + I 
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  131 bits (331), Expect = 1e-38
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
             + K V++GD AVGK+ LL  +A D F  +  PT+  +    ++ VG K     ++DTA
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 74

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSD 128
           GQE +  +    Y      L+ + +   A+F+N K +W+ EL+E+  +    +L+G + D
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV-PFLLIGTQID 133

Query: 129 LTHSRE------------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMI 170
           L    +            +  E+G+ LA+  G   ++E SA+    ++  F + I
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  126 bits (318), Expect = 2e-36
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD   GK+ +L   A+D +     PT+   +    +   ++ ++  +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL-- 129
            +  +    Y  +   LL +DI+R  T ++  KKW  E+ ++C S   ++L+G K+DL  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLLIGCKTDLRT 145

Query: 130 ----------THSREVNEEEGKILAETEGLY-FMETSA-MQNLNVEDAFLQMIN 171
                          ++ E+G  +A+  G   ++E SA     ++   F     
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  120 bits (302), Expect = 1e-33
 Identities = 48/220 (21%), Positives = 72/220 (32%), Gaps = 66/220 (30%)

Query: 19  GDSAVGKSNLLSRFAR---DEFRLDSKPTIG-VEFAYRNIRVGDKL-------------- 60
           G   +GKS L +RF R   DEF LD    +   +F  R +     L              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 61  IKAQIW-------DTAGQERFRAITSSYYRGAL--------------------------- 86
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 87  ----------GALLVYDITR--RATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSR 133
                     G LL  D++R     F++  K++  L    +     IV+V  K D    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            + +     L++ + L  +ETSA  N+NV+ AF  ++  I
Sbjct: 215 YIRDAHTFALSK-KNLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  103 bits (258), Expect = 1e-26
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 1   MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
             ++ DE    L K V++GD AVGK+ LL  +  + F  +  PT+  +    N+ V  K 
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP 202

Query: 61  IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMA 119
           +   +WDTAG E +  +    Y      L+ + +   A+F +   KW  E+R  C +   
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN-TP 261

Query: 120 IVLVGNKSDL------------THSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
           I+LVG K DL                 +   +G  +A+  G   ++E SA+    ++  F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 83.6 bits (207), Expect = 4e-20
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 17/177 (9%)

Query: 13  FKAVMIGDSAVGKSNLL---SRFARDEFRLD-------SKPTIGVEFAYRNIR-VGDKLI 61
           FK V  G    GK+  L        +  + +        + T+  +F   +I  V     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 62  KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCM 118
           +  ++   GQ  + A      RG  G + V D        N +        L E+  +  
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 119 AIVLV--GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            + +V   NK DL  +  V E    ++        +E  A +   V +   ++   +
Sbjct: 135 DVPIVIQVNKRDLPDALPV-EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 26/171 (15%)

Query: 16  VMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQ 71
            ++G   + GK+  ++  A  +F  D  PT+G  +      N+         ++WD  GQ
Sbjct: 26  TLVGLQYS-GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV-------TIKLWDIGGQ 77

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSDLT 130
            RFR++   Y RG    + + D   +   E +K  L  L +        VLV GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 131 HSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
            + +  E     L E   L             S  +  N++     +I   
Sbjct: 138 GALDEKE-----LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
            + +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +WD  
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNI-------CFTVWDVG 81

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQ++ R +   Y++   G + V D   R   + +   L+++ +      A++LV  NK D
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 LTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           + ++  V+E     L +  GL        Y   T A Q   + D    + +++
Sbjct: 142 MPNAMPVSE-----LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 25/173 (14%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
            + +++G    GK+ +L R    E  + + PTIG  VE   Y+N+       K Q+WD  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTYKNL-------KFQVWDLG 59

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           G    R     YY      + V D   R     +K  L  + E      AI++V  NK D
Sbjct: 60  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 LTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           +  +   +E     +A + GL           +TSA +   +++A   ++  +
Sbjct: 120 MEQAMTSSE-----MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 29/177 (16%)

Query: 13  FKAVMIG-DSAVGKSNLLSRFARDEFRLDS-KPTIG--VE-FAYRNIRVGDKLIKAQIWD 67
              + +G D++ GK+ ++++      +  +  PTIG  +E F   ++          ++D
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSF-------TVFD 73

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL--REFCSSCMAIVLV-G 124
            +GQ R+R +   YY+     + V D + R      K+ L  L            +L   
Sbjct: 74  MSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133

Query: 125 NKSDLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           NK DL  +    +     +++   L        +   + A++   +++    + +QI
Sbjct: 134 NKMDLRDAVTSVK-----VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 31/191 (16%)

Query: 1   MGDSYDEECDYLF------KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAY 51
           MG+ +    D L+      + +++G    GK+ +L R    E  + +KPTIG  VE  +Y
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY 59

Query: 52  RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
           +N+       K  +WD  GQ   R     YY      + V D T +       K L  + 
Sbjct: 60  KNL-------KLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 112

Query: 112 EFCSSCMAIVLV-GNKSDLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNV 162
           +      A +LV  NK D   +   +E     +++   L          + +SA++   +
Sbjct: 113 QEEELQDAALLVFANKQDQPGALSASE-----VSKELNLVELKDRSWSIVASSAIKGEGI 167

Query: 163 EDAFLQMINQI 173
            +    +I+ I
Sbjct: 168 TEGLDWLIDVI 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 27/174 (15%)

Query: 13  FKAVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDT 68
            + +M+G D+A GK+++L R    +  + + PT+G  +E   Y+NI         ++WD 
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDV-VTTVPTVGVNLETLQYKNI-------SFEVWDL 73

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKS 127
            GQ   R     Y+      + V D T R      K  L  L +      +++L+  NK 
Sbjct: 74  GGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQ 133

Query: 128 DLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           DL  +    E     +AE  G+          +++S+     + +    ++ ++
Sbjct: 134 DLPDAASEAE-----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 25/173 (14%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
            K +++G    GK+ +L +F+ +E  + + PTIG  VE     N R         +WD  
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIG 68

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQE  R+  ++YY      ++V D T R     T++ L ++        A +L+  NK D
Sbjct: 69  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 LTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           +     V E     +++   L        +     A+    +      M++++
Sbjct: 129 VKECMTVAE-----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
            + +M+G    GK+ +L +F  ++      PT+G  ++   +R  ++        IWD  
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKL-------NIWDVG 70

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           GQ+  R+   +Y+    G + V D   R   ++ ++ L+ L        A +L+  NK D
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 LTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           L  +   N      + E   L             SA+   ++      +++ I
Sbjct: 131 LPGALSCNA-----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 65.7 bits (161), Expect = 8e-14
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 25/170 (14%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTAGQE 72
           +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +WD  GQ+
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNI-------SFTVWDVGGQD 55

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSDLTH 131
           + R +   Y++   G + V D   R      ++ L  +        A++LV  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 132 SREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           +    E     + +  GL        Y   T A     + +    + NQ+
Sbjct: 116 AMNAAE-----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 27/174 (15%)

Query: 13  FKAVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDT 68
            K +++G D+A GK+ +L +F+ +E  + + PTIG  VE     N R         +WD 
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDI 72

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKS 127
            GQE  R+  ++YY      ++V D T R     T++ L ++        A +L+  NK 
Sbjct: 73  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 132

Query: 128 DLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           D+     V E     +++   L        +     A+    +      M++++
Sbjct: 133 DVKECMTVAE-----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 27/174 (15%)

Query: 13  FKAVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDT 68
            + +++G D+A GK+ LL + A ++      PT G  ++    +  ++        +WD 
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKL-------NVWDI 67

Query: 69  AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKS 127
            GQ + R    SY+      + V D   R  FE T + L EL E        VL+  NK 
Sbjct: 68  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127

Query: 128 DLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMINQI 173
           DL  +   +E     +AE   L             SA+    V+D    +   +
Sbjct: 128 DLLTAAPASE-----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 14  KAVMIGDSAVGKSNLLSRF-----ARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDT 68
           + +++G    GKS++           +   L  + T  +     +       +  QIWD 
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFL--ESTNKIYKDDISN---SSFVNFQIWDF 76

Query: 69  AGQERFRAITS---SYYRGALGALLVYDITRRAT--FENTKKWLRELREFCSSCMAIVLV 123
            GQ  F   T      +RG    + V D               + +  +        V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 124 GNKSDLTH-----------SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172
            +K D               +  N++      E   L F  TS   + ++ +AF +++ +
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQK 194

Query: 173 I 173
           +
Sbjct: 195 L 195

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 34/180 (18%)

Query: 14  KAVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
           K + +G D+A GK+ LL     D      +PT     E  A  NI+          +D  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRL-ATLQPTWHPTSEELAIGNIKF-------TTFDLG 75

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           G  + R +   Y+    G + + D      F+  +  L  L           ++ GNK D
Sbjct: 76  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135

Query: 129 LTHSREVNEEEGKILAETEGL---------------YFMETSAMQNLNVEDAFLQMINQI 173
             ++    E     L    GL                    S +      +AF  +   I
Sbjct: 136 APNAVSEAE-----LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 14  KAVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
           K V +G D+A GK+ LL     D       PT+    E      +           +D  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRL-GQHVPTLHPTSEELTIAGMTF-------TTFDLG 77

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
           G  + R +  +Y     G + + D         +K+ L  L    +     +L+ GNK D
Sbjct: 78  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 137

Query: 129 LTHSREVNE 137
              +     
Sbjct: 138 RPEAISEER 146

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 37/183 (20%)

Query: 9   CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQI 65
                + +M+G  A GK+ +L +    E  + + PTIG  VE   Y+NI          +
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNI-------SFTV 213

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMA 119
           WD  GQ++ R +   Y++   G + V D   R      ++ L       ELR+      A
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD------A 267

Query: 120 IVLV-GNKSDLTHSREVNEEEGKILAETEGL--------YFMETSAMQNLNVEDAFLQMI 170
           ++LV  NK DL ++    E     + +  GL        Y   T A     + +    + 
Sbjct: 268 VLLVFANKQDLPNAMNAAE-----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322

Query: 171 NQI 173
           NQ+
Sbjct: 323 NQL 325

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VEFAYRNIRVGDKLIKAQIWDTAGQER 73
           ++ G    GK++LL+    D  R  +  +        Y    V        + D  G  +
Sbjct: 52  IIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEPLSAADYDGSGV-------TLVDFPGHVK 103

Query: 74  FRAITSSYYRGALGAL--LVYDI---TRRATFENTKKWLREL---REFCSSCMAIVLV-G 124
            R   S Y +     +  L++ +           T ++L ++    E        +L+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 125 NKSDLTHSREVNE 137
           NKS+L  +R  ++
Sbjct: 164 NKSELFTARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VEFAYRNIRVGDKLIKAQIWDTAGQER 73
           ++ G    GK++LL+    D  R  +  +        Y    V        + D  G  +
Sbjct: 16  IIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEPLSAADYDGSGV-------TLVDFPGHVK 67

Query: 74  FRAITSSYYRGALGAL--LVYDI---TRRATFENTKKWLREL---REFCSSCMAIVLV-G 124
            R   S Y +     +  L++ +           T ++L ++    E        +L+  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 125 NKSDLTHSREVNE 137
           NKS+L  +R  ++
Sbjct: 128 NKSELFTARPPSK 140

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 31/193 (16%)

Query: 14  KAVMIGDSAVGKSNLLSRF-----ARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDT 68
           K +++G S  GKS++ S       A D  RL    TI VE ++         +   +WD 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRL--GATIDVEHSHLRF---LGNMTLNLWDC 59

Query: 69  AGQERFRAIT-----SSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAI 120
            GQ+ F            ++     + V+D+      ++ + +   L++LR++       
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 121 VLVGNKSDLTHSREVNEEEGKILAET---------EGLYFMETSAMQNLNVEDAFLQMIN 171
           VL+ +K DL    +  E    ++              L    TS   + ++  A+ Q++ 
Sbjct: 120 VLL-HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW-DESLYKAWSQIVC 177

Query: 172 QI--HQTTIQKSL 182
            +  + +  Q +L
Sbjct: 178 SLIPNMSNHQSNL 190

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIG---VEFAYRNIRVGDKLIKAQIWDTAGQE 72
           + +G    GK+ L  R    ++R D++ +I      +   N    ++     + D  G E
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNN----NRGNSLTLIDLPGHE 65

Query: 73  RFRA-ITSSYYRGALGALLVYDITRRA-TFENTKKWLREL---REFCSSCMAIVLVGNKS 127
             R  +   +   A   + V D        ++  ++L ++        +  ++++  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 128 DLTHSREVNE 137
           D+  ++    
Sbjct: 126 DIAMAKSAKL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 56/226 (24%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE-FAYRNIRVGDKLIKAQ 64
            EE D++  +           + +S   R  + L SK    V+ F      V + L    
Sbjct: 48  KEEIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKF------VEEVLRINY 91

Query: 65  IW-DTAGQERFRA---ITSSY--YRGAL---GALLV-YDITRRATFENTKKWLRELREFC 114
            +  +  +   R    +T  Y   R  L     +   Y+++R   +   ++ L ELR   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--- 148

Query: 115 SSCMAIVLVG----NKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
                +++ G     K+ +    +V             ++++    ++N N  +  L+M+
Sbjct: 149 -PAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEML 202

Query: 171 NQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQ 216
                      L  ++ D   TS  ++        NI   + + + 
Sbjct: 203 Q---------KLLYQI-DPNWTSRSDH------SSNIKLRIHSIQA 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.98
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.86
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.83
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.81
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.73
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.71
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.6
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.51
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.46
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.46
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.36
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.29
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.26
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.14
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.92
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.85
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.83
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.69
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.63
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.42
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.25
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.23
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.13
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.13
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.93
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.86
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.79
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.59
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.25
2xxa_A	433	Signal recognition particle protein; protein trans	97.24
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.15
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.08
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.0
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.99
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.98
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.97
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.95
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.91
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.9
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.89
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.88
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.86
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.81
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.81
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.78
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.77
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.76
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.75
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.74
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.73
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.72
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.7
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.69
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.68
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.66
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.64
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.64
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.63
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.62
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.61
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.57
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.57
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.57
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.57
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.56
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.56
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.56
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.54
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.53
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.53
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.52
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.52
1g6h_A	257	High-affinity branched-chain amino acid transport	96.51
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.51
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.51
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.5
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.5
3co5_A	143	Putative two-component system transcriptional RES	96.5
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.5
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.49
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.48
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.48
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.47
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.46
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.46
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.45
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.45
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.45
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.43
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.42
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.42
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.42
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.41
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.41
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.4
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.4
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.38
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.38
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.37
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.36
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.36
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.34
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.33
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.27
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.27
1via_A	175	Shikimate kinase; structural genomics, transferase	96.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.25
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.25
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.24
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.24
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.23
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.23
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.21
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.2
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.18
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.18
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.17
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.17
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.16
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.16
3uc9_A	233	Increased recombination centers protein 6; rossman	96.15
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.15
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.14
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.14
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.14
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.12
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.11
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.1
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.09
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.08
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.07
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.06
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.05
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.05
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.03
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.02
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.02
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.01
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.01
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.01
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.99
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.99
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.98
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.98
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.98
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.95
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.94
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.93
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.92
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.91
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.9
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.9
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.88
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.87
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.86
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.85
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.84
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.8
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.8
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.79
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.75
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.68
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.66
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.66
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.65
3bos_A	242	Putative DNA replication factor; P-loop containing	95.63
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.61
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.61
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.6
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.59
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.58
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.57
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.56
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.52
2og2_A	359	Putative signal recognition particle receptor; nuc	95.5
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.49
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.46
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.42
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.41
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.4
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.39
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.36
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.24
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.24
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.21
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.21
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.2
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.19
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.13
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.12
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.1
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.07
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.04
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.01
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.0
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.99
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.98
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.93
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.91
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.9
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.87
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.82
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.8
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.78
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.76
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.75
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.73
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.71
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.64
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.63
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.63
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.62
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.59
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.59
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.58
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.58
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.56
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.54
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.49
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.47
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.46
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.42
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.41
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.4
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.38
2qgz_A	308	Helicase loader, putative primosome component; str	94.37
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.36
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.33
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.29
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.29
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.21
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.19
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.16
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.14
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.11
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.1
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.08
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.07
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.06

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.2e-43  Score=271.51  Aligned_cols=168  Identities=39%  Similarity=0.647  Sum_probs=146.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ..+.+||+|+|++|||||||+++|..+.|...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++.+|+.+..|+..+......++|++|||||+|+.+.+.++.++++.++..++++|+++||++|.||+++|+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998887777999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027503          169 MINQIHQT  176 (222)
Q Consensus       169 l~~~i~~~  176 (222)
                      |++.+...
T Consensus       170 i~~~i~~~  177 (216)
T 4dkx_A          170 VAAALPGM  177 (216)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhh
Confidence            99887644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=5.4e-37  Score=235.75  Aligned_cols=176  Identities=48%  Similarity=0.801  Sum_probs=162.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            57889999999999999999999999999988888999999988889999988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||++++.++..+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887766799999999999988777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhh
Q 027503          168 QMINQIHQTTIQKSLC  183 (222)
Q Consensus       168 ~l~~~i~~~~~~~~~~  183 (222)
                      +|++.+.+........
T Consensus       164 ~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          164 TMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999998776555443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-37  Score=239.34  Aligned_cols=178  Identities=56%  Similarity=0.878  Sum_probs=149.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ....++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus         7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   86 (223)
T 3cpj_B            7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA   86 (223)
T ss_dssp             ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred             CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence            34557899999999999999999999999998888888888888888899999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B           87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA  166 (223)
T ss_dssp             CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876667999999999999877778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhh
Q 027503          166 FLQMINQIHQTTIQKSLC  183 (222)
Q Consensus       166 ~~~l~~~i~~~~~~~~~~  183 (222)
                      |++|++.+.+....+...
T Consensus       167 ~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          167 FEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             HHHHHHHHTTCC------
T ss_pred             HHHHHHHHHHHhhhcccC
Confidence            999999998776655543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=225.36  Aligned_cols=171  Identities=33%  Similarity=0.520  Sum_probs=151.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            445689999999999999999999999988777777765544 4667788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +++|||++++.++..+..|+..+..... .++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998877653 569999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027503          167 LQMINQIHQTTIQ  179 (222)
Q Consensus       167 ~~l~~~i~~~~~~  179 (222)
                      ++|++.+.+++..
T Consensus       169 ~~l~~~i~~~~~~  181 (206)
T 2bov_A          169 FDLMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccc
Confidence            9999999876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=3.1e-35  Score=225.72  Aligned_cols=174  Identities=34%  Similarity=0.614  Sum_probs=152.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ...+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45688999999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCCCH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNLNV  162 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  162 (222)
                      +|+|||++++.++..+..|+..+.....    .++|+++|+||+|+. .+.+..+.+..++. ..+++++++||++|.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    458999999999997 45667778888887 67789999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q 027503          163 EDAFLQMINQIHQTTIQKSL  182 (222)
Q Consensus       163 ~~~~~~l~~~i~~~~~~~~~  182 (222)
                      +++|++|++.+.+.......
T Consensus       163 ~~l~~~l~~~~~~~~~~~~~  182 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVEL  182 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccc
Confidence            99999999999877655544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.6e-35  Score=223.48  Aligned_cols=176  Identities=42%  Similarity=0.725  Sum_probs=158.9

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      ....++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus        18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (201)
T 2ew1_A           18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR   97 (201)
T ss_dssp             ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred             CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence            34566789999999999999999999999999988888899988988889999998899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A           98 SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE  177 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999988877779999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 027503          164 DAFLQMINQIHQTTIQ  179 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~  179 (222)
                      ++|+++++.+.+...+
T Consensus       178 ~l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          178 KLFLDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=218.16  Aligned_cols=175  Identities=49%  Similarity=0.783  Sum_probs=160.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34567899999999999999999999999999888889999999999999999989999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998887777999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 027503          166 FLQMINQIHQTTIQK  180 (222)
Q Consensus       166 ~~~l~~~i~~~~~~~  180 (222)
                      |++|++.+.+.....
T Consensus       170 ~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          170 FMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998765543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3.7e-34  Score=217.48  Aligned_cols=175  Identities=52%  Similarity=0.808  Sum_probs=156.8

Q ss_pred             CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503            3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY   82 (222)
Q Consensus         3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   82 (222)
                      ...+.+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..++
T Consensus        12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   91 (191)
T 2a5j_A           12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY   91 (191)
T ss_dssp             CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence            45567778999999999999999999999999998888888888888888899999889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      +.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+
T Consensus        92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999998876667999999999999876778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027503          163 EDAFLQMINQIHQTT  177 (222)
Q Consensus       163 ~~~~~~l~~~i~~~~  177 (222)
                      +++|++|++.+.++.
T Consensus       172 ~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          172 EEAFINTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=3.7e-34  Score=216.10  Aligned_cols=173  Identities=49%  Similarity=0.773  Sum_probs=159.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..++..+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            57889999999999999999999999999888888888888888888999988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999988887767799999999999987677888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 027503          168 QMINQIHQTTIQK  180 (222)
Q Consensus       168 ~l~~~i~~~~~~~  180 (222)
                      ++++.+.+.....
T Consensus       166 ~l~~~~~~~~~~~  178 (186)
T 2bme_A          166 QCARKILNKIESG  178 (186)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhhc
Confidence            9999988765443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=9.4e-34  Score=217.05  Aligned_cols=172  Identities=41%  Similarity=0.751  Sum_probs=158.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      +++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||.+.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            46788999999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988776679999999999998877888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027503          167 LQMINQIHQTTI  178 (222)
Q Consensus       167 ~~l~~~i~~~~~  178 (222)
                      ++|.+.+.+...
T Consensus       163 ~~l~~~i~~~~~  174 (203)
T 1zbd_A          163 ERLVDVICEKMS  174 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999886543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=9.3e-34  Score=214.83  Aligned_cols=173  Identities=41%  Similarity=0.757  Sum_probs=158.7

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      +.....++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.
T Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            45667788999999999999999999999999988888888888888888888888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK  173 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999988766679999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|++|++.+.+.
T Consensus       174 ~l~~~l~~~i~~~  186 (189)
T 2gf9_A          174 QVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.6e-34  Score=217.68  Aligned_cols=173  Identities=47%  Similarity=0.817  Sum_probs=129.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      .++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (183)
T 2fu5_C            3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   82 (183)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence            35678999999999999999999999998887777788888888888888998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988766679999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027503          167 LQMINQIHQTTIQ  179 (222)
Q Consensus       167 ~~l~~~i~~~~~~  179 (222)
                      ++|++.+.+....
T Consensus       163 ~~l~~~i~~~~~~  175 (183)
T 2fu5_C          163 FTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998865443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.8e-34  Score=218.82  Aligned_cols=172  Identities=45%  Similarity=0.771  Sum_probs=148.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ++++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            46678899999999999999999999999998877888888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVED  164 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  164 (222)
                      |++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...++ +++++||++|.|+++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887766799999999999987677888899999999999 999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027503          165 AFLQMINQIHQTT  177 (222)
Q Consensus       165 ~~~~l~~~i~~~~  177 (222)
                      +|++|++.+.+..
T Consensus       183 l~~~l~~~i~~~~  195 (201)
T 2hup_A          183 AFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=215.93  Aligned_cols=174  Identities=52%  Similarity=0.896  Sum_probs=157.7

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      ...+++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||.+.+..++..++.
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34566788999999999999999999999999988888888888888888889998999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999998887766679999999999998767778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027503          164 DAFLQMINQIHQTT  177 (222)
Q Consensus       164 ~~~~~l~~~i~~~~  177 (222)
                      ++|++|++.+.+..
T Consensus       177 ~l~~~l~~~i~~~~  190 (193)
T 2oil_A          177 LAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=212.22  Aligned_cols=174  Identities=43%  Similarity=0.720  Sum_probs=156.3

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      .+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            46788999999999999999999999999988888899999999899999999899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998877654 48999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhh
Q 027503          167 LQMINQIHQTTIQKS  181 (222)
Q Consensus       167 ~~l~~~i~~~~~~~~  181 (222)
                      ++|.+.+.+.+..+.
T Consensus       163 ~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          163 NCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999887765543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=9.3e-34  Score=214.85  Aligned_cols=178  Identities=37%  Similarity=0.649  Sum_probs=155.7

Q ss_pred             CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE-EEEEEECCe---------EEEEEEEeCCCh
Q 027503            2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA-YRNIRVGDK---------LIKAQIWDTAGQ   71 (222)
Q Consensus         2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~   71 (222)
                      |.|+..++++.+||+|+|++|||||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+|||||+
T Consensus         1 ~~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   80 (195)
T 3bc1_A            1 GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL   80 (195)
T ss_dssp             -----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred             CCCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence            4566778899999999999999999999999999888788888888777 666777665         689999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY  150 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (222)
                      +.+..++..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++
T Consensus        81 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (195)
T 3bc1_A           81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP  160 (195)
T ss_dssp             GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999998877664 56999999999999876778888899999999999


Q ss_pred             EEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503          151 FMETSAMQNLNVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  179 (222)
                      ++++||++|.|++++|++|.+.+.+....
T Consensus       161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          161 YFETSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998865443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-34  Score=218.78  Aligned_cols=176  Identities=48%  Similarity=0.745  Sum_probs=147.5

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      ...+++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   96 (200)
T 2o52_A           17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   96 (200)
T ss_dssp             -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence            34566788999999999999999999999999888888888888888888899998899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A           97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  176 (200)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999888776679999999999998767788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 027503          164 DAFLQMINQIHQTTIQ  179 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~  179 (222)
                      ++|++|++.+.+....
T Consensus       177 ~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          177 EAFLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998875543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.4e-33  Score=211.23  Aligned_cols=170  Identities=52%  Similarity=0.828  Sum_probs=155.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..+.++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (179)
T 1z0f_A            9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   88 (179)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence            34567899999999999999999999999998888888888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++
T Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A           89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  168 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998887677999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          166 FLQMINQIHQ  175 (222)
Q Consensus       166 ~~~l~~~i~~  175 (222)
                      |+++++.+.+
T Consensus       169 ~~~l~~~i~~  178 (179)
T 1z0f_A          169 FLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.7e-33  Score=210.32  Aligned_cols=171  Identities=40%  Similarity=0.696  Sum_probs=153.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      .......+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus         6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   85 (181)
T 2efe_B            6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA   85 (181)
T ss_dssp             ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred             CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence            34567889999999999999999999999998888888888888888888998889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  165 (181)
T 2efe_B           86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI  165 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999999999999998877667999999999999877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027503          166 FLQMINQIHQT  176 (222)
Q Consensus       166 ~~~l~~~i~~~  176 (222)
                      |++|++.+.+.
T Consensus       166 ~~~l~~~~~~~  176 (181)
T 2efe_B          166 FYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHTCC--
T ss_pred             HHHHHHHHHhc
Confidence            99998877543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1e-33  Score=210.43  Aligned_cols=168  Identities=38%  Similarity=0.699  Sum_probs=146.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            35688999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999999988776655699999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027503          168 QMINQIHQ  175 (222)
Q Consensus       168 ~l~~~i~~  175 (222)
                      +|++.+.+
T Consensus       162 ~l~~~~~~  169 (170)
T 1z08_A          162 DLCKRMIE  169 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=208.74  Aligned_cols=171  Identities=43%  Similarity=0.719  Sum_probs=146.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      ...++..++|+|+|++|||||||+++|.+..+. ..+.++.+.++....+..++..+.+.+|||||++.+..++..++..
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            345678999999999999999999999998875 4567888888888888889988999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +|++|+|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999999887767799999999999988777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027503          165 AFLQMINQIHQT  176 (222)
Q Consensus       165 ~~~~l~~~i~~~  176 (222)
                      +|+++.+.+.+.
T Consensus       164 l~~~l~~~~~~~  175 (180)
T 2g6b_A          164 AFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999988644

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=213.84  Aligned_cols=171  Identities=40%  Similarity=0.769  Sum_probs=148.1

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      ...+.++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.
T Consensus        19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (192)
T 2il1_A           19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS   98 (192)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            34566789999999999999999999999998888888888888888889999988999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVE  163 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  163 (222)
                      +|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..++++.++... +++++++||++|.|++
T Consensus        99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A           99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            999999999999999999999999988887777999999999999877778888888888874 7899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      ++|++|++.+.+
T Consensus       179 ~l~~~l~~~i~~  190 (192)
T 2il1_A          179 EIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=6.6e-33  Score=205.91  Aligned_cols=166  Identities=40%  Similarity=0.715  Sum_probs=153.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +.++.+||+|+|++|||||||+++|.+..+.....++.+.+.....+...+....+.+|||||.+.+..++..++..+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            34678999999999999999999999999888888888888888888999988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +++|||++++.++..+..|+..+.......+|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887767799999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          168 QMINQI  173 (222)
Q Consensus       168 ~l~~~i  173 (222)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-34  Score=218.43  Aligned_cols=172  Identities=40%  Similarity=0.765  Sum_probs=158.5

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            34567899999999999999999999999988888888888888888888888888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998877677999999999999887888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027503          166 FLQMINQIHQTT  177 (222)
Q Consensus       166 ~~~l~~~i~~~~  177 (222)
                      |++|++.+.+..
T Consensus       177 ~~~l~~~i~~~~  188 (191)
T 3dz8_A          177 FERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.2e-33  Score=210.18  Aligned_cols=168  Identities=39%  Similarity=0.657  Sum_probs=152.4

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      .+....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            34456799999999999999999999999988888888888888888999998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766679999999999998777788888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027503          167 LQMINQIH  174 (222)
Q Consensus       167 ~~l~~~i~  174 (222)
                      ++|.+.+.
T Consensus       169 ~~l~~~~~  176 (179)
T 2y8e_A          169 RRVAAALP  176 (179)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHh
Confidence            99987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.3e-33  Score=207.53  Aligned_cols=166  Identities=45%  Similarity=0.798  Sum_probs=145.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|+|++++.++..+..|+..+......++|+++|+||+|+. .+....+....++...+++++++||++|.|+.++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988776679999999999994 46677888899999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027503          170 INQIHQT  176 (222)
Q Consensus       170 ~~~i~~~  176 (222)
                      .+.+.++
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=4.2e-33  Score=206.79  Aligned_cols=165  Identities=41%  Similarity=0.715  Sum_probs=151.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ..+.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45789999999999999999999999998888888888888888889998889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876667999999999999876777888899999999999999999999999999999


Q ss_pred             HHHHH
Q 027503          169 MINQI  173 (222)
Q Consensus       169 l~~~i  173 (222)
                      |++.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-33  Score=213.49  Aligned_cols=171  Identities=39%  Similarity=0.675  Sum_probs=152.9

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      .-.+.+++.+||+|+|++|||||||+++|.+..+.....++.+.+.....+..++....+.+|||||++.+..++..+++
T Consensus        15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (192)
T 2fg5_A           15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR   94 (192)
T ss_dssp             ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence            33566788999999999999999999999999987778888888888888888888889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999999999999988776679999999999998767788889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          164 DAFLQMINQIH  174 (222)
Q Consensus       164 ~~~~~l~~~i~  174 (222)
                      ++|++|.+.+.
T Consensus       175 ~l~~~l~~~i~  185 (192)
T 2fg5_A          175 ELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999988664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.8e-32  Score=207.06  Aligned_cols=172  Identities=31%  Similarity=0.482  Sum_probs=148.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+...+.++. .+.....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            467999999999999999999999998877776666 4555577788898889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+.+ .....+....++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887754 45699999999999974 666788899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhh
Q 027503          169 MINQIHQTTIQKSLC  183 (222)
Q Consensus       169 l~~~i~~~~~~~~~~  183 (222)
                      |++.+.+........
T Consensus       160 l~~~~~~~~~~~~~~  174 (189)
T 4dsu_A          160 LVREIRKHKEKMSKD  174 (189)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhcccc
Confidence            999998776555443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.3e-32  Score=207.15  Aligned_cols=168  Identities=33%  Similarity=0.534  Sum_probs=152.1

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ....+.+||+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456789999999999999999999999988888888877666 677888998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccc-cCCCHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAM-QNLNVED  164 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~  164 (222)
                      ++++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||+ +|.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999999999888664 34668999999999998888899999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027503          165 AFLQMINQIHQ  175 (222)
Q Consensus       165 ~~~~l~~~i~~  175 (222)
                      +|++|++.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=4.5e-33  Score=206.39  Aligned_cols=166  Identities=38%  Similarity=0.607  Sum_probs=151.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      .++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35789999999999999999999999998888888888888888899999889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998887765 45899999999999876777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027503          169 MINQIHQ  175 (222)
Q Consensus       169 l~~~i~~  175 (222)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-33  Score=205.18  Aligned_cols=163  Identities=44%  Similarity=0.754  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888888888888888899988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS---REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |+|++++.++..+..|+..+......++|+++|+||+|+.+.   +.+..++...++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988877667999999999999764   66778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          168 QMINQI  173 (222)
Q Consensus       168 ~l~~~i  173 (222)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=205.42  Aligned_cols=169  Identities=31%  Similarity=0.406  Sum_probs=138.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhhHhhhcCCcE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--FRAITSSYYRGALG   87 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   87 (222)
                      ++.+||+|+|++|||||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            46799999999999999999999998876554 4566677777888899889999999999887  56777889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 3468999999999998877888888889999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027503          167 LQMINQIHQTTIQ  179 (222)
Q Consensus       167 ~~l~~~i~~~~~~  179 (222)
                      ++|++.+.+.+..
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988765443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.3e-32  Score=206.23  Aligned_cols=170  Identities=32%  Similarity=0.476  Sum_probs=151.6

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      .+.+..++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            45567899999999999999999999999887777777766655 67788888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      ++++|||++++.++..+..|+..+.. ....++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            99999999999999999999988744 44566999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027503          166 FLQMINQIHQTT  177 (222)
Q Consensus       166 ~~~l~~~i~~~~  177 (222)
                      |++|.+.+.+..
T Consensus       163 ~~~l~~~~~~~~  174 (181)
T 2fn4_A          163 FEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=211.68  Aligned_cols=171  Identities=43%  Similarity=0.765  Sum_probs=152.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ...+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34567899999999999999999999999988888888888888888999998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+ ..+.+..+....++...+++++++||++|.|++++|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999988877667999999999999 446677888889999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027503          167 LQMINQIHQTTI  178 (222)
Q Consensus       167 ~~l~~~i~~~~~  178 (222)
                      ++|.+.+.+...
T Consensus       174 ~~l~~~~~~~~~  185 (213)
T 3cph_A          174 FTLAKLIQEKID  185 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998876543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1e-32  Score=207.38  Aligned_cols=168  Identities=33%  Similarity=0.434  Sum_probs=150.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....++|+|+|++|||||||+++|.++.+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999999888888878877666 67788899889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998886654 35699999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027503          168 QMINQIHQTT  177 (222)
Q Consensus       168 ~l~~~i~~~~  177 (222)
                      ++++.+.+..
T Consensus       162 ~l~~~~~~~~  171 (181)
T 3t5g_A          162 RIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-33  Score=212.72  Aligned_cols=166  Identities=29%  Similarity=0.419  Sum_probs=143.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            35679999999999999999999999888777777765443 35567788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ++|||++++.+++.+..|+..+.....  .++|+++|+||+|+.+ +.+..+++..++...+++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999998888887776543  3589999999999975 5667788888999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027503          167 LQMINQIHQT  176 (222)
Q Consensus       167 ~~l~~~i~~~  176 (222)
                      ++|++.+.++
T Consensus       163 ~~l~~~~~~~  172 (199)
T 2gf0_A          163 QELLTLETRR  172 (199)
T ss_dssp             HHHHHHCSSS
T ss_pred             HHHHHHHhhh
Confidence            9998876543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.2e-32  Score=203.70  Aligned_cols=167  Identities=34%  Similarity=0.656  Sum_probs=147.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +.+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            45688999999999999999999999999888888888888888889999988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCCCH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNLNV  162 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  162 (222)
                      +++|||++++.++..+..|+..+.....    .++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999998876653    568999999999997 46677888888888 56789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++|+++++.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=210.77  Aligned_cols=170  Identities=30%  Similarity=0.371  Sum_probs=146.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhhhcCCc
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-ITSSYYRGAL   86 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d   86 (222)
                      +.+..+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            456789999999999999999999976554434456666777777888899999999999999987764 7888899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      ++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998877653 46999999999999877788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027503          166 FLQMINQIHQTT  177 (222)
Q Consensus       166 ~~~l~~~i~~~~  177 (222)
                      |+++++.+.+.+
T Consensus       179 f~~l~~~i~~~~  190 (195)
T 3cbq_A          179 FEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999886543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.3e-32  Score=204.45  Aligned_cols=165  Identities=30%  Similarity=0.366  Sum_probs=135.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhhhcCCcEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-ITSSYYRGALGALL   90 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~   90 (222)
                      .+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777766667777788888888999999999999999998775 77788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654 469999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027503          170 INQIHQT  176 (222)
Q Consensus       170 ~~~i~~~  176 (222)
                      ++.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.8e-33  Score=209.69  Aligned_cols=168  Identities=33%  Similarity=0.472  Sum_probs=148.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999888766678888888888888876 67899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +|+|||++++.+++.+..|+..+.....   ...|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999988876532   3244889999999987677888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027503          165 AFLQMINQIHQT  176 (222)
Q Consensus       165 ~~~~l~~~i~~~  176 (222)
                      +|++|++.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999887644

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.9e-32  Score=207.65  Aligned_cols=168  Identities=36%  Similarity=0.625  Sum_probs=148.7

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhhhcCC
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-AITSSYYRGA   85 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~   85 (222)
                      ......+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+. .++..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            344578999999999999999999999999888888888888888889999988999999999999988 8899999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC---CC
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN---LN  161 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~g  161 (222)
                      |++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|   .|
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            99999999999999999999999987775 566999999999999877778888999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIH  174 (222)
Q Consensus       162 i~~~~~~l~~~i~  174 (222)
                      +.++|++|++.+.
T Consensus       175 i~~l~~~l~~~i~  187 (189)
T 1z06_A          175 VEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=5.4e-33  Score=215.03  Aligned_cols=174  Identities=37%  Similarity=0.680  Sum_probs=151.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe----------EEEEEEEeCCChhhhh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----------LIKAQIWDTAGQERFR   75 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~   75 (222)
                      ..++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++.          .+.+.||||||++.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            456788999999999999999999999998887666777777777777777665          6889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                      .++..++..+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.+.+.+..+++..++...+++++++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            9999999999999999999999999999989887755443 569999999999998777788889999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHhhhh
Q 027503          155 SAMQNLNVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~~~~~~  179 (222)
                      ||++|.|++++|++|++.+.+....
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998875443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.9e-33  Score=211.85  Aligned_cols=168  Identities=39%  Similarity=0.658  Sum_probs=140.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            44678999999999999999999999999877778888888888888999998999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT------HSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      +|+|||++++.++..+..|+..+......++|++||+||+|+.      ..+.+..+++..++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999888766679999999999996      3466778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIHQ  175 (222)
Q Consensus       162 i~~~~~~l~~~i~~  175 (222)
                      ++++|++|++.+.+
T Consensus       184 v~el~~~l~~~i~~  197 (199)
T 2p5s_A          184 IVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=8.1e-32  Score=203.69  Aligned_cols=165  Identities=19%  Similarity=0.297  Sum_probs=143.5

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      .......+||+|+|++|||||||+++|.+..+...+.++.  ..+...+.+++..+.+.+|||+|++.+.     ++..+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            4456789999999999999999999999999887776663  3344788899999999999999998766     78889


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEccccCCC
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLT--HSREVNEEEGKILAETEG-LYFMETSAMQNLN  161 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  161 (222)
                      |++++|||++++.+++.+..|+..+..... .++|++||+||+|+.  ..+.+..+++..++...+ ++|+++||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999877653 468999999999994  456788899999999987 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027503          162 VEDAFLQMINQIHQTT  177 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~  177 (222)
                      ++++|+++++.+.+.+
T Consensus       167 v~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          167 VERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988664

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.3e-31  Score=204.52  Aligned_cols=165  Identities=35%  Similarity=0.611  Sum_probs=147.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE----------------------------
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL----------------------------   60 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   60 (222)
                      .++.+||+|+|++|||||||+++|++..+...+.++.+.+.....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4578999999999999999999999999888888888888887777777655                            


Q ss_pred             ---------EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           61 ---------IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        61 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                               ..+.+|||||++.+..++..+++.+|++|+|||++++.++..+..|+..+.....  .|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence                     7899999999999999999999999999999999999999999999988877654  89999999999 55


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      .+.+..+++..++...+++++++||++|.|+.++|++|.+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            567788899999999999999999999999999999999988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=6.1e-32  Score=205.64  Aligned_cols=168  Identities=28%  Similarity=0.517  Sum_probs=147.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....+||+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            4567899999999999999999999999987777788766655 467788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEccccCCCHH
Q 027503           88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS--REVNEEEGKILAETEGLY-FMETSAMQNLNVE  163 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  163 (222)
                      +|+|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+.  +.+..+++..++...++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 678888876643 4999999999999753  667889999999999988 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027503          164 DAFLQMINQIHQTT  177 (222)
Q Consensus       164 ~~~~~l~~~i~~~~  177 (222)
                      ++|+++++.+.+..
T Consensus       177 ~l~~~l~~~i~~~~  190 (194)
T 3reg_A          177 EVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-32  Score=206.87  Aligned_cols=165  Identities=24%  Similarity=0.398  Sum_probs=142.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            35789999999999999999999999998877778876655 456778888899999999999988775 6799999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc-ccCCCHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA-MQNLNVED  164 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~  164 (222)
                      |+|||++++.+++.+..|+..+....   ..++|++||+||+|+.+.+.+..+++..++...+++++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            99999999999999999999887664   246999999999999877788889999999999999999999 89999999


Q ss_pred             HHHHHHHHHHH
Q 027503          165 AFLQMINQIHQ  175 (222)
Q Consensus       165 ~~~~l~~~i~~  175 (222)
                      +|++|++.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=7.3e-33  Score=212.38  Aligned_cols=172  Identities=28%  Similarity=0.448  Sum_probs=116.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRVGDK--LIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ...++|+|+|++|||||||+++|.+.  .+...+.++.+.+.....+.+++.  .+.+.+|||||++.+..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  777677788877777788888876  78999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEcccc-CC
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTH-SREVNEEEGKILAETEGLYFMETSAMQ-NL  160 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  160 (222)
                      |++|+|||++++.+++.+..|+..+.....   .++|++||+||+|+.+ .+.+..+++..++...+++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   5799999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHhhhhhh
Q 027503          161 NVEDAFLQMINQIHQTTIQKS  181 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~~~~~  181 (222)
                      |++++|++|++.+.+....+.
T Consensus       178 gi~~l~~~i~~~~~~~~~~~~  198 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDKV  198 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999887665443

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-32  Score=204.48  Aligned_cols=169  Identities=46%  Similarity=0.742  Sum_probs=152.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            44578999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+ +.+..+++..++...+++++++||++|.|++++|
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  169 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            999999999999999999988887654 35689999999999953 5677888899999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027503          167 LQMINQIHQTT  177 (222)
Q Consensus       167 ~~l~~~i~~~~  177 (222)
                      ++|++.+.+..
T Consensus       170 ~~l~~~~~~~~  180 (195)
T 1x3s_A          170 EELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHHhhh
Confidence            99999987543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.3e-32  Score=199.58  Aligned_cols=164  Identities=34%  Similarity=0.538  Sum_probs=143.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999988777767665544 4566788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 469999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=9.8e-32  Score=202.52  Aligned_cols=170  Identities=34%  Similarity=0.520  Sum_probs=148.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....+||+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+..++..++..+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999888777767665444 4567788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +++|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999988877654 469999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027503          167 LQMINQIHQTTI  178 (222)
Q Consensus       167 ~~l~~~i~~~~~  178 (222)
                      ++|++.+.+++.
T Consensus       173 ~~l~~~i~~~~~  184 (187)
T 2a9k_A          173 FDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=210.30  Aligned_cols=170  Identities=32%  Similarity=0.487  Sum_probs=144.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            35689999999999999999999999998888777776665 56666677778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998887653 34689999999999988788889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 027503          168 QMINQIHQTTIQ  179 (222)
Q Consensus       168 ~l~~~i~~~~~~  179 (222)
                      +|++.+.+....
T Consensus       180 ~l~~~i~~~~~~  191 (201)
T 3oes_A          180 KVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHhhhhh
Confidence            999998765433

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-32  Score=212.00  Aligned_cols=170  Identities=33%  Similarity=0.564  Sum_probs=143.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999988777777776554 456677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--------CCHHHHHHHHHHcCC-eEEEEccccC
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE--------VNEEEGKILAETEGL-YFMETSAMQN  159 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  159 (222)
                      +|||++++.+++.+. .|+..+..... ++|++||+||+|+.+.+.        +..+++..++...++ +|+++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 79988877654 599999999999876443        367888889998886 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhhhh
Q 027503          160 LNVEDAFLQMINQIHQTTIQKS  181 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~~~~~~  181 (222)
                      .|++++|++|++.+.+....+.
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-----
T ss_pred             CCHHHHHHHHHHHHhhhhhhcc
Confidence            9999999999999987655444

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=7.8e-32  Score=199.59  Aligned_cols=163  Identities=30%  Similarity=0.397  Sum_probs=123.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|.+..+... .++.+.+. ...+.+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999987765433 34444444 45678889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887653 45699999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 027503          171 NQIHQT  176 (222)
Q Consensus       171 ~~i~~~  176 (222)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.9e-31  Score=199.94  Aligned_cols=165  Identities=19%  Similarity=0.319  Sum_probs=140.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+|||||++.     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999998876 66776544 457778888889999999999875     46788999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLT--HSREVNEEEGKILAETE-GLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  163 (222)
                      +|||++++.+++.+..|+..+.....   .++|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            99999999999999998777665533   568999999999994  45677888888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhh
Q 027503          164 DAFLQMINQIHQTTIQKS  181 (222)
Q Consensus       164 ~~~~~l~~~i~~~~~~~~  181 (222)
                      ++|+++++.+.+.+....
T Consensus       158 ~lf~~l~~~~~~~~~~~~  175 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQQ  175 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999987765543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.6e-32  Score=210.41  Aligned_cols=169  Identities=24%  Similarity=0.444  Sum_probs=145.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            445789999999999999999999999998888888887665 4566777888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027503           88 ALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFME  153 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  153 (222)
                      +|+|||++++.++.. +..|+..+..... ++|++||+||+|+.+.            +.+..+++..++...++ +|++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 6889999887753 5999999999999753            67888999999999999 9999


Q ss_pred             EccccCCC-HHHHHHHHHHHHHHhhh
Q 027503          154 TSAMQNLN-VEDAFLQMINQIHQTTI  178 (222)
Q Consensus       154 ~Sa~~~~g-i~~~~~~l~~~i~~~~~  178 (222)
                      +||++|.| ++++|+++++.+.+...
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCc
Confidence            99999998 99999999998876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=7.4e-32  Score=199.64  Aligned_cols=163  Identities=33%  Similarity=0.518  Sum_probs=144.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+..++..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988777777776554 3566778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++... +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999998887654 456999999999999877778888889998887 799999999999999999999


Q ss_pred             HHHHHH
Q 027503          169 MINQIH  174 (222)
Q Consensus       169 l~~~i~  174 (222)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998763

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=5.1e-32  Score=203.25  Aligned_cols=170  Identities=35%  Similarity=0.630  Sum_probs=135.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      +....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.++ +....+.+||+||++.+..++..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999999888888888888888887776 55678999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTH-SREVNEEEGKILAE-TEGLYFMETSAMQNL  160 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  160 (222)
                      ++|+|||++++.+++.+..|+..+.....    .++|+++|+||+|+.+ .+.+..+++..++. ..+++++++||++|.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988876653    5689999999999954 34567788888887 567899999999999


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 027503          161 NVEDAFLQMINQIHQTT  177 (222)
Q Consensus       161 gi~~~~~~l~~~i~~~~  177 (222)
                      |++++|++|.+.+.+.+
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-31  Score=203.20  Aligned_cols=169  Identities=29%  Similarity=0.489  Sum_probs=147.5

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR   83 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   83 (222)
                      |...+..+.++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            4444556889999999999999999999999988777777776554 456777888889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-
Q 027503           84 GALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-  149 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-  149 (222)
                      .+|++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.            +.+..+++..++...++ 
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            999999999999999999987 79888887654 5899999999999763            46778889999999997 


Q ss_pred             eEEEEccccCCCHHHHHHHHHHHHH
Q 027503          150 YFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       150 ~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +++++||++|.|++++|++|++.+.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8999999999999999999998875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=9.8e-32  Score=198.69  Aligned_cols=164  Identities=34%  Similarity=0.518  Sum_probs=145.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..++|+|+|++|||||||+++|.++.+...+.++.+. .....+.+++....+.+|||||++.+..++..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4689999999999999999999998887777676653 346677888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988887664 3569999999999998777788888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-31  Score=206.59  Aligned_cols=169  Identities=29%  Similarity=0.361  Sum_probs=140.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGA   85 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~   85 (222)
                      ..++.+||+|+|++|||||||+++|.+.... ....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            4567899999999999999999999864431 22234566677777888899989999999999876 556777888999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++...+++|+++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988776543 34699999999999987677888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027503          165 AFLQMINQIHQT  176 (222)
Q Consensus       165 ~~~~l~~~i~~~  176 (222)
                      +|++|++.+...
T Consensus       193 lf~~l~~~i~~~  204 (211)
T 2g3y_A          193 LFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=203.91  Aligned_cols=170  Identities=30%  Similarity=0.464  Sum_probs=139.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ......++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3456789999999999999999999999888777777775444 466778888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEE
Q 027503           87 GALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFM  152 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~  152 (222)
                      ++|+|||++++.++..+. .|+..+..... ++|++||+||+|+.+            .+.+..+++..++...++ +|+
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999986 69888877654 599999999999975            256778888999998887 899


Q ss_pred             EEccccCCCHHHHHHHHHHHHHHhhh
Q 027503          153 ETSAMQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      ++||++|.|++++|++|++.+.+...
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHHhcccc
Confidence            99999999999999999999876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-31  Score=203.17  Aligned_cols=166  Identities=33%  Similarity=0.500  Sum_probs=147.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ..++..++..+|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4679999999999999999999999998877777776554 45677888889999999999888 778889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC-CHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFL  167 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~  167 (222)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            9999999999999999998887764 3569999999999998777788899999999999999999999999 9999999


Q ss_pred             HHHHHHHHhh
Q 027503          168 QMINQIHQTT  177 (222)
Q Consensus       168 ~l~~~i~~~~  177 (222)
                      +|++.+.+.+
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.4e-31  Score=202.01  Aligned_cols=166  Identities=30%  Similarity=0.517  Sum_probs=143.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..++.+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            356789999999999999999999999988877778776555 3566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEE
Q 027503           88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFME  153 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  153 (222)
                      +|+|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+.            +.++.+++..++...+ ++|++
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  160 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  160 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999998 679888877653 5899999999999742            5677888999998887 79999


Q ss_pred             Eccc-cCCCHHHHHHHHHHHHHH
Q 027503          154 TSAM-QNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~-~~~gi~~~~~~l~~~i~~  175 (222)
                      +||+ ++.|++++|+.+++.+.+
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9998 689999999999988763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.1e-30  Score=197.94  Aligned_cols=170  Identities=31%  Similarity=0.484  Sum_probs=136.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +....++|+|+|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            34578999999999999999999999988777666666443 34667788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +++|||++++.++..+..|+..+..... .++|+++|+||+|+.+ +....++...++...+++++++||++|.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877653 4689999999999976 5667888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 027503          167 LQMINQIHQTTIQ  179 (222)
Q Consensus       167 ~~l~~~i~~~~~~  179 (222)
                      ++|++.+.+.+.+
T Consensus       175 ~~l~~~~~~~~~~  187 (190)
T 3con_A          175 YTLVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998765543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=3.1e-31  Score=199.72  Aligned_cols=165  Identities=30%  Similarity=0.519  Sum_probs=144.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999888777777765444 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888877654 5899999999998653            45677888899999997 999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHh
Q 027503          156 AMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~~~  176 (222)
                      |++|.|++++|+++++.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999887643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=205.70  Aligned_cols=166  Identities=31%  Similarity=0.520  Sum_probs=124.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++..+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            467999999999999999999999988877776766443 3566788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..            .+..+++..++...++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6888887765 348999999999997642            5677888899999997 999999


Q ss_pred             cccCCCHHHHHHHHHHHHHHhh
Q 027503          156 AMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      |++|.|++++|++|++.+.+.+
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=9.1e-32  Score=208.25  Aligned_cols=172  Identities=27%  Similarity=0.456  Sum_probs=146.3

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      ....+..+||+|+|.+|||||||+++|.+..+...+.++.+.......+... +..+.+.+|||||++.+..++..++..
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG   84 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence            3456788999999999999999999999988877777777777666665554 444789999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+....++...+++++++||++|.|+++
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  164 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL  164 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence            99999999999999999999999999888777799999999999988778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027503          165 AFLQMINQIHQTT  177 (222)
Q Consensus       165 ~~~~l~~~i~~~~  177 (222)
                      +|++|.+.+.+..
T Consensus       165 l~~~l~~~~~~~~  177 (218)
T 4djt_A          165 PFLHLARIFTGRP  177 (218)
T ss_dssp             HHHHHHHHHHCCT
T ss_pred             HHHHHHHHHhccc
Confidence            9999999887553

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=3.8e-34  Score=218.84  Aligned_cols=170  Identities=51%  Similarity=0.819  Sum_probs=144.0

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            34567899999999999999999999999888777778888888888999999989999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      |++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998776667999999999999877777777788899999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          166 FLQMINQIHQ  175 (222)
Q Consensus       166 ~~~l~~~i~~  175 (222)
                      |++|++.+.+
T Consensus       187 ~~~l~~~l~~  196 (199)
T 3l0i_B          187 FMTMAAEIKK  196 (199)
T ss_dssp             HHHHTTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.98  E-value=1.2e-30  Score=199.72  Aligned_cols=166  Identities=32%  Similarity=0.507  Sum_probs=145.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            3467899999999999999999999999988877788776665 447788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027503           88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFME  153 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  153 (222)
                      +|+|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+.            +.+..+++..++...+. ++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999998 578888877643 5899999999999764            45777888899999887 8999


Q ss_pred             EccccCCCHHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      +||++|.|++++|++|++.+.+
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.98  E-value=2.9e-31  Score=204.06  Aligned_cols=166  Identities=30%  Similarity=0.517  Sum_probs=143.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ..++.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            456789999999999999999999999998877778776655 4566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEE
Q 027503           88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFME  153 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  153 (222)
                      +|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..+++..++...+ ++|++
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  181 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  181 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999998 679888877653 5899999999999642            4577888899998887 69999


Q ss_pred             Eccc-cCCCHHHHHHHHHHHHHH
Q 027503          154 TSAM-QNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~-~~~gi~~~~~~l~~~i~~  175 (222)
                      +||+ ++.|++++|+.+++.+++
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHhh
Confidence            9999 689999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=2.8e-30  Score=190.51  Aligned_cols=163  Identities=33%  Similarity=0.520  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..++|+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            35899999999999999999999988877666666443 35667788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+.+ +....+....++...+++++++||++|.|++++|+++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988877653 4699999999999976 5667888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=4.8e-32  Score=205.99  Aligned_cols=175  Identities=20%  Similarity=0.220  Sum_probs=138.8

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------CCCcceeeEEEEE-EECCeEEEEEEEeC
Q 027503            1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-----------KPTIGVEFAYRNI-RVGDKLIKAQIWDT   68 (222)
Q Consensus         1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt   68 (222)
                      |..+.....++.+||+|+|++|||||||++.+.+. +...+           .++.+.++....+ ..++..+.+.+|||
T Consensus         3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt   81 (198)
T 3t1o_A            3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV   81 (198)
T ss_dssp             -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred             ccccchhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence            33445567789999999999999999999766653 33332           2344444443334 55677889999999


Q ss_pred             CChhhhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH
Q 027503           69 AGQERFRAITSSYYRGALGALLVYDIT------RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI  142 (222)
Q Consensus        69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  142 (222)
                      ||++.+..++..+++.+|++|+|||++      +..++..+..|+..+. ....++|+++|+||+|+.+.  +..+++..
T Consensus        82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~  158 (198)
T 3t1o_A           82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRA  158 (198)
T ss_dssp             CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHH
Confidence            999999999999999999999999999      4567777777777663 23356999999999999653  67888999


Q ss_pred             HHHHcCC-eEEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503          143 LAETEGL-YFMETSAMQNLNVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       143 ~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  179 (222)
                      ++...++ +++++||++|.|++++|++|++.+.+...+
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            9999998 999999999999999999999999876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=6.7e-31  Score=195.24  Aligned_cols=163  Identities=34%  Similarity=0.467  Sum_probs=142.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..++|+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999888766667765444 3456678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |||++++.+++.+..|+..+.....  .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999889888876542  45899999999999877778888888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          169 MINQIH  174 (222)
Q Consensus       169 l~~~i~  174 (222)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987553

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=1.3e-31  Score=208.02  Aligned_cols=173  Identities=31%  Similarity=0.551  Sum_probs=152.0

Q ss_pred             CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503            2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY   81 (222)
Q Consensus         2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   81 (222)
                      ..+......+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+
T Consensus         5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   84 (221)
T 3gj0_A            5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY   84 (221)
T ss_dssp             -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred             ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence            44556677889999999999999999999988777777777888889988889999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      ++.+|++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+... . .....++...+++++++||++|.|
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYN  161 (221)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred             HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999999999999887754 489999999999976433 2 255677888899999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027503          162 VEDAFLQMINQIHQTT  177 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~  177 (222)
                      +.++|++|.+.+....
T Consensus       162 i~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDP  177 (221)
T ss_dssp             TTHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999887553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=5.5e-30  Score=195.78  Aligned_cols=169  Identities=61%  Similarity=0.978  Sum_probs=151.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++..++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            46789999999999999999999999998888888888888888899999989999999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+.+....++++.++...++.++++|++++.|+.++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999888988887665556899999999999876777788899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027503          169 MINQIHQTT  177 (222)
Q Consensus       169 l~~~i~~~~  177 (222)
                      +.+.+.+..
T Consensus       162 l~~~~~~~~  170 (199)
T 2f9l_A          162 ILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.6e-30  Score=196.77  Aligned_cols=167  Identities=30%  Similarity=0.391  Sum_probs=138.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCCc
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGAL   86 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d   86 (222)
                      ++.+||+|+|++|||||||+++|.+..  +... .++.+.+.....+.+++..+.+.+|||+|.+. +..++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            467999999999999999999999643  2322 34466677777788899989999999999876 4567788889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      ++++|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++|+++||++|.|+.++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988887653 356899999999999766777788888888889999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027503          166 FLQMINQIHQTT  177 (222)
Q Consensus       166 ~~~l~~~i~~~~  177 (222)
                      |+++++.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.7e-30  Score=199.77  Aligned_cols=165  Identities=30%  Similarity=0.506  Sum_probs=138.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +..+||+|+|.+|||||||+++|.+..+...+.++.+.... ..+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            56889999999999999999999999988777777766554 34778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 678888877543 4899999999999754            45677888889988887 899999


Q ss_pred             cccCCCHHHHHHHHHHHHHHh
Q 027503          156 AMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~~~  176 (222)
                      |++|.|++++|++|++.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988743

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=3.3e-31  Score=199.08  Aligned_cols=163  Identities=33%  Similarity=0.572  Sum_probs=126.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45799999999999999999999998887776666654432 23445666778899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEccc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE----------VNEEEGKILAETEGL-YFMETSAM  157 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  157 (222)
                      +|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.+.          +..+++..++...++ +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 69888877654 589999999999876443          467788899998886 99999999


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 027503          158 QNLNVEDAFLQMINQIH  174 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~  174 (222)
                      +|.|++++|+++++.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=5.8e-30  Score=195.00  Aligned_cols=167  Identities=15%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      ..+....++|+|+|++|||||||+++|.+..+.. .+.++.+...  ..+...+  +.+.+|||||++.+..++..+++.
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhc
Confidence            4556789999999999999999999999999877 6677776443  3344433  689999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--------CCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeE
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCS--------SCMAIVLVGNKSDLTHSREVNEEEGKIL-----AETEGLYF  151 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~  151 (222)
                      +|++|+|||++++.+|..+..|+..+.....        .++|++||+||+|+.+.... .+....+     +...++++
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-AELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-HHHHHHHTHHHHHTTSCEEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-HHHHHHhcchhhccCCeeEE
Confidence            9999999999999999999888887754421        25899999999999764321 1222221     14467889


Q ss_pred             EEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          152 METSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +++||++|.|++++|++|++.+.+..
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=3.9e-30  Score=197.47  Aligned_cols=162  Identities=30%  Similarity=0.517  Sum_probs=138.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|.+|||||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            5679999999999999999999999888777767664 445566778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..            .+..+++..++...++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999987 7888887775 459999999999997643            2677888899999886 599999


Q ss_pred             cccCCCHHHHHHHHHHHH
Q 027503          156 AMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i  173 (222)
                      |++|.|++++|+++++.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.2e-28  Score=187.30  Aligned_cols=168  Identities=63%  Similarity=1.012  Sum_probs=151.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..++++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+..++..++..+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            44567889999999999999999999999998888889999988888999999888899999999999888899999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      +++++|+|+++..+++.+..|+..+........|+++++||+|+.+......++++.++...++.++++|++++.|+.++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA  182 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999888988877665556899999999999876777788899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027503          166 FLQMINQI  173 (222)
Q Consensus       166 ~~~l~~~i  173 (222)
                      |+.|.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.1e-29  Score=188.83  Aligned_cols=161  Identities=21%  Similarity=0.324  Sum_probs=127.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....++|+|+|++|||||||+++|.+..+. .+.++.+.  ....+.+++  ..+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   78 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAV   78 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEE
Confidence            345799999999999999999999998875 34555543  344555554  6889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCCeEEEEccccCCCHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      ++|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.... .+....+    +...+++++++||++|.|++
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH-HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            99999999999999888887765432 246899999999999764321 1222222    22345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      ++|+++++.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=6.4e-30  Score=188.90  Aligned_cols=156  Identities=22%  Similarity=0.384  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.+..+.. +.|+.+..  ...+...+  ..+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888754 45666533  33444443  68899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHH-HH----HHcCCeEEEEccccCCCHHHHH
Q 027503           93 DITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKI-LA----ETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      |++++.++..+..|+..+... ...+.|+++|+||+|+.+..  ..++... +.    ...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999988888776553 23458999999999996532  2222221 11    1234679999999999999999


Q ss_pred             HHHHHHHHH
Q 027503          167 LQMINQIHQ  175 (222)
Q Consensus       167 ~~l~~~i~~  175 (222)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=9.1e-29  Score=187.43  Aligned_cols=163  Identities=19%  Similarity=0.316  Sum_probs=128.8

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE-FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ......++|+|+|.+|||||||+++|.+.. +...+.++.+  .....+.+++  ..+.+|||||++.+..++..++..+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            344578999999999999999999999887 4555556554  4445556655  6889999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccc
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAM  157 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  157 (222)
                      |++|+|||++++.++..+..|+..+.....   .++|+++|+||+|+.+.  ...++...+..     ..+++++++||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999999999888888766543   46999999999999653  34455555443     235789999999


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 027503          158 QNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~~  175 (222)
                      +|.|++++|++|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=5e-29  Score=190.48  Aligned_cols=156  Identities=19%  Similarity=0.258  Sum_probs=122.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+.+  ...+.+++  +.+.+|||||++.+..++..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34679999999999999999999988764 344555544  34566766  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----------------EGLYF  151 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  151 (222)
                      +|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+  .+..++...+...                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999988876542 35699999999999965  4566666666542                 34679


Q ss_pred             EEEccccCCCHHHHHHHHHHH
Q 027503          152 METSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=2.5e-29  Score=190.34  Aligned_cols=160  Identities=23%  Similarity=0.387  Sum_probs=128.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+.++.  .+...+  +.+.+|||||++.+..++..++..+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            46899999999999999999999999887777777766654  344443  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH-H----HHcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKIL-A----ETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+.+..  ..+..... .    ...+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999988887775532 3569999999999997532  22222221 1    1234679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      ++|++|++.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=3.3e-28  Score=183.52  Aligned_cols=160  Identities=19%  Similarity=0.325  Sum_probs=128.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+|+|++|||||||+++|.+.. ...+.++.+..  ...+..++  ..+.+|||||++.+..++..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999888 55666766543  44555554  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+...  .++......     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888777554 235699999999999976432  233322221     345689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|+++.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=1.6e-28  Score=186.35  Aligned_cols=156  Identities=21%  Similarity=0.284  Sum_probs=126.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            35679999999999999999999998875 344555543  45667776  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET------------EGLYFMETSA  156 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  156 (222)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+  .++.++...+...            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988876542 35699999999999975  4455665555432            3468999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQ  172 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~  172 (222)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=2e-29  Score=190.30  Aligned_cols=164  Identities=21%  Similarity=0.370  Sum_probs=122.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRV---GDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+..   ++..+.+.+|||+|++.+..++..++.++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999984  455556677777766555443   335678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEcccc
Q 027503           87 GALLVYDITRR-ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN---EEEGKILAETEGLY----FMETSAMQ  158 (222)
Q Consensus        87 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  158 (222)
                      ++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+.+.+.   .+....++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 478899999988876543 48999999999997643322   23345566666776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHh
Q 027503          159 NL-NVEDAFLQMINQIHQT  176 (222)
Q Consensus       159 ~~-gi~~~~~~l~~~i~~~  176 (222)
                      |. ++.++++.+.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 9999999888877643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.2e-28  Score=185.45  Aligned_cols=160  Identities=20%  Similarity=0.326  Sum_probs=124.2

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      .......+||+|+|.+|||||||+++|.+..+ ....++.+...  ..+.+++  ..+.+|||||++.+..++..++..+
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence            44556789999999999999999999999887 34445555443  3455555  6899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccC
Q 027503           86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQN  159 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~  159 (222)
                      |++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.  ...++.....     ...+++++++||++|
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999999988887776542 355999999999999653  2333333332     224568999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027503          160 LNVEDAFLQMINQ  172 (222)
Q Consensus       160 ~gi~~~~~~l~~~  172 (222)
                      .|++++|++|++.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.4e-29  Score=191.33  Aligned_cols=158  Identities=22%  Similarity=0.376  Sum_probs=119.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+.. +.|+.+  .....+...+  +.+.+|||||++.+..++..++..+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            467999999999999999999999877653 345444  3344455554  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHH-HHH----HHcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGK-ILA----ETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+.+..  ..++.. .+.    ...+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988887765432 3458999999999996532  222222 111    1234679999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          164 DAFLQMINQIH  174 (222)
Q Consensus       164 ~~~~~l~~~i~  174 (222)
                      ++|++|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.2e-28  Score=184.88  Aligned_cols=160  Identities=20%  Similarity=0.328  Sum_probs=124.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+|+|++|||||||+++|.++.+. .+.++.+..  ...+.+++  ..+.+|||||++.+..++..++..+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988775 445555533  34455555  68999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988876542 245999999999999753  23344433322     245689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|++|++.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.1e-27  Score=196.10  Aligned_cols=164  Identities=29%  Similarity=0.490  Sum_probs=143.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            346899999999999999999999988877777776444 4566788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.            +.+..+++..++...++ +++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 68888877654 5999999999998653            56778889999999997 999999


Q ss_pred             cccCCCHHHHHHHHHHHHHH
Q 027503          156 AMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~~  175 (222)
                      |++|.|++++|++|++.+..
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988763

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=4.7e-29  Score=188.77  Aligned_cols=160  Identities=21%  Similarity=0.322  Sum_probs=126.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|++|||||||+++|.+..+.. +.++.+..  ...+..++  ..+.+|||||++.+..++..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            468999999999999999999998877653 44555533  34455554  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGK-IL----AETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+...  .++.. .+    +...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999888887765542 34699999999999975422  22222 11    12245689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|+++.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=7.9e-29  Score=186.65  Aligned_cols=159  Identities=25%  Similarity=0.374  Sum_probs=123.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+++|++|||||||+++|.+..+. .+.++.+.  ....+..++  +.+.+|||||++.+..++..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987643 33455543  334555654  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  163 (222)
                      +|||++++.++..+..|+..+... ...++|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999988888766443 235689999999999975432  22222221     1234679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          164 DAFLQMINQIHQ  175 (222)
Q Consensus       164 ~~~~~l~~~i~~  175 (222)
                      ++|+++++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.3e-29  Score=187.24  Aligned_cols=160  Identities=21%  Similarity=0.351  Sum_probs=124.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...++|+|+|++|||||||+++|.++.+ ..+.++.+..  ...+.+++  ..+.+|||||++.+..++..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998776 4445666543  34455555  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVE  163 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  163 (222)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.......     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888776543 356899999999999653  233333333221     34579999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=7.6e-29  Score=188.99  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=121.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEE--EEEE-CCeEEEEEEEeCCChhhhhhhh---H
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR--NIRV-GDKLIKAQIWDTAGQERFRAIT---S   79 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~   79 (222)
                      ..+.++.+||+|+|++|||||||++++.+... ..  ++.+.+....  ...+ ++..+.+.+|||||++.+..+.   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            45567899999999999999999998877432 22  3433333322  2233 2555789999999999987766   8


Q ss_pred             hhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC-------CCCCCHHHHHHHHH----H
Q 027503           80 SYYRGALGALLVYDITRR--ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-------SREVNEEEGKILAE----T  146 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~  146 (222)
                      .+++++|++|+|||+++.  +++..+..|+..+.... .++|++||+||+|+.+       .+.+..+....++.    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            999999999999999997  66677777777664433 3599999999999865       23445555677777    6


Q ss_pred             cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          147 EGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       147 ~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      .+++|+++||++ .|+.++|+.+++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            788999999999 99999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.2e-30  Score=199.95  Aligned_cols=162  Identities=30%  Similarity=0.537  Sum_probs=136.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998887766666664333 455666777788899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503           90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS  155 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  155 (222)
                      +|||++++.++..+. .|+..+..... ++|+++|+||+|+.+..            .+..+++..++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 78877766543 58999999999997543            4555667778888887 899999


Q ss_pred             cccCCCHHHHHHHHHHHH
Q 027503          156 AMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i  173 (222)
                      |++|.|++++|++|++.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=6.3e-27  Score=182.49  Aligned_cols=169  Identities=17%  Similarity=0.149  Sum_probs=122.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh------hhh---hhhhHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ------ERF---RAITSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~   80 (222)
                      +..++|+|+|.+|||||||+++|.+..+.....+..+.+.....+...+  ..+.+|||||.      +..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4679999999999999999999999877544344444555555555555  57899999998      331   112344


Q ss_pred             hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 027503           81 YYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE---EGKILAETEG--LYFME  153 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~  153 (222)
                      ++..+|++|+|||++++.++..  ...|+..+.... .++|+++|+||+|+.+.+.+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5788999999999999877642  234555444332 25899999999999876666554   4566677776  89999


Q ss_pred             EccccCCCHHHHHHHHHHHHHHhhhhhh
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQTTIQKS  181 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~~  181 (222)
                      +||++|.|+.++|++|++.+.+.+....
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~  211 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAESI  211 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987765433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.5e-27  Score=175.82  Aligned_cols=153  Identities=19%  Similarity=0.226  Sum_probs=117.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc--
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR--   83 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   83 (222)
                      .++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||++.+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998776655566666666666667766  578999999988664      34456664  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++++|+|+++.+.   ...|+..+...   ++|+++|+||+|+.+.+.+.. +...++...+++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999988543   34466666542   489999999999865433332 3567788888999999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          164 DAFLQMINQI  173 (222)
Q Consensus       164 ~~~~~l~~~i  173 (222)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=4.3e-27  Score=175.90  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=123.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            456789999999999999999999999888777777777776667777774  578999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccccC
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-------G--LYFMETSAMQN  159 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  159 (222)
                      |+|+|++++.....    +..+......++|+++|+||+|+.+.   ..+.........       +  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999988432222    12222233345899999999999753   222322222221       2  58999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhh
Q 027503          160 LNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~~~  178 (222)
                      .|++++|++|++.+...+.
T Consensus       156 ~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHhhhhhcc
Confidence            9999999999988775443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=193.41  Aligned_cols=168  Identities=27%  Similarity=0.337  Sum_probs=124.6

Q ss_pred             CCCCCCeeeEEEEEcCC---------CCChHHHHHHHhh---CcCCCCCCCCc-ceeeEEEE--------------EEEC
Q 027503            5 YDEECDYLFKAVMIGDS---------AVGKSNLLSRFAR---DEFRLDSKPTI-GVEFAYRN--------------IRVG   57 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~   57 (222)
                      .....++.+||+|+|.+         |||||||+++|.+   ..+...+.++. +.++....              ...+
T Consensus        12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~   91 (255)
T 3c5h_A           12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED   91 (255)
T ss_dssp             TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred             CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence            34556788999999999         9999999999998   55555555554 33322111              1245


Q ss_pred             CeEEEEEEEe-----------------------CCChhhhhhhhHhhhc---------------------CCcEEEEEEe
Q 027503           58 DKLIKAQIWD-----------------------TAGQERFRAITSSYYR---------------------GALGALLVYD   93 (222)
Q Consensus        58 ~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d   93 (222)
                      +..+.+.+||                       ++|++.+..++..++.                     ++|++|+|||
T Consensus        92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D  171 (255)
T 3c5h_A           92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID  171 (255)
T ss_dssp             ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred             CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence            6678899999                       5566666667777776                     7999999999


Q ss_pred             CCCh--hhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCHHHHHHHH
Q 027503           94 ITRR--ATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        94 ~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      ++++  .+++.+..|+..+... ...++|++||+||+|+.+.+.+  ++...++.. .+++++++||++|.|++++|++|
T Consensus       172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            9998  9999999999888765 3345999999999999654433  466777766 47899999999999999999999


Q ss_pred             HHHHH
Q 027503          170 INQIH  174 (222)
Q Consensus       170 ~~~i~  174 (222)
                      ++.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2e-26  Score=177.65  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=114.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhHhhhcCCc
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQERFRA-ITSSYYRGAL   86 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d   86 (222)
                      ....+||+|+|++|||||||+++|.+..+...+. +.+.+...  +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            3567999999999999999999999988776654 33344333  555543 47899999999999887 8889999999


Q ss_pred             EEEEEEeCCChh-hHHHHHH-HHHHHHHH--cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---H--------------
Q 027503           87 GALLVYDITRRA-TFENTKK-WLRELREF--CSSCMAIVLVGNKSDLTHSREVNEEEGKILA---E--------------  145 (222)
Q Consensus        87 ~~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~--------------  145 (222)
                      ++|+|||+++.. ++..+.. |...+...  ...++|+++|+||+|+.+..... .....+.   .              
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK-LIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH-HHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH-HHHHHHHHHHHHHhccchhcccccc
Confidence            999999999854 4555544 44444432  24468999999999997643321 1111111   0              


Q ss_pred             -------------------Hc--CCeEEEEccccC------CCHHHHHHHHHHH
Q 027503          146 -------------------TE--GLYFMETSAMQN------LNVEDAFLQMINQ  172 (222)
Q Consensus       146 -------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~  172 (222)
                                         ..  +++|+++||++|      .|++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                               11  567999999999      9999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=7.9e-27  Score=176.22  Aligned_cols=158  Identities=21%  Similarity=0.251  Sum_probs=120.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG-----------QERFRAITSSY   81 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   81 (222)
                      +||+|+|++|||||||+++|.+..+...+.++.+....  .+...    .+.+|||||           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            69999999999999999999999887766665544433  33333    578999999           67777788888


Q ss_pred             hcC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503           82 YRG-ALGALLVYDITRRATFENT-KKWLRE---------LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY  150 (222)
Q Consensus        82 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (222)
                      ++. ++++++++++.+..++..+ ..|...         +......++|+++|+||+|+.+..   .+....++...+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            877 7777777777777777776 556542         222233459999999999997644   56677888888764


Q ss_pred             -------EEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503          151 -------FMETSAMQNLNVEDAFLQMINQIHQTTIQ  179 (222)
Q Consensus       151 -------~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  179 (222)
                             ++++||++|.|+.++|+++++.+.+.+.+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999988765543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=2.4e-26  Score=186.96  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=127.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhHhhhcC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-----RAITSSYYRG   84 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~   84 (222)
                      ..+||+|+|++|||||||+++|++...... ..+..+.+.....+.+++ .+.+.+|||||++.+     ..++..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            468999999999999999999988732211 123333444444555544 478999999999988     6788999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeEEE
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTH--SRE----VNEEEGKILAETEG---LYFME  153 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~  153 (222)
                      +|++|+|||++++.+++++..|...+....  ..++|+++|+||+|+.+  .+.    +..+++..++..++   +++++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999999877766554432  34599999999999976  333    45577788888887   78999


Q ss_pred             EccccCCCHHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      +||++ .++.++|..++..+..
T Consensus       161 tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTTCS
T ss_pred             eeecC-ChHHHHHHHHHHHHcC
Confidence            99999 8999999998876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3e-26  Score=173.94  Aligned_cols=160  Identities=13%  Similarity=0.165  Sum_probs=112.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRA   76 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   76 (222)
                      -+....++|+|+|++|||||||+++|.+..+.....++.+.+........++   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            3456789999999999999999999999876555555555555444455554   589999999          777888


Q ss_pred             hhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCe
Q 027503           77 ITSSYYRGA---LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EEGKI-LAETEGLY  150 (222)
Q Consensus        77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~  150 (222)
                      ++..++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+.+.+..  +.... +....+++
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence            888888777   9999999999887766532 2222322   3489999999999976544322  12222 32234678


Q ss_pred             EEEEccccCCCHHHHHHHHHHHH
Q 027503          151 FMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ++++||++|.|+.++|++|.+.+
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=9.4e-27  Score=190.99  Aligned_cols=158  Identities=21%  Similarity=0.343  Sum_probs=118.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+|+|.+|||||||+++|.+..+... .+|.+..  ...+...+  +.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999998876433 2444433  34445544  689999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |||++++.++..+..|+..+... ...++|++||+||+|+.+...  .+......     ...+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999988877665443 234699999999999976432  22222211     12345799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          165 AFLQMINQIHQ  175 (222)
Q Consensus       165 ~~~~l~~~i~~  175 (222)
                      +|++|++.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=3.8e-26  Score=172.40  Aligned_cols=159  Identities=19%  Similarity=0.221  Sum_probs=125.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR   83 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~   83 (222)
                      ...++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||++.+.      .++..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            4679999999999999999999998766555566666777777777766  678999999988764      45566664


Q ss_pred             --CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           84 --GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        84 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.+...+. .....++...+++++++||++|.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5999999999875   4555667666654   358999999999986544433 356778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027503          162 VEDAFLQMINQIHQTT  177 (222)
Q Consensus       162 i~~~~~~l~~~i~~~~  177 (222)
                      +.++|+++++.+.+..
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999998876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=1.6e-25  Score=164.57  Aligned_cols=150  Identities=19%  Similarity=0.188  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRG   84 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   84 (222)
                      +||+++|++|||||||+++|.+..+. ....++.+.+.....+..++.  .+.+|||||.+.       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988753 233344555566666777764  689999999876       34566778899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503           85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE  163 (222)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  163 (222)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    +....++ ..++ +++++||++|.|+.
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998644332 122222333   248999999999997542    2334444 5676 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          164 DAFLQMINQI  173 (222)
Q Consensus       164 ~~~~~l~~~i  173 (222)
                      ++|+++++.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=1.2e-25  Score=178.45  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=122.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhh-
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYY-   82 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-   82 (222)
                      ...++|+|+|++|||||||+++|.+..+.....++.+.+.....+...+  ..+.+|||||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999999876655566666666666666655  6789999999887654      335555 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           83 -RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        83 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                       ..+|++++|+|+++.++..   .|+..+..   .++|+++|+||+|+.+.+.+. .....++...+++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999875433   35555544   359999999999986544443 246778888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIH  174 (222)
Q Consensus       162 i~~~~~~l~~~i~  174 (222)
                      +.++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=5.7e-26  Score=169.70  Aligned_cols=154  Identities=21%  Similarity=0.195  Sum_probs=115.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------h--hHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------I--TSSY   81 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~   81 (222)
                      ..++|+|+|++|||||||+++|.+..+. ....++.+.+.....+.+++.  .+.+|||||.+.+..      +  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3579999999999999999999987643 233455556666677788774  578999999764211      1  1246


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503           82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN  161 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  161 (222)
                      ++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999887764 4677777766655699999999999854211       11222467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIH  174 (222)
Q Consensus       162 i~~~~~~l~~~i~  174 (222)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=1.9e-26  Score=186.87  Aligned_cols=157  Identities=16%  Similarity=0.203  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh---hhHhhhcCCcE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA---ITSSYYRGALG   87 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   87 (222)
                      ||+++|+.|||||||++++.+..++.   ...+|.+.+...  +  + ..+.+.+|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654432   245777766653  2  2 337899999999999964   46899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 027503           88 ALLVYDITRR--ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------REVNEEEGKILAET----EGLYFMET  154 (222)
Q Consensus        88 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  154 (222)
                      +|+|||+++.  ++...+..|+..+.... .++|+++|+||+|+...       +.+..++++++++.    .++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  22233333344444433 45999999999999764       34566667777775    67899999


Q ss_pred             ccccCCCHHHHHHHHHHHHHHhh
Q 027503          155 SAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      ||++ .+|.++|..+++.+.+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhH
Confidence            9998 589999999998877553

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=7.7e-25  Score=165.78  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=116.0

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERF   74 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~   74 (222)
                      ...+.+..++|+|+|++|||||||+++|.+..+. ...++.+.+........+.   .+.+|||||          .+.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            3445567889999999999999999999998743 3334444444444444443   578999999          6667


Q ss_pred             hhhhHhhhcCC---cEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHc
Q 027503           75 RAITSSYYRGA---LGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETE  147 (222)
Q Consensus        75 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~  147 (222)
                      ..++..++..+   |++++|+|+++..+..  .+..|+..   .   ++|+++|+||+|+.+...  ...+....++...
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            77777787766   9999999998764333  33334332   2   489999999999975332  2223445555553


Q ss_pred             -CCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          148 -GLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       148 -~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                       +++++++||++|.|++++|++|.+.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence             4789999999999999999999987643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.1e-25  Score=178.46  Aligned_cols=151  Identities=18%  Similarity=0.200  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------ITSSYY   82 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   82 (222)
                      .+|+|+|.+|||||||+|+|.+..+.....++.+.+.....+..++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998766666788888888888888774  789999999876543          566677


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503           83 --RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL  160 (222)
Q Consensus        83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (222)
                        ..+|++|+|+|+++.+++..+..|   +   ...++|+++|+||+|+.+.+... .....++...+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999987655443333   2   23359999999999986543332 22455777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQ  172 (222)
Q Consensus       161 gi~~~~~~l~~~  172 (222)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=3.4e-24  Score=174.32  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=127.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhh----------h
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERF----------R   75 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~----------~   75 (222)
                      +....-.|+|+|.+|||||||+|+|++..+.... .+..+..........+ +  ..+.+|||||....          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            4456788999999999999999999998876433 3334344444445554 4  57899999998543          3


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFME  153 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~  153 (222)
                      .....++..+|++++|+|++++.++.+...|+..+...   ++|+++|+||+|+........+....+....+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            56678889999999999999988888877777776653   48999999999997445555667777877775  78999


Q ss_pred             EccccCCCHHHHHHHHHHHHH
Q 027503          154 TSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       154 ~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +||++|.|++++|+++.+.+.
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSC
T ss_pred             EeCCCCCCHHHHHHHHHHhCc
Confidence            999999999999999988763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=9.4e-26  Score=196.26  Aligned_cols=165  Identities=20%  Similarity=0.249  Sum_probs=126.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE------E--EECCeEEEEEEEeCCChhhhhhhhH
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN------I--RVGDKLIKAQIWDTAGQERFRAITS   79 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~   79 (222)
                      .....+||+|+|.+|||||||+++|.+..+.....++.+.+.....      +  ..++..+.+.+||+||++.+..++.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3457899999999999999999999999988777788877776542      1  2223357899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN  159 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  159 (222)
                      .++..+|++|+|+|+++.   +.+..|+..+..... +.|+++|+||+|+.+.+.+..+..+.++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999765   556778888887765 4899999999999887788888888888889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 027503          160 LNVEDAFLQMINQIHQT  176 (222)
Q Consensus       160 ~gi~~~~~~l~~~i~~~  176 (222)
                      .|++++|+++.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999887653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2e-25  Score=178.36  Aligned_cols=153  Identities=19%  Similarity=0.181  Sum_probs=116.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc-
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR-   83 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   83 (222)
                      ..++|+|+|++|||||||+|+|.+........++.+.+...  ..+.. ...+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999876545555554444333  33443 4578999999988765      45566665 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           84 -GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        84 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                       .+|++|+|+|+++.++.   ..|...+..   .++|+++|+||+|+.+.+.+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345555544   358999999999986544443 3567788888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          163 EDAFLQMINQI  173 (222)
Q Consensus       163 ~~~~~~l~~~i  173 (222)
                      +++|+++++.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=4.3e-25  Score=176.81  Aligned_cols=155  Identities=16%  Similarity=0.153  Sum_probs=119.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhHh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR----------AITSS   80 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~   80 (222)
                      ..++|+|+|.+|||||||+|+|.+..+.....++.+.+.....+...+  ..+.+|||||...+.          .++..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            468999999999999999999999876666677777777777777766  367899999987655          22334


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503           81 YY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      ++  ..+|++|+|+|+++.+....+.   ..+...   ++|+++|+||+|+.+..... .....++...+++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            43  7999999999999865544433   334333   48999999999986533322 234667788899999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIH  174 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~  174 (222)
                      |.|++++|+++.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999998876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.3e-24  Score=168.31  Aligned_cols=168  Identities=19%  Similarity=0.168  Sum_probs=111.6

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCC----------hhhh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAG----------QERF   74 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~   74 (222)
                      ..+....++|+|+|.+|||||||+++|++..+........+.+......... .....+.||||||          .+.+
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            3445678999999999999999999999987321222222223232333333 2235789999999          3455


Q ss_pred             hhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HH-HHHHHHH--
Q 027503           75 RAITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EE-GKILAET--  146 (222)
Q Consensus        75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~-~~~~~~~--  146 (222)
                      ..+...++..   +|++++|+|++++.+... ..|+..+..   .++|+++|+||+|+.+......  +. ...+...  
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~  178 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD  178 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence            6666666665   788999999988644222 334444443   3489999999999976333211  11 1222222  


Q ss_pred             ----cCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          147 ----EGLYFMETSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       147 ----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                          .+.+++++||++|.|+.++|++|.+.+....
T Consensus       179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                5578999999999999999999998875443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=2.2e-24  Score=172.43  Aligned_cols=156  Identities=21%  Similarity=0.178  Sum_probs=122.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhh--
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYY--   82 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--   82 (222)
                      +.++|+|+|++|||||||+++|.+..+.....++.+.+.....+...+.  .+.+|||||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4689999999999999999999998876666777888887778888774  589999999887654      556666  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++++|+|+++.+   ....|+..+....  .+|+++|+||+|+.+.+.... ....++...+++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            6899999999998863   2233444443332  289999999999865333322 266778888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIH  174 (222)
Q Consensus       163 ~~~~~~l~~~i~  174 (222)
                      .++|+.+.+.+.
T Consensus       154 ~~l~~~i~~~~~  165 (271)
T 3k53_A          154 EELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=9.6e-25  Score=168.67  Aligned_cols=147  Identities=21%  Similarity=0.317  Sum_probs=106.7

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY   82 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   82 (222)
                      .......++|+|+|++|||||||+++|.+..+...   ..++.+.++         ....+.+|||||++.+...+..++
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence            34456789999999999999999999999876542   333333222         335789999999999988888888


Q ss_pred             cC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHc
Q 027503           83 RG----ALGALLVYDIT-RRATFENTKKWLRELREF----CSSCMAIVLVGNKSDLTHSREVN------EEEGKILAETE  147 (222)
Q Consensus        83 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~  147 (222)
                      ..    +|++|+|+|++ ++.++..+..|+..+...    ...++|+++|+||+|+.+...+.      .++...++...
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            77    89999999999 888888888888776554    34569999999999998755443      34456667777


Q ss_pred             CCeEEEEccccCCC
Q 027503          148 GLYFMETSAMQNLN  161 (222)
Q Consensus       148 ~~~~~~~Sa~~~~g  161 (222)
                      +++|+++|+++|.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            78899999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.4e-23  Score=178.40  Aligned_cols=161  Identities=17%  Similarity=0.177  Sum_probs=117.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERFRAIT   78 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   78 (222)
                      +..++|+|+|.+|||||||+|+|++..+. ....++.+.+.....+..++.  .+.+|||||+          +.+..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            46799999999999999999999988764 344455566666666777774  5899999997          4455444


Q ss_pred             H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHH----HcCCeEE
Q 027503           79 S-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KILAE----TEGLYFM  152 (222)
Q Consensus        79 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~  152 (222)
                      . .++..+|++++|+|++++.++++. .|+..+..   .++|+++|+||+|+.+.+....++. ..+..    ..+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999998887775 46665554   3489999999999986555433333 22222    2468999


Q ss_pred             EEccccCCCHHHHHHHHHHHHHHh
Q 027503          153 ETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ++||++|.|+.++|+.+.+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998877653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.7e-22  Score=167.47  Aligned_cols=162  Identities=17%  Similarity=0.197  Sum_probs=123.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR---------AITSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   80 (222)
                      ...++|+++|.+|||||||+++|.+..+.....+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998775433334444455555555554  578999999975321         12224


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503           81 YYRGALGALLVYDITRRA--TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+...+  +....++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            455799999999998876  67777788888876554 5899999999999764332  445566667889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 027503          159 NLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~~  176 (222)
                      |.|++++|+++.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=3.5e-23  Score=176.90  Aligned_cols=156  Identities=16%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY   82 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   82 (222)
                      .++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            478999999999999999999987643 34456666677667778877  56899999998765533        34478


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++++|+|++++.++..+..+...+....  ++|+++|+||+|+......   ....+......+++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999887754433333333332  5899999999999765432   223344433478999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIH  174 (222)
Q Consensus       163 ~~~~~~l~~~i~  174 (222)
                      +++|++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=3.3e-23  Score=176.94  Aligned_cols=163  Identities=18%  Similarity=0.163  Sum_probs=121.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRAI   77 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   77 (222)
                      .+..++|+++|.+|+|||||+++|.+... .....++.+.+.....+..++.  .+.+|||||          ++.+..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35679999999999999999999997653 2334455556655566677774  789999999          5666666


Q ss_pred             hH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027503           78 TS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-----GLYF  151 (222)
Q Consensus        78 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~  151 (222)
                      .. .++..+|++|+|+|++++..... ..|+..+..   .++|+++|+||+|+.+.+....++....+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            55 47899999999999998654333 445555554   34899999999999876666666666666554     5799


Q ss_pred             EEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          152 METSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +++||++|.|+.++|+++.+.+.+..
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998775543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=7.9e-24  Score=178.23  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=118.5

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-----
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI-----   77 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----   77 (222)
                      |...+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+...+.. .+.+|||||++.+..+     
T Consensus        26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~  104 (423)
T 3qq5_A           26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRV  104 (423)
T ss_dssp             CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCH
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHH
Confidence            34456678899999999999999999999988763 3344555666666777776653 7899999998876543     


Q ss_pred             --hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503           78 --TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus        78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  155 (222)
                        +..++..+|++|+|+|+...   .....|+..+...   ++|+++|+||+|+......  +....++...+++++++|
T Consensus       105 ~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS  176 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS  176 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred             HHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence              45688899999999999433   2335566666655   4899999999999765543  566677777889999999


Q ss_pred             cccCCCHHHHHHHHHHHHH
Q 027503          156 AMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       156 a~~~~gi~~~~~~l~~~i~  174 (222)
                      |++|.|++++|++|.+.+.
T Consensus       177 Aktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHhhh
Confidence            9999999999999988774

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=2e-22  Score=163.19  Aligned_cols=156  Identities=20%  Similarity=0.198  Sum_probs=110.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSS   80 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   80 (222)
                      -+..+|+|+|.+|||||||+|+|++..+... ..+..+.......+..++  ..+.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4667899999999999999999999887543 233333333333334443  5789999999765        4556677


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCeEEEEcccc
Q 027503           81 YYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                      +++.+|++++|+|++++.+...  .|+ ..+.... .+.|+++|+||+|+.+... + .+....+  ....+++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence            8999999999999998754432  333 4444432 3589999999999875322 1 1222222  1235799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|++++|+.+.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=3.5e-22  Score=170.88  Aligned_cols=152  Identities=24%  Similarity=0.264  Sum_probs=116.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhHhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-RFR--------AITSSYY   82 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~~   82 (222)
                      ++|+|+|.+|||||||+|+|.+..+. ....++.+.+.....+.+++  ..+.+|||||.. .+.        .....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            89999999999999999999987643 44456666777777778877  468999999987 543        2245678


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++|+|+|++++.++++.. ++..+     .++|+++|+||+|+.+.  ...++...+.. .+++++++||++|.|+
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi  392 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL  392 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence            9999999999999987776543 22322     24899999999999653  33344444332 4478999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++|++|.+.+..
T Consensus       393 ~eL~~~l~~~~~~  405 (482)
T 1xzp_A          393 EKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999997664

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.1e-22  Score=167.06  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=119.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhhhc---CC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITSSYYR---GA   85 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~   85 (222)
                      .+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.+|||||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999986543333333444444445555542 3689999999653    3334455544   59


Q ss_pred             cEEEEEEeCCC---hhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcccc
Q 027503           86 LGALLVYDITR---RATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQ  158 (222)
Q Consensus        86 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  158 (222)
                      |++|+|+|+++   ..+++.+..|+..+..+..  ..+|+++|+||+|+.+.    .+....+.....  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788888889998887652  46999999999998752    234566666666  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~  175 (222)
                      +.|+++++++|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999888753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=8.8e-22  Score=167.40  Aligned_cols=151  Identities=23%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITSSYY   82 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   82 (222)
                      .+|+|+|.+|||||||+|+|.+.... ....++.+.+.....+..++.  .|.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987653 344566666777777888774  579999999663         344567789


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEcccc
Q 027503           83 RGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  158 (222)
                      +.+|++++|+|+.++.+..+  +..|+   ...   ++|+++|+||+|+.+.  . .... ..+. ..++ +++++||.+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999988655433  22332   222   3899999999997531  1 1222 3343 4566 789999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~  175 (222)
                      |.|+.++|+++.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=3.7e-21  Score=150.85  Aligned_cols=164  Identities=13%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC--CcceeeEEEEEEECCeEEEEEEEeCCCh-----------hhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP--TIGVEFAYRNIRVGDKLIKAQIWDTAGQ-----------ERF   74 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~   74 (222)
                      ..+..++|+|+|.+|||||||+|+|++..+.....+  +.+.......+..++  ..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345689999999999999999999999887666555  445555556666766  46899999993           334


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVN------EEEGKILAET  146 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~  146 (222)
                      .......++.+|++|+|+|+++.... . ..|+..+....  ....|++||+||+|+.+...+.      .+..+.+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~-~-~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEE-E-HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSH-H-HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHH-H-HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            45555667789999999998764331 1 22333332211  1126899999999987644333      2356777778


Q ss_pred             cCCeEEEEccccC-----CCHHHHHHHHHHHHHH
Q 027503          147 EGLYFMETSAMQN-----LNVEDAFLQMINQIHQ  175 (222)
Q Consensus       147 ~~~~~~~~Sa~~~-----~gi~~~~~~l~~~i~~  175 (222)
                      .+..++.++...+     .++.++|+.+...+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888888776643     6788888777665543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.6e-21  Score=160.76  Aligned_cols=124  Identities=19%  Similarity=0.233  Sum_probs=102.1

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503           52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI  120 (222)
Q Consensus        52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  120 (222)
                      ..+.+++  +.+.+||++|++.++.+|..++++++++|+|||+++          ..++.+...|+..+.... -.++|+
T Consensus       186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            4455554  789999999999999999999999999999999999          457888888888776542 245999


Q ss_pred             EEEEeCCCCCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          121 VLVGNKSDLTHSR---------------EVNEEEGKILAE-----------TEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       121 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +||+||+|+.+.+               .++.+++..++.           ..++++++|||+++.||.++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985322               356778888876           35678999999999999999999999887


Q ss_pred             Hhh
Q 027503          175 QTT  177 (222)
Q Consensus       175 ~~~  177 (222)
                      +..
T Consensus       344 ~~~  346 (353)
T 1cip_A          344 KNN  346 (353)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.86  E-value=6.9e-21  Score=160.21  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=114.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE------------------------ECCeEEEE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR------------------------VGDKLIKA   63 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~   63 (222)
                      .....++|+++|++++|||||+++|.+.......      .+....+.                        .......+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL------GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   77 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS------EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc------CccccceeeccccccccceecccccccccccccccccceE
Confidence            3457899999999999999999999875432211      00000000                        01123689


Q ss_pred             EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHH
Q 027503           64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGK  141 (222)
Q Consensus        64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~  141 (222)
                      .+|||||++.+...+...+..+|++|+|+|++++.++.....|+..+.....  .|+++|+||+|+.+.....  .++..
T Consensus        78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~  155 (403)
T 3sjy_A           78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQIK  155 (403)
T ss_dssp             EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999998766777777776655542  4899999999997632211  11122


Q ss_pred             HHHHHc---CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          142 ILAETE---GLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       142 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .+....   +++++++||++|.|+.+++++|.+.+.
T Consensus       156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            222221   578999999999999999999887653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=3.5e-21  Score=165.19  Aligned_cols=157  Identities=18%  Similarity=0.160  Sum_probs=111.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY   81 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   81 (222)
                      ....++|+++|++++|||||+++|.+..       +.....+..+.+.....+.+++  ..+.+|||||++.|...+...
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3568999999999999999999999866       2233344444554444555665  578999999999998888999


Q ss_pred             hcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEE
Q 027503           82 YRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETE----GLYFM  152 (222)
Q Consensus        82 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~  152 (222)
                      +..+|++|+|+|+++   +++.+.+    ..+..   .++|+++|+||+|+.+....  ..++...+....    +++++
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            999999999999998   3443332    22332   24888999999999753211  122334444444    57899


Q ss_pred             EEccccCCCHHHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ++||++|.|+.+++++|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999988775

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.3e-20  Score=156.11  Aligned_cols=159  Identities=20%  Similarity=0.131  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh---------hhhhhhHhhhcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------RFRAITSSYYRG   84 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~   84 (222)
                      .|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+++  ..+.+|||+|..         .+... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            499999999999999999999876555555666667777888887  467999999962         23332 335789


Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHc---CCeEEEEcccc
Q 027503           85 ALGALLVYDITRRA--TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-EEEGKILAETE---GLYFMETSAMQ  158 (222)
Q Consensus        85 ~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~~~~Sa~~  158 (222)
                      +|++++|+|++++.  ....+..|...+......+.|+++|+||+|+....... ...+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  55666667777766655568999999999987533100 11222333444   34689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~  175 (222)
                      |.|+++++++|.+.+..
T Consensus       338 g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcc
Confidence            99999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1e-20  Score=159.41  Aligned_cols=160  Identities=23%  Similarity=0.189  Sum_probs=103.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceee--EEEEEEE-------------C--C----eEEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEF--AYRNIRV-------------G--D----KLIKAQ   64 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~--~~~~~~~-------------~--~----~~~~~~   64 (222)
                      ....++|+++|+.++|||||+++|.+..   +.....+..+.+.  ....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3467999999999999999999998543   2233334233332  2222211             1  1    136899


Q ss_pred             EEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHH
Q 027503           65 IWDTAGQERFRAITSSYYRGALGALLVYDITRR----ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEE  138 (222)
Q Consensus        65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~  138 (222)
                      +|||||++.|...+...+..+|++|+|+|++++    ++.+.+.    .+... .. .|+++++||+|+.+...  ...+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~~-~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-GI-DKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-TC-CCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-CC-CeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999988888888899999999999964    3444433    22222 21 57999999999976443  2234


Q ss_pred             HHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          139 EGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       139 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +...+...   .+++++++||++|.|+++++++|.+.+.
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            45555554   3578999999999999999999887543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.86  E-value=5.6e-22  Score=168.90  Aligned_cols=152  Identities=20%  Similarity=0.251  Sum_probs=105.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY   82 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   82 (222)
                      .++|+|+|++|+|||||+|+|.+..+. ....++.+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            578999999999999999999987654 34456666666656677777  46799999997654332        23467


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence            89999999999998766554 34444442     26999999999997644332  111111  3568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      ++++++|.+.+..
T Consensus       372 ~eL~~~i~~~~~~  384 (462)
T 3geh_A          372 DSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=8e-21  Score=166.07  Aligned_cols=159  Identities=19%  Similarity=0.226  Sum_probs=111.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CCCcceeeEE--EEEEE---CCeEEEEEEEeCCCh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR-----LDS------KPTIGVEFAY--RNIRV---GDKLIKAQIWDTAGQ   71 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~G~   71 (222)
                      +...+|+|+|+.++|||||+++|+...  +.     ...      ....+.++..  ..+.+   ++..+.+.||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            356799999999999999999998632  11     000      0112223322  22222   455678999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL--  149 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  149 (222)
                      ..|...+..++..+|++|+|+|++++........|...+.    .++|+++|+||+|+.+..  ..+....+....++  
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999877776666655443    348999999999997543  23445666666676  


Q ss_pred             -eEEEEccccCCCHHHHHHHHHHHHH
Q 027503          150 -YFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       150 -~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                       +++++||++|.|++++|+++++.+-
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence             4999999999999999999887653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.85  E-value=6.6e-21  Score=151.19  Aligned_cols=162  Identities=14%  Similarity=0.136  Sum_probs=107.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCC-cceeeEEEEEEECCeEEEEEEEeCCChhhhh-----------
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPT-IGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-----------   75 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------   75 (222)
                      ....++|+|+|++|||||||+++|++... .....++ .+.......+..++  ..+.||||||...+.           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34679999999999999999999998773 3333343 44555555566665  468999999976542           


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGN-KSDLTHSREVNE-------EEGKILAE  145 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~  145 (222)
                      .....+++.+|++|+|+|+++.....  ..++..+.....  ...|+++|+| |+|+... .+..       .....+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence            12234678999999999998632211  122233333321  1256666666 9999742 2222       22334555


Q ss_pred             HcCCe---E--EEEccccCCCHHHHHHHHHHHHHH
Q 027503          146 TEGLY---F--METSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       146 ~~~~~---~--~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ..+..   +  +++||++|.|+.++|+++.+.+.+
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            55432   2  789999999999999999988765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=6.7e-21  Score=155.07  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=100.9

Q ss_pred             EEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCC
Q 027503           50 AYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCM  118 (222)
Q Consensus        50 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~  118 (222)
                      ....+...+  +.+.+||++|++.++.+|..++++++++|+|+|++          +..++.+...|+..+.... ..++
T Consensus       158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            334455554  78999999999999999999999999999999664          5667777777777765433 2459


Q ss_pred             eEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          119 AIVLVGNKSDLTHSR----------------EVNEEEGKILAE----------TEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       119 p~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++|++||+|+.+++                ..+.+++..+..          ..++.++++||+++.+|+++|..+.+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            999999999986433                467778887743          456789999999999999999999999


Q ss_pred             HHHhh
Q 027503          173 IHQTT  177 (222)
Q Consensus       173 i~~~~  177 (222)
                      +.+..
T Consensus       316 Il~~~  320 (327)
T 3ohm_A          316 ILQLN  320 (327)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            88654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=9.2e-22  Score=157.46  Aligned_cols=160  Identities=16%  Similarity=0.219  Sum_probs=92.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChh-------h
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-------R   73 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~   73 (222)
                      +...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            456899999999999999999998876654332        3455555555555556666799999999962       2


Q ss_pred             hhhhh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           74 FRAIT-------SSYYR-------------GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        74 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      +..+.       ..++.             .+|+++++++.....-...-..++..+..    ++|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            33332       33333             37899999977652211221223444433    59999999999986533


Q ss_pred             CCCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          134 EVNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ....  ..........+++++.+|+.++.|+.+++++|.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            2211  22344455678999999999999999999887653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=1.5e-20  Score=164.06  Aligned_cols=159  Identities=21%  Similarity=0.257  Sum_probs=114.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CC--------CCCcceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FRL-----DS--------KPTIGVEFAYRNIRV---GDKLIKAQIWDTAGQ   71 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   71 (222)
                      +...+|+|+|+.++|||||+++|+...  +..     ..        ....+.......+.+   ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            467899999999999999999997531  110     00        011111111112222   455678999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027503           72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL--  149 (222)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  149 (222)
                      ..|...+...+..+|++|+|+|++++...+....|.....    .++|+++|+||+|+.+..  ..+...++....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999888999999999999999999877777666655443    348999999999997533  23445566666676  


Q ss_pred             -eEEEEccccCCCHHHHHHHHHHHHH
Q 027503          150 -YFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       150 -~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                       +++++||++|.|+.++|+++++.+-
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcc
Confidence             4899999999999999999887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.85  E-value=1.3e-20  Score=158.82  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEEEE---------------C--C----eEEEE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNIRV---------------G--D----KLIKA   63 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~   63 (222)
                      .....++|+++|+.++|||||+++|.+...   .....+..+.+.......+               +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            346789999999999999999999986432   2222343333333222222               0  1    13689


Q ss_pred             EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCH
Q 027503           64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRR----ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNE  137 (222)
Q Consensus        64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~  137 (222)
                      .+|||||++.|.......+..+|++|+|+|++++    ++.+.+.    .+.... . .|+++|+||+|+.+...  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~-~-~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG-Q-KNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT-C-CCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC-C-CcEEEEEECccCCCHHHHHHHH
Confidence            9999999999888888888899999999999964    3444433    222222 1 57899999999976332  112


Q ss_pred             HHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          138 EEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       138 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ++...+...   .+++++++||++|.|+++++++|.+.+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            233444433   3578999999999999999998886543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=1.1e-20  Score=160.65  Aligned_cols=161  Identities=22%  Similarity=0.161  Sum_probs=109.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----------h
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-----------I   77 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~   77 (222)
                      +..++|+|+|++|||||||+|+|.+.... ....++.+.+.....+.+++.  .+.+|||+|......           .
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            45699999999999999999999987642 233445555555566777775  578999999743221           1


Q ss_pred             -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeE
Q 027503           78 -TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK-IL----AETEGLYF  151 (222)
Q Consensus        78 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~  151 (222)
                       ...++..+|++++|+|+.++.+..+. .+...+..   .++|+++|+||+|+.+.+....++.. .+    ....++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13467889999999999987665542 23333332   35899999999999765443333322 22    22345789


Q ss_pred             EEEccccCCCHHHHHHHHHHHHHHh
Q 027503          152 METSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      +++||++|.|+.++|+.+.+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998766543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=6.2e-21  Score=157.23  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=94.3

Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCMAIVLVGNKS  127 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~  127 (222)
                      ..+.+.+|||+|++.++.+|..++++++++|+|||++          +..+++++..|+..+.... ..++|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7789999888888876543 2459999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEccccCCCHHHHHHHHH
Q 027503          128 DLTHSRE--V-------------------NEEEGKILAET----------------EGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus       128 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |+.+++.  +                   +.+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853211  1                   13556666432                234579999999999999999999


Q ss_pred             HHHHHhhh
Q 027503          171 NQIHQTTI  178 (222)
Q Consensus       171 ~~i~~~~~  178 (222)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98875543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=1.8e-20  Score=151.78  Aligned_cols=157  Identities=20%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhH
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-R--------FRAITS   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~   79 (222)
                      -+..+|+|+|++|||||||+|+|++..+... ..+..+.......+..++  ..+.+|||||.. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            3556899999999999999999999876432 223233333333344444  578999999986 2        233445


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      .++..+|++++|+|+++ -+  ....|+..  .....+.|+++|+||+|+........+....+....++ .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLN--KLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHH--HHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            67889999999999977 22  22223322  12234589999999999875222223344555555665 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|+.++++.+.+.+
T Consensus       159 g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          159 GLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=5.7e-22  Score=168.42  Aligned_cols=152  Identities=18%  Similarity=0.181  Sum_probs=99.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSSYY   82 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~   82 (222)
                      .++|+|+|.+|||||||+|+|.+..+... ..+..+.+.....+...+  ..+.+|||||.+        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            36899999999999999999998775422 223333333333333333  578999999985        5666778899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCC
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLN  161 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  161 (222)
                      ..+|++|+|+|+.++.+..+. .+...+.   ..++|+++|+||+|+.....    ....+. ..++ +++++||.+|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence            999999999999987665442 2222232   34589999999999865321    111222 3454 789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          162 VEDAFLQMINQIH  174 (222)
Q Consensus       162 i~~~~~~l~~~i~  174 (222)
                      +.++++++.+.+.
T Consensus       152 v~~L~~~i~~~l~  164 (436)
T 2hjg_A          152 LGDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHHTGG
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999987764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.84  E-value=2e-20  Score=158.81  Aligned_cols=155  Identities=18%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRV   56 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   56 (222)
                      +....++|+++|++++|||||+++|+....                               .....+..+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            345679999999999999999999964321                               1111234455555555555


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCC
Q 027503           57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---FE---NTKKWLRELREFCSSCMA-IVLVGNKSDL  129 (222)
Q Consensus        57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl  129 (222)
                      ++  ..+.||||||++.|...+...+..+|++|+|+|++++..   |+   .....+..+..   .++| +++++||+|+
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            54  589999999999999999999999999999999998632   11   12222222222   2366 8999999998


Q ss_pred             CCCCC------CCHHHHHHHHHHcC------CeEEEEccccCCCHHHHHH
Q 027503          130 THSRE------VNEEEGKILAETEG------LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       130 ~~~~~------~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  167 (222)
                      .....      ...++...+....+      ++++++||++|.|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            54211      11122333444433      5799999999999999765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.9e-21  Score=144.89  Aligned_cols=118  Identities=22%  Similarity=0.389  Sum_probs=88.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG   84 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (222)
                      ...+.++|+|+|++|||||||+++|.+..+...   ..++.+.++         ....+.+|||||.+.+...+..++..
T Consensus        44 ~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~  114 (193)
T 2ged_A           44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT  114 (193)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHh
Confidence            345789999999999999999999999876431   222222211         33578999999999887777777765


Q ss_pred             ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCCCCCCC
Q 027503           85 ----ALGALLVYDIT-RRATFENTKKWLRELREF----CSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        85 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                          +|++|+|||++ +..++..+..|+..+...    ...++|+++|+||+|+.+...
T Consensus       115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence                89999999999 889999888888776544    234699999999999976443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.2e-21  Score=162.51  Aligned_cols=162  Identities=15%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCC--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------hh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSK--------PTIGVEFAYRNIRVGDKLIKAQIWDTAGQ-------ER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   73 (222)
                      ...++|+|+|++|+|||||+++|++.... ....        ++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45789999999999999999998765432 2221        33333433344455666778999999998       66


Q ss_pred             hhhhhH-------hhhcCCc-------------EEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           74 FRAITS-------SYYRGAL-------------GALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        74 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      +..++.       .++..++             +++++++.. ..++..+. .|+..+    ..++|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            666665       5555433             444444431 33444433 233333    345899999999999765


Q ss_pred             CCCCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          133 REVNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       133 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                      +.+..  +.+..++...+++++++||+++.+ ++.|.++.+.+.+..
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            44433  355666667789999999999999 888988888886543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=9.3e-23  Score=175.92  Aligned_cols=159  Identities=17%  Similarity=0.133  Sum_probs=115.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      ++.++|+++|++++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.|..++..++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            45789999999999999999999987766555566666555444444221 36899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHH---HHHc--CCeEEEEccccCCCH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKIL---AETE--GLYFMETSAMQNLNV  162 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi  162 (222)
                      +|+|++++.......    .+......++|++|++||+|+.+...  +..+. ..+   ...+  .++++++||++|.|+
T Consensus        81 LVVDa~dg~~~qt~e----~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l-~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           81 LVVAADDGVMKQTVE----SIQHAKDAHVPIVLAINKCDKAEADPEKVKKEL-LAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             EECBSSSCCCHHHHH----HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHH-HHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEEECCCCccHHHHH----HHHHHHHcCCcEEEEEecccccccchHHHHHHH-HhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            999999865443322    22333344589999999999975321  11111 111   1111  257999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIH  174 (222)
Q Consensus       163 ~~~~~~l~~~i~  174 (222)
                      +++|+++...+.
T Consensus       156 ~eLle~I~~l~~  167 (537)
T 3izy_P          156 MALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhh
Confidence            999999887653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.83  E-value=1.9e-20  Score=160.96  Aligned_cols=151  Identities=18%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEECCe
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRVGDK   59 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (222)
                      ..+||+++|++++|||||+++|+....                               .....+..+.+.....+...  
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence            569999999999999999999975411                               11112233334444444443  


Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH------HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN------TKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      ...+.||||||++.|...+..++..+|++|+|+|++++.++..      ....+..+.. ... .|++||+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~-~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI-HNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC-CCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC-CcEEEEEECcCcccch
Confidence            3678999999999999999999999999999999998754322      1112222222 221 4699999999997633


Q ss_pred             CCCHHHH----HHHHHHc-----CCeEEEEccccCCCHHHH
Q 027503          134 EVNEEEG----KILAETE-----GLYFMETSAMQNLNVEDA  165 (222)
Q Consensus       134 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~~  165 (222)
                      ....++.    ..+....     +++++++||++|.|+.++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            3222222    2233322     468999999999999853

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=2.5e-20  Score=154.14  Aligned_cols=125  Identities=15%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503           52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI  120 (222)
Q Consensus        52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  120 (222)
                      ..+.+++  +.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.... ..++|+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            3455554  789999999999999999999999999999999999          678998888888876542 245999


Q ss_pred             EEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          121 VLVGNKSDLTHSR----------------EVNEEEGKILAE-----------TEGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       121 ivv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      +||+||+|+.+++                .++.+++..++.           ..++.++++||+++.||+++|+++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999985322                256677777652           3457899999999999999999999988


Q ss_pred             HHhhh
Q 027503          174 HQTTI  178 (222)
Q Consensus       174 ~~~~~  178 (222)
                      .+...
T Consensus       352 ~~~~l  356 (362)
T 1zcb_A          352 LHDNL  356 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=4.6e-20  Score=156.56  Aligned_cols=155  Identities=23%  Similarity=0.216  Sum_probs=105.6

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC--CC----------CC---------------------CCcceeeEEEEE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR--LD----------SK---------------------PTIGVEFAYRNI   54 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~--~~----------~~---------------------~~~~~~~~~~~~   54 (222)
                      .....++|+++|++++|||||+++|++....  ..          ..                     ...+.+.....+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            3356799999999999999999999865311  00          00                     111222222333


Q ss_pred             EECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           55 RVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ...+  ..+.+|||||++.|...+..++..+|++|+|+|++++.. .....|+..+....  -.|+++|+||+|+.+...
T Consensus       100 ~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~  174 (434)
T 1zun_B          100 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDE  174 (434)
T ss_dssp             ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCH
T ss_pred             ecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccH
Confidence            3333  578999999999998888889999999999999998643 22344444443332  136899999999975321


Q ss_pred             --C--CHHHHHHHHHHcC-----CeEEEEccccCCCHHHHHH
Q 027503          135 --V--NEEEGKILAETEG-----LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       135 --~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  167 (222)
                        +  ..++...++...+     ++++++||++|.|+.++++
T Consensus       175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence              1  1233455666666     6799999999999988543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=1.3e-19  Score=158.51  Aligned_cols=157  Identities=20%  Similarity=0.161  Sum_probs=105.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------------DKLIKAQIWDTAGQERF   74 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~   74 (222)
                      +.++|+|+|++++|||||+++|.+..+........+.+.........                .....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            56899999999999999999998765533221111111111111110                01125899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-------------HH
Q 027503           75 RAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-------------EE  138 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~~  138 (222)
                      ..++...+..+|++|+|+|+++   +++++.+..    +..   .++|+++++||+|+.......             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999999   556554332    222   348999999999996422110             00


Q ss_pred             H----------HHHHHHHc---------------CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          139 E----------GKILAETE---------------GLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       139 ~----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .          ........               .++++++||++|.|++++++++...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0          01111111               237999999999999999999988664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.81  E-value=1.9e-20  Score=157.66  Aligned_cols=148  Identities=18%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCC---C----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--------EFRLD---S----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      ...++|+++|++++|||||+++|.+.        .+...   .    ....+.++......++.....+.+|||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45799999999999999999999873        11110   0    001222222233334333357899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG--  148 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  148 (222)
                      ...+..++..+|++|+|+|++++... ....|+..+...   ++| +++++||+|+.+....   ..++...+....+  
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            88888999999999999999987543 335555555443   478 8899999999742211   1123445555554  


Q ss_pred             ---CeEEEEccccCCC
Q 027503          149 ---LYFMETSAMQNLN  161 (222)
Q Consensus       149 ---~~~~~~Sa~~~~g  161 (222)
                         ++++++||++|.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence               6899999999987

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=1.1e-20  Score=161.41  Aligned_cols=156  Identities=17%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhH
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG--------QERFRAITS   79 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~   79 (222)
                      ......+|+|+|.+|||||||+|+|.+..+... ..+.+.+..............+.+|||||        ++.+...+.
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            345578999999999999999999998776422 23334444444444444446889999999        667778888


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQ  158 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  158 (222)
                      .++..+|++|+|+|..++.+..+  .|+..+.  ...++|+++|+||+|+.+..    ....++. ..++ .++++||.+
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l--~~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~  168 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAAD--EEVAKIL--YRTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH  168 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHH--HHHHHHH--TTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred             hhHhhCCEEEEEEeCCCCCChHH--HHHHHHH--HHcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence            99999999999999887543332  2322222  22458999999999986421    1111111 2232 467999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|+.++++.+.+.+
T Consensus       169 g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          169 GLGLGDLLDAVAEHF  183 (456)
T ss_dssp             CTTHHHHHHHHHTTG
T ss_pred             ccchHHHHHHHHhhc
Confidence            999999999987654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=5e-20  Score=150.44  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCMAIVLVGNKSD  128 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D  128 (222)
                      .+.+.+||++|++.++.+|..++++++++|+|+|++          +..++.+...|+..+.... ..++|++|++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            378999999999999999999999999999999998          6778888888887776543 35699999999999


Q ss_pred             CCCC---------------CCCCHHHHHHHHHH---------------------------cCCeEEEEccccCCCHHHHH
Q 027503          129 LTHS---------------REVNEEEGKILAET---------------------------EGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       129 l~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +.++               ...+.+++..+...                           +.+.++++||+++.+|+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            8531               11245566554432                           23778999999999999999


Q ss_pred             HHHHHHHHH
Q 027503          167 LQMINQIHQ  175 (222)
Q Consensus       167 ~~l~~~i~~  175 (222)
                      ..+.+.+.+
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999987

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.81  E-value=9.8e-20  Score=157.46  Aligned_cols=116  Identities=19%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------C---------CCCCcceeeEEEEEEECCeEEEEEEEe
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-------------D---------SKPTIGVEFAYRNIRVGDKLIKAQIWD   67 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-------------~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D   67 (222)
                      +...+|+|+|++|+|||||+++|+......             .         ..+..+.......+...+  ..+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            457899999999999999999996211000             0         011223333344455554  6789999


Q ss_pred             CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |||+..+...+..+++.+|++|+|+|++++........| ..+..   .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999997766665544 33332   3489999999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.81  E-value=6.6e-20  Score=152.28  Aligned_cols=147  Identities=11%  Similarity=0.082  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      +|+++|++++|||||+++|+        ....+.+.....+..++  ..+.+|||||++.|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        12233333333344333  468999999999998878888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHc---CCeEEE--Ecccc---CCC
Q 027503           94 ITRRATFENTKKWLRELREFCSSCMAI-VLVGN-KSDLTHSREVNE--EEGKILAETE---GLYFME--TSAMQ---NLN  161 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~g  161 (222)
                       +.. .+.....|+..+...   ++|. ++++| |+|+ +......  ++.+.+....   .+++++  +||++   +.|
T Consensus        93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             543 344555566555544   3677 88899 9998 4322211  3344444433   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027503          162 VEDAFLQMINQIHQT  176 (222)
Q Consensus       162 i~~~~~~l~~~i~~~  176 (222)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998887654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.81  E-value=8.1e-20  Score=153.39  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA   76 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   76 (222)
                      ..++|+++|++++|||||+++|.+..       +...       .....+.+.......+......+.+|||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998741       1000       000122222222333333335789999999999988


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC----
Q 027503           77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG----  148 (222)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----  148 (222)
                      .+..++..+|++|+|+|++++...+. ..++..+...   ++| +++++||+|+.+....   ..++...+....+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88889999999999999998643333 2333333332   478 6899999998742211   1234455666655    


Q ss_pred             -CeEEEEccccCCC----------HHHHHHHHHHHH
Q 027503          149 -LYFMETSAMQNLN----------VEDAFLQMINQI  173 (222)
Q Consensus       149 -~~~~~~Sa~~~~g----------i~~~~~~l~~~i  173 (222)
                       ++++++||++|.+          +.++++.+.+.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             5899999999764          777776665543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=3e-19  Score=148.91  Aligned_cols=125  Identities=14%  Similarity=0.206  Sum_probs=99.8

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503           52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI  120 (222)
Q Consensus        52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  120 (222)
                      ..+.+++  +.+.+|||+|++.++.+|..++++++++|+|||+++          ..++.++..|+..+.... ..++|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3455554  789999999999999999999999999999999999          889999999998887653 356899


Q ss_pred             EEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEccc
Q 027503          121 VLVGNKSDLTHSRE---V---------------------------NEEEGKILA-----ET--------EGLYFMETSAM  157 (222)
Q Consensus       121 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  157 (222)
                      +||+||+|+.+.+.   +                           ..+.+..|+     ..        .++.++++||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999853221   1                           134555553     22        24678899999


Q ss_pred             cCCCHHHHHHHHHHHHHHhhh
Q 027503          158 QNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      ++.||+++|.++.+.+.....
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHH
Confidence            999999999999888876554

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.81  E-value=1.2e-20  Score=160.12  Aligned_cols=155  Identities=18%  Similarity=0.195  Sum_probs=103.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC-----------------------------CCCCcceeeEEEEEEECC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLD-----------------------------SKPTIGVEFAYRNIRVGD   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (222)
                      ...++|+++|++++|||||+++|+..  .+...                             ..+..+.+.....+... 
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence            35789999999999999999999864  22110                             01223333333333333 


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH----cCCCC-eEEEEEeCCCCCCCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF----CSSCM-AIVLVGNKSDLTHSR  133 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~-p~ivv~nK~Dl~~~~  133 (222)
                       ...+.+|||||++.|...+..++..+|++|+|+|+++ .+|+.+..|.....++    ...++ |++|++||+|+.+..
T Consensus        83 -~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           83 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence             3579999999999999989999999999999999998 6676544333222111    11223 688999999997521


Q ss_pred             ------CCCHHHHHHHHHHcC-----CeEEEEccccCCCHHHHHH
Q 027503          134 ------EVNEEEGKILAETEG-----LYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus       134 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  167 (222)
                            ....++...++...+     ++++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  111234556666655     6799999999999986654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=2.4e-20  Score=150.69  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=103.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCC----------------------ccee-----------
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPT----------------------IGVE-----------   48 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~----------------------~~~~-----------   48 (222)
                      .....++|+|+|.+|||||||+|+|++..+.+..      .|+                      .+.+           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            4456789999999999999999999998874221      121                      0000           


Q ss_pred             ----------e--EEEEEEECCeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHH
Q 027503           49 ----------F--AYRNIRVGDKLIKAQIWDTAGQE-------------RFRAITSSYYRGALGAL-LVYDITRRATFEN  102 (222)
Q Consensus        49 ----------~--~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~  102 (222)
                                .  ....+...+ ...+.||||||..             .+..+...++..++.+| +|+|+++..+...
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~  180 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD  180 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred             HhcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence                      0  000011110 2478999999953             34567778888888776 6999987644333


Q ss_pred             HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEccccCCCHHHHHHHHHH
Q 027503          103 TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET--EG-LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       103 ~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ...|+..   ....+.|+++|+||+|+.+......+........  .+ .+++++||++|.|++++|+++.+
T Consensus       181 ~~~~~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          181 ALKIAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHHH---HCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHHHH---hCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            3233333   3345689999999999976443222222110001  12 36889999999999999998877

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.80  E-value=2.4e-20  Score=159.54  Aligned_cols=155  Identities=18%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------------------------CCCCCcceeeEEEEEEECC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRL-----------------------------DSKPTIGVEFAYRNIRVGD   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   58 (222)
                      ...++|+++|++++|||||+++|+..  .+..                             ......+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999742  1110                             0011222232223344444


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSRE  134 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~  134 (222)
                        ..+.||||||++.|...+...+..+|++|+|+|++++.   +|+....|...+......++| ++|++||+|+.+...
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              57899999999999988888999999999999999863   333222232222222223477 899999999964211


Q ss_pred             ------CCHHHHHHHHHHc-------CCeEEEEccccCCCHHHHH
Q 027503          135 ------VNEEEGKILAETE-------GLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       135 ------~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  166 (222)
                            ....+...+....       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  1112344555554       4679999999999998866

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=7.2e-20  Score=160.88  Aligned_cols=154  Identities=17%  Similarity=0.104  Sum_probs=102.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CCCcceeeEEEEEEECC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-------------------------------KPTIGVEFAYRNIRVGD   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   58 (222)
                      ...++|+++|++++|||||+++|++.......                               .+.++.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            34789999999999999999999865322111                               12333444444444444


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHHcCCC-CeEEEEEeCCCCCCCCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---FENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~-~p~ivv~nK~Dl~~~~~  134 (222)
                        ..+.||||||++.|...+..++..+|++|+|+|++++..   +.....+...+......+ .|++||+||+|+.+...
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence              578999999999999999999999999999999987531   101111222222222222 45899999999976322


Q ss_pred             CCHH----HHHHHHHHc-----CCeEEEEccccCCCHHHH
Q 027503          135 VNEE----EGKILAETE-----GLYFMETSAMQNLNVEDA  165 (222)
Q Consensus       135 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~  165 (222)
                      ...+    ....+....     +++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2222    223333333     368999999999999876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=1.4e-21  Score=167.36  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=107.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.++|+++|++++|||||+++|.+..+.....++.+.+.....+..++  ..+.||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987665444434444443333333344  36899999999999999999999999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC--CCCHHH--HHHHHHHcC--CeEEEEccccCC
Q 027503           90 LVYDITRR---ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR--EVNEEE--GKILAETEG--LYFMETSAMQNL  160 (222)
Q Consensus        90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~  160 (222)
                      +|+|++++   ++.+.+    ..+.   ..++|+++++||+|+.+..  .+..+.  ...++..++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999884   333322    2222   2348999999999996421  111110  000112222  689999999999


Q ss_pred             CHHHHHHHHHH
Q 027503          161 NVEDAFLQMIN  171 (222)
Q Consensus       161 gi~~~~~~l~~  171 (222)
                      |++++|+++..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=3.2e-19  Score=163.30  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=106.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      ....++|+++|++++|||||+++|.+..       +...       ...+.++++....+.++.....+.||||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3467999999999999999999998631       0000       0112222222222333334467899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG--  148 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  148 (222)
                      .......+..+|++|+|+|++++... ....|+..+...   ++| ++|++||+|+.+....   ..++...+....+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888899999999999999986432 334455555443   378 7899999999752211   1234455666555  


Q ss_pred             ---CeEEEEccccC--------CCHHHHHHHHHHH
Q 027503          149 ---LYFMETSAMQN--------LNVEDAFLQMINQ  172 (222)
Q Consensus       149 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~  172 (222)
                         ++++++||++|        .|+.++++.|.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence               68999999999        3577777666553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=1.1e-18  Score=133.78  Aligned_cols=156  Identities=16%  Similarity=0.177  Sum_probs=99.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhH
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAITS   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~   79 (222)
                      ....+|+|+|++|||||||+++|.+..+.....++.+.......+.+++   .+.+|||||..          .+.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4567999999999999999999998764333345555444434444433   46899999973          2333333


Q ss_pred             hhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--Ce
Q 027503           80 SYY---RGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEG--LY  150 (222)
Q Consensus        80 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~  150 (222)
                      .++   ..++++++++|+.++.++..  +..|+   ..   .++|+++|+||+|+......  ....+..++...+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            444   57899999999998755432  22232   22   34899999999998653211  1234445555544  56


Q ss_pred             EEEEccccCCCHHHHHHHHHHHHH
Q 027503          151 FMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       151 ~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ++++|++++.|++++++.|.+.+.
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHh
Confidence            899999999999999998877653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=3.6e-18  Score=135.71  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc-----
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR-----   83 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----   83 (222)
                      ...++|+|+|.+|+|||||+++|++..+.. ...+..+.......+..++  ..+.+|||||++.+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            367999999999999999999999987532 2233334445555566666  47899999998776554443332     


Q ss_pred             ----CCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCCCCCCCC
Q 027503           84 ----GALGALLVYDITRRATFEN-TKKWLRELREFCSSC--MAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        84 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~~  135 (222)
                          .+|++++|++++... +.. ...|+..+.......  .|+++|+||+|+...+..
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence                789999999998754 333 245777776654432  499999999999654433

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.77  E-value=2.3e-19  Score=153.14  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=102.0

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC-----------------------------CCCCcceeeEEEEEEECC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLD-----------------------------SKPTIGVEFAYRNIRVGD   58 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (222)
                      ...++|+++|++++|||||+++|++.  .+...                             .....+.+.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            36799999999999999999999864  11100                             012223333333444443


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCCCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFE---NTKKWLRELREFCSSCMA-IVLVGNKSDLTH  131 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~  131 (222)
                        ..+.||||||++.|...+..++..+|++|+|+|++++.   +|+   ....++..+..   .++| ++||+||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence              57999999999999988999999999999999999763   221   22223332322   2355 899999999973


Q ss_pred             CCC----CCHHHHHHHHHHcC-----CeEEEEccccCCCHHHH
Q 027503          132 SRE----VNEEEGKILAETEG-----LYFMETSAMQNLNVEDA  165 (222)
Q Consensus       132 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  165 (222)
                      ...    ...++...++...+     ++++++||++|.|+.+.
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            211    11123445555554     68999999999999754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=4.1e-18  Score=151.96  Aligned_cols=165  Identities=16%  Similarity=0.228  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcce------------ee----------------------------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGV------------EF----------------------------   49 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~------------~~----------------------------   49 (222)
                      ..++|+|+|.+|+|||||+|+|++..+.+.. .|+...            ..                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999998764433 233210            00                            


Q ss_pred             -------------EEEEEEECCeE--EEEEEEeCCChhh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027503           50 -------------AYRNIRVGDKL--IKAQIWDTAGQER---FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR  111 (222)
Q Consensus        50 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  111 (222)
                                   ....+......  ..+.||||||...   ....+..+++.+|++|+|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111000  2589999999665   34566788899999999999998877777665544443


Q ss_pred             HHcCCCCeEEEEEeCCCCCCCCCCCHH---H-------HHH-----HHHH--------cCCeEEEEccc-----------
Q 027503          112 EFCSSCMAIVLVGNKSDLTHSREVNEE---E-------GKI-----LAET--------EGLYFMETSAM-----------  157 (222)
Q Consensus       112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~~-----~~~~--------~~~~~~~~Sa~-----------  157 (222)
                         ..+.|+++|+||+|+.....++.+   .       ...     +...        ...+++++||+           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               235789999999998653311111   0       111     1111        12469999999           


Q ss_pred             ---cCCCHHHHHHHHHHHHHHhhh
Q 027503          158 ---QNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       158 ---~~~gi~~~~~~l~~~i~~~~~  178 (222)
                         ++.|+.++++.+.+.+...+.
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~~~  328 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRERA  328 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred             hhhhccCHHHHHHHHHHHHHHhHH
Confidence               999999999999988765543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.76  E-value=5.3e-18  Score=150.62  Aligned_cols=116  Identities=12%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------CCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSK------------------PTIGVEFAYRNIRVGDKLIKAQIWDTAG   70 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   70 (222)
                      .+...+|+|+|+.|+|||||+++|++........                  ...+.......+...  .+.+.+|||||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence            4567899999999999999999998533211100                  111222222333333  36889999999


Q ss_pred             hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +..+...+..++..+|++++|+|+.+...... ..++..+...   ++|+++|+||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            99998889999999999999999987654333 3344444432   48999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=6.7e-19  Score=146.04  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=107.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee---eE-------------------------------------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE---FA-------------------------------------   50 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~---~~-------------------------------------   50 (222)
                      ...+|+|+|++|||||||+++|.+..+.+......+..   ..                                     
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            45599999999999999999999987743332222100   00                                     


Q ss_pred             --------------EEEEEECCeEEEEEEEeCCChhhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHH
Q 027503           51 --------------YRNIRVGDKLIKAQIWDTAGQERF-------------RAITSSYYRGALGALLVYDITRRATFENT  103 (222)
Q Consensus        51 --------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~  103 (222)
                                    ...+.... ...+.+|||||...+             ..+...++.++|++|++++..+.....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                          00011111 135899999997765             567788999999999999875433211  


Q ss_pred             HHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503          104 KKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       104 ~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ..|+..+......+.|+++|+||+|+.+......+....+....+.+|+.+++.++.++.+.+..+..
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            34555556666667899999999999875554444444445556788999999999888876655433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=1.6e-17  Score=148.10  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCc--C------CCC----------CCCCcceeeEEEEEEECCeEEE
Q 027503            1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDE--F------RLD----------SKPTIGVEFAYRNIRVGDKLIK   62 (222)
Q Consensus         1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~   62 (222)
                      |+..-..+.+...+|+|+|++|+|||||+++|+...  +      ...          .....++......+...+  ..
T Consensus         1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~   78 (691)
T 1dar_A            1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HR   78 (691)
T ss_dssp             CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EE
T ss_pred             CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eE
Confidence            444334455788999999999999999999998421  1      000          011122222233344444  67


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      +.||||||+..|...+..++..+|++|+|+|++++..+.....|.. +..   .++|+++|+||+|+..
T Consensus        79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            8999999999999899999999999999999999877776655543 333   2489999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.75  E-value=4.7e-20  Score=161.62  Aligned_cols=150  Identities=22%  Similarity=0.179  Sum_probs=81.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEEC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRVG   57 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   57 (222)
                      ....++|+|+|++++|||||+++|+....                               .....+.++.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            34678999999999999999999964210                               01112233333333333333


Q ss_pred             CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCCC
Q 027503           58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TF---ENTKKWLRELREFCSSCMA-IVLVGNKSDLT  130 (222)
Q Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~  130 (222)
                        ...+.||||||++.|...+...+..+|++|+|+|++++.   .+   ......+..+...   ++| ++||+||+|+.
T Consensus       254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence              367899999999999888888999999999999998642   11   1112222222222   355 88999999987


Q ss_pred             CCCCCCH----HHHHHHH-HHcCC-----eEEEEccccCCCHH
Q 027503          131 HSREVNE----EEGKILA-ETEGL-----YFMETSAMQNLNVE  163 (222)
Q Consensus       131 ~~~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~  163 (222)
                      +......    .....+. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            5221111    1223333 33343     79999999999998

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=1.4e-17  Score=139.76  Aligned_cols=160  Identities=16%  Similarity=0.138  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hhhcCCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITS---SYYRGAL   86 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~d   86 (222)
                      .|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||...    +..+..   ..+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999988643222223333333334445443 23689999999642    112222   2345799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      .+++++|++ ...+..+..|...+..+..  ...|.++|+||+|+...  ...+.........+++++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 5566677777666655431  23789999999998653  222334444555678999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027503          165 AFLQMINQIHQTT  177 (222)
Q Consensus       165 ~~~~l~~~i~~~~  177 (222)
                      ++++|.+.+.+..
T Consensus       315 L~~~i~~~l~~~~  327 (416)
T 1udx_A          315 LKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=1.2e-17  Score=133.18  Aligned_cols=122  Identities=14%  Similarity=0.096  Sum_probs=82.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH-------hh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS-------SY   81 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~   81 (222)
                      ...++|+++|.+|+|||||+|+|++..+.... .+..+.......+...+  ..+.+|||||...+..+..       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999988763222 22222333333444444  6789999999865542211       12


Q ss_pred             --hcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCCCCCCC
Q 027503           82 --YRGALGALLVYDITRRATFEN-TKKWLRELREFCSSC--MAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        82 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~  134 (222)
                        ...+|++++|+|++.. ++.. ...|+..+......+  .|+++|+||+|+.....
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence              3479999999998763 2332 245777776554332  69999999999975443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=8.4e-19  Score=141.95  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC-cCCCCCC--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD-EFRLDSK--------PTIGVEFAYRNIRVGDKLIKAQIWDTAGQ-------E   72 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~   72 (222)
                      ....++|+|+|+.|+|||||+++|.+. .++....        ++.........+...+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            356789999999999999999998875 4433221        11111111122223444568999999997       4


Q ss_pred             hhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           73 RFRAITS-------SYYRG-------------ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        73 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      .+..+..       .++..             +++++++.+.+.. +++.+.  ...+.... .+.|+++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence            4444443       33332             3445555554321 233222  12333333 34799999999999754


Q ss_pred             CCC--CHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          133 REV--NEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      +++  ..+.+..++..++++++++||+++ |++++|..+.+.+.+
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            332  235667888889999999999999 999999999888753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.73  E-value=1.6e-17  Score=135.11  Aligned_cols=163  Identities=13%  Similarity=0.113  Sum_probs=97.3

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce-----eeEE--------------------------------
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV-----EFAY--------------------------------   51 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~-----~~~~--------------------------------   51 (222)
                      ....++|+|+|.+|||||||+|+|++..+.+......+.     ....                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            345789999999999999999999998763222100000     0000                                


Q ss_pred             ----------------------EEEEECCeEEEEEEEeCCChhh-------------hhhhhHhhhcCCcEEEEEEeCCC
Q 027503           52 ----------------------RNIRVGDKLIKAQIWDTAGQER-------------FRAITSSYYRGALGALLVYDITR   96 (222)
Q Consensus        52 ----------------------~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~   96 (222)
                                            ..+... ....+.+|||||...             +......++..+|++++|+|..+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence                                  000111 113689999999643             45667788999999999999743


Q ss_pred             hh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc---cc---CCCHHHHHHHH
Q 027503           97 RA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA---MQ---NLNVEDAFLQM  169 (222)
Q Consensus        97 ~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~gi~~~~~~l  169 (222)
                      .. .......+   +......+.|+++|+||+|+.+......+.........+..++++++   .+   +.|+.++++.+
T Consensus       180 ~~~~~~~~~~i---~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          180 TDLANSDALQL---AKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             SCSTTCSHHHH---HHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             cchhhhHHHHH---HHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence            22 11111122   22333456899999999999764432222222100112245666554   45   78999999887


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      .+.+..
T Consensus       257 ~~~~~~  262 (315)
T 1jwy_B          257 ILYFKN  262 (315)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            776643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.72  E-value=2.1e-16  Score=136.74  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CCCccee--eEEEEEEECCeEEEEEEEe
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------------KPTIGVE--FAYRNIRVGDKLIKAQIWD   67 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~l~D   67 (222)
                      ...++|+|+|++|+|||||+++|+........                    ....+.+  .....+...+  ..+.|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            46789999999999999999999863211000                    0011111  1222333444  6789999


Q ss_pred             CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |||+..|...+..++..+|++|+|+|++++..... ..++..   ....++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~---~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEV---TRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHH---HTTTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHH---HHHcCCCEEEEEcCcCCcc
Confidence            99999998888899999999999999998643222 222222   2334589999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=5.2e-18  Score=137.35  Aligned_cols=134  Identities=18%  Similarity=0.132  Sum_probs=109.0

Q ss_pred             HHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHH
Q 027503           27 NLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA-TFENTK  104 (222)
Q Consensus        27 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  104 (222)
                      +|+.++..+.|. ..+.||++..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888888 788899985544 3332233   6899999  8899999999999999999999999987 788888


Q ss_pred             HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccccCCCHHHHHHHHHH
Q 027503          105 KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       105 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      .|+..+..   .++|++||+||+|+.+.+.+  ++...++..++  ++++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887765   35899999999999754332  44666777776  89999999999999999987754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.71  E-value=4.8e-16  Score=138.76  Aligned_cols=121  Identities=16%  Similarity=0.057  Sum_probs=84.5

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC-----------C-----CCCcceeeEEEEEEEC-----CeEEEE
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE--FRLD-----------S-----KPTIGVEFAYRNIRVG-----DKLIKA   63 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~   63 (222)
                      .+.+...+|+|+|+.|+|||||+++|+...  +...           .     ....++......+.+.     +..+.+
T Consensus         5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i   84 (704)
T 2rdo_7            5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI   84 (704)
T ss_pred             CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence            345678999999999999999999997531  1100           0     0111222222223322     233789


Q ss_pred             EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      .||||||+..|...+..++..+|++|+|+|+++.........|. .+.   ..++|+++|+||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence            99999999999888999999999999999999876555444443 232   23489999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.70  E-value=1.6e-17  Score=139.63  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=81.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------   74 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------   74 (222)
                      ...++|+|+|++|||||||++.|.+..+....        .++.........+...+....+++||++|....       
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            46788999999999999999999987763221        111211111112222344457899999997543       


Q ss_pred             hh------------------hhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           75 RA------------------ITSSYYRGALGALLVYDITRR-ATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        75 ~~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..                  +...++.++++.+++|..... .++..+. .|+..+.    .++|+++|+||+|+...+.
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence            11                  112344455543344433321 2333332 4555543    2589999999999876544


Q ss_pred             CCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503          135 VNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      +..  ..+..++...+++++++|+.++.++.++|..+..
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            443  4566777788999999999999999988776654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=2e-17  Score=138.50  Aligned_cols=85  Identities=22%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN--IR-------------------VGD-KLIKAQIWDTAG   70 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~l~Dt~G   70 (222)
                      ++|+|+|.+|||||||+|+|.+........|..+.+.....  +.                   +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987633233333333222221  11                   122 246899999999


Q ss_pred             hhh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 027503           71 QER----FRAITS---SYYRGALGALLVYDITRR   97 (222)
Q Consensus        71 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   97 (222)
                      ...    ...+..   .+++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222332   457899999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=4.6e-16  Score=138.72  Aligned_cols=118  Identities=17%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------CC-----CCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARD--EFRL-----------DS-----KPTIGVEFAYRNIRVGDKLIKAQIWDTA   69 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   69 (222)
                      +.+...+|+|+|++|+|||||+++|+..  .+..           .+     .+..+.......+...+  ..+.|||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence            3467899999999999999999999852  2110           00     11122222233444444  678999999


Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |+..+...+..+++.+|++|+|+|++++.+......|.. +...   ++|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            999998889999999999999999999877666555543 3332   489999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=6e-18  Score=139.93  Aligned_cols=159  Identities=17%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCc----------------------c---------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTI----------------------G---------------   46 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~----------------------~---------------   46 (222)
                      ...++|+|+|.+|||||||+|+|.+..+.+..      .|+.                      +               
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999998874222      1220                      0               


Q ss_pred             ------eeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcE-EEEEEeCCChhhHHHHHH
Q 027503           47 ------VEFAYRNIRVG-DKLIKAQIWDTAGQE-------------RFRAITSSYYRGALG-ALLVYDITRRATFENTKK  105 (222)
Q Consensus        47 ------~~~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~  105 (222)
                            +......+.+. .....+.||||||..             .+..+...++..++. +++|++.+....-.   .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence                  00000011111 012468999999953             345566777766654 44556665432211   2


Q ss_pred             HHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH--HHHHcC-CeEEEEccccCCCHHHHHHHHHH
Q 027503          106 WLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI--LAETEG-LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       106 ~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      |+..+......+.|+++|+||+|+.+...........  +....+ .+++.+||+++.|+.++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3334444555668999999999997643311111110  000122 35788999999999999988876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=1.9e-16  Score=122.18  Aligned_cols=155  Identities=14%  Similarity=0.053  Sum_probs=94.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee--------------eEEEEEEEC----------------CeE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE--------------FAYRNIRVG----------------DKL   60 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~   60 (222)
                      ...+|+|+|.+|||||||+++|...............+              .....+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45789999999999999999998753221110000000              001111110                012


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      ..+.+|||+|.-..   ...+....+.+++|+|+.+....  ...+...   .   +.|+++|+||+|+.+......+..
T Consensus       109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            46789999884110   01111356889999998765321  1111111   1   278899999999864322345555


Q ss_pred             HHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          141 KILAETE--GLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       141 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ..+....  +++++++||++|.|+.++|+++.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            5555543  47899999999999999999998877543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.63  E-value=5e-15  Score=121.97  Aligned_cols=147  Identities=16%  Similarity=0.140  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhhhh-
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQERFR-   75 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-   75 (222)
                      .++|+|+|.+|||||||+|+|.+..+.....|..+.+.....+.+++.               +..+.+|||||..... 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999987744333333333322223444442               1478999999987542 


Q ss_pred             ---hh---hHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q 027503           76 ---AI---TSSYYRGALGALLVYDITRR----------ATFENTKKWLREL-----------------------------  110 (222)
Q Consensus        76 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l-----------------------------  110 (222)
                         .+   ...+++.+|++++|+|+.+.          +.+.++..+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               22   23457899999999999862          2233322211111                             


Q ss_pred             -----------HH-------------------H-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503          111 -----------RE-------------------F-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ  158 (222)
Q Consensus       111 -----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (222)
                                 ..                   + ....+|+++++|+.|..-......+..+.++...+.+++++||+.
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                       00                   0 112489999999998642222234556778888899999999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=6.7e-18  Score=130.86  Aligned_cols=154  Identities=13%  Similarity=0.064  Sum_probs=90.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE------------EEEEEEC-CeE-----------------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA------------YRNIRVG-DKL-----------------   60 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   60 (222)
                      ..++|+|+|.+|||||||+++|....+...+.++...+..            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987655433333332221            1111111 100                 


Q ss_pred             --EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH
Q 027503           61 --IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE  138 (222)
Q Consensus        61 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  138 (222)
                        ..+.++|++|.-..   ...+-...+..+.++|.........  .....   .   ..|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence              13444555542100   0011112344555666432211110  00011   1   2678999999998654334556


Q ss_pred             HHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          139 EGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       139 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ....++...  +++++++||++|.|+.++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            666666654  5789999999999999999999887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.61  E-value=5.3e-15  Score=128.51  Aligned_cols=116  Identities=18%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc------------------C----CCCCCCCcceeeEEEEEEECCeEEEEEEEe
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE------------------F----RLDSKPTIGVEFAYRNIRVGDKLIKAQIWD   67 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   67 (222)
                      .+.-+|+|+|+.++|||||..+|+...                  +    .......+++......+.+.+  ..+.|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            456789999999999999999986211                  0    011122233333344455555  6789999


Q ss_pred             CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      |||+..|..-....++-+|++|+|+|+..+-......-| ..+..+   ++|.++++||+|...
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence            999999999999999999999999999987654554445 333333   389999999999754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.60  E-value=1e-15  Score=133.17  Aligned_cols=126  Identities=19%  Similarity=0.219  Sum_probs=84.6

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEE----------------------EEE--
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRN----------------------IRV--   56 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~~--   56 (222)
                      +.+.+.+..++|+|+|.+|+|||||+|+|++..+.   ....++.........                      +..  
T Consensus        57 l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g  136 (550)
T 2qpt_A           57 LEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG  136 (550)
T ss_dssp             CCSTTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC-----------------
T ss_pred             cccccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhc
Confidence            33455667899999999999999999999998864   222333211100000                      000  


Q ss_pred             ----CCeE---------EEEEEEeCCChhh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q 027503           57 ----GDKL---------IKAQIWDTAGQER-----------FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE  112 (222)
Q Consensus        57 ----~~~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~  112 (222)
                          ++..         ..+.||||||...           +...+..++..+|++|+|+|+++.........|+..+. 
T Consensus       137 ~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-  215 (550)
T 2qpt_A          137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-  215 (550)
T ss_dssp             -CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-
T ss_pred             ccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-
Confidence                0000         2588999999764           45667788999999999999987544444455555443 


Q ss_pred             HcCCCCeEEEEEeCCCCCCC
Q 027503          113 FCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus       113 ~~~~~~p~ivv~nK~Dl~~~  132 (222)
                        ..+.|+++|+||+|+...
T Consensus       216 --~~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          216 --GHEDKIRVVLNKADMVET  233 (550)
T ss_dssp             --TCGGGEEEEEECGGGSCH
T ss_pred             --hcCCCEEEEEECCCccCH
Confidence              334899999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=7e-16  Score=127.61  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=69.6

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      +.+.||||||...   .....+..+|++++|+|....+.+..+..        .....|+++|+||+|+...... ....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~-~~~~  239 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEA-RLAA  239 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHH-HHHH
Confidence            5789999999432   23344589999999999876544322221        0112689999999998642221 1111


Q ss_pred             HHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          141 KILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       141 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ..+...          ++.+++.+||++|.|+++++++|.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222221          25789999999999999999999888755

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.56  E-value=7.9e-15  Score=133.26  Aligned_cols=118  Identities=18%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCCCcceeeEE--EEEE------------ECC
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------------SKPTIGVEFAY--RNIR------------VGD   58 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~--~~~~------------~~~   58 (222)
                      .+...+|+|+|++++|||||+++|+.......                ..+..++....  ..+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            35678999999999999999999986421100                01111221111  2222            133


Q ss_pred             eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      ..+.+.||||||+..|...+..+++.+|++|+|+|++++.++.....|.....    .++|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            46789999999999999999999999999999999999888777665654332    348999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=2.4e-14  Score=118.46  Aligned_cols=156  Identities=17%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-------------------KLIKAQIWDTAGQER   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   73 (222)
                      ++|+|+|.+|||||||+|+|.+........+..+.........+.+                   .+..+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998653222223222222222222221                   235789999999765


Q ss_pred             hh-------hhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 027503           74 FR-------AITSSYYRGALGALLVYDITRR----------ATFENTKKWLREL--------------------------  110 (222)
Q Consensus        74 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l--------------------------  110 (222)
                      ..       ......++.+|++++|+|+.+.          ..+.++..+...+                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       1233457899999999999851          1122211110000                          


Q ss_pred             ---------H----H-------------------Hc-CCCCeEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEEEE
Q 027503          111 ---------R----E-------------------FC-SSCMAIVLVGNKSDL--THS-REVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus       111 ---------~----~-------------------~~-~~~~p~ivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                               .    .                   +. ...+|+++++||.|.  .+. +....+..+.++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                     0    0                   00 123799999999973  221 1233456677888888999999


Q ss_pred             ccccCCCHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQ  168 (222)
Q Consensus       155 Sa~~~~gi~~~~~~  168 (222)
                      ||+.+.++.++.+.
T Consensus       242 SAk~E~el~eL~~~  255 (368)
T 2dby_A          242 SARLEAELAELSGE  255 (368)
T ss_dssp             CHHHHHHHHTSCHH
T ss_pred             echhHHHHHHhchH
Confidence            99987777665543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.5e-13  Score=113.73  Aligned_cols=157  Identities=16%  Similarity=0.089  Sum_probs=105.9

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhh
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAIT   78 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~   78 (222)
                      +-.++...+|+|+|.||||||||+|+|.+........|..+.+.....+.+.+  ..+.++||||...-       ....
T Consensus        66 ~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~  143 (376)
T 4a9a_A           66 DVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQV  143 (376)
T ss_dssp             TBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHH
T ss_pred             eEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHH
Confidence            34566788999999999999999999998776666667788888888888888  56899999995421       1223


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcC
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTH--------SREVNEEEGKILAETEG  148 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~  148 (222)
                      ...++.+|++++|+|+.+|..  +.......+....  -.+.|.++++||.|...        ......++.+.+...+.
T Consensus       144 l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          144 IAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             HHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred             HHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence            456789999999999998742  2222223333322  23468888999999742        23345666666666655


Q ss_pred             CeEEEEccccCCCHHHHH
Q 027503          149 LYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       149 ~~~~~~Sa~~~~gi~~~~  166 (222)
                      +.--++-...+...+++.
T Consensus       222 lt~kpv~~~~nv~eddl~  239 (376)
T 4a9a_A          222 INSAEIAFRCDATVDDLI  239 (376)
T ss_dssp             CCSEEEEECSCCCHHHHH
T ss_pred             ccCCCeeecccCCHHHHH
Confidence            432223233444555544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.51  E-value=5.5e-15  Score=121.88  Aligned_cols=102  Identities=12%  Similarity=-0.014  Sum_probs=62.3

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      +.+.++||+|....   .......+|++++|+|+.++.....+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46789999995321   2344678999999999987643222111   11     13688999999998532110 0111


Q ss_pred             HHHHH----------HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          141 KILAE----------TEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       141 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ..+..          .++.+++.+||++|.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            22211          12457899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=6.8e-14  Score=124.69  Aligned_cols=158  Identities=15%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce------------------------------------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV------------------------------------------   47 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~------------------------------------------   47 (222)
                      -..++|+|+|.+++|||||+|+|++..+.+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45779999999999999999999998763222111100                                          


Q ss_pred             -------e--eEEEEEEECCeEEEEEEEeCCChhh-------------hhhhhHhhh-cCCcEEEEEEeCCChhhHHHHH
Q 027503           48 -------E--FAYRNIRVGDKLIKAQIWDTAGQER-------------FRAITSSYY-RGALGALLVYDITRRATFENTK  104 (222)
Q Consensus        48 -------~--~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  104 (222)
                             .  .....+...+. ..+.|+||||...             +..+...++ ..+|++++|+|+++.....+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                   0  00111111111 2578999999433             233444554 5789999999998754333322


Q ss_pred             HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-H-HHHcC-CeEEEEccccCCCHHHHHHHHHH
Q 027503          105 KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI-L-AETEG-LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       105 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      .+   +......+.|+++|+||+|+.+........... . ....+ .+++.+||++|.|++++++.+.+
T Consensus       208 ~l---l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          208 KI---AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HH---HHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HH---HHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            22   333444568999999999998644432221110 0 00012 35788999999999999988876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.47  E-value=2.6e-13  Score=107.23  Aligned_cols=111  Identities=14%  Similarity=-0.077  Sum_probs=66.9

Q ss_pred             EEEEEEeCCChhhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITS------SYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      +.+.+|||||.........      ..+.. +++++++|.....+........ .........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4689999999876543221      23455 8888888875432222221111 11111112238999999999986532


Q ss_pred             CCCHHHHHH----------------------------HHHHcC--CeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          134 EVNEEEGKI----------------------------LAETEG--LYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       134 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ..  +....                            ++...+  .+++++||+++.|++++++++.+.+.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            11  11111                            022333  47999999999999999999987664

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.46  E-value=2.2e-14  Score=118.01  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=64.5

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--E  138 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~  138 (222)
                      +.+.||||||......   .....+|++++|+|++.+..+..+..   ..  .   +.|.++|+||+|+.+......  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCChHHHHHHHH
Confidence            4789999999654332   24689999999999976543221111   11  1   267899999999864221111  0


Q ss_pred             HHHHHHHHc-------CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          139 EGKILAETE-------GLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       139 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      .........       ..+++++||++|.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111111111       457899999999999999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.46  E-value=1.5e-14  Score=127.95  Aligned_cols=116  Identities=17%  Similarity=0.194  Sum_probs=80.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc--CC----CCC----CCC------cceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE--FR----LDS----KPT------IGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~--~~----~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      .-||+|+|+.++|||||..+|+...  ..    ...    ...      .++++....+.+......+.|+||||+..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            3579999999999999999986311  10    000    000      1233333333333344678999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      ......++-+|++|+|+|+..+-......-| ..+..+.   +|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~---lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG---IPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT---CSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC---CCeEEEEecccccc
Confidence            9999999999999999999987543443334 3344443   88899999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.45  E-value=1.8e-12  Score=116.02  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhC--------cCCC----------CCCCCcceeeEEEEEEEC-----CeEEEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARD--------EFRL----------DSKPTIGVEFAYRNIRVG-----DKLIKAQI   65 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~l   65 (222)
                      -+..-+|+|+|+.++|||||..+|+..        ....          .....+++......+.+.     ...+.+.|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            366788999999999999999998621        1110          111112222222233332     12468999


Q ss_pred             EeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +||||+..|..-....++-+|++|+|+|+..+-......-|.+... ..   +|.++++||+|..
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~~---lp~i~~iNKiDr~  150 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-YG---VPRIVYVNKMDRQ  150 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-HT---CCEEEEEECSSST
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEcccccc
Confidence            9999999999999999999999999999998765454444544433 33   8999999999975

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=4.7e-13  Score=108.20  Aligned_cols=98  Identities=15%  Similarity=0.055  Sum_probs=79.2

Q ss_pred             hhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027503           71 QERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-EEEGKILAETEG  148 (222)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  148 (222)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .+....+....+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667778888999999999999999986 88888889887665   348999999999997543222 344456666778


Q ss_pred             CeEEEEccccCCCHHHHHHHHHH
Q 027503          149 LYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus       149 ~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ++++++||++|.|++++++.+..
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHhhccC
Confidence            99999999999999999987643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.36  E-value=2.3e-12  Score=105.65  Aligned_cols=103  Identities=11%  Similarity=0.045  Sum_probs=63.3

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      ..+.|+||+|...-.   ......+|++++++|...+.....+..   .+..     .|.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~~-----~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHhc-----cccEEEEEchhccCchhHHHHHH
Confidence            478999999965321   233578999999999865432211111   1111     35577789999754222222223


Q ss_pred             HHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          141 KILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       141 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      +.+...          ++.+++.+|+.++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333321          1457899999999999999998887654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.29  E-value=1.1e-10  Score=97.17  Aligned_cols=87  Identities=17%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER   73 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   73 (222)
                      ....+|+|+|++|||||||+|.|.+... .....|+.+.+.....+.+.+.               +..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457899999999999999999999776 4555566666655566666541               13579999999542


Q ss_pred             -------hhhhhHhhhcCCcEEEEEEeCCC
Q 027503           74 -------FRAITSSYYRGALGALLVYDITR   96 (222)
Q Consensus        74 -------~~~~~~~~~~~~d~~i~v~d~~~   96 (222)
                             +.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   23345566789999999999863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.26  E-value=3.6e-12  Score=96.32  Aligned_cols=102  Identities=8%  Similarity=-0.026  Sum_probs=69.0

Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH----c-CCCCeEEEEEeCC-CCCCCCCCCHHHHHHH
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF----C-SSCMAIVLVGNKS-DLTHSREVNEEEGKIL  143 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~  143 (222)
                      |++.++.+|..|+.++|++|||+|.+|.+.++ ....+..+...    . ..+.|++|++||. |+.  ...+..+..+.
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~  187 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE  187 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence            78889999999999999999999999875443 33333233221    1 1468999999996 664  34444444333


Q ss_pred             HH----HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503          144 AE----TEGLYFMETSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       144 ~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ..    .+.+.+..|||.+|+|+.+.++||.+.+.
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            21    24467999999999999999999987664

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.25  E-value=5.5e-12  Score=104.84  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQERF   74 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   74 (222)
                      ...++|+|+|.+|||||||+|+|.+..+.....|+.+.+.....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34678999999999999999999988765555555555555555555442               235899999997754


Q ss_pred             hh-------hhHhhhcCCcEEEEEEeCCCh
Q 027503           75 RA-------ITSSYYRGALGALLVYDITRR   97 (222)
Q Consensus        75 ~~-------~~~~~~~~~d~~i~v~d~~~~   97 (222)
                      ..       .+..+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            32       456788999999999998754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.14  E-value=7.5e-11  Score=93.29  Aligned_cols=104  Identities=7%  Similarity=-0.065  Sum_probs=73.5

Q ss_pred             CChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH----HHHHHH-cCCCCeEEEEEeC-CCCCCCCCCCHHHHHH
Q 027503           69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL----RELREF-CSSCMAIVLVGNK-SDLTHSREVNEEEGKI  142 (222)
Q Consensus        69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~----~~l~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~  142 (222)
                      +|++..+.+|..|+.++|++|+|+|.+|.+.++ ....+    ..+.+. ...+.|++|++|| .|+.  ...+..+..+
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e  271 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  271 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence            467889999999999999999999999987543 22222    223222 1246899999997 5774  3444444433


Q ss_pred             HHH----HcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          143 LAE----TEGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       143 ~~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ...    .+...+..|||.+|+|+.+.++||.+.+..
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            221    234679999999999999999999987643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=4.2e-11  Score=99.35  Aligned_cols=140  Identities=15%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC------cCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD------EFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AIT   78 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~   78 (222)
                      .+|+++|.+|+|||||+|+|++.      .......+..  +.....+.++.   .+.++||||.....        ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT--TLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS--SCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe--EEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999976      2212222333  33333444443   36899999954221        111


Q ss_pred             Hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503           79 SSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus        79 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      ..++  ...++++++++......+..+..    +......+.|+++++||+|..+.... ......+.+..+..+...++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            2222  67799999998743211111110    22223456899999999998764332 33445566667766666665


Q ss_pred             ccCCCH
Q 027503          157 MQNLNV  162 (222)
Q Consensus       157 ~~~~gi  162 (222)
                      .+..++
T Consensus       313 ~~~~~~  318 (369)
T 3ec1_A          313 RYAAEF  318 (369)
T ss_dssp             GGTTTC
T ss_pred             hhhhhc
Confidence            554443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.95  E-value=3.2e-09  Score=87.98  Aligned_cols=96  Identities=23%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AE  145 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~  145 (222)
                      ..+.|..+...+.+.+|++++|+|+.++.     ..|...+.++.. +.|+++|+||+|+.... ...+....+    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788899999999999999999999863     346566666544 48999999999997533 333333333    55


Q ss_pred             HcCC---eEEEEccccCCCHHHHHHHHHHH
Q 027503          146 TEGL---YFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       146 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ..++   +++.+||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999888654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=3.1e-09  Score=89.15  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC--CcceeeEEEE--EEECCeEEEEEEEeCCChhhh-------------
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP--TIGVEFAYRN--IRVGDKLIKAQIWDTAGQERF-------------   74 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~-------------   74 (222)
                      .++++|+|++|+|||||++.|.+..+......  ..+.......  ....+....++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999998754322111  1111111111  222233347899999974311             


Q ss_pred             -----hhhhHhh---------hcCC--cE-EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           75 -----RAITSSY---------YRGA--LG-ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        75 -----~~~~~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                           ......+         ..++  |+ ++++.|...+-+..++    ..+.... .++|+|+|+||+|...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L~-~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKLD-SKVNIIPIIAKADAIS  190 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHTC-SCSEEEEEESCGGGSC
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHHh-hCCCEEEEEcchhccc
Confidence                 0111111         1122  33 5556666544333332    2222222 5689999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.89  E-value=5.1e-11  Score=98.79  Aligned_cols=136  Identities=12%  Similarity=0.156  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-----CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----h----hH
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-----DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----I----TS   79 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~----~~   79 (222)
                      .+|+++|.+|+|||||+|+|++.....     ...+..+.+.....+.+.+.   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999863211     01122223333334444432   78999999643221    1    11


Q ss_pred             hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503           80 SY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus        80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      .+  ....+.++++++.........+.    .+......+.|+++++||+|..+... .......+.+..+..+...++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence            11  35678888888874321111111    02222345689999999999876333 233444555666655544444

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.85  E-value=1.4e-09  Score=93.31  Aligned_cols=152  Identities=12%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHh------hCcCCC----CCCCCc-----------ceeeEEEEEE-------------
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFA------RDEFRL----DSKPTI-----------GVEFAYRNIR-------------   55 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~------~~~~~~----~~~~~~-----------~~~~~~~~~~-------------   55 (222)
                      .....|+|+|.+||||||+++.|.      +..+..    .+.+..           ++.+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346689999999999999999988      332110    001100           0111110000             


Q ss_pred             ECCeEEEEEEEeCCChhhhh-hhhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCC
Q 027503           56 VGDKLIKAQIWDTAGQERFR-AITS---SY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSD  128 (222)
Q Consensus        56 ~~~~~~~~~l~Dt~G~~~~~-~~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D  128 (222)
                      .....+.+.|+||||..... .+..   ..  ...+|.+++|+|+........   ....+...    +|+ .+|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCc
Confidence            00012478999999965321 1111   11  237899999999987643211   22223322    564 78899999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeE------------------EEEccccCCC-HHHHHHHHHHH
Q 027503          129 LTHSREVNEEEGKILAETEGLYF------------------METSAMQNLN-VEDAFLQMINQ  172 (222)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~  172 (222)
                      ......  .  +.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g--~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG--G--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT--H--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH--H--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            864221  1  222333444443                  3368888998 98888888765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.83  E-value=5.8e-09  Score=82.80  Aligned_cols=137  Identities=19%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------C-CcceeeEEEEEEE--CCeEEEEEEEeCCChhh-------hh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSK------P-TIGVEFAYRNIRV--GDKLIKAQIWDTAGQER-------FR   75 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~------~-~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~-------~~   75 (222)
                      .++++|+|+.|+|||||+|.|.+...+....      + ..........+..  .+....++++|++|...       +.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            6899999999999999999998754322110      0 0000001111111  12223679999998321       00


Q ss_pred             h-----------h----------hHhhhcCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           76 A-----------I----------TSSYYRGALGALLVYDIT-RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        76 ~-----------~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      .           .          ....+..+++.++++|.. .+-.-.+    ...+...... .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCCHH
Confidence            0           0          011233468888888854 3322222    2223333333 8999999999987533


Q ss_pred             CCCH--HHHHHHHHHcCCeEEE
Q 027503          134 EVNE--EEGKILAETEGLYFME  153 (222)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~  153 (222)
                      +...  ..........++.++.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            2211  1122234455666553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.79  E-value=1.2e-08  Score=84.63  Aligned_cols=97  Identities=21%  Similarity=0.187  Sum_probs=71.6

Q ss_pred             ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027503           70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AE  145 (222)
Q Consensus        70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~  145 (222)
                      .++.|......++..++++++|+|+.++.+     .|...+..... +.|+++|+||+|+.... ...+....+    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            478889999999999999999999999763     34444444443 48999999999997532 233333333    45


Q ss_pred             HcCC---eEEEEccccCCCHHHHHHHHHHHH
Q 027503          146 TEGL---YFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       146 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ..+.   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   689999999999999998886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.69  E-value=4.6e-08  Score=78.08  Aligned_cols=101  Identities=11%  Similarity=0.037  Sum_probs=69.5

Q ss_pred             EEeCCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 027503           65 IWDTAGQE-RFRAITSSYYRGALGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK  141 (222)
Q Consensus        65 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  141 (222)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..|+        .++|.++|+||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34568865 44456677889999999999999987664  333332        3489999999999975211  12223


Q ss_pred             HHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          142 ILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       142 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      .+....+++++.+||.++.|+.++++.+.+.+.+
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3444567899999999999999999888776654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.63  E-value=7.7e-07  Score=74.55  Aligned_cols=158  Identities=11%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCc-ceee--EEEEEEECCeEEEEEEEeCCChhhhh----h-hhHhhhc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-GVEF--AYRNIRVGDKLIKAQIWDTAGQERFR----A-ITSSYYR   83 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~----~-~~~~~~~   83 (222)
                      ...++|+|++|||||||+|.+.+...+....-.. +.+.  ........ ....++++|++|.....    . +....+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999999843222111111 1110  01111111 11157899999854211    1 1122233


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC-------CCCCCCHHH----HHHHH----HHcC
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT-------HSREVNEEE----GKILA----ETEG  148 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~~  148 (222)
                      ..+.+++ ++...+.. ..+ .+...+..   .+.|+++|.||.|+.       .-.......    .+.+.    ...+
T Consensus       148 ~~~~~~~-lS~G~~~k-qrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK-NDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCCH-HHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCccH-HHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455554 77653211 111 12222222   248999999999864       111112222    22332    1222


Q ss_pred             ---CeEEEEcc--ccCCCHHHHHHHHHHHHHHh
Q 027503          149 ---LYFMETSA--MQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       149 ---~~~~~~Sa--~~~~gi~~~~~~l~~~i~~~  176 (222)
                         ..++.+|+  .++.|++++.+.+.+.+-+.
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence               35788999  55667999988887765433

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.47  E-value=1.3e-07  Score=75.42  Aligned_cols=58  Identities=29%  Similarity=0.497  Sum_probs=36.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ...++|+++|.+|+|||||+|+|.+...... ..+..+...  ..+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence            4568999999999999999999998764322 223222222  2333333   57899999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.42  E-value=8.1e-08  Score=75.85  Aligned_cols=57  Identities=16%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER   73 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (222)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            6999999999999999999998765322 12223322222233332   578999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.37  E-value=5.4e-07  Score=75.91  Aligned_cols=86  Identities=17%  Similarity=0.036  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhhhh-----hhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFR-----AIT-SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +.+.|+||+|.....     .+. ......+|.+++|+|+........   ....+....   .+..||+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCccc--
Confidence            468899999943211     111 122336799999999887543222   222333222   355788999997542  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 027503          135 VNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                        ...+.......++|+..++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23445556677888877764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.32  E-value=5.2e-07  Score=76.10  Aligned_cols=83  Identities=14%  Similarity=0.019  Sum_probs=47.3

Q ss_pred             EEEEEEeCCChhhhhh-----hh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCC-e-EEEEEeCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA-----IT-SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCM-A-IVLVGNKSDLTHS  132 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~Dl~~~  132 (222)
                      ..+.|+||||......     +. ...+..+|.+++|+|+..+..   ....   +...... . | ..+|+||+|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~~-~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKEA-VGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHTT-SCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhhc-ccCCeEEEEeCCCCccc
Confidence            4679999999653211     10 112236899999999876532   2212   2222222 4 5 7888999997431


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEE
Q 027503          133 REVNEEEGKILAETEGLYFMET  154 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~  154 (222)
                          ...+.......+.++..+
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                122334566667665554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.25  E-value=5.3e-07  Score=71.14  Aligned_cols=92  Identities=10%  Similarity=-0.000  Sum_probs=62.0

Q ss_pred             CCChhh-hhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027503           68 TAGQER-FRAITSSYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA  144 (222)
Q Consensus        68 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  144 (222)
                      .||+.. ........+.++|+++.|+|+.++.+...  +. ++         ++|.++|+||+|+.+...  .+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            466542 23456677899999999999999876543  22 21         589999999999975211  12223344


Q ss_pred             HHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503          145 ETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       145 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ...+.++ .+||.++.|+.++++.+...
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            4567888 99999999999988776543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.23  E-value=4.2e-06  Score=73.63  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFR   38 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~   38 (222)
                      .|+|+|+.|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999986543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.18  E-value=1.2e-06  Score=76.50  Aligned_cols=63  Identities=14%  Similarity=0.058  Sum_probs=38.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNI--RV-GDKLIKAQIWDTAGQE   72 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~   72 (222)
                      ...++|+|+|.+|+|||||+|+|++..... ....+.+.+.....+  .+ ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            467899999999999999999999876421 111111111111111  11 1122468999999965

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.13  E-value=9.7e-07  Score=71.09  Aligned_cols=91  Identities=12%  Similarity=0.072  Sum_probs=60.5

Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeE
Q 027503           75 RAITSSYYRGALGALLVYDITRRAT-FENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEGLYF  151 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~  151 (222)
                      ..+.+..+.++|.+++|+|+.+|.. ...+..++....   ..++|.+||+||+|+.+....  ..+....+....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3455567899999999999998753 333444433333   234889999999999764220  0122233344567899


Q ss_pred             EEEccccCCCHHHHHHH
Q 027503          152 METSAMQNLNVEDAFLQ  168 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~  168 (222)
                      +.+|+.++.|++++++.
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999999888766643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.13  E-value=8.8e-07  Score=74.57  Aligned_cols=90  Identities=13%  Similarity=0.018  Sum_probs=53.8

Q ss_pred             EEEEEEeCCChhh--hh-----hhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           61 IKAQIWDTAGQER--FR-----AITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        61 ~~~~l~Dt~G~~~--~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      ..+.++||||...  ..     .+.. ......+.+++|+|+........   ....+....   .+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc-
Confidence            4678999999533  11     1111 11225689999999986543222   223333332   45678899999653 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503          133 REVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                         ....+.......+.|+..++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               233455566667899877775  5554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.03  E-value=9e-06  Score=65.24  Aligned_cols=91  Identities=14%  Similarity=0.060  Sum_probs=55.4

Q ss_pred             EEEEEEeCCChhh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCC
Q 027503           61 IKAQIWDTAGQER--FRA-ITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTH  131 (222)
Q Consensus        61 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~  131 (222)
                      +.+.++||||...  ... +..     .....+|.+++|+|+....   +.......+..    ..| ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4689999999765  221 111     1344789999999987542   22222222322    145 678899999643


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          132 SREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                          ....+.......+.|+..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23345566777888887775  5666643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.93  E-value=3.2e-05  Score=63.46  Aligned_cols=82  Identities=12%  Similarity=0.042  Sum_probs=55.4

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEcc
Q 027503           81 YYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK---ILAETEGLYFMETSA  156 (222)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa  156 (222)
                      ...++|.+++|.+.. |. +...+..++.......   +|++||+||+|+.+...  .+...   ......|++++.+|+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~---~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQ---VEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHT---CEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcC---CCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence            467899999887764 54 3344555554444443   78899999999976321  11122   233456889999999


Q ss_pred             ccCCCHHHHHHH
Q 027503          157 MQNLNVEDAFLQ  168 (222)
Q Consensus       157 ~~~~gi~~~~~~  168 (222)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999987754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.86  E-value=1.2e-06  Score=74.76  Aligned_cols=110  Identities=16%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------H
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--FRAIT--------S   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~   79 (222)
                      ...+.|+++|.+||||||+.++|...... ...++...+.........+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999998754321 1112111110000000011112345789888732  22222        4


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEE
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVG  124 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~  124 (222)
                      .++...++.++|+|.++. +......|+..+....   .+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEE
Confidence            566667888999999987 4555566766666543   4454443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.79  E-value=3.2e-05  Score=62.88  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=51.2

Q ss_pred             EEEEEeCCChhhhhh-----hhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRA-----ITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV  135 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~  135 (222)
                      .+.++|++|......     +.. ...-..|-.++++|.....   ++......+....   -...+++||.|... .  
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a-~--  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA-R--  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS-C--
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc-c--
Confidence            456799999643211     110 1112468889999976553   3333333343332   22367789999532 1  


Q ss_pred             CHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          136 NEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                       .-.+.......+.|+..++  +|+++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence             2334566677788887776  6666543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.59  E-value=0.00034  Score=59.08  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+..-|+|+|++++|||+|+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            35667999999999999999999864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.25  E-value=0.00017  Score=53.31  Aligned_cols=24  Identities=25%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .+++|+|++|||||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999987643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.24  E-value=0.00084  Score=56.57  Aligned_cols=80  Identities=16%  Similarity=0.107  Sum_probs=43.8

Q ss_pred             EEEEEEeCCChhhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFR-AITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSR  133 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~  133 (222)
                      +.+.|+||||..... .+..     ..+..++.+++|+|+......   ......+...    .+ .-||+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence            468999999954331 1111     224478899999998765322   2222223222    33 34688999974322


Q ss_pred             CCCHHHHHHHHHHcCCeE
Q 027503          134 EVNEEEGKILAETEGLYF  151 (222)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (222)
                          ..+.......+.|+
T Consensus       257 ----g~~l~i~~~~~~Pi  270 (433)
T 2xxa_A          257 ----GAALSIRHITGKPI  270 (433)
T ss_dssp             ----THHHHHHHHHCCCE
T ss_pred             ----HHHHHHHHHHCCCe
Confidence                12334445556553

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00023  Score=52.44  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.08  E-value=0.0003  Score=52.78  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++|+|++|||||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.00  E-value=0.00038  Score=52.06  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.99  E-value=0.00015  Score=58.30  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.98  E-value=0.0015  Score=52.40  Aligned_cols=22  Identities=45%  Similarity=0.733  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++++|++|||||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57999999999999999998 44

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.95  E-value=0.00042  Score=51.28  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.91  E-value=0.0005  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999988743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.90  E-value=0.00054  Score=51.66  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .....|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999987643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.89  E-value=0.00045  Score=50.48  Aligned_cols=20  Identities=35%  Similarity=0.512  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027503           14 KAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~   33 (222)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.88  E-value=0.00055  Score=52.27  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999988743

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.87  E-value=0.00056  Score=52.12  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|||||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=0.0006  Score=51.16  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.81  E-value=0.0015  Score=54.83  Aligned_cols=85  Identities=19%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             EEEEEEeCCChhhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA-ITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +.+.|+||||...... +..     ...-.+|.+++|+|.....   ++......+....   ....||+||.|....  
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~~--  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDAR--  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCSS--
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCccc--
Confidence            4678999999543211 111     1123588899999986542   2222222233221   124677899996421  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                        ...+.......+.|+..+.
T Consensus       253 --~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          253 --GGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             --CHHHHHHHHHHCCCEEEEE
T ss_pred             --HHHHHHHHHHHCCCEEEEe
Confidence              1234455666788876654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.81  E-value=0.00068  Score=51.17  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.78  E-value=0.00076  Score=48.99  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|+|++||||||+++.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.77  E-value=0.00081  Score=48.61  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 027503           13 FKAVMIGDSAVGKSNLLSRF   32 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l   32 (222)
                      ..|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.76  E-value=0.00081  Score=49.99  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|++||||+||++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.75  E-value=0.00094  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.74  E-value=0.0008  Score=50.30  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.74  E-value=0.00079  Score=51.97  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37999999999999999987644

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.73  E-value=0.00089  Score=48.41  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999988754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.72  E-value=0.00088  Score=50.30  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...-|+|+|++|||||||++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3446899999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.70  E-value=0.00097  Score=48.21  Aligned_cols=22  Identities=14%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.69  E-value=0.00093  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.69  E-value=0.00095  Score=49.32  Aligned_cols=21  Identities=33%  Similarity=0.476  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.68  E-value=0.00099  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.66  E-value=0.001  Score=50.29  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999853

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.66  E-value=0.0012  Score=49.08  Aligned_cols=25  Identities=16%  Similarity=0.092  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ....|+|.|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3468999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.64  E-value=0.001  Score=54.62  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.64  E-value=0.0011  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...|+|+|+.|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.63  E-value=0.00097  Score=51.05  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999987643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.62  E-value=0.0012  Score=51.07  Aligned_cols=22  Identities=36%  Similarity=0.680  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~   33 (222)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.61  E-value=0.0012  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.57  E-value=0.0013  Score=50.77  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999997643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.57  E-value=0.0013  Score=50.10  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.57  E-value=0.0012  Score=51.79  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.57  E-value=0.0017  Score=47.28  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|+|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.56  E-value=0.0043  Score=46.30  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999988653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.56  E-value=0.0014  Score=49.58  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.56  E-value=0.0012  Score=52.11  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998744

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.56  E-value=0.0013  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|+|.+||||||+++.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.55  E-value=0.0013  Score=49.15  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+|+|+|++||||||+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999976

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.54  E-value=0.0015  Score=50.70  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988743

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.54  E-value=0.0015  Score=49.67  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|+|++||||||+++.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.53  E-value=0.0015  Score=48.72  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.53  E-value=0.0013  Score=51.51  Aligned_cols=22  Identities=18%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998763

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.53  E-value=0.0015  Score=48.56  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.53  E-value=0.0015  Score=50.84  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.52  E-value=0.0014  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.52  E-value=0.0017  Score=48.62  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.52  E-value=0.0013  Score=48.15  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -.++|+|++|+|||+|++.+.+..
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987643

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.51  E-value=0.0014  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.51  E-value=0.0013  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37899999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.51  E-value=0.0013  Score=48.96  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4899999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.50  E-value=0.0016  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.50  E-value=0.0015  Score=52.37  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.50  E-value=0.0065  Score=42.79  Aligned_cols=22  Identities=9%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|++|+|||++++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4599999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.50  E-value=0.0016  Score=52.04  Aligned_cols=24  Identities=38%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      .++++|++|||||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.49  E-value=0.0014  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.49  E-value=0.0016  Score=47.90  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.49  E-value=0.002  Score=47.33  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.48  E-value=0.0015  Score=51.33  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999987743

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.48  E-value=0.0015  Score=50.56  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.47  E-value=0.0018  Score=47.71  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.47  E-value=0.0015  Score=47.77  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ....|+|.|.+||||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345699999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.46  E-value=0.0016  Score=50.99  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.46  E-value=0.002  Score=47.53  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.46  E-value=0.0016  Score=50.68  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.45  E-value=0.0017  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.141  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...|+|+|++||||||+++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999988654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.45  E-value=0.0021  Score=49.69  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...++|+|+|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.45  E-value=0.0017  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4899999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.45  E-value=0.0016  Score=50.66  Aligned_cols=23  Identities=35%  Similarity=0.497  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.43  E-value=0.0018  Score=47.53  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|+|++|||||||++.|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346899999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.42  E-value=0.0016  Score=49.14  Aligned_cols=22  Identities=14%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.42  E-value=0.0019  Score=47.53  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|.+||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.42  E-value=0.003  Score=50.83  Aligned_cols=28  Identities=25%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .....-|+|+|++|||||||++.|.+-.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3456789999999999999999987643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.41  E-value=0.0018  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.41  E-value=0.0019  Score=50.94  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.40  E-value=0.002  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.40  E-value=0.0019  Score=51.11  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.38  E-value=0.0011  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh-hC
Q 027503           14 KAVMIGDSAVGKSNLLSRFA-RD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~-~~   35 (222)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.38  E-value=0.0022  Score=47.83  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.38  E-value=0.0017  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.37  E-value=0.0019  Score=50.44  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.36  E-value=0.0024  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.34  E-value=0.002  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987743

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.34  E-value=0.0023  Score=46.17  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.34  E-value=0.0021  Score=48.70  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.33  E-value=0.0028  Score=47.48  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ....|+|+|++||||||+++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4467999999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.31  E-value=0.0024  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.28  E-value=0.0026  Score=46.84  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...|+|+|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.27  E-value=0.0031  Score=50.92  Aligned_cols=26  Identities=23%  Similarity=0.186  Sum_probs=22.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ....+-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999998865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.27  E-value=0.015  Score=47.12  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.26  E-value=0.0021  Score=46.82  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.25  E-value=0.0023  Score=48.81  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+++.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.25  E-value=0.0029  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.24  E-value=0.0021  Score=52.83  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-+++|+|+.|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.24  E-value=0.002  Score=45.98  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|++|+|||+|++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999987644

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0012  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.23  E-value=0.0027  Score=48.39  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.21  E-value=0.0033  Score=46.21  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.20  E-value=0.0033  Score=49.95  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=21.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .....|+|.|++||||||+++.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.18  E-value=0.0026  Score=52.15  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|+|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999998763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.18  E-value=0.0039  Score=49.66  Aligned_cols=26  Identities=15%  Similarity=0.049  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ......|+|+|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.17  E-value=0.0034  Score=46.73  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...|+|.|.+||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.17  E-value=0.0028  Score=50.00  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|+|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.17  E-value=0.0019  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999998763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.16  E-value=0.058  Score=45.49  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=20.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~   33 (222)
                      .+..-|+|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            456678899999999999999664

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.16  E-value=0.003  Score=46.49  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0081  Score=45.88  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=19.2

Q ss_pred             EEEEE--cCCCCChHHHHHHHhhCc
Q 027503           14 KAVMI--GDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~ll--G~~~sGKSsli~~l~~~~   36 (222)
                      ||+|+  |+++.||++|++++++..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            45555  999999999999998764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.15  E-value=0.0038  Score=46.53  Aligned_cols=23  Identities=13%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.14  E-value=0.0027  Score=52.10  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++|+|+.|||||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            7899999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.14  E-value=0.0043  Score=47.24  Aligned_cols=21  Identities=14%  Similarity=0.362  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999988764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.14  E-value=0.0029  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999987643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.12  E-value=0.0023  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.11  E-value=0.0031  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.10  E-value=0.0033  Score=48.94  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.10  E-value=0.0033  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.09  E-value=0.0029  Score=49.14  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=22.1

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ......|+|+|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.09  E-value=0.0032  Score=46.47  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.08  E-value=0.0032  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            37899999999999999998754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.08  E-value=0.0042  Score=46.44  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .....|+|+|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.08  E-value=0.0023  Score=46.73  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=16.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.08  E-value=0.0034  Score=51.61  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.07  E-value=0.0034  Score=51.60  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.07  E-value=0.0034  Score=51.90  Aligned_cols=23  Identities=43%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.06  E-value=0.0039  Score=48.39  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.06  E-value=0.0034  Score=47.54  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +.|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.05  E-value=0.0041  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.05  E-value=0.0035  Score=46.43  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.05  E-value=0.0043  Score=46.88  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.05  E-value=0.0038  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.020  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.05  E-value=0.0037  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.03  E-value=0.0041  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.03  E-value=0.0055  Score=45.02  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ....|+|.|.+||||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.02  E-value=0.0032  Score=51.09  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.02  E-value=0.0037  Score=51.55  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999988754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.01  E-value=0.0036  Score=51.62  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.01  E-value=0.0046  Score=49.57  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=22.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .....|+|+|+.|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.01  E-value=0.0037  Score=46.88  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.00  E-value=0.0043  Score=45.31  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|+|.+|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.99  E-value=0.0033  Score=51.61  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.99  E-value=0.004  Score=51.39  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|+|++|||||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.98  E-value=0.0039  Score=45.66  Aligned_cols=21  Identities=43%  Similarity=0.634  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.98  E-value=0.0039  Score=50.01  Aligned_cols=84  Identities=17%  Similarity=0.029  Sum_probs=45.7

Q ss_pred             EEEEEeCCChhhhh------------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           62 KAQIWDTAGQERFR------------AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      .+.++|++|.....            .+.+......+.+++++|........   ..+..+.....  . .+|++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~--~-t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG--L-TGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC--C-SEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC--C-cEEEEECCcc
Confidence            35688999943211            11223344678888899987654322   22333332221  2 4667899985


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503          130 THSREVNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~S  155 (222)
                      ....    -.+.......+.|+..+.
T Consensus       260 ~a~g----g~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAKG----GVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCCC----TTHHHHHHHHCCCEEEEE
T ss_pred             cccc----cHHHHHHHHHCCCeEEEe
Confidence            4321    123355556777776664

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.98  E-value=0.0043  Score=47.52  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0092  Score=48.08  Aligned_cols=25  Identities=8%  Similarity=-0.052  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..-.++|.|+||+|||++++.+...
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.95  E-value=0.0016  Score=48.99  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.94  E-value=0.0049  Score=44.45  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.93  E-value=0.0046  Score=48.05  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~   33 (222)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.92  E-value=0.0042  Score=47.51  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.-|+|.|+.||||||+++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.91  E-value=0.0048  Score=45.04  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|.|.+||||||+++.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998663

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.90  E-value=0.0046  Score=46.81  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|+|++|+|||||++.+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.90  E-value=0.007  Score=46.37  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.90  E-value=0.0042  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .|+|+|+.|||||||++.+.+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999988743

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.88  E-value=0.0064  Score=45.32  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-+.|+|.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.87  E-value=0.0047  Score=49.47  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.++|+|+.||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.86  E-value=0.0048  Score=48.53  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|+|||+|++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.85  E-value=0.0047  Score=50.07  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.84  E-value=0.0031  Score=51.54  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.80  E-value=0.0054  Score=47.17  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.80  E-value=0.0046  Score=53.17  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|++|||||||++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998644

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.79  E-value=0.0047  Score=51.23  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999998863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.75  E-value=0.0068  Score=47.91  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~   33 (222)
                      ...+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.69  E-value=0.0052  Score=44.60  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346799999999999999988654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.68  E-value=0.0056  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987644

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.66  E-value=0.0064  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.|+|.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345999999999999999998763

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.66  E-value=0.0067  Score=45.63  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.65  E-value=0.0031  Score=51.69  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.63  E-value=0.0075  Score=45.74  Aligned_cols=24  Identities=13%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999988653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.61  E-value=0.0071  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.214  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999987

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.61  E-value=0.024  Score=41.98  Aligned_cols=85  Identities=13%  Similarity=-0.067  Sum_probs=54.6

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEE  138 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~  138 (222)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+..++..+....  ..+.++.+|+|+.|...  .. ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence            467899999865  344556677899999999887554  56666666665543  23467789999999532  12 23


Q ss_pred             HHHHHHHHcCCeEE
Q 027503          139 EGKILAETEGLYFM  152 (222)
Q Consensus       139 ~~~~~~~~~~~~~~  152 (222)
                      +..++....+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            33444444555443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.60  E-value=0.0068  Score=44.26  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.60  E-value=0.008  Score=44.67  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..++|.|++|+|||+|++.+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999887543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.59  E-value=0.0073  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.58  E-value=0.0077  Score=48.93  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.0054  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.56  E-value=0.0081  Score=47.65  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.52  E-value=0.0085  Score=45.89  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +......|+|+|.+||||||+.+.|..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344566899999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.50  E-value=0.0077  Score=49.39  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.|+|+|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.49  E-value=0.0081  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.46  E-value=0.008  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.|+|+|+.|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.43  E-value=0.0061  Score=47.55  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .....|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45578999999999999999988653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.42  E-value=0.0093  Score=42.05  Aligned_cols=25  Identities=8%  Similarity=0.024  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ...|+|.|++|+|||++++.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999987644

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.41  E-value=0.009  Score=48.09  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..-++|+|..|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4457899999999999999999753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.40  E-value=0.0088  Score=48.83  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +++|+|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.39  E-value=0.028  Score=45.19  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999998653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.36  E-value=0.009  Score=49.32  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|+|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.26  E-value=0.012  Score=45.16  Aligned_cols=24  Identities=13%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-++++|+|+|||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.24  E-value=0.011  Score=44.58  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.24  E-value=0.01  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.22  E-value=0.011  Score=46.84  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.21  E-value=0.012  Score=51.05  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.21  E-value=0.012  Score=44.01  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997643

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.20  E-value=0.011  Score=46.42  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.19  E-value=0.012  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.13  E-value=0.014  Score=41.53  Aligned_cols=19  Identities=37%  Similarity=0.641  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5899999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.12  E-value=0.011  Score=51.64  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.11  E-value=0.011  Score=44.61  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999888765

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.10  E-value=0.011  Score=46.40  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.09  E-value=0.012  Score=49.55  Aligned_cols=23  Identities=39%  Similarity=0.458  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +++|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.07  E-value=0.012  Score=46.78  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.|+|.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999998763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.07  E-value=0.014  Score=43.33  Aligned_cols=21  Identities=38%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.04  E-value=0.012  Score=50.89  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.04  E-value=0.22  Score=39.68  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999998653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.01  E-value=0.013  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.00  E-value=0.013  Score=46.99  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.++|.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.99  E-value=0.013  Score=49.02  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..-|+|+|.+||||||+.+.|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.98  E-value=0.014  Score=46.45  Aligned_cols=25  Identities=20%  Similarity=0.073  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778899999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.93  E-value=0.017  Score=46.45  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .....|+|.|++|+|||+|++.+...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34557999999999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.018  Score=50.49  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            489999999999999999987543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.90  E-value=0.013  Score=51.46  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++++|+.|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.87  E-value=0.018  Score=45.66  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ....++|.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999986554

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.82  E-value=0.16  Score=37.89  Aligned_cols=85  Identities=13%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCh-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 027503           61 IKAQIWDTAGQ-ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE  139 (222)
Q Consensus        61 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  139 (222)
                      +.+.++|+|+. ..  ......+..+|.+|+++..+ ..+...+...+..+....  +.++.+|+|+.|.... . ...+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHH
Confidence            46789999986 42  23456677899999999875 345566666666666533  3668899999985320 1 1334


Q ss_pred             HHHHHHHcCCeEE
Q 027503          140 GKILAETEGLYFM  152 (222)
Q Consensus       140 ~~~~~~~~~~~~~  152 (222)
                      ..+.....+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4444444665543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.80  E-value=0.024  Score=44.20  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .....++|.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.78  E-value=0.016  Score=44.17  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|+|++|+|||+|+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877654

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.77  E-value=0.24  Score=37.57  Aligned_cols=89  Identities=11%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      +.+.++|+|+..  .......+..+|.+|+++..+ ..+...+..++..+.........+.+|+|+.+...  ....   
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~---  190 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS---  190 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence            467899998854  234556678899999999875 55666777777777655433355788899998543  2233   


Q ss_pred             HHHHHHcCCeEEEEccc
Q 027503          141 KILAETEGLYFMETSAM  157 (222)
Q Consensus       141 ~~~~~~~~~~~~~~Sa~  157 (222)
                      ..+....+.+++.+-..
T Consensus       191 ~~~~~~~~~~v~~~ip~  207 (245)
T 3ea0_A          191 DEIEKVIGRPISKRIPQ  207 (245)
T ss_dssp             HHHHHHHTSCEEEEECC
T ss_pred             HHHHHHhCCCeEEECCC
Confidence            33444567776655333

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.76  E-value=0.022  Score=49.96  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.75  E-value=0.018  Score=45.58  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.75  E-value=0.011  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++++|+.|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999988763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.73  E-value=0.016  Score=50.07  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.72  E-value=0.016  Score=47.14  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.++|.|++|+|||+|++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.71  E-value=0.019  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.64  E-value=0.021  Score=46.01  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..-.|+|.|++|+|||+|++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3457999999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.64  E-value=0.021  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.63  E-value=0.02  Score=50.26  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.63  E-value=0.021  Score=45.26  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -.++|.|++|+|||++++.+....
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            469999999999999999887543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.62  E-value=0.02  Score=42.14  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.59  E-value=0.014  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.59  E-value=0.02  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|.|++|+|||+|++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999987644

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.58  E-value=0.018  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.58  E-value=0.021  Score=45.55  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             EEEEEEeCCChhhhhh--hh--Hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA--IT--SSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|......  +.  ...+.  ..+.+++|+|.+..  ...+..+...+.   ..+ ..-+|.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence            3688999999664321  11  12222  36778889987653  233333322222   111 23456799996532  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                        ...+.......++|+..+.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2255566677888765554

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.58  E-value=0.019  Score=46.38  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|.|++|+||||+++.+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999987653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.56  E-value=0.018  Score=44.04  Aligned_cols=24  Identities=21%  Similarity=0.126  Sum_probs=17.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +-.-|+|.|.+||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.54  E-value=0.026  Score=46.14  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..+|+|+|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999987653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.52  E-value=0.022  Score=45.62  Aligned_cols=85  Identities=19%  Similarity=0.115  Sum_probs=46.6

Q ss_pred             EEEEEeCCChhhhhh--------hhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503           62 KAQIWDTAGQERFRA--------ITSS----YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL  129 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~--------~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl  129 (222)
                      .+.++|+||......        +...    .....+.+++|+|.....  ..+.. ...+....   ...-+|+||.|.
T Consensus       188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~---~i~gvVlTk~D~  261 (306)
T 1vma_A          188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV---NVTGIILTKLDG  261 (306)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS---CCCEEEEECGGG
T ss_pred             CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC---CCCEEEEeCCCC
Confidence            578999999532111        1111    112478889999987432  22221 22233221   123466799995


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503          130 THSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      ...    .-.+.......+.|+.++..
T Consensus       262 ~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          262 TAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             CSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             ccc----hHHHHHHHHHHCCCEEEEeC
Confidence            432    12366777778888777643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.49  E-value=0.024  Score=43.49  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..|+|-|.+||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.47  E-value=0.024  Score=45.97  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.46  E-value=0.022  Score=46.74  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      .+|+|+.|||||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.42  E-value=0.022  Score=49.97  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~   37 (222)
                      ++|+|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999987553

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.41  E-value=0.027  Score=41.16  Aligned_cols=35  Identities=3%  Similarity=-0.157  Sum_probs=25.5

Q ss_pred             CeEEEEccccCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503          149 LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC  183 (222)
Q Consensus       149 ~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~  183 (222)
                      +|.+.+-...|.++.-+++.++....-...-....
T Consensus       128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk~~G~~~a  162 (181)
T 3tqf_A          128 VPKILFPIHPGRNLPLLIETLVRNHRLKMEGYDSS  162 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEeccCCCCcHHHHHHHHHHHHHHHHhCCcHH
Confidence            57788888999999999888877665554444333

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.40  E-value=0.03  Score=44.86  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..-|+|+|++|||||+|...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34588999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.38  E-value=0.03  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-|+|+|++|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999998653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.37  E-value=0.027  Score=45.13  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999987653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.024  Score=47.60  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .--|++.|+||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.36  E-value=0.029  Score=42.79  Aligned_cols=24  Identities=17%  Similarity=0.052  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...-|+|.|.+||||||+++.|..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456699999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.33  E-value=0.021  Score=42.92  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +.|+|.|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.29  E-value=0.025  Score=47.48  Aligned_cols=25  Identities=28%  Similarity=0.240  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +.-.|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3457999999999999999998763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.29  E-value=0.012  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.28  E-value=0.025  Score=45.59  Aligned_cols=21  Identities=14%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.21  E-value=0.023  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.19  E-value=0.027  Score=47.33  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +.-.|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998763

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.16  E-value=0.27  Score=37.87  Aligned_cols=67  Identities=13%  Similarity=0.080  Sum_probs=42.9

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHHcCCCCeEE-EEEeCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL---REFCSSCMAIV-LVGNKSDLT  130 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l---~~~~~~~~p~i-vv~nK~Dl~  130 (222)
                      +.+.++|+|+....  .....+..+|.+|+++..+. .+...+..++..+   ......+.+++ +|+|+.|..
T Consensus       112 yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          112 YDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             CSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             CCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            56899999986432  23445667999999998864 3444444444443   33333457764 889999853

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.14  E-value=0.026  Score=45.97  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.++|.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.11  E-value=0.03  Score=42.35  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.-|+|.|.+||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.10  E-value=0.029  Score=43.52  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..|+|.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999987644

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.08  E-value=0.016  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=17.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+.|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.07  E-value=0.028  Score=48.72  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.++|+|++|+|||||++.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.06  E-value=0.0044  Score=47.49  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhhCcC
Q 027503           15 AVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~~   37 (222)
                      ++|+|+.|||||||++.+.+-..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            46899999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-51
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-50
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	9e-48
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-47
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-46
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-46
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-46
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-44
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-42
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-38
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-37
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-35
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-34
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-31
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-31
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-30
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-30
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-30
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-29
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-29
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-29
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-29
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-28
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-27
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-26
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-25
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	7e-25
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	7e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-22
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-22
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-22
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-22
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-21
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-20
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-18
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-18
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-15
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-15
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-13
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-09
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-04

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (412), Expect = 2e-51
 Identities = 88/189 (46%), Positives = 120/189 (63%)

Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           E DYLFK ++IG+S VGKS LL RF+ D +  D   TIGV+F  + + +  K +K QIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAGQERFR ITSSYYRG+ G ++VYD+T + +F   K WL+E+  + +S +  +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121

Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMN 187
           DL   R V  +  K  A+   + F+ETSA+ + NVEDAFL M  QI ++  Q++L     
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 181

Query: 188 DKTATSNCN 196
            K    N N
Sbjct: 182 KKEDKGNVN 190

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (402), Expect = 3e-50
 Identities = 82/164 (50%), Positives = 113/164 (68%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK ++IGDS VGK+ +L RF+ D F      TIG++F  R I +  K IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR IT++YYRGA+G +LVYDIT   +F+N + W+R + E  S+ +  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
              R+V++E G+ LA   G+ FMETSA  N+NVE+AF  +   I
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (386), Expect = 9e-48
 Identities = 105/173 (60%), Positives = 133/173 (76%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V  K IKAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R ITS+YYRGA+GALLVYDI +  T+EN ++WL+ELR+   S + I+LVGNKSDL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
            H R V  +E +  AE   L F+ETSA+ + NVE+AF  ++ +I++   QK +
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 1e-47
 Identities = 88/165 (53%), Positives = 109/165 (66%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
            Y+FK ++IGD  VGKS LL +F   +F  D   TIGVEF  R I V  + IK QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFRA+T SYYRGA GAL+VYDITRR+T+ +   WL + R   +    I+L+GNK+DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
              R+V  EE K  AE  GL F+E SA    NVEDAFL+   +I+
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (378), Expect = 1e-46
 Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           + K ++IGDS VGKS LL RF  D+F      TIG++F  + + +  K +K QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
           ERFR IT++YYRGA+G +LVYDIT   TF N K+W + + E  +    ++LVGNKSD+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            R V  ++G+ LA+  G+ F+E+SA  + NV + F  +   I +
Sbjct: 122 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (378), Expect = 1e-46
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)

Query: 7   EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQI 65
           +  D  FK +++GDS VGK+ LL RF    F   +   T+G++F  + + V    +K Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR++T +YYR A   LL+YD+T +A+F+N + WL E+ E+    +A++L+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           K D  H R V  E+G+ LA+  GL FMETSA   LNV+ AF  +  ++ +
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 2e-46
 Identities = 72/166 (43%), Positives = 109/166 (65%)

Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
           + D+LFK V+IG++ VGK+ L+ RF +  F      TIGV+F  + + +  + +K QIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 68  TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
           TAGQERFR+IT SYYR A   +L YDIT   +F    +WLRE+ ++ S+ +  VLVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           DL   REV+++  +  +E + +Y++ETSA ++ NVE  FL +  ++
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  144 bits (363), Expect = 2e-44
 Identities = 71/166 (42%), Positives = 108/166 (65%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           DY+FK ++IG+S+VGK++ L R+A D F      T+G++F  + I   DK IK QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQER+R IT++YYRGA+G +L+YDIT   +F   + W  +++ +      ++LVGNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              R V+ E G+ LA+  G  F E SA  N+NV+  F ++++ I +
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 3e-43
 Identities = 73/171 (42%), Positives = 98/171 (57%)

Query: 6   DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
           DE+     K ++IG+S VGKS+LL RF  D F  +   TIGV+F  + I V     K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 66  WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
           WDTAGQERFR +T SYYRGA G +LVYD+TRR TF     WL EL  +C+    + ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
                 +REV+  EG   A    + F+E SA     V+ AF +++ +I QT
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 8e-43
 Identities = 94/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           YLFK ++IGD+ VGKS LL +F    F+     TIGVEF  R + +  K IK QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QE FR+IT SYYRGA GALLVYDITRR TF +   WL + R+  SS M I+L+GNKSDL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
             R+V  EEG+  A   GL FMETSA    NVE+AF+    +I++  IQ+ L
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR-KIQQGL 172

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 4e-42
 Identities = 85/166 (51%), Positives = 107/166 (64%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D+LFK ++IG++  GKS LL +F   +F+ DS  TIGVEF  + I VG K +K QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQERFR++T SYYRGA GALLVYDIT R T+     WL + R   S  + I+L GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              REV   E    A+   L F+ETSA+   NVE+AF+Q   +I  
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 2e-40
 Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 11/179 (6%)

Query: 8   ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL------- 60
           + DYL K + +GDS VGK+  L R+  ++F      T+G++F  + +    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  ---IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSS 116
              +  Q+WDTAGQERFR++T++++R A+G LL++D+T + +F N      +        
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 117 CMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              IVL+GNK+DL   REVNE + + LA+  G+ + ETSA    NVE A   +++ I +
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 8e-38
 Identities = 66/161 (40%), Positives = 105/161 (65%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V +G+ +VGK++L++RF  D F    + TIG++F  + + + D+ I+ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFR++  SY R +  A++VYDIT   +F+ T KW+ ++R    S + I+LVGNK+DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           R+V+ EEG+  A+   + F+ETSA    NV+  F ++   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 2e-37
 Identities = 65/166 (39%), Positives = 101/166 (60%)

Query: 11  YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
           Y FK V++G+  VGK++L+ R+  ++F      T+G  F  + + +G K +   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
           QERF A+   YYR + GA+LVYDIT   +F+  K W++ELR+   + + + +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
             R V+ +E +  AE+ G     TSA QN  +E+ FL +  ++ +T
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 4e-35
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +F    F     PTI  +F  + I V       +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTH 131
           +F ++   Y +   G +LVY +  + +F++ K    ++        + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            REV+  EG+ LAE  G  FMETSA     V++ F +++ Q++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 7e-35
 Identities = 67/163 (41%), Positives = 104/163 (63%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++G+SAVGKS+L+ RF + +F    + TIG  F  + + + D  +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           R+ ++   YYRGA  A++VYDIT   +F   K W++EL+   S  + I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           R V+ +E +  A+   L FMETSA  ++NV + F+ +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 8e-34
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 4/171 (2%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
             LFK +++GD  VGKS+L++R+  ++F      TIGVEF  +++ V    +  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC----MAIVLVGN 125
           GQERFR++ + +YRG+   LL + +    +F+N   W +E   +           V++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
           K D++  +   EE      +     + ETSA    NV  AF + + ++  T
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  112 bits (280), Expect = 6e-32
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +M+G   VGKS L  +F  DEF  D +PT    +  + + +  + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLT 130
           E + AI  +Y+R   G L V+ IT   +F  T  +  ++        +  +LVGNKSDL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             R+V+ EE K  A+   + ++ETSA    NV+  F  ++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (277), Expect = 2e-31
 Identities = 67/161 (41%), Positives = 100/161 (62%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++GD+ VGKS+++ RF  D F  +  PTIG  F  + ++  ++L K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           RFRA+   YYRG+  A++VYDIT+  TF   K W+RELR+     + + + GNK DLT  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           REV E + K  A++    F+ETSA   +N+ + F+++  +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (276), Expect = 3e-31
 Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++G++AVGKS+++ RF  ++F  + +PTIG  F  + + + +  +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-- 131
           F ++   YYR A  AL+VYD+T+  +F   + W++EL E  S  + I LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 132 -SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
             R+V  EEG+ LAE +GL F ETSA    NV D FL +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 6e-31
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  ++F  +  PT+  +     + +G +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
            +  +    Y      L+ + +   ++FEN K+               +LVG + DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 133 REVNE------------EEGKILAET-EGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
               E            E  + LA   + + ++E SA+    +++ F + I    +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 180 K 180
           K
Sbjct: 183 K 183

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 3e-30
 Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           ++ V++G   VGKS L  +F +  F  D  PTI  +   +   + D+  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
            F A+   Y R   G LLV+ +T R +FE   K+ R+ LR        ++L+GNK+DL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            R+V +EEG+ LA    + +ME SA   +NV+ AF +++  I +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (268), Expect = 5e-30
 Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 4/175 (2%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++GDS VGK++L++++   +F    K TIG +F  + + V D+L+  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKW----LRELREFCSSCMAIVLVGNKS 127
           ERF+++  ++YRGA   +LV+D+T   TF+    W    L +           V++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           DL + +   +           + + ETSA + +NVE AF  +     +   +  L
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 6e-30
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 14/177 (7%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
             + K V++GD AVGK+ LL  +A D F  +  PT+  +    ++ VG K     ++DTA
Sbjct: 7   ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
           GQE +  +    Y      L+ + +   A+F+N K+      +  +  +  +L+G + DL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 130 THSRE------------VNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
               +            +  E+G+ LA+  G   ++E SA+    ++  F + I  I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 2e-29
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 2/167 (1%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
               K V++G   VGKS L  +F +  F  D  P    +   +   V     +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSD 128
           GQE F A+   Y R   G LLV+ I  R +F    K   ++          +VLVGNK+D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           L   R+V   E      +  + + E SA   LNV++AF Q++  + +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 2e-29
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +F +  F     PTI  +   + + V  +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLR-ELREFCSSCMAIVLVGNKSDLTH 131
           +F A+   Y +   G  LVY IT ++TF + +      LR   +  + ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 132 SREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
            R V +E+G+ LA +     F+E+SA   +NV + F  ++ QI+
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 6e-29
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++G   VGKS L  +  ++ F  +  PTI   +  + +    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQE 62

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTH 131
            + A+   Y R   G L V+ I    +FE+  ++  +++       + +VLVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
               + +   + A + G+ ++ETSA     VEDAF  ++ +I Q
Sbjct: 123 RTVESRQAQDL-ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           +FK ++IGDS VGK+ L  RF    F   ++ TIGV+F  R + +  + IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 72  ERF-RAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDL 129
           ERF +++   YYR     + VYD+T  A+F +   W+ E  +   ++ +  +LVGNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 130 THSREVNEEEGKILAETEGLYFMETSA---MQNLNVEDAFLQM 169
             + +V  +  +  A+T  +   ETSA     N +VE  F+ +
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 3e-28
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD AVGK+ LL  +  + F  +  PT+   ++   +  G   +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP-VNLGLWDTAGQE 64

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
            +  +    Y     +L+ + +   A+FEN +               I+LVG K DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 133 REVNEE------------EGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQTT 177
           ++  E+            +G  +A+  G + ++E SA+    ++  F + I  +    
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 6e-28
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 3/168 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           ++  + G   VGKS+L+ RF +  FR    PT+   +          +   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-KSICTLQITDTTGSH 61

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLT 130
           +F A+           +LVY IT R + E  K    ++ E       + I+LVGNK D +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTI 178
            SREV   E + LA T    FMETSA  N NV++ F +++N   + T+
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 169

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (252), Expect = 8e-28
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K V++GD  VGKS L  +F +  F  D  PTI   +  ++  + ++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTH 131
            F A+   Y R   G L+VY +T +A+FE+  ++ + +          ++LV NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 132 SREVNEEEGKILAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
            R+V  ++GK +A    + ++ETSA    LNV+  F  ++  I Q
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 99.6 bits (247), Expect = 6e-27
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            + +M+G  A GK+ +L +    +       T      +    V  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTH 131
           + R +   YY G  G + V D   R   +  ++ L  +  +       I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 132 SR---EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +    E+ E+ G         Y   + A     + +    + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 96.3 bits (238), Expect = 7e-26
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           + +M+G  A GK+ +L +    E       T      +    V  K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKS---DL 129
            R +   Y++   G + V D   R      ++ L   L E       +++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            ++ E+ ++ G         Y   T A     + +    + NQ+
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 95.8 bits (237), Expect = 2e-25
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            + +++G    GK+ +L R    E    +KPTIG         +  K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV----ETLSYKNLKLNVWDLGGQT 72

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTH 131
             R     YY      + V D T +       K L  + +E      A+++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 132 ---SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
              + EV++E   +  +      + +SA++   + +    +I+ I +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.8 bits (234), Expect = 5e-25
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI-RVGDKLIKAQIWDTAG 70
           + K +++GDS VGK++L+ R+  D++    K TIG +F  + +   GDK+   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 71  QERFRAITSSYYRGALGALLVYDITRRATFENTKKW----LRELREFCSSCMAIVLVGNK 126
           QERF+++  ++YRGA   +LVYD+T  ++FEN K W    L             V++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 127 SDLTHSREVNEEEG--KILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            D   S+++  E+   ++      +    TSA   +NV+ AF ++     Q
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 5e-25
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++GDS  GK+ LL  FA+D F  +  PT+  E    +  +  + I+  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS- 132
           +  +    Y  +   L+ +DI+R  T ++  K  +   +       ++LVG KSDL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 133 -----------REVNEEEGKILAETEG-LYFMETSAMQNLN-VEDAFLQMINQI 173
                        V+ ++G  +A+  G   ++E SA+Q+ N V D F       
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 7e-25
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 14/174 (8%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V++GD A GK+ LL   ++D+F     PT+  E    +I V  K ++  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
            +  +    Y      L+ + I    + EN  +      +     + I+LVGNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 133 REVNE------------EEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
                            EEG+ +A   G + +ME SA     V + F       
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.6 bits (231), Expect = 8e-25
 Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K V++G+ AVGKS+++ R+ +  F  D K TIGV+F  R I+V D+ ++  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
           F AIT +YYRGA   +LV+  T R +FE    W  ++           LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 122

Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
            +  EE + LA+   L F  TS  ++LNV + F  +  +  Q
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 7e-23
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           FK V++GD   GK+  + R    EF      T+GVE            IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
           +F  +   YY  A  A++++D+T R T++N   W R+L   C +   IVL GNK D+   
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 122

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +   +    +    + L + + SA  N N E  FL +  ++
Sbjct: 123 KVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 1e-22
 Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K +++G    GK+ +L +F+ +E                   +     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
             R+  ++YY      ++V D T R     T++ L + L         +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 132 S---REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
                E+++       +    +     A+    +      M++++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  + G + VGKS L+ RF    F  +  PT+   +      + D+++  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTH 131
                   + R   G +LVYDIT R +FE        L E      + ++LVGNK+DL H
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQMINQIHQ 175
           SR+V+ EEG+ LA      F E SA     N+ + F ++  ++ +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 6e-22
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            + +M+G    GK+ +L +F  ++       TI     +    +  +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
             R+   +Y+    G + V D   R   ++ ++ L+  L E   +   +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 132 SREVNE---EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +   N            +        SA+   ++      +++ I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 7e-22
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K  ++G  +VGKS+L  +F   +F     PTI   F  + I V  +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTH 131
            +     +Y     G +LVY +T   +FE  K    + L       + I+LVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
            R ++ EEGK LAE+    F+E+SA +N    D F ++I + 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 85.8 bits (211), Expect = 1e-21
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           D   + +++G    GK+ LL + A ++    +         +    V  +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG-----FNIKSVQSQGFKLNVWDIG 68

Query: 70  GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSD 128
           GQ + R    SY+      + V D   R  FE T + L EL  E   SC+ +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 LTHSR---EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           L  +    E+ E                 SA+    V+D    +   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (207), Expect = 4e-21
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
           +K +++G   VGKS L   F   E     +         R+I V  +     ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTH 131
             R +           ++VY +T + +FE   +   +LR    +     +LVGNKSDL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           SREV+ +EG+  A      F+ETSA  + NV+  F  ++ QI  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 8/165 (4%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            +  ++G    GK+  ++  A  +F  D  PT+G         +    +  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTH 131
           RFR++   Y RG    + + D   +   E +K  L   L +     + ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 132 S---REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +   +E+ E+      +   +     S  +  N++     +I   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 2e-20
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
           +  ++ V+IG+  VGKS L + FA     +DS   +  E  Y    + D      I    
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  G--QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNK 126
              +     +     +     L+VY IT RA+FE   +   +LR    +    I+LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
           SDL   REV+  EG+  A      F+ETSA    NV++ F  ++ Q+  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            +  ++GD+  GKS+L+ RF    +          E   + + V  +     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD--LT 130
             +    +     +    + D             L  LR      +A+ LVG +     +
Sbjct: 64  DAKFSGWADA--VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 131 HSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
             R V +   + L  + +   + ET A   LNV+  F ++  ++     Q+ L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 16/164 (9%)

Query: 14  KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
           K + +G    GK+ LL     D        T+   +   +  +    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 74  FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
            R +   Y+    G + + D      F+  +  L  L        +  V++GNK D  ++
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 REVNE----------EEGKILAETEGLYFMETSAMQNLNVEDAF 166
               E             + +     +     S +      +AF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 3e-18
 Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 47/207 (22%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K +++G    GKS  + +           PT G+           + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 73  RFRAITSSYYRGALGALLVYDIT-----------RRATFENTKKWLRELREFCSSCMAIV 121
             R      +      + +  ++                E+   +   +        +++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 LVGNKSDLTHSREVNEEEGKILAETEG--------------------------LYFMETS 155
           L  NK DL   + +         E +G                          +Y   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 156 AMQNLNVEDAFLQMINQIHQTTIQKSL 182
           A    N+   F      +  T +Q +L
Sbjct: 177 ATDTENIRFVF----AAVKDTILQLNL 199

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 9e-18
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            + +++G    GK+ +L R    E       T      +    V  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTH 131
             R     YY      + V D   R     +K  L  +  E       +V+  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 132 SREVNE---EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +   +E     G    +       +TSA +   +++A   ++  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 49/209 (23%)

Query: 12  LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
           L K +++G    GKS  L +      +    PT G+           K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIHGQ---DPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 72  ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-----------LREFCSSCMAI 120
              R      +      L +   +         +               +     S ++I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEG---------------------------LYFME 153
           +L  NK+DL   +           E EG                           LY   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 154 TSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
           T+A+   N+   F      +  T +  +L
Sbjct: 175 TTAINTENIRLVF----RDVKDTILHDNL 199

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.6 bits (172), Expect = 1e-15
 Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 19/141 (13%)

Query: 10  DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
               + +++G    GKS ++ +            T G+       +     +   ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE----TKFQVDKVNFHMFDVG 55

Query: 70  GQERFRAITSSYYRGALGALLVY-----------DITRRATFENTKKWLRELREFCSSCM 118
           GQ   R      +      + V            D       E    +           +
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 119 AIVLVGNKSDLTHSREVNEEE 139
           +++L  NK DL   + +  + 
Sbjct: 116 SVILFLNKQDLLAEKVLAGKS 136

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 65.5 bits (158), Expect = 7e-14
 Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 21/177 (11%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V +G    GK+ LL     D                 +  +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRL-----GQHVPTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTH 131
           + R +  +Y     G + + D         +K+ L  L    + + + I+++GNK D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 132 SREVNE---------------EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           +                               L     S ++     + F  M   I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           + +G    GK+ L  R    ++R D++ +I    A   +          I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 76  AITSSYYRGALGALLVYDITRRATF-ENTKKWLREL---REFCSSCMAIVLVGNKSDLTH 131
            +   +   A   + V D        ++  ++L ++        +  ++++  NK D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVED 164
           ++     + ++  E   L    ++A   L+   
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 155

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 50/205 (24%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K +++G    GKS ++ +              G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 73  RFRAITSSYYRGALGALLVYDITRRATF-----------ENTKKWLRELREFCSSCMAIV 121
             R      + G    +    ++                E+ K +         +  +I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 LVGNKSDLTHSREVNEEEGKILAETEG--------------------------LYFMETS 155
           L  NK DL   +           E  G                          +Y   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 156 AMQNLNVEDAFLQMINQIHQTTIQK 180
           A    NV+  F    + +    I+ 
Sbjct: 174 ATDTKNVQFVF----DAVTDVIIKN 194

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 23/174 (13%)

Query: 16  VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
           ++ G    GK++LL+    D      +PT+  +            +   + D  G  + R
Sbjct: 7   IIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPGHVKLR 60

Query: 76  AITSSYYRGALGA-----LLVYDITRRATFENTKKWLREL----REFCSSCMAIVLVGNK 126
              S Y +           +V           T ++L ++       C + + I++  NK
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120

Query: 127 SDLTHSREVN------EEEGKILAETEG--LYFMETSAMQNLNVEDAFLQMINQ 172
           S+L  +R  +      E E + + E     L  +E    +    E+    + + 
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 2/160 (1%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
            K V+ G    GKS+LL+  A  E  + +    G         +    +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 73  RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
                            +          + T     +  E     +A +       +  +
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172
           +     E   ++E  G   +  SA     V+      + Q
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDV-LRNHLKQ 159

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 17  MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG------ 70
           ++G    GKS+LL+   R   ++   P   +      + V ++  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGAS 64

Query: 71  --QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128
             +           R  +   ++           T +      +        ++  NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
           L     V      +    EGL  +  SA+    +  A  + ++ +
Sbjct: 125 LLEEEAVKALADAL--AREGLAVLPVSALTGAGL-PALKEALHAL 166

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 8/172 (4%)

Query: 13  FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI--WDTAG 70
               + G++  GKS+ ++         +     GV                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 71  QERFRAITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128
                    +Y              I+     +N     + +            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
                   + E +   + + L  +  + +            I  +    +  
Sbjct: 174 S-DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.62
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.52
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.5
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.22
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.21
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.13
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.01
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.93
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.49
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.29
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.13
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.1
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.03
d1okkd2	207	GTPase domain of the signal recognition particle r	97.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.9
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.84
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.82
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.6
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.49
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.46
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.31
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.29
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.26
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.2
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.16
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.15
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.14
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.13
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.05
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.01
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.01
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.0
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.0
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.85
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.84
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.79
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.79
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.79
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.78
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.78
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.77
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.75
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.72
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.71
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.7
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.66
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.66
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.65
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.65
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.65
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.63
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.62
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.61
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.61
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.58
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.46
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.46
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.45
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.44
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.43
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.42
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.41
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.37
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.34
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.3
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.29
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.29
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.19
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.19
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.15
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.13
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.13
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.12
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.05
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.01
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.89
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.88
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.8
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.78
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.68
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.66
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.61
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.61
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.61
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.56
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.53
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.48
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.37
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.28
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.25
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.92
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.92
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.86
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.84
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.8
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.72
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.65
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.57
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.55
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.22
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.19
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.17
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.13
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.8
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.74
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.71
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.64
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.63
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.63
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.54
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.46
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.43
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.4
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.38
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.27
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.24
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.21
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.18
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.7
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.57
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.55
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.11
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.01
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.75
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.39
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.3
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.85
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.82
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.8
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.88
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.7
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	88.15
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.82
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.81
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.49
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.47
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.74
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.51
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.95
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	81.72
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	81.13
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.6
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.36

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-37  Score=228.75  Aligned_cols=168  Identities=42%  Similarity=0.787  Sum_probs=158.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            57899999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||+++++++..+..|+..+........|+++|+||+|+.+...++.++++.++..++++|+++||++|.||.++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999999888777777799999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027503          168 QMINQIHQ  175 (222)
Q Consensus       168 ~l~~~i~~  175 (222)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=228.75  Aligned_cols=169  Identities=43%  Similarity=0.755  Sum_probs=159.4

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            57899999999999999999999999999998989999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +++|||++++.++..+..|+..+........|++||+||+|+.+...+..++++.++...++++++|||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999998887777799999999999988788889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027503          168 QMINQIHQT  176 (222)
Q Consensus       168 ~l~~~i~~~  176 (222)
                      +|++++.+.
T Consensus       161 ~l~~~l~~~  169 (171)
T d2ew1a1         161 DLACRLISE  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-36  Score=227.16  Aligned_cols=179  Identities=47%  Similarity=0.787  Sum_probs=166.5

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      ++++.+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            68999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||+++++++..+..|+..+.......+|+++|+||+|+.+...+..++...++...++.|+++||++|.||.++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999998888877777799999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhcc
Q 027503          168 QMINQIHQTTIQKSLCAKM  186 (222)
Q Consensus       168 ~l~~~i~~~~~~~~~~~~~  186 (222)
                      +|++.+.+....+......
T Consensus       162 ~l~~~i~~~~~~~~~~~~~  180 (194)
T d2bcgy1         162 TMARQIKESMSQQNLNETT  180 (194)
T ss_dssp             HHHHHHHHHCCHHHHHTTS
T ss_pred             HHHHHHHHHhhhcccCccc
Confidence            9999998877666665333

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=222.54  Aligned_cols=165  Identities=53%  Similarity=0.857  Sum_probs=156.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            57899999999999999999999999999999889898999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ++|||+++.+++..+..|+..+........|+++++||+|+........++++.++...+++|++|||++|.||.++|++
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998888777999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027503          169 MINQI  173 (222)
Q Consensus       169 l~~~i  173 (222)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=225.40  Aligned_cols=166  Identities=39%  Similarity=0.712  Sum_probs=150.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .|.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus         1 ~y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           1 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|||+++++||+.+..|+..+........|++||+||+|+.+.+.++.++++.++..++++|++|||++|.||+++|++|
T Consensus        81 ~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          81 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999988877766668999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++++.+
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-36  Score=222.69  Aligned_cols=172  Identities=61%  Similarity=0.969  Sum_probs=157.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.......+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            57899999999999999999999999999888888888888889999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |+|||++++.++..+..|+..+......++|++||+||+|+.+.+....+....+....+.+|+++||++|.|++++|++
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998888878999999999999887777888889999999999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 027503          169 MINQIHQTTIQK  180 (222)
Q Consensus       169 l~~~i~~~~~~~  180 (222)
                      +++.+.+...++
T Consensus       161 l~~~i~~~~~~~  172 (175)
T d2f9la1         161 ILTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHhhhc
Confidence            999987655543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-36  Score=222.11  Aligned_cols=171  Identities=50%  Similarity=0.783  Sum_probs=160.0

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .+++.+||+|+|++|||||||+++|..+.+...+.++.+.......+..++....+.+||+||++.+..++..++..+|+
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            37899999999999999999999999999998988999888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||.++++++..+..|+..+.......+|+++|+||+|+........+.+..++...+++|+++||++|.|++++|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            99999999999999999999998888777799999999999988788888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027503          168 QMINQIHQTTI  178 (222)
Q Consensus       168 ~l~~~i~~~~~  178 (222)
                      ++++.+.++..
T Consensus       161 ~l~~~i~~~~~  171 (174)
T d2bmea1         161 QCARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999886643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-36  Score=222.35  Aligned_cols=163  Identities=39%  Similarity=0.623  Sum_probs=153.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.+........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ||++++.+++.+..|+..+...... +|++||+||+|+.+.+.++.++++.++..++++|+++||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~-~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCS-CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCC-ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            9999999999999999998876654 899999999999888889999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027503          172 QIHQ  175 (222)
Q Consensus       172 ~i~~  175 (222)
                      .+.+
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=220.84  Aligned_cols=166  Identities=29%  Similarity=0.352  Sum_probs=135.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .|||+|+|++|||||||+++|.+..+... .++ +.+.+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            38999999999999999999998775433 233 3445556788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      ||++++.+++.+..|+..+.... ...+|+++|+||+|+.+.+.++..+++.++..++++|+++||++|.||.++|+.|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999987765 45689999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q 027503          171 NQIHQTTIQ  179 (222)
Q Consensus       171 ~~i~~~~~~  179 (222)
                      +.+..++.+
T Consensus       159 ~~i~~~~~~  167 (168)
T d2gjsa1         159 RQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhC
Confidence            988766543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=220.29  Aligned_cols=168  Identities=54%  Similarity=0.849  Sum_probs=153.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .|.+||+|+|++|||||||+++|.+..+...+.++.+...........+..+.+.+||++|++.+..++..++..+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            47899999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      +|||++++.+|+.+..|+..+......++|++||+||+|+...+....+++..++...+++|+++||++|.||+++|.++
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999988877789999999999998878888999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 027503          170 INQIHQTT  177 (222)
Q Consensus       170 ~~~i~~~~  177 (222)
                      ++.+++..
T Consensus       161 ~~~i~~~~  168 (173)
T d2a5ja1         161 AKEIYRKI  168 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-36  Score=222.39  Aligned_cols=170  Identities=48%  Similarity=0.834  Sum_probs=130.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      .+++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            57899999999999999999999999999888888888889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +|+|||++++.++..+..|+..+......+.|+++|+||.|+........+++..++...+++|++|||++|.||.++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999878777799999999999988778888889999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027503          168 QMINQIHQTT  177 (222)
Q Consensus       168 ~l~~~i~~~~  177 (222)
                      +|++.+.++.
T Consensus       162 ~l~~~i~~k~  171 (173)
T d2fu5c1         162 TLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=219.72  Aligned_cols=168  Identities=32%  Similarity=0.475  Sum_probs=152.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ....+||+|+|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            4567999999999999999999999999988877765 555667888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |+|||++++.+|..+..|+..+.... ..++|++||+||+|+.+.+....+++..++...+++|++|||++|.||+++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999876653 46689999999999988788889999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027503          168 QMINQIHQTT  177 (222)
Q Consensus       168 ~l~~~i~~~~  177 (222)
                      .|++.+.+.+
T Consensus       162 ~l~~~i~k~~  171 (173)
T d2fn4a1         162 QLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=217.57  Aligned_cols=161  Identities=41%  Similarity=0.712  Sum_probs=152.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      |||+|+|++|||||||+++|.++.+...+.++.+.+........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999988888888899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      |++++.++..+..|+..+.......+|+++|+||+|+.+...+..+++..++..++++|++|||++|.||+++|++|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777779999999999998878888899999999999999999999999999999999886


Q ss_pred             H
Q 027503          173 I  173 (222)
Q Consensus       173 i  173 (222)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-35  Score=216.04  Aligned_cols=163  Identities=41%  Similarity=0.735  Sum_probs=154.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+..........++....+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            67999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |||++++++|..+..|+..+........|+++|+||+|+.+.+.+..++++.++...+++|+++||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888888877899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027503          171 NQI  173 (222)
Q Consensus       171 ~~i  173 (222)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3.2e-35  Score=217.63  Aligned_cols=164  Identities=34%  Similarity=0.539  Sum_probs=147.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|..+.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999888888887654 4667889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.+.+.++.++++.++...+++|+++||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999887664 5679999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=216.93  Aligned_cols=164  Identities=34%  Similarity=0.448  Sum_probs=150.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||++|.+.+..++..++..+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999999888888887664 467888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++++|..+..|+..+.... ..++|++||+||+|+...+.++.++++.++..++++|++|||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886654 567999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          169 MINQIH  174 (222)
Q Consensus       169 l~~~i~  174 (222)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-34  Score=215.02  Aligned_cols=164  Identities=33%  Similarity=0.530  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+++|++|||||||+++|.++.+.+.+.++.+.. +...+..++..+.+.+||++|.+.+..++..+++++|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            36899999999999999999999999888888877544 45677889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC-CHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFLQ  168 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~  168 (222)
                      |||++++.+|..+..|+..+.+.. ...+|+++|+||+|+.+.+.++.+++..++..++++|+++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999887664 5679999999999999888899999999999999999999999886 99999999


Q ss_pred             HHHHHHH
Q 027503          169 MINQIHQ  175 (222)
Q Consensus       169 l~~~i~~  175 (222)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=222.53  Aligned_cols=171  Identities=37%  Similarity=0.682  Sum_probs=152.1

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC----------eEEEEEEEeCCChhhhhhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----------KLIKAQIWDTAGQERFRAI   77 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~   77 (222)
                      ++++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            578999999999999999999999999998888888877777666665543          3468999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA  156 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (222)
                      +..+++++|++|+|||++++.+++.+..|+..+.... ....|++||+||+|+.+.+.++.+++..++..++++|+++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            9999999999999999999999999999988765543 455889999999999888889999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhh
Q 027503          157 MQNLNVEDAFLQMINQIHQTTI  178 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i~~~~~  178 (222)
                      ++|.||+++|++|++.+.++..
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=214.21  Aligned_cols=164  Identities=41%  Similarity=0.731  Sum_probs=154.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      -.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+||++|++.+..++..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |||++++.+++.+..|+..+......++|++||+||+|+.+.+.++.++++.++...+++|+++||++|.||.++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887777799999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 027503          171 NQIH  174 (222)
Q Consensus       171 ~~i~  174 (222)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=217.45  Aligned_cols=163  Identities=24%  Similarity=0.342  Sum_probs=142.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      ..+||+|+|++|||||||+++|..+.+...+.++.+. ........++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4689999999999999999999999998888888864 455667788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEccc
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEG-LYFMETSAM  157 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  157 (222)
                      |||+++++||+++..|+.........+.|+++|+||+|+.+            ...+..++++.++...+ ++|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998765555445555699999999999853            34588899999999865 789999999


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 027503          158 QNLNVEDAFLQMINQIH  174 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~  174 (222)
                      +|.||+++|+.+++.+.
T Consensus       161 ~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         161 TQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999987664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=212.86  Aligned_cols=166  Identities=35%  Similarity=0.569  Sum_probs=146.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      +..+||+|+|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|+++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            3458999999999999999999999998888877765 556677888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      +|||++++.+++.+..|+..+.... ....|++||+||+|+.+.+.+..+++..++...+++|++|||++|.||+++|+.
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999998765553 456899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027503          169 MINQIHQT  176 (222)
Q Consensus       169 l~~~i~~~  176 (222)
                      |++.+.+.
T Consensus       162 l~~~i~k~  169 (171)
T d2erya1         162 LVRVIRKF  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=212.13  Aligned_cols=166  Identities=44%  Similarity=0.762  Sum_probs=145.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      |++.+||+|+|+++||||||+++|.++.+.... .++.+.+.....+..++..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            789999999999999999999999998876554 5556778888889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      +++|||++++.++..+..|+..+........|+++|+||+|+.+...++.+++..++..++++|+++||++|.||+++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888887777799999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027503          168 QMINQIH  174 (222)
Q Consensus       168 ~l~~~i~  174 (222)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=216.62  Aligned_cols=167  Identities=29%  Similarity=0.498  Sum_probs=145.8

Q ss_pred             CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503            6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA   85 (222)
Q Consensus         6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (222)
                      ..+....+||+|+|++|||||||+++|..+.+...+.+|.+ +.....+...+..+.+.+||++|++.+..++..+++.+
T Consensus         3 ~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a   81 (185)
T d2atxa1           3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT   81 (185)
T ss_dssp             SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccc
Confidence            34667899999999999999999999999999888888885 44556777888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeE
Q 027503           86 LGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEG-LYF  151 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~  151 (222)
                      |++++|||++++++|+++.. |...+... ...+|+++|+||+|+.+            .+.++.+++..++...+ +.|
T Consensus        82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          82 DVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             ceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            99999999999999998765 44445544 44599999999999864            35678899999999987 789


Q ss_pred             EEEccccCCCHHHHHHHHHHHHH
Q 027503          152 METSAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ++|||++|.||+++|+.++++++
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999998874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=216.79  Aligned_cols=161  Identities=34%  Similarity=0.471  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .|||+|+|++|||||||+++|+++.+...+.+|.+... ......++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999999888888886544 45677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      ||+++++++..+..|+..+....  ..++|++||+||+|+.+.+.++.++++.++..++++|+++||++|.||+++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998876654  3568999999999998888899999999999999999999999999999999998


Q ss_pred             HHHH
Q 027503          170 INQI  173 (222)
Q Consensus       170 ~~~i  173 (222)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=212.83  Aligned_cols=163  Identities=34%  Similarity=0.536  Sum_probs=149.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+ +........++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999999999999999888877775 4556777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.++..+..|+..+.... ..++|++||+||+|+.+.+.+..++++.++...+++|+++||++|.||+++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999998887654 4568999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027503          170 INQIH  174 (222)
Q Consensus       170 ~~~i~  174 (222)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-34  Score=211.43  Aligned_cols=163  Identities=30%  Similarity=0.400  Sum_probs=142.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      ..||+|+|++|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888888875 45556778889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      ||+++++||+.+..|+..+......++|++||+||+|+.+.            +.++.++++.++...+ ++|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877655544444456999999999999642            4577889999999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~~  175 (222)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=210.58  Aligned_cols=164  Identities=33%  Similarity=0.498  Sum_probs=144.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|.++.|...+.||.+.++. ..+..++..+.+.+||++|.+.+. ....++..+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            589999999999999999999999999888898877654 445678888999999999988764 466788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC-HHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN-VEDAFLQM  169 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l  169 (222)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.++.++++.++..++++|+++||++|.| |.++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998877665543 45699999999999988788999999999999999999999999985 99999999


Q ss_pred             HHHHHHhh
Q 027503          170 INQIHQTT  177 (222)
Q Consensus       170 ~~~i~~~~  177 (222)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887665

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=209.20  Aligned_cols=163  Identities=33%  Similarity=0.521  Sum_probs=147.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+... ...+..++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            678999999999999999999999999888888876544 4666788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      |||++++.+|+.+..|+..+.+.. ...+|++||+||+|+.+......+++..++.. .+++|+++||++|.||.++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998887654 45689999999999988888888999999887 4689999999999999999999


Q ss_pred             HHHHHH
Q 027503          169 MINQIH  174 (222)
Q Consensus       169 l~~~i~  174 (222)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998774

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=209.53  Aligned_cols=162  Identities=44%  Similarity=0.765  Sum_probs=150.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC---CCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH---SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ  168 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  168 (222)
                      ||++++.+++.+..|+..+........|+++|+||+|+.+   .+.+..++++.+++..+++|+++||++|.||+++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888777777799999999999854   3678889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027503          169 MINQI  173 (222)
Q Consensus       169 l~~~i  173 (222)
                      |++++
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-35  Score=216.34  Aligned_cols=162  Identities=32%  Similarity=0.580  Sum_probs=142.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      -.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999998889999999988888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI  170 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  170 (222)
                      |||++++++|+.+..|+..+..... ++|+++|+||+|+......  ++...++...+++|+++||++|.||.++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999998877654 4999999999999764433  345678888999999999999999999999999


Q ss_pred             HHHHH
Q 027503          171 NQIHQ  175 (222)
Q Consensus       171 ~~i~~  175 (222)
                      +.+..
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=207.59  Aligned_cols=163  Identities=33%  Similarity=0.533  Sum_probs=147.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+.... ..+...+..+.+.+||++|.+.+...+..++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            5699999999999999999999999998888888876655 446678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM  169 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  169 (222)
                      |||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+ +.+..++++.++..++++|+++||++|.||+++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987765 35689999999999964 6677889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027503          170 INQIHQ  175 (222)
Q Consensus       170 ~~~i~~  175 (222)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=208.12  Aligned_cols=164  Identities=45%  Similarity=0.799  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN  171 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  171 (222)
                      ||++++.+++.+..|+..+........|++++++|.|+.. +....+++..++..++++|++|||++|.||.++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888888877799999999999854 667788999999999999999999999999999999999


Q ss_pred             HHHHh
Q 027503          172 QIHQT  176 (222)
Q Consensus       172 ~i~~~  176 (222)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-33  Score=206.31  Aligned_cols=169  Identities=46%  Similarity=0.742  Sum_probs=154.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      +.-..+||+|+|++|||||||+++|.++.+.....++.+.......+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            33467899999999999999999999999999988888888888889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      +++|||++++.++..+..|+..+.... ....|+++++||.|.. .+.+...+++.++..++++|+++||++|.|++++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999887654 4568899999999975 47788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027503          167 LQMINQIHQTT  177 (222)
Q Consensus       167 ~~l~~~i~~~~  177 (222)
                      +++++.+.+..
T Consensus       162 ~~l~~~l~~~p  172 (177)
T d1x3sa1         162 EELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHccCc
Confidence            99999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=203.66  Aligned_cols=167  Identities=35%  Similarity=0.671  Sum_probs=148.2

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG   87 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (222)
                      -++..+||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|...+...+..++..+|+
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            35678999999999999999999999999998998999888888899999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCH
Q 027503           88 ALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNV  162 (222)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  162 (222)
                      +++++|.+++.+++.+..|+..+....    ...+|++||+||+|+.+ +.+..++++.++...+ ++|+++||++|.||
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            999999999999999999998876653    24689999999999964 6788999999998864 89999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027503          163 EDAFLQMINQIHQ  175 (222)
Q Consensus       163 ~~~~~~l~~~i~~  175 (222)
                      +++|++|++.++.
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8e-33  Score=207.48  Aligned_cols=171  Identities=35%  Similarity=0.627  Sum_probs=152.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCCCHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ||.+++.++..+..|+..+....    ...+|+++|+||+|+.+ +.+..++...++. ..+++|++|||++|.||.++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998886653    24589999999999866 5566677777765 457899999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhh
Q 027503          167 LQMINQIHQTTIQKSLC  183 (222)
Q Consensus       167 ~~l~~~i~~~~~~~~~~  183 (222)
                      ++|++.+.+.+.+.+..
T Consensus       161 ~~l~~~i~~~~~~~~~~  177 (184)
T d1vg8a_         161 QTIARNALKQETEVELY  177 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccc
Confidence            99999998877766554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-33  Score=205.79  Aligned_cols=165  Identities=30%  Similarity=0.407  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCC---hhhhhhhhHhhhcCCc
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG---QERFRAITSSYYRGAL   86 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d   86 (222)
                      ..|||+|+|++|||||||+++|.+..+.. ...++.+.+.....+.+++....+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            35899999999999999999999876543 3456667778888899999999999999875   4433  5677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503           87 GALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA  165 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  165 (222)
                      ++|+|||++++.+++.+..|+..+.... ...+|++||+||+|+.+.+.++.++++.++..++++|+++||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998886653 456999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027503          166 FLQMINQIHQTT  177 (222)
Q Consensus       166 ~~~l~~~i~~~~  177 (222)
                      |+.|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999887654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-33  Score=206.88  Aligned_cols=164  Identities=29%  Similarity=0.488  Sum_probs=142.2

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      .++.+||+|+|++|||||||+++|+.+.|...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999988888875 44556678899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEE
Q 027503           89 LLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMET  154 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  154 (222)
                      ++|||++++.+|+++.. |...+.. ...++|++||+||+|+.+.            ......++..++...+ ++|++|
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~  159 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence            99999999999999876 4444544 4455999999999998542            3456677888888877 799999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 027503          155 SAMQNLNVEDAFLQMINQIH  174 (222)
Q Consensus       155 Sa~~~~gi~~~~~~l~~~i~  174 (222)
                      ||++|.||.++|+.|++.++
T Consensus       160 SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         160 SALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             CTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-32  Score=202.40  Aligned_cols=160  Identities=38%  Similarity=0.655  Sum_probs=145.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhhhcCCcEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-ITSSYYRGALGAL   89 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i   89 (222)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+...........+....+.+||++|...+.. .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            478999999999999999999999999999999998888889999999999999999999887654 5678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc---CCCHHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDA  165 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  165 (222)
                      +|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.++.++++.++..++++|++|||++   +.||.++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999887764 45799999999999988888999999999999999999999986   5699999


Q ss_pred             HHHHH
Q 027503          166 FLQMI  170 (222)
Q Consensus       166 ~~~l~  170 (222)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-33  Score=205.27  Aligned_cols=166  Identities=38%  Similarity=0.683  Sum_probs=132.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.......... +.....+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888888777766555554 4445678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHHcC-CeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHS-REVNEEEGKILAETEG-LYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  164 (222)
                      |||++++.+|..+..|+..+....    ...+|++||+||+|+.+. +.++.++++.++...+ ++|+++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999999886653    246899999999999764 3477888999998886 7899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027503          165 AFLQMINQIHQTT  177 (222)
Q Consensus       165 ~~~~l~~~i~~~~  177 (222)
                      +|++|++.+.+++
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-32  Score=202.56  Aligned_cols=163  Identities=28%  Similarity=0.404  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|..+.++..+.|+.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999888888774 44556677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      ||+++++||+.+..|+.........++|+++||||+|+.+            .+.++.+++..+++..+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988765554444444699999999999853            35678899999999987 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027503          159 NL-NVEDAFLQMINQIHQ  175 (222)
Q Consensus       159 ~~-gi~~~~~~l~~~i~~  175 (222)
                      |. |++++|+.+++.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=191.93  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=138.1

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+++|++|||||||+++|.++.+... .++.+ +.+...+.+++..+.+.+|||+|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            579999999999999999999999998554 34443 444577888999999999999998754     47889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCC--CCCCCHHHHHHHHHH-cCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTH--SREVNEEEGKILAET-EGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~  164 (222)
                      |||++++.||+.+..|+..+....   ...+|+++|+||.|+..  .+.++.+++..++.. .+++|++|||++|.|+.+
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999998886654   35579999999888753  456778888888655 568999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhh
Q 027503          165 AFLQMINQIHQTTIQKS  181 (222)
Q Consensus       165 ~~~~l~~~i~~~~~~~~  181 (222)
                      +|..+++.+...+.++.
T Consensus       157 ~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence            99999999988776554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.8e-30  Score=190.01  Aligned_cols=156  Identities=22%  Similarity=0.406  Sum_probs=127.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV   91 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   91 (222)
                      .+||+|+|++|||||||+++|.++.+...+.||.+.+..  .+..++  +.+.+||+||++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            689999999999999999999999998888887765543  455555  6899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCCeEEEEccccCCCHHHHH
Q 027503           92 YDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETEGLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ||+++..++..+..|+..+... ...++|++||+||.|+.+.... .+....+    +...+++++++||++|.|+.++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-KELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH-HHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            9999999999988887766443 3456999999999998653321 2222222    22345689999999999999999


Q ss_pred             HHHHHH
Q 027503          167 LQMINQ  172 (222)
Q Consensus       167 ~~l~~~  172 (222)
                      ++|++.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=4.5e-29  Score=183.52  Aligned_cols=158  Identities=20%  Similarity=0.348  Sum_probs=123.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|+|++|||||||+++|.+..+. ...++.+..  ...+...+  +.+.+||+||++.+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            3689999999999999999999987763 445655443  33455555  688999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHH
Q 027503           91 VYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |||+++..++..+..++..+ ......++|++||+||+|+.+....  ++.....     ...++++++|||++|+|+.+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999998887766554 3334466999999999999754332  3322221     12346799999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          165 AFLQMINQIHQ  175 (222)
Q Consensus       165 ~~~~l~~~i~~  175 (222)
                      +|++|++.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=1.8e-29  Score=187.51  Aligned_cols=159  Identities=25%  Similarity=0.375  Sum_probs=124.6

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL   86 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (222)
                      ...++.+||+++|++|||||||+++|.+..+.... ++.+  .....+...+  +.+.+||++|.+.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            34567899999999999999999999988764332 3333  3334455555  67899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEccccCC
Q 027503           87 GALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKI-----LAETEGLYFMETSAMQNL  160 (222)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  160 (222)
                      ++++|||++++.++..+..|+..+... ...++|++||+||+|+.+...  .....+     ++....+++++|||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999988877665443 345689999999999975432  222221     222345689999999999


Q ss_pred             CHHHHHHHHHHH
Q 027503          161 NVEDAFLQMINQ  172 (222)
Q Consensus       161 gi~~~~~~l~~~  172 (222)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=4.7e-30  Score=191.86  Aligned_cols=162  Identities=20%  Similarity=0.331  Sum_probs=123.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      ..+.+||+++|++|||||||+++|.+..+... .+|.+...  ......+  +.+.+||++|++.+..++..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            45689999999999999999999988776433 35554443  3334444  6889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEccccCCCH
Q 027503           89 LLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKI-----LAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ++|+|++++.++..+..|+..+.. ....+.|++||+||+|+.+..  +.++...     .+...++++++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999988887765433 334669999999999986422  2333222     22334578999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027503          163 EDAFLQMINQIHQTT  177 (222)
Q Consensus       163 ~~~~~~l~~~i~~~~  177 (222)
                      +++|++|++.+.+++
T Consensus       167 ~e~~~~l~~~i~~~~  181 (182)
T d1moza_         167 TEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999987654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=185.08  Aligned_cols=158  Identities=20%  Similarity=0.363  Sum_probs=121.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+++|++|||||||+++|....+.. ..++.+..  ........  +.+.+||+||...+...+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            356999999999999999999998877533 22333333  23333433  68899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHH----HHHHcCCeEEEEccccCCCHHH
Q 027503           90 LVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKI----LAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +|+|+++..++..+..|+..+.. ......|++||+||+|+.+.... .+....    .+...++++++|||++|+||.+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH-HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999998887766544 33456999999999999653221 122222    2223456799999999999999


Q ss_pred             HHHHHHHHH
Q 027503          165 AFLQMINQI  173 (222)
Q Consensus       165 ~~~~l~~~i  173 (222)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=173.04  Aligned_cols=155  Identities=20%  Similarity=0.266  Sum_probs=121.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY   92 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   92 (222)
                      +||+|+|++|||||||+++|.++++..........     ....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999998876554333221     1223334478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503           93 DITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEG----KILAETEGLYFMETSAMQNLNVEDAFL  167 (222)
Q Consensus        93 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~~~~  167 (222)
                      |.+++.++..+..|+..+... ....+|+++++||.|+.+.... .+..    ..++...+++++++||++|+|+.++|+
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~  154 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD  154 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH-HHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHH
Confidence            999999999988877766543 3456899999999998753322 1211    223344567899999999999999999


Q ss_pred             HHHHHH
Q 027503          168 QMINQI  173 (222)
Q Consensus       168 ~l~~~i  173 (222)
                      +|++++
T Consensus       155 ~l~~~l  160 (160)
T d1r8sa_         155 WLSNQL  160 (160)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=164.14  Aligned_cols=158  Identities=22%  Similarity=0.351  Sum_probs=115.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+|+|.+|||||||+++|.+..+.... ++.+.  ........+  ..+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccce--eEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            35689999999999999999999998765332 33322  223334444  67899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCCeEEEEccccCCCHHH
Q 027503           90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +++|.++..++.....++...... .....|+++|+||+|+...... .+....+    +...+++|+++||++|+|+++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH-HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            999999999988876655444332 3456999999999998654321 2222222    223457899999999999999


Q ss_pred             HHHHHHHHH
Q 027503          165 AFLQMINQI  173 (222)
Q Consensus       165 ~~~~l~~~i  173 (222)
                      +|++|++.+
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=3.8e-24  Score=156.60  Aligned_cols=160  Identities=22%  Similarity=0.336  Sum_probs=122.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+.+||+|+|.+|||||||+++|.++.+.... ++.+  ........++  ..+.+||.+|.+.+.......+...++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   77 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhh
Confidence            45699999999999999999999999875432 3332  3333444444  57899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHHHcCCeEEEEccccCCCHHH
Q 027503           90 LVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGK----ILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      +++|+.+..++.....++.. +........|+++++||.|+.+... ..+...    .++...+++|+++||++|.|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            99999998888777665444 3333445689999999999975332 222222    23444568899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027503          165 AFLQMINQIHQ  175 (222)
Q Consensus       165 ~~~~l~~~i~~  175 (222)
                      +|++|++.+.+
T Consensus       157 ~~~~l~~~l~~  167 (169)
T d1upta_         157 AMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999887754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.7e-24  Score=158.36  Aligned_cols=158  Identities=21%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhH
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITS   79 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~   79 (222)
                      +.+.-.|+|+|.+|||||||+|+|++..... ...+..+...........+  ..+.+|||||....        .....
T Consensus         2 ~~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~   79 (178)
T d1wf3a1           2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVY   79 (178)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             CccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccc
Confidence            4566689999999999999999999876533 2334444455555555655  46899999996432        23334


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503           80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQ  158 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  158 (222)
                      .++..+|++++|+|++++..... ..|...++... .+.|+++|+||+|+....   .+....+....+ ..++++||++
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTC
T ss_pred             cccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCC
Confidence            56789999999999998755433 34455554443 348999999999986532   333445555554 5789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQI  173 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i  173 (222)
                      |.|+++++++|++.+
T Consensus       155 ~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         155 ERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999987643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.2e-25  Score=165.90  Aligned_cols=160  Identities=16%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|||..|||||||+++|....+.  +.||.|.+..  .+..  ..+.+.+||++|++.+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EEEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EEec--cceeeeeccccccccccccccccccccceeeE
Confidence            4689999999999999999999888763  5688877654  2333  33678999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC----------------CCCHHHHHHH
Q 027503           91 VYDITRRA-----------TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR----------------EVNEEEGKIL  143 (222)
Q Consensus        91 v~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~~  143 (222)
                      ++|.++..           .++....|...+......+.|+++++||.|+....                .........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99988753           34556667777777666679999999999974211                1122222222


Q ss_pred             HH----------HcCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          144 AE----------TEGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       144 ~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ..          .+.+.++++||++|.||.++|+.+.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          1235688999999999999999998888754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.1e-23  Score=158.01  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=116.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+|||..|||||||+++|....++..+     .  ....+....  ..+.+||++|++.+..++..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            4789999999999999999999987765332     2  223444444  688999999999999999999999999999


Q ss_pred             EEeCCChhhHH-----------HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC---------------CCCCHHHHHHH-
Q 027503           91 VYDITRRATFE-----------NTKKWLRELREFCSSCMAIVLVGNKSDLTHS---------------REVNEEEGKIL-  143 (222)
Q Consensus        91 v~d~~~~~s~~-----------~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~-  143 (222)
                      |+|+++..++.           ....|...+........|+++++||+|+...               .......+..+ 
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999877552           2334555555555567899999999986311               11222222221 


Q ss_pred             ----HHH------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          144 ----AET------EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       144 ----~~~------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                          ...      ..+++++|||++|.||+++|+.+.+.+.+.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                111      235688999999999999999998877643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.3e-24  Score=157.28  Aligned_cols=150  Identities=21%  Similarity=0.226  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhhhc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITSSYYR   83 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   83 (222)
                      +||+++|.+|||||||+|+|++..... ...+..+.+.....+...+  ..+.++|+||....        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999877543 3334444445555666666  46789999995422        123446678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|++++++|..+..++.....|...+.... .++|+++|+||+|+.......       ....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            9999999999999887777666655555444 458999999999986533211       12245789999999999999


Q ss_pred             HHHHHHHHH
Q 027503          164 DAFLQMINQ  172 (222)
Q Consensus       164 ~~~~~l~~~  172 (222)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.3e-23  Score=148.88  Aligned_cols=151  Identities=21%  Similarity=0.293  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD   93 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   93 (222)
                      ||+++|++|||||||+++|.++.+.. ..|+.+....  .....+  ..+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--EeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 3455543333  333333  567899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH------------HHcCCeEEEEccccCC
Q 027503           94 ITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA------------ETEGLYFMETSAMQNL  160 (222)
Q Consensus        94 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~  160 (222)
                      .++..++.....|+...... .....|+++++||.|+....  ...+.....            ...++++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999888877766665443 34668999999999986422  222222221            1233579999999999


Q ss_pred             CHHHHHHHHHH
Q 027503          161 NVEDAFLQMIN  171 (222)
Q Consensus       161 gi~~~~~~l~~  171 (222)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=4.8e-23  Score=153.08  Aligned_cols=157  Identities=17%  Similarity=0.116  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcCCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRGAL   86 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d   86 (222)
                      .|+|+|.+|||||||+|+|++........+..+........... ....+.+|||||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999876544444444444433333332 224688999999432       1123345678899


Q ss_pred             EEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503           87 GALLVYDITRRA--TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus        87 ~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      ++++++|.....  .+.....|+...... ..++|+++|+||+|+.+.+.  .+.........+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986542  333333333322111 12379999999999976432  2334455566788999999999999999


Q ss_pred             HHHHHHHHHH
Q 027503          165 AFLQMINQIH  174 (222)
Q Consensus       165 ~~~~l~~~i~  174 (222)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988877764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.6e-22  Score=146.48  Aligned_cols=155  Identities=20%  Similarity=0.231  Sum_probs=102.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhhhc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITSSYYR   83 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   83 (222)
                      .|+|+|++|||||||+++|++..... ...+..+.......+...+  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            68999999999999999999866532 2223333333344455544  5689999999421         2334556678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503           84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE  163 (222)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (222)
                      .+|+++++++.++...... ..++..+....   +|+++|+||+|+.+.  ...+....+......+++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~~---~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKST---VDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHHT---CCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccccc---ccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999887655433 44555555443   799999999998642  11222233333344568999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027503          164 DAFLQMINQIHQT  176 (222)
Q Consensus       164 ~~~~~l~~~i~~~  176 (222)
                      +++++|++.+.+.
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=3.9e-22  Score=148.09  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC-------CcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-------TIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY   82 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   82 (222)
                      .+.++|+++|++++|||||+|+|++.........       ..+.......+...+  ..+.++|+||+..+.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            4678999999999999999999986432211111       111111122233344  4678999999999988888899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH----cCCeEEEEcc
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAET----EGLYFMETSA  156 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~Sa  156 (222)
                      ..+|++++++|+.++....... .+..+..   .++|+++|+||+|+.+.....  .+..+.+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            9999999999999865433322 2223333   348999999999987632211  1111222221    2368999999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i~~  175 (222)
                      ++|.|++++++.|++.+-+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.6e-22  Score=152.23  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=109.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL   90 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (222)
                      +.+||+++|++|||||||+++|.   +...+.||.|....  .+...+  ..+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            46899999999999999999993   45566788876543  445544  678999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCC----------------CCCCHHHHHHH
Q 027503           91 VYDITRRAT----------FENTKKWLREL-REFCSSCMAIVLVGNKSDLTHS----------------REVNEEEGKIL  143 (222)
Q Consensus        91 v~d~~~~~s----------~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~----------------~~~~~~~~~~~  143 (222)
                      +++.++..+          ++....|+..+ ......++|++|++||+|+.+.                .....+.+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987543          33333344433 3333456999999999997421                11122333333


Q ss_pred             HHH-----------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          144 AET-----------EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       144 ~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ...           ..+.++++||+++.+|.++|+.+.+.+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            222           235678899999999999999988877654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=8.4e-22  Score=146.10  Aligned_cols=157  Identities=20%  Similarity=0.268  Sum_probs=112.3

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL   89 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (222)
                      .+..||+|+|++|||||||+++|.+..+... .++.+.+.  ..+..++  ..+.+||+.+...+...+..+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5678999999999999999999999886543 34443333  3345555  46789999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027503           90 LVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----------------EGLYF  151 (222)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  151 (222)
                      +++|+++...+.....++..... ....+.|+++++||.|+...  ............                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888876654444333 33466999999999998643  333333333321                 23469


Q ss_pred             EEEccccCCCHHHHHHHHHHHH
Q 027503          152 METSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ++|||++|+|++|+|+||++.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=3.6e-21  Score=143.32  Aligned_cols=159  Identities=23%  Similarity=0.156  Sum_probs=105.6

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------------hhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------------FRAI   77 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------~~~~   77 (222)
                      ..+||+|+|.+|||||||+|+|++..... ...+..+.......+..++  ..+.++|+||...            ....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            36999999999999999999999866422 2233333344444566666  4578999999542            2234


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEE
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFM  152 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~  152 (222)
                      ....+..+|++++|+|++.+..... ..++..+...   +.|+++|+||+|+.........+.......     ...+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            4556788999999999987644222 3344444433   389999999999875444333333322222     235799


Q ss_pred             EEccccCCCHHHHHHHHHHHHHH
Q 027503          153 ETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       153 ~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ++||++|.|++++++.|.+.+..
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998665543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=8.9e-22  Score=143.17  Aligned_cols=148  Identities=24%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------h-hhhhHhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------F-RAITSSYY   82 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~-~~~~~~~~   82 (222)
                      +||+|+|.+|||||||+|+|++..... ...+..+.......+...+  ..+.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999866432 3334444444555566666  5688999999421        1 11233446


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV  162 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (222)
                      ..+|++++|+|++++........+. .+     ...|+++++||+|+.+...  .+... .....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~~--~~~~~-~~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKIN--EEEIK-NKLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCCC--HHHHH-HHHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchhh--hHHHH-HHhCCCCcEEEEECCCCCCH
Confidence            7899999999999987655433221 11     2378999999999976432  22222 22234578999999999999


Q ss_pred             HHHHHHHHH
Q 027503          163 EDAFLQMIN  171 (222)
Q Consensus       163 ~~~~~~l~~  171 (222)
                      ++++++|.+
T Consensus       150 ~~L~~~I~k  158 (160)
T d1xzpa2         150 EKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.2e-21  Score=145.68  Aligned_cols=153  Identities=20%  Similarity=0.183  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh---------------hhhhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------------RFRAIT   78 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------------~~~~~~   78 (222)
                      .|+|+|.+|||||||+|+|++........+..+.+.  ..+...+    +.++||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998876555455444433  3334433    5789999942               111233


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHH-------HHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---
Q 027503           79 SSYYRGALGALLVYDITRRATFENTKKW-------LRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG---  148 (222)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---  148 (222)
                      ...++.+|++++|+|..+.........+       ...+......++|+++|+||+|+.+...   .....+.....   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~  152 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPL  152 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH---HHHHHHHHHHTCCG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHH---HHHHHHHHHhcccc
Confidence            4556789999999998765322211100       0111222223589999999999864322   22222222222   


Q ss_pred             ----CeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          149 ----LYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       149 ----~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                          ..++++||++|.|+++++++|.+.+-+
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                248899999999999999999887764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=2.6e-21  Score=148.83  Aligned_cols=160  Identities=20%  Similarity=0.200  Sum_probs=102.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE----------------ECCeEEEEEEEeCCChhhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR----------------VGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      ++.|+|+|++++|||||+++|++...........+.........                +......+.++||||+..|.
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~   84 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccc
Confidence            34599999999999999999987543222111111111111111                12223468999999999988


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-------------HH----
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-------------EE----  138 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~~----  138 (222)
                      ......+..+|++|+|+|+.++-.... ...+..+...   ++|++||+||+|+.+.....             ..    
T Consensus        85 ~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          85 TLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             ccchhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            888888899999999999988644333 2333334433   48999999999987533211             00    


Q ss_pred             HH---H----HHHHH--------------cCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          139 EG---K----ILAET--------------EGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       139 ~~---~----~~~~~--------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ..   .    .+...              ..++++++||.+|.|++++++.|.....+
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00   0    00000              01468999999999999999887776543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.5e-20  Score=141.09  Aligned_cols=157  Identities=13%  Similarity=0.164  Sum_probs=95.8

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hh---h
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RF---R   75 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~---~   75 (222)
                      .+...+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|..          ..   .
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            34556899999999999999999998653222222222222222233332   33456666521          11   1


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeE
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET----EGLYF  151 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~  151 (222)
                      ......+..+|++++++|++++..... ..++..+...   ++|+++|+||+|+....... +....+...    ...++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccccc-cccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCE
Confidence            123344567899999999987643222 3344555544   38999999999986543322 222223222    44679


Q ss_pred             EEEccccCCCHHHHHHHHHHHH
Q 027503          152 METSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       152 ~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      +.+||++|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999988776

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=2.9e-21  Score=143.82  Aligned_cols=157  Identities=15%  Similarity=0.089  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hhh---hHhhhcCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----RAI---TSSYYRGA   85 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~   85 (222)
                      .+|+|+|.+|||||||+|+|.+........+..+...........+. ..+.+|||||....    ..+   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36999999999999999999987755444444444444444444332 36789999996321    111   22334678


Q ss_pred             cEEEEEEeCCChhhHHHHH--HHHHHHHHH---cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEcccc
Q 027503           86 LGALLVYDITRRATFENTK--KWLRELREF---CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE--GLYFMETSAMQ  158 (222)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~--~~~~~l~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  158 (222)
                      +.++++++...........  .+.......   ...++|+++|+||+|+.+..    +....+....  +.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            8888888776543222211  111112222   22458999999999987532    2233343333  57899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027503          159 NLNVEDAFLQMINQIH  174 (222)
Q Consensus       159 ~~gi~~~~~~l~~~i~  174 (222)
                      |.|++++++.+.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999887763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.9e-21  Score=147.29  Aligned_cols=161  Identities=15%  Similarity=0.186  Sum_probs=115.5

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA   88 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (222)
                      +.+.+||++||+.|||||||+++|....+    .||.|...  ..+.+++  +.+.+||++|++.++..|..++.+++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccce
Confidence            34679999999999999999999976654    46666543  4456665  6889999999999999999999999999


Q ss_pred             EEEEeCCChh----------hHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC----C------------------
Q 027503           89 LLVYDITRRA----------TFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHSRE----V------------------  135 (222)
Q Consensus        89 i~v~d~~~~~----------s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~------------------  135 (222)
                      ++++|.++..          ...+. ..|...+....-.++|++|++||+|+.+++.    .                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            9999988643          22222 2233333333335699999999999853210    0                  


Q ss_pred             --------CHHHHHHH-----HHH--------cCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503          136 --------NEEEGKIL-----AET--------EGLYFMETSAMQNLNVEDAFLQMINQIHQTT  177 (222)
Q Consensus       136 --------~~~~~~~~-----~~~--------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  177 (222)
                              ....+..+     .+.        ..+..+++||.++.+|+.+|+.+.+.+.+..
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                    01222222     211        2245678999999999999999887777554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.3e-20  Score=138.25  Aligned_cols=118  Identities=16%  Similarity=0.274  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhhhcCCcEEEEEE
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-AITSSYYRGALGALLVY   92 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~   92 (222)
                      +|+|+|++|||||||+++|.++.+.... ++.+.+.....+. .+....+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876543 5665555433332 3445689999999998875 56788889999999999


Q ss_pred             eCCChhhH-HHHHHHHHHH-HHH--cCCCCeEEEEEeCCCCCCCC
Q 027503           93 DITRRATF-ENTKKWLREL-REF--CSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        93 d~~~~~s~-~~~~~~~~~l-~~~--~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      |+++..++ .....|+..+ ...  ....+|++||+||+|+.+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99997654 4444444433 222  23558999999999997643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=9.1e-20  Score=136.92  Aligned_cols=162  Identities=18%  Similarity=0.157  Sum_probs=105.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---CCCcceee--EEEEEE-------------------ECCeEEEEE
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---KPTIGVEF--AYRNIR-------------------VGDKLIKAQ   64 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---~~~~~~~~--~~~~~~-------------------~~~~~~~~~   64 (222)
                      +...++|+++|+.++|||||+++|++.......   ....+...  ......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999864321111   11111111  111111                   011235689


Q ss_pred             EEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH
Q 027503           65 IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKI  142 (222)
Q Consensus        65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~  142 (222)
                      ++||||+..|.......+..+|++++|+|+.++.........+..+.....  .++++++||+|+.+.....  ......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~--~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ--KNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcC--ccceeeeecccchhhHHHHHHHHHHHH
Confidence            999999999988888888999999999999986433333444444444431  4578889999987632211  112223


Q ss_pred             HHHHc---CCeEEEEccccCCCHHHHHHHHHHH
Q 027503          143 LAETE---GLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       143 ~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      +....   .++++++||++|+|++++++.+.+.
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33322   2689999999999999998887664

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=4.5e-19  Score=134.13  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCC---CCCcceee--EEEEEEE------------------------CCeEEE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDS---KPTIGVEF--AYRNIRV------------------------GDKLIK   62 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~---~~~~~~~~--~~~~~~~------------------------~~~~~~   62 (222)
                      -++|+++|+.++|||||+++|++.......   ......+.  ....+..                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            369999999999999999999863211000   00000000  0011100                        112246


Q ss_pred             EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HHH
Q 027503           63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EEG  140 (222)
Q Consensus        63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~  140 (222)
                      +.++|+||+..|.......+..+|++|+|+|+.++..-...+..+..+....  ..|++|++||+|+.+......  ...
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHHH
Confidence            8999999999998888888889999999999988632222233333333332  147888899999976332111  111


Q ss_pred             HHHHHHc---CCeEEEEccccCCCHHHHHHHHHHH
Q 027503          141 KILAETE---GLYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       141 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      ..+....   +++++++||++|.|++++++.+...
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            2222222   3689999999999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.79  E-value=2.5e-19  Score=134.28  Aligned_cols=155  Identities=17%  Similarity=0.111  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc----------------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE----------------FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR   75 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   75 (222)
                      .++|+++|+.++|||||+++|+...                .......  +.+.......+......+.++||||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~r--giTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERAR--GITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEET--TEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCC--CccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            4799999999999999999987410                0111122  333333334444444678999999999998


Q ss_pred             hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH---HHHHHHHHHcC----
Q 027503           76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE---EEGKILAETEG----  148 (222)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~----  148 (222)
                      ......+..+|++++|+|+.++..-+ ..+.+..+..+..  .|++|++||+|+........   .+.+.+....+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~~--~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIGV--EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTTC--CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhcC--CcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88888899999999999999874422 2333344444331  57888999999875322111   12233333333    


Q ss_pred             -CeEEEEccccC----------CCHHHHHHHHHH
Q 027503          149 -LYFMETSAMQN----------LNVEDAFLQMIN  171 (222)
Q Consensus       149 -~~~~~~Sa~~~----------~gi~~~~~~l~~  171 (222)
                       ++++.+|+++|          .++.++++.+.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence             67999999988          477777766644

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.7e-19  Score=129.60  Aligned_cols=159  Identities=21%  Similarity=0.188  Sum_probs=102.3

Q ss_pred             CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceee-EEEEEEECCeEEEEEEEeCCChhhh---------hhh
Q 027503            8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF-AYRNIRVGDKLIKAQIWDTAGQERF---------RAI   77 (222)
Q Consensus         8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~   77 (222)
                      ++.|.-.|+|+|.+|||||||+|+|++...........+... .......+.  ..+..+|++|....         ...
T Consensus         1 ~~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (179)
T d1egaa1           1 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKA   78 (179)
T ss_dssp             CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             CCccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhc
Confidence            356777899999999999999999998775544333333333 333344444  34567888874321         122


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcc
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSA  156 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  156 (222)
                      .......+++++++.|..+.....  ..+...+.   ....|.++|+||+|..............+....+ .+++++||
T Consensus        79 ~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1          79 ASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TTSCCCCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             cccchhhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeC
Confidence            233445678888888877543221  22222222   3347899999999987644333334444455555 58999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 027503          157 MQNLNVEDAFLQMINQI  173 (222)
Q Consensus       157 ~~~~gi~~~~~~l~~~i  173 (222)
                      ++|.|++++++.|.+.+
T Consensus       154 ~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHhC
Confidence            99999999998887654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=2.9e-17  Score=125.19  Aligned_cols=153  Identities=23%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCc--CC-------------------------------CCCCCCcceeeEE
Q 027503            5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDE--FR-------------------------------LDSKPTIGVEFAY   51 (222)
Q Consensus         5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~   51 (222)
                      -+.++...+||+++|+.++|||||+.+|+...  +.                               .......+.+...
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            45677889999999999999999999996311  10                               0001112223333


Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCC
Q 027503           52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLT  130 (222)
Q Consensus        52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~  130 (222)
                      ..+...+  ..+.++|+||+..|-.....-+..+|++++|+|+.++..-+. ...+..+...   ++| +++++||+|+.
T Consensus        82 ~~~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~~---gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          82 RYFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLN  155 (222)
T ss_dssp             EEEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTT
T ss_pred             EEEeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHHc---CCCEEEEEEEccccc
Confidence            3333333  578999999999998888888999999999999998643332 2222333333   244 77889999997


Q ss_pred             CCCCCCHH----HHHHHHHHcC-----CeEEEEccccCCCHH
Q 027503          131 HSREVNEE----EGKILAETEG-----LYFMETSAMQNLNVE  163 (222)
Q Consensus       131 ~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~  163 (222)
                      +.......    +...+....+     ++|+++||.+|.|+.
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         156 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            64321111    2233444443     468999999999883

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=4.2e-18  Score=128.49  Aligned_cols=140  Identities=17%  Similarity=0.135  Sum_probs=92.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC------CCC-----------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEF------RLD-----------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      .++|+++|++++|||||+++|+...-      ...           .....+.+.....+..++  ..+.|+||||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            47999999999999999999963210      000           011234444545555555  57899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHcC--
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETEG--  148 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~--  148 (222)
                      .......+..+|++|+|+|++++...+... .+..+...   ++| ++|++||+|+.+....-.   .....+....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            988889999999999999999876554433 33444443   255 677799999865322111   12223333322  


Q ss_pred             ---CeEEEEccc
Q 027503          149 ---LYFMETSAM  157 (222)
Q Consensus       149 ---~~~~~~Sa~  157 (222)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               568888875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=9.1e-18  Score=126.67  Aligned_cols=117  Identities=23%  Similarity=0.337  Sum_probs=82.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh----hcCCc
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY----YRGAL   86 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d   86 (222)
                      |.+.|+|+|++|||||||+|+|.+..+.    ++.+.......+..++  ..+.+||+||+..+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            5679999999999999999999998764    3333333333333333  567899999988765544443    44568


Q ss_pred             EEEEEEeCCC-hhhHHHHHHHHH----HHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           87 GALLVYDITR-RATFENTKKWLR----ELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        87 ~~i~v~d~~~-~~s~~~~~~~~~----~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      .+++++|..+ ..+++....|+.    .+......++|+++|+||+|+.+..
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8888888664 555566555553    3345556779999999999987643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.9e-17  Score=120.18  Aligned_cols=164  Identities=13%  Similarity=0.086  Sum_probs=86.5

Q ss_pred             CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-------hhhh
Q 027503            4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-------RFRA   76 (222)
Q Consensus         4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~   76 (222)
                      +..-+.+..++|+|+|.+|||||||+|+|.+...........+................+..++.++..       ....
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence            445667889999999999999999999998876543332222222222222222222122222222211       1111


Q ss_pred             hh---HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH---Hc--C
Q 027503           77 IT---SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE---TE--G  148 (222)
Q Consensus        77 ~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~--~  148 (222)
                      ..   .......+.++.+.+......... ..++..+...   ..++++++||+|+.+..... .....+..   ..  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~-~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGARK-AQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGGCSC
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHHH-HHHHHHHHHHHhhCCC
Confidence            11   222334455666666655433222 2233333333   37899999999987632221 11222222   22  3


Q ss_pred             CeEEEEccccCCCHHHHHHHHHHH
Q 027503          149 LYFMETSAMQNLNVEDAFLQMINQ  172 (222)
Q Consensus       149 ~~~~~~Sa~~~~gi~~~~~~l~~~  172 (222)
                      .+++.+||++|.|++++++.|.+.
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHH
Confidence            578999999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=3.9e-16  Score=122.01  Aligned_cols=115  Identities=20%  Similarity=0.205  Sum_probs=83.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC------------------CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFR------------------LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      ..-+|+++|+.++|||||+.+|+...-.                  .......++......+...+  ..+.|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            4457999999999999999998632110                  11122233444445555655  678999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503           73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH  131 (222)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~  131 (222)
                      .|.......+..+|++|+|+|+.++-......-| .....   .++|.++++||+|...
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTSTT
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEecccccc
Confidence            9999999999999999999999998655554444 33333   3499999999999853

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.63  E-value=3.9e-15  Score=115.97  Aligned_cols=112  Identities=13%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCC------------------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLD------------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      -+|+|+|+.++|||||+.+|+...-...                  .....+.......+...+  .++.++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            4699999999999999999863211000                  012234444555566666  57899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      .......+..+|++|+|+|+.++........| ..+...   ++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            99999999999999999999987665554444 334333   38999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5.1e-16  Score=119.47  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=97.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC--cCC-----------------------------CCCCCCcceeeEEEEEEECCeE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD--EFR-----------------------------LDSKPTIGVEFAYRNIRVGDKL   60 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (222)
                      .++|+++|+.++|||||+.+|+..  ...                             .......+++.....+...+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            489999999999999999998621  100                             00123344444445555555  


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhH------HHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATF------ENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSR  133 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~  133 (222)
                      .++.|+||||+..|-.....-+..+|++|+|+|+..+.--      ......+..+..+.   +| ++|++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~g---v~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG---VRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT---CCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcC---CCeEEEEEECCCCCCCC
Confidence            6889999999999999888999999999999999875210      11222222233322   54 77889999987533


Q ss_pred             CCCH----HHHHHHHHHcC-----CeEEEEccccCCCHHH
Q 027503          134 EVNE----EEGKILAETEG-----LYFMETSAMQNLNVED  164 (222)
Q Consensus       134 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  164 (222)
                      ....    .+...+....+     ++++.+|+..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            2111    22333444333     5689999999988644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.3e-15  Score=116.26  Aligned_cols=149  Identities=17%  Similarity=0.194  Sum_probs=91.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEECCeE
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRVGDKL   60 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   60 (222)
                      .++|+++|+.++|||||+.+|+...-                               ........+.+.....+..+  .
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~--~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--K   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--S
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC--C
Confidence            57999999999999999999853110                               01111222222222233333  3


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFE------NTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.++||||+..|.......+.-+|++|+|+|+.++....      .....+..+.. ... .++++++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~-~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL-DQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC-TTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCC-CceEEEEEcccCCCccc
Confidence            67899999999999999999999999999999999863211      11211222222 222 46788899999864221


Q ss_pred             CC--H----HHHHHHHHHcC-----CeEEEEccccCCCHHH
Q 027503          135 VN--E----EEGKILAETEG-----LYFMETSAMQNLNVED  164 (222)
Q Consensus       135 ~~--~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  164 (222)
                      ..  .    .....+....+     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11  1    11223333332     5789999999998853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=4.8e-15  Score=114.43  Aligned_cols=152  Identities=19%  Similarity=0.099  Sum_probs=81.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCC-------------------------------CCCCCCcceeeEEEEEEECCe
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-------------------------------LDSKPTIGVEFAYRNIRVGDK   59 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   59 (222)
                      ..++|+++|+.++|||||+.+|+...-.                               .......+.+.........+ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            3578999999999999999998521100                               00001111111111222222 


Q ss_pred             EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFE------NTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                       ..+.++|+||+..|..........+|++++|+|+.++.--.      .....+..+.... . .++++++||+|+....
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~-i-~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG-I-NHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT-C-SSEEEEEECTTSTTCS
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC-C-CeEEEEEEcCCCCccc
Confidence             57899999999999988888899999999999998752110      2222222233222 1 2477889999987422


Q ss_pred             CCC--HHH----HHHHHHHc-------CCeEEEEccccCCCHHHHH
Q 027503          134 EVN--EEE----GKILAETE-------GLYFMETSAMQNLNVEDAF  166 (222)
Q Consensus       134 ~~~--~~~----~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  166 (222)
                      ...  .++    ...+....       .++|+++||++|+|+.+++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            111  111    11111111       2579999999999997654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.52  E-value=2.1e-13  Score=105.94  Aligned_cols=125  Identities=12%  Similarity=0.036  Sum_probs=79.5

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhH--
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAITS--   79 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~--   79 (222)
                      ...++|+|+|.+|||||||+|.+++......+ .+..+..........++  ..+.++||||....       .....  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35789999999999999999999997755443 33444455556666776  46899999995321       11111  


Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCC--CCeEEEEEeCCCCCCCCCCCH
Q 027503           80 SYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSS--CMAIVLVGNKSDLTHSREVNE  137 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~Dl~~~~~~~~  137 (222)
                      ......|++++|++++... +..+ ...+..+....+.  -.+++||+||+|.........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            2234668899998887542 2222 2223333333221  157899999999876444443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.7e-13  Score=112.90  Aligned_cols=159  Identities=10%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcc---eeeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG---VEFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYY   82 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~   82 (222)
                      ..++|+|+|.+|||||||+|+|.|...........+   .+.....+...+. ..+.+|||||......     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhh
Confidence            368999999999999999999998654322221111   1111122233222 2478999999653221     233345


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC-------CCCCCHHHH----H----HHHHHc
Q 027503           83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-------SREVNEEEG----K----ILAETE  147 (222)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~----~----~~~~~~  147 (222)
                      ..+|++|++.|..-.  -.+ ..+...+...   ++|+++|.||+|...       ......+..    +    ......
T Consensus       134 ~~~d~~l~~~~~~~~--~~d-~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFK--KND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCC--HHH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCC--HHH-HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            678888888764422  222 2233444443   489999999999531       111122211    1    111222


Q ss_pred             C---CeEEEEcccc--CCCHHHHHHHHHHHHHHh
Q 027503          148 G---LYFMETSAMQ--NLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       148 ~---~~~~~~Sa~~--~~gi~~~~~~l~~~i~~~  176 (222)
                      +   -+++.+|..+  ..|+.++.+.+.+.+-+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3   3578888765  448888888887775443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.2e-13  Score=110.97  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc--C--------------CCCCCCCcceeeEEEEEEE--------------CCeE
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDE--F--------------RLDSKPTIGVEFAYRNIRV--------------GDKL   60 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~   60 (222)
                      ..-+|+|+|+.++|||||+.+|+...  .              ........++......+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            33469999999999999999997211  1              0111112222222222222              3345


Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT  130 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~  130 (222)
                      +.+.++||||+..|.......++.+|++++|+|+.++-......-|.... .   .++|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H---cCCCeEEEEECcccc
Confidence            68999999999999999999999999999999999986655544443333 2   338999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.33  E-value=1.8e-13  Score=104.95  Aligned_cols=110  Identities=13%  Similarity=-0.022  Sum_probs=64.7

Q ss_pred             EEEEEeCCChhhhhhhhHh---h--hcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503           62 KAQIWDTAGQERFRAITSS---Y--YRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR  133 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~  133 (222)
                      .+.++|+||+..+......   .  ....+.+++++|+..   +..+.........+..  ....|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccHH
Confidence            5789999998765332221   1  224568889998764   3333222211111111  1237999999999987532


Q ss_pred             CCCHHH-----------------------HHHH---HH--HcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503          134 EVNEEE-----------------------GKIL---AE--TEGLYFMETSAMQNLNVEDAFLQMINQI  173 (222)
Q Consensus       134 ~~~~~~-----------------------~~~~---~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  173 (222)
                      ......                       ....   ..  ...++++++||++|+|+++++..|.+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            211000                       0000   01  1347899999999999999998877754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=2.2e-11  Score=97.08  Aligned_cols=105  Identities=9%  Similarity=0.021  Sum_probs=64.2

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG  140 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  140 (222)
                      +.+.|+.|.|.-.-   .......+|.+++|..+..++..+.   ....+.+     ++=++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQG---IKKGIFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC---------CCTTHHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhh---hhhhHhh-----hhheeeEeccccccchHHHHHHH
Confidence            45677777774321   2234456899999999988754333   2222333     23488899999876433322222


Q ss_pred             HHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503          141 KILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       141 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  176 (222)
                      ..+...          +..+++.+||.+|.|+++++++|.+.....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            222222          346799999999999999999997765443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=9.1e-11  Score=91.78  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh---
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER---   73 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   73 (222)
                      .+||.|+|.|+||||||+++|.+........|..+.+.....+.+.+.               +..+.++|.||...   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987765555555555544444444332               13588999999431   


Q ss_pred             ----hhhhhHhhhcCCcEEEEEEeC
Q 027503           74 ----FRAITSSYYRGALGALLVYDI   94 (222)
Q Consensus        74 ----~~~~~~~~~~~~d~~i~v~d~   94 (222)
                          ........++++|+++.|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                222345678899999999976

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=8.2e-12  Score=99.73  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             EEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHH
Q 027503           62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEE  139 (222)
Q Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~  139 (222)
                      .+.+++|.|.-..   -..+...+|.+++|.++..++..+..   ...+.+.     +=++|+||+|+.......  ..+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~---k~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGI---KKGLMEV-----ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCC---CHHHHHH-----CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhh---chhhhcc-----ccEEEEEeecccchHHHHHHHHH
Confidence            3455555553211   22456678999999987666443332   2333333     337888999986522111  111


Q ss_pred             HHHHHH-------HcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503          140 GKILAE-------TEGLYFMETSAMQNLNVEDAFLQMINQIHQ  175 (222)
Q Consensus       140 ~~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  175 (222)
                      ......       .+..+++.+||.+|.|++++++.|.+....
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            111111       233579999999999999999888775543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=2.2e-10  Score=90.31  Aligned_cols=86  Identities=17%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER-   73 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~-   73 (222)
                      ..++|.|+|.|+||||||+|+|++... .....|..+.+.....+.+.+.               ...+.++|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            458999999999999999999998764 2344566666554555555432               24788999998432 


Q ss_pred             ------hhhhhHhhhcCCcEEEEEEeCCC
Q 027503           74 ------FRAITSSYYRGALGALLVYDITR   96 (222)
Q Consensus        74 ------~~~~~~~~~~~~d~~i~v~d~~~   96 (222)
                            ........++.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  22345667889999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.5e-10  Score=89.15  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEE----------------------------------
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIR----------------------------------   55 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~----------------------------------   55 (222)
                      ..++|+|+|..++|||||+|+|++..+.+.. .++...-.......                                  
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999998864333 23221111111000                                  


Q ss_pred             ----------------ECCeEEEEEEEeCCChhh-------------hhhhhHhhhcCCcEE-EEEEeCCChhhHHHHHH
Q 027503           56 ----------------VGDKLIKAQIWDTAGQER-------------FRAITSSYYRGALGA-LLVYDITRRATFENTKK  105 (222)
Q Consensus        56 ----------------~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~  105 (222)
                                      ... ...+.++|+||...             ...+...|+...+.+ ++|.+.....+...+..
T Consensus       105 ~~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             CCCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH
Confidence                            000 11478999999432             234566777777754 45666655444344333


Q ss_pred             HHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503          106 WLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus       106 ~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      +..   .......++++|+||+|..+...
T Consensus       184 ~~~---~~~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         184 IAK---EVDPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHH---HHCTTCSSEEEEEECGGGSCTTC
T ss_pred             HHH---HhCcCCCceeeEEeccccccchh
Confidence            433   44445578999999999876433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.01  E-value=7e-10  Score=87.70  Aligned_cols=117  Identities=15%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-CCcceeeEEE--------------------------------------
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSK-PTIGVEFAYR--------------------------------------   52 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~--------------------------------------   52 (222)
                      .++|+|+|..++|||||+|+|+|.++.+... ++...-....                                      
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999988643331 1111000000                                      


Q ss_pred             --------------------EEEECCeEEEEEEEeCCChhh-------------hhhhhHhhhcCCcEEEEEE-eCCChh
Q 027503           53 --------------------NIRVGDKLIKAQIWDTAGQER-------------FRAITSSYYRGALGALLVY-DITRRA   98 (222)
Q Consensus        53 --------------------~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~   98 (222)
                                          .+.... ...+.++|+||...             ...+...|+..++.+++++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                011111 12578999999432             2356778899999877765 433322


Q ss_pred             hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           99 TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        99 s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      .-.....+   +........++++|+||+|..+.
T Consensus       183 ~~~~~~~~---~~~~~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQL---AKEVDPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHH---HHHHCSSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHH---HHHhCcCCCeEEEEEeccccccc
Confidence            22222333   33444445689999999998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=8.7e-10  Score=87.66  Aligned_cols=83  Identities=23%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE----------------------ECCeEEEEEEEeCCC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR----------------------VGDKLIKAQIWDTAG   70 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~Dt~G   70 (222)
                      ++|+++|.|+||||||+|+|.+........|..+.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998776555556554432211110                      112335789999999


Q ss_pred             hhh-------hhhhhHhhhcCCcEEEEEEeCC
Q 027503           71 QER-------FRAITSSYYRGALGALLVYDIT   95 (222)
Q Consensus        71 ~~~-------~~~~~~~~~~~~d~~i~v~d~~   95 (222)
                      ...       ........++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            532       1122334567999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=2.1e-08  Score=77.85  Aligned_cols=59  Identities=27%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ   71 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   71 (222)
                      ....++|+|+|.||||||||+|+|.+....... +..|.+.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            456799999999999999999999997754332 3333333333344443   4799999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=1.5e-07  Score=70.38  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--HcCCeEEEEcc
Q 027503           80 SYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE--TEGLYFMETSA  156 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa  156 (222)
                      -...+.|.+++|+++.+|. +...+.+|+.......   +|.+||+||+||.+...  .+....+..  ..+.+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~---i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE---LETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT---CEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC---CCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecc
Confidence            3457889999999998864 5566676766665554   89999999999976322  122223333  23468999999


Q ss_pred             ccCCCHHHHHHHH
Q 027503          157 MQNLNVEDAFLQM  169 (222)
Q Consensus       157 ~~~~gi~~~~~~l  169 (222)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999988765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.29  E-value=5.6e-06  Score=59.00  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=2.5e-07  Score=69.08  Aligned_cols=58  Identities=22%  Similarity=0.143  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF   74 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (222)
                      ..+|+|++|||||||+|+|.+.....+.      .....++....-+.+++.   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            4689999999999999999875432221      111112222233444432   269999996543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=3.8e-07  Score=68.30  Aligned_cols=86  Identities=14%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEc
Q 027503           80 SYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK---ILAETEGLYFMETS  155 (222)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~S  155 (222)
                      ....+.|.+++|+++.+|. +...+.+++......   +++.+||+||+||.+.... .+...   ......+++++.+|
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHH-HHHHHHHHHHHhhccccceeee
Confidence            3457889999999998764 556666665555444   4889999999999764321 11222   23345689999999


Q ss_pred             cccCCCHHHHHHHH
Q 027503          156 AMQNLNVEDAFLQM  169 (222)
Q Consensus       156 a~~~~gi~~~~~~l  169 (222)
                      +.++.|++++..++
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998877654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=4.4e-06  Score=64.36  Aligned_cols=91  Identities=10%  Similarity=0.080  Sum_probs=63.4

Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccc
Q 027503           78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAM  157 (222)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (222)
                      ....++.+|++|+|+|+.+|.+..+-  .   +..... +.|.++|+||+|+.+.. . .+....+....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~---l~~~~~-~Kp~IlVlNK~DLv~~~-~-~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--M---IEDILK-NKPRIMLLNKADKADAA-V-TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--H---HHHHCS-SSCEEEEEECGGGSCHH-H-HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--H---HHHHHc-CCCeEEEEECccCCchH-H-HHHHHHHHHhcCCccceeecc
Confidence            45578999999999999998765431  1   122222 47999999999997632 1 122233334556789999999


Q ss_pred             cCCCHHHHHHHHHHHHHHh
Q 027503          158 QNLNVEDAFLQMINQIHQT  176 (222)
Q Consensus       158 ~~~gi~~~~~~l~~~i~~~  176 (222)
                      ++.+..++...+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhh
Confidence            9999988887776665544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=7.9e-06  Score=60.92  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +..-++|.|.-|||||||+++++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3455889999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=3.3e-07  Score=68.66  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..+|+|++|||||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            46799999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=7e-06  Score=60.69  Aligned_cols=92  Identities=18%  Similarity=0.052  Sum_probs=50.9

Q ss_pred             EEEEEEeCCChhhhhh----hhHhh---hc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSSY---YR-----GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~~---~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      ..+.|+||+|...+..    ....+   ..     ..+-.++|+|+....  +.+..........    -+--+++||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEeccc
Confidence            3579999999432221    11111   11     246788999987542  2322222222222    23356679999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      -..  .  .-.+.......++|+..++  +|+++++
T Consensus       168 e~~--~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         168 GTA--K--GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GCS--C--TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC--c--ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            532  2  2345666777888887775  5666644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=2.2e-06  Score=63.17  Aligned_cols=91  Identities=16%  Similarity=0.030  Sum_probs=50.2

Q ss_pred             EEEEEEeCCChhhhhhh----hHhh--------hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503           61 IKAQIWDTAGQERFRAI----TSSY--------YRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKS  127 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  127 (222)
                      ..+.|+||+|...+...    ...+        ....+-+++|+|+.... ....+..++..   ..    +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~---~~----~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA---VG----LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH---HC----CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhc---cC----CceEEEecc
Confidence            36789999994432211    1111        12457788999988653 33333322222   21    225567999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      |-....    -.+.......++|+..++  +|+++++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEe--CCCChHh
Confidence            954321    234556777888877776  3555443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1.2e-05  Score=59.25  Aligned_cols=92  Identities=16%  Similarity=0.053  Sum_probs=51.0

Q ss_pred             EEEEEEeCCChhhhhh-----h--hHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           61 IKAQIWDTAGQERFRA-----I--TSSYYR-----GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~-----~--~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                      ..+.|+||+|......     +  ......     ..+-.++|+|+....  +.+..........    -+--+++||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecC
Confidence            3578999999432211     1  111222     246788999987643  2222222222222    12356679999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                      -...    .-.+.......++|+..++  +|++|++
T Consensus       166 e~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            5432    2345566777888887775  6666643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.84  E-value=6.8e-06  Score=60.68  Aligned_cols=92  Identities=13%  Similarity=0.032  Sum_probs=52.8

Q ss_pred             EEEEEEeCCChhhhhh------hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA------ITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS  132 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~  132 (222)
                      ..+.|+||+|...+..      ....+  .-..+-+++|+++.....  .+...... ....  ++ --+++||.|-.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~-~~~~--~~-~~lI~TKlDet~-  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKF-NQAS--KI-GTIIITKMDGTA-  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHH-HHHC--TT-EEEEEECTTSCS-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhh-hccc--Cc-ceEEEecccCCC-
Confidence            3679999999532221      11111  224567888998876532  22222121 2221  12 346689999533 


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503          133 REVNEEEGKILAETEGLYFMETSAMQNLNVED  164 (222)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (222)
                         ..-.+.......++|+..++  +|+++++
T Consensus       168 ---~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ---KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               34566677888899988776  5766654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=7.1e-05  Score=54.90  Aligned_cols=85  Identities=19%  Similarity=0.046  Sum_probs=48.3

Q ss_pred             EEEEEEeCCChhhhhh----hhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503           61 IKAQIWDTAGQERFRA----ITSS--YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE  134 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~  134 (222)
                      ..+.|+||+|......    .+..  .....+-+++|.|...+..-..   ....+.....   +--+++||.|-..   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~~---~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKVG---VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHTC---CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhCC---CCeeEEeecCccc---
Confidence            3678999999443221    1111  1335688899999876632221   2222322221   2246679999432   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 027503          135 VNEEEGKILAETEGLYFMETS  155 (222)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~S  155 (222)
                       ..-.+.......+.|+..++
T Consensus       164 -~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 -RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEC
T ss_pred             -cchHHHHHHHHHCCCEEEEe
Confidence             23445666777888876664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.60  E-value=1.6e-05  Score=56.15  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=23.4

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            56788999999999999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=2.3e-05  Score=55.75  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -+|+|.|++|||||||++.|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.46  E-value=2.4e-05  Score=55.05  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5e-05  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-|+|+|.+|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.32  E-value=5.9e-05  Score=54.32  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +-++|+|+|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=5.8e-05  Score=53.77  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.31  E-value=6.4e-05  Score=54.32  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+.++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.29  E-value=6.5e-05  Score=51.78  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.26  E-value=8.6e-05  Score=53.54  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..++..|+|+|+|||||||+++.|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556889999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.22  E-value=8.3e-05  Score=53.14  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|+|+|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=8.9e-05  Score=52.88  Aligned_cols=23  Identities=17%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.20  E-value=6.5e-05  Score=54.07  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +++|+|+|++||||||+++.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0012  Score=50.37  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----CCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE   72 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   72 (222)
                      .+..-|.|+|+.++|||+|+|.|++..+.-..     ..|.|+-.....+. .+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEeccccc
Confidence            35667999999999999999999986632111     23333332222221 2334578899999954

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=9.9e-05  Score=52.54  Aligned_cols=22  Identities=14%  Similarity=0.376  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988853

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.14  E-value=0.00011  Score=51.46  Aligned_cols=21  Identities=33%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|.|++||||||+++.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00012  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=51.73  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++.|+|+|+|||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00013  Score=51.30  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00028  Score=50.02  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            9 CDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         9 ~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+...-|+++|.||||||||++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999999854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00018  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00019  Score=50.31  Aligned_cols=20  Identities=20%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00027  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00029  Score=52.73  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      +|+|+|+.|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999987643

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0003  Score=49.53  Aligned_cols=21  Identities=24%  Similarity=0.532  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00032  Score=48.98  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      ++|+|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999998653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.79  E-value=0.00033  Score=49.45  Aligned_cols=21  Identities=19%  Similarity=0.161  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.79  E-value=0.0003  Score=49.22  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00036  Score=50.01  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.78  E-value=0.00041  Score=48.62  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +-|.|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999988764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.77  E-value=0.00043  Score=49.39  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...+-|+|-|++|||||||++.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.75  E-value=0.00039  Score=48.70  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.72  E-value=0.00043  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999987643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.00042  Score=49.30  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.00042  Score=52.25  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|+|+.|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5899999999999999998763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00049  Score=48.99  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|+|++||||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999885

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0005  Score=51.06  Aligned_cols=23  Identities=43%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999987643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.65  E-value=0.00049  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            37899999999999999997644

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.65  E-value=0.00048  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            666699999999999998753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.65  E-value=0.00047  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            37899999999999999887643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00051  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            58999999999999999987643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00064  Score=48.83  Aligned_cols=23  Identities=13%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...|+|+|+|||||||++..|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44589999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.62  E-value=0.00053  Score=48.18  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|+|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.61  E-value=0.00067  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      +--|+|.|+||+|||+|++.+.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            445999999999999999998753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00055  Score=49.18  Aligned_cols=20  Identities=40%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|+|++||||+||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.0022  Score=44.51  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -.-|++-|+-|||||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3458889999999999999987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.58  E-value=0.0006  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6789999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00058  Score=52.28  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999998643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.54  E-value=0.00057  Score=49.09  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00075  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00068  Score=50.51  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37999999999999999988754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0007  Score=49.32  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+||+||||+||++.|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.48  E-value=0.00093  Score=52.16  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            35999999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.009  Score=44.03  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..++|.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00067  Score=50.60  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            37899999999999999997744

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.45  E-value=0.00079  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999988754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00042  Score=49.42  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.-|.|.|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.44  E-value=0.00052  Score=51.74  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      +++|+|+.|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999998765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.43  E-value=0.00083  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..++|+|-|++||||||..+.|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.00087  Score=49.64  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ....++|.|+||+||||+++.+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4557999999999999999998753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.41  E-value=0.00054  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++|+|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.001  Score=47.91  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCc
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -+++++|++|+|||++++.|...-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            478999999999999998876533

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.35  E-value=0.00094  Score=49.87  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.34  E-value=0.00088  Score=47.33  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             EE-EEEcCCCCChHHHHHHHhh
Q 027503           14 KA-VMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI-~llG~~~sGKSsli~~l~~   34 (222)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            55 4579999999999998853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.00075  Score=50.11  Aligned_cols=20  Identities=40%  Similarity=0.657  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      ++|+|+.|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            78999999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.0011  Score=49.45  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.0011  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|.|+||+|||++++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999998753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.24  E-value=0.0012  Score=49.84  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999997643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0014  Score=49.71  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .-+++++|++|+|||++++.|...-
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3478999999999999999876543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.0018  Score=46.19  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ++-|+|.|.+||||||+++.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            577999999999999999988643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.15  E-value=0.0015  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+++-|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999865

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.13  E-value=0.0014  Score=49.32  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      ++|+|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            7899999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0014  Score=50.70  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -.|+++||||+|||.|++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999998753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.12  E-value=0.0007  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0019  Score=47.45  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ..++|.|++|+|||++++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.02  E-value=0.055  Score=40.17  Aligned_cols=88  Identities=9%  Similarity=0.085  Sum_probs=52.3

Q ss_pred             EEEEEEeCCChhhhh-hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeE-EEEEeCCCCCCCCCCCH
Q 027503           61 IKAQIWDTAGQERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAI-VLVGNKSDLTHSREVNE  137 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~-ivv~nK~Dl~~~~~~~~  137 (222)
                      +.+.++|+|+.-... .........+|.++++.+. +..++..+......+..... .+.++ -+|.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            467899998744322 2233334567888888776 45566665555555555443 22333 36789887543    24


Q ss_pred             HHHHHHHHHcCCeEEE
Q 027503          138 EEGKILAETEGLYFME  153 (222)
Q Consensus       138 ~~~~~~~~~~~~~~~~  153 (222)
                      +..+.+....+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566777777776544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.01  E-value=0.0026  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +...|++.|+||+|||+|++.+..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0024  Score=47.46  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|.|++|+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999998763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.89  E-value=0.0024  Score=47.62  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      ..-.++|.|++|+|||++++.+...-
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999987643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.88  E-value=0.0023  Score=48.02  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-++|.|+||+|||++++.+...
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHH
Confidence            34556799999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0026  Score=49.14  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=23.0

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .....++-|+|.|++|||||||.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3455678999999999999999988754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0025  Score=46.16  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.68  E-value=0.0026  Score=47.41  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0024  Score=51.89  Aligned_cols=20  Identities=40%  Similarity=0.735  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q 027503           14 KAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~   33 (222)
                      +|+++||+|||||-|+++|.
T Consensus        51 NILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            89999999999999999985

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.0035  Score=45.01  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.61  E-value=0.0033  Score=46.95  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -.|++.|++|+|||+|++.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999985

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0048  Score=44.66  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      .+-|+|.|..||||||+++.|....
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHCC
Confidence            4668999999999999999886543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.56  E-value=0.0036  Score=45.49  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ...-|.|.|.+|||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445699999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0042  Score=47.37  Aligned_cols=27  Identities=15%  Similarity=0.032  Sum_probs=22.2

Q ss_pred             CCCCeeeEEEEEcCCCCChHHHHHHHh
Q 027503            7 EECDYLFKAVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus         7 ~~~~~~~kI~llG~~~sGKSsli~~l~   33 (222)
                      +....++-|+|.|.+|||||||...|.
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            344567899999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0038  Score=45.73  Aligned_cols=22  Identities=14%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999988753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0039  Score=45.52  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0044  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .++|.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.005  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.|++.|+||+|||++++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            34699999999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.26  E-value=0.0074  Score=43.47  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0051  Score=46.15  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-.+++.|+||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0067  Score=43.73  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|-|.+||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.92  E-value=0.0042  Score=49.48  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -+++++|++|||||++++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4579999999999999976653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0079  Score=42.86  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -+.|.|++|+|||+|+..|..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37899999999999999987543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.84  E-value=0.0069  Score=45.60  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-.|++.|++|+|||+|++++...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            446999999999999999998753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.80  E-value=0.01  Score=41.75  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -|+|.|++|+||||++-.|....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.72  E-value=0.007  Score=47.78  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      .-+++++||+|||||-|+++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999998853

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.65  E-value=0.0045  Score=48.12  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0094  Score=43.14  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0073  Score=44.19  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.52  E-value=0.012  Score=41.46  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -|+|.|++|+||||++-.|....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988644

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.34  E-value=0.011  Score=46.48  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      --+++.||||+|||+|+..+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.011  Score=43.12  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|.|++|+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999988654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.012  Score=45.38  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++++|++|||||.|++.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.19  E-value=0.012  Score=43.15  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhCc
Q 027503           14 KAVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~~   36 (222)
                      -++|.|+||+|||+|.-.+..+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999999887543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.18  E-value=0.013  Score=44.20  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .-|+|.|+.|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.17  E-value=0.0069  Score=46.11  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.13  E-value=0.016  Score=40.44  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHhhCcC
Q 027503           13 FKAVMIGDSAVGKSNLLSRFARDEF   37 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~~~~   37 (222)
                      .-|+|.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999998887653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.80  E-value=0.018  Score=44.76  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=23.1

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|.|=|..||||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.016  Score=42.34  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.0035  Score=44.33  Aligned_cols=19  Identities=26%  Similarity=0.552  Sum_probs=16.5

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      .+|+|+.|||||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999975

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.63  E-value=0.018  Score=42.02  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|.|+||+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.54  E-value=0.019  Score=45.74  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      |+|.|++||||||.+..++..-
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999988743

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.46  E-value=0.025  Score=43.75  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..++|.|=|..||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            467899999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.43  E-value=0.022  Score=43.92  Aligned_cols=21  Identities=19%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      +++.|+||+|||.|++.|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            444699999999999998753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.40  E-value=0.029  Score=43.52  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503           10 DYLFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        10 ~~~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      ...++|.|=|..||||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            35789999999999999999998754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.38  E-value=0.021  Score=41.49  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|.|++|+|||+|+..+..+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999998743

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.024  Score=41.38  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.24  E-value=0.022  Score=41.17  Aligned_cols=20  Identities=15%  Similarity=0.218  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.21  E-value=0.017  Score=43.86  Aligned_cols=18  Identities=28%  Similarity=0.647  Sum_probs=16.4

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 027503           15 AVMIGDSAVGKSNLLSRF   32 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l   32 (222)
                      -+|+|+-|||||++++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            478999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.027  Score=40.48  Aligned_cols=20  Identities=15%  Similarity=0.328  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      +++.|++|+|||++++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.81  E-value=0.032  Score=40.35  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhhCc
Q 027503           15 AVMIGDSAVGKSNLLSRFARDE   36 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~~   36 (222)
                      +.|.|++|+|||-|++++...-
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.033  Score=40.80  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=17.7

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      ++|.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999998754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.60  E-value=0.034  Score=40.60  Aligned_cols=21  Identities=14%  Similarity=0.099  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.57  E-value=0.033  Score=40.13  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      -++|.|++|+|||+|+..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999877653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.55  E-value=0.035  Score=41.43  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999988764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.49  E-value=0.028  Score=40.20  Aligned_cols=24  Identities=25%  Similarity=0.145  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhhC
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~~   35 (222)
                      .=-+++.|++++|||.|+..|..-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            344889999999999999987653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.11  E-value=0.035  Score=43.75  Aligned_cols=18  Identities=33%  Similarity=0.643  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 027503           15 AVMIGDSAVGKSNLLSRF   32 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l   32 (222)
                      -+|+|+.|||||+++.++
T Consensus        28 ~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            458899999999999997

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.01  E-value=0.69  Score=32.78  Aligned_cols=76  Identities=20%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCCHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVNEEE  139 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~  139 (222)
                      +.+.++|+|+...  ......+..+|.++++...+ ..+...+......+.+.   ++|++ +|+|+.+..+ .....+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            4678999998643  33445567899999999875 44556655555555443   36765 7899998654 3444444


Q ss_pred             HHHH
Q 027503          140 GKIL  143 (222)
Q Consensus       140 ~~~~  143 (222)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4433

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.038  Score=43.99  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -+++|+|.+|||||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3599999999999999887653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.39  E-value=0.038  Score=41.58  Aligned_cols=15  Identities=13%  Similarity=0.536  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHH
Q 027503           15 AVMIGDSAVGKSNLL   29 (222)
Q Consensus        15 I~llG~~~sGKSsli   29 (222)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.30  E-value=0.049  Score=41.83  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhh
Q 027503           14 KAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~   34 (222)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999998654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.063  Score=39.78  Aligned_cols=20  Identities=25%  Similarity=0.385  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHHHhh
Q 027503           15 AVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~   34 (222)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56999999999999987653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.82  E-value=0.05  Score=41.28  Aligned_cols=15  Identities=20%  Similarity=0.539  Sum_probs=13.1

Q ss_pred             EEEEcCCCCChHHHH
Q 027503           15 AVMIGDSAVGKSNLL   29 (222)
Q Consensus        15 I~llG~~~sGKSsli   29 (222)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.80  E-value=0.46  Score=35.30  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      --+.|.|++++|||+|+-.+..
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHH
Confidence            3467899999999999877653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.097  Score=39.53  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999887653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.70  E-value=0.1  Score=39.00  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             eeeEEEEEcCCCCChHHHHHHHhh
Q 027503           11 YLFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        11 ~~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344578889999999999998765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.15  E-value=0.19  Score=32.64  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHhh
Q 027503           12 LFKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        12 ~~kI~llG~~~sGKSsli~~l~~   34 (222)
                      -+-|.+-|..|+|||+|.+.|..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHH
Confidence            36789999999999999999864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.82  E-value=0.16  Score=37.39  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHhh
Q 027503           13 FKAVMIGDSAVGKSNLLSRFAR   34 (222)
Q Consensus        13 ~kI~llG~~~sGKSsli~~l~~   34 (222)
                      ..|+|.|++|+||+.+++.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3489999999999999998854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=0.16  Score=39.64  Aligned_cols=19  Identities=21%  Similarity=0.506  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 027503           14 KAVMIGDSAVGKSNLLSRF   32 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l   32 (222)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.68  E-value=0.11  Score=36.43  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhhC
Q 027503           15 AVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~~~   35 (222)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.21  Score=37.05  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      -+.|.|++++|||+|+-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3679999999999999877643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.47  E-value=1.4  Score=29.43  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=17.8

Q ss_pred             eeeEEEEEcC-CCCChHHHHHHHhhCcC
Q 027503           11 YLFKAVMIGD-SAVGKSNLLSRFARDEF   37 (222)
Q Consensus        11 ~~~kI~llG~-~~sGKSsli~~l~~~~~   37 (222)
                      .++||.|+|. .++|-+. +..|...+.
T Consensus         3 ~p~KV~IiGA~G~VG~~~-a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSL-LFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHHH-HHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHHH-HHHHHhccc
Confidence            5689999996 7888554 445554443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.74  E-value=0.19  Score=33.52  Aligned_cols=18  Identities=28%  Similarity=0.516  Sum_probs=14.1

Q ss_pred             EEEcCCCCChHH-HHHHHh
Q 027503           16 VMIGDSAVGKSN-LLSRFA   33 (222)
Q Consensus        16 ~llG~~~sGKSs-li~~l~   33 (222)
                      +++|+=.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 665543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.51  E-value=0.26  Score=36.78  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhhC
Q 027503           14 KAVMIGDSAVGKSNLLSRFARD   35 (222)
Q Consensus        14 kI~llG~~~sGKSsli~~l~~~   35 (222)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999999888654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.95  E-value=6.2  Score=27.32  Aligned_cols=83  Identities=11%  Similarity=-0.036  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCHHH
Q 027503           61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNEEE  139 (222)
Q Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~  139 (222)
                      +.+.++|+|+.-.  ......+..+|.++++...+ ..+...+...+..+....   .+ +-+|+|+.+-..    ....
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~---~~~~~iv~N~~~~~~----~~~~  179 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITTLG----IEMA  179 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECTTT----HHHH
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc---ccccccccccccccc----ccch
Confidence            3568899988553  23444566799999998875 344455444444444443   34 447789986422    1223


Q ss_pred             HHHHHHHcCCeEEE
Q 027503          140 GKILAETEGLYFME  153 (222)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (222)
                      ...+....+.+++.
T Consensus       180 ~~~i~~~~~~~~~~  193 (232)
T d1hyqa_         180 KNEIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHHHTTSCEEE
T ss_pred             hhhHHhhcCCeEEE
Confidence            34555666766543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=0.45  Score=34.50  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      ++|.|+..+|||++++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999854

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.13  E-value=0.48  Score=34.10  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      ++|.|+..+|||++++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.60  E-value=0.43  Score=31.00  Aligned_cols=19  Identities=21%  Similarity=0.165  Sum_probs=15.3

Q ss_pred             EEEEcCCCCChHHHHHHHh
Q 027503           15 AVMIGDSAVGKSNLLSRFA   33 (222)
Q Consensus        15 I~llG~~~sGKSsli~~l~   33 (222)
                      .+|.++.|+|||.++-.+.
T Consensus        11 ~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4778999999998886544

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.36  E-value=6.3  Score=26.68  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             eeeEEEEEcC-CCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------------
Q 027503           11 YLFKAVMIGD-SAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF---------------   74 (222)
Q Consensus        11 ~~~kI~llG~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------   74 (222)
                      ..+||+|+|. .+.|-+.+. .|..+......                 ..+.+.++|.+.....               
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLF-KLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHH-HHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHHHHH-HHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccccc
Confidence            5789999996 667766554 54444322111                 1145667776652210               


Q ss_pred             ------hhhhHhhhcCCcEEEEEEeCCChh--hHHHH--------HHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503           75 ------RAITSSYYRGALGALLVYDITRRA--TFENT--------KKWLRELREFCSSCMAIVLVGNKSD  128 (222)
Q Consensus        75 ------~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~--------~~~~~~l~~~~~~~~p~ivv~nK~D  128 (222)
                            ..-....+.++|++|++-......  +-.++        ..+...+..+.....-+++|+|-+|
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                  011235578899998887655322  22221        2233445555544455667777666