Citrus Sinensis ID: 027521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSSSSSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mgtpetsrepcpdrilddvggafgmgavGGAAFHFLkgtynspsgarlsggtqavrmnaprvggsfavwgglfstfdCTMVYLrqkedpwnsiiagAATGGFLSMrqglgsasrsALFGGVLLALIEGAGIMLNKvlsapqnmpmmeepapnmagvpgypmgqmpgqvpvpvessspssssssswfggffggkkedqatsggsktevlesfdappvpsfeyk
Flexible Loop (DISEMBL)
mgtpetsrepcpdRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSSSSSSSWFGGFFGGKKEDQatsggsktevlesfdappvpsfeyk
Low Complexity Region (SEG)
MGTPETSREPCPDRILDDvggafgmgavggaafHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSapqnmpmmeepapnmaGVPGYPMGQMPGQvpvpvessspsssssssWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK
Disordered region (IsUnstruct)
*************RILDDVGGAFGMGAVGGAAFHFLKGTYN************AVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVL*************************************************************************************
Disordered Region (DISOPRED)
******S***CPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKV******************************************************************************PVP*****
Disordered Region (DISEMBL)
**********CPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQV*****************FGGFFGGK************EVLESFDAPPVPSFEYK
Disordered Region (DISPRO)
*****TSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAP*********************************************************************SFDAPPVPSF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSSSSSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9SP35	243	Mitochondrial import inne	yes	no	0.995	0.909	0.704	4e-83
Q9LN27	218	Mitochondrial import inne	no	no	0.981	1.0	0.675	1e-76
Q9VNA0	179	Probable mitochondrial im	yes	no	0.590	0.731	0.609	4e-39
O60830	172	Mitochondrial import inne	yes	no	0.716	0.924	0.538	8e-39
Q2HJE9	172	Mitochondrial import inne	no	no	0.716	0.924	0.532	3e-38
Q9Z0V8	171	Mitochondrial import inne	yes	no	0.608	0.789	0.591	5e-38
Q9Z0V7	172	Mitochondrial import inne	no	no	0.716	0.924	0.520	6e-38
Q99595	171	Mitochondrial import inne	no	no	0.657	0.853	0.553	9e-38
O35092	171	Mitochondrial import inne	no	no	0.608	0.789	0.591	1e-37
Q9LYG1	133	Mitochondrial import inne	no	no	0.572	0.954	0.590	1e-37

>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2

 Score =  307 bits (786), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 189/244 (77%), Gaps = 23/244 (9%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHF+KGTYNSP G+R  GGTQ+V MNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG G+ASRSA+FGG
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEE-------------------PAPNMAGVPGYPM 161
           VLLALIEGAGIMLNKVL+ PQNM MME+                       M G+ G  M
Sbjct: 121 VLLALIEGAGIMLNKVLAQPQNM-MMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQM 179

Query: 162 GQMPGQVPVPVESSSPSSS---SSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPS 218
           GQM  Q  +  ES + +++   SSSSWFGG F  KKE+      SKTEVLESFDAPPVPS
Sbjct: 180 GQMQSQAQIRSESQNQNTASSSSSSSWFGGLFDKKKEEVQPGSESKTEVLESFDAPPVPS 239

Query: 219 FEYK 222
           FE+K
Sbjct: 240 FEFK 243

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN27|TI171_ARATH Mitochondrial import inner membrane translocase subunit TIM17-1 OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1

 Score =  285 bits (730), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/222 (67%), Positives = 177/222 (79%), Gaps = 4/222 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPE+SREPCPDRILDDVGGAF MGAVGG+A+H ++G YNSP GARLSGG QA+RM+ P
Sbjct: 1   MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R GGSF+VWGGL+STFDC +VY RQKEDPWNSI++GAATGGFLS+RQGLG+++RSAL GG
Sbjct: 61  RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSSS 180
           VLLA+IEG GIMLNKV S   N   ME+ A     +P Y MGQ+ GQ  VPV  +S SSS
Sbjct: 121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDHAAT--SLP-YGMGQISGQ-SVPVPETSSSSS 176

Query: 181 SSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
            S SWFG  F  KKE +     S+T +LESFDAPPVP++E+K
Sbjct: 177 GSVSWFGSLFKKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 97/133 (72%), Gaps = 2/133 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
           E  REPCP RI++D GGAF MGA+GG AF  +KG  N+PSG   RLSGG  AVR  +  V
Sbjct: 3   EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLV 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GG+FAVWG  FS  DC++VY R+KEDPWN+II+GA TGG L+ R GL S   SAL GG L
Sbjct: 63  GGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGAL 122

Query: 123 LALIEGAGIMLNK 135
           LALIEG GI+++ 
Sbjct: 123 LALIEGVGIVVSH 135

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1

 Score =  160 bits (404), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 111/167 (66%), Gaps = 8/167 (4%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGAR--LSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G R  L G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSAP-QNM-PMMEEPA--PNMAGV--PGYPMGQ 163
           LALIEG GI+L +  +   +N  P +E+P+  P   G   PGYP  Q
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQ 169

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 110/167 (65%), Gaps = 8/167 (4%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSG--ARLSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G   RL G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R    +   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSAP-QNM-PMMEEPA--PNMAGV--PGYPMGQ 163
           LALIEG GI+L +  +   +N  P +E+P   P+  G   PGYP  Q
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPGQLPSKEGTPGPGYPSYQ 169

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 96/137 (70%), Gaps = 2/137 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSG--ARLSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F   KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFST DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLSA 139
           LALIEGAGI+L +  SA
Sbjct: 123 LALIEGAGILLTRFASA 139

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 109/167 (65%), Gaps = 8/167 (4%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGAR--LSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G R    G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSAP-QNM-PMMEEPA----PNMAGVPGYPMGQ 163
           LALIEG GI+L +  +   +N  P +E+P+       +  PGYP  Q
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLTPKEGSPAPGYPNYQ 169

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 101/150 (67%), Gaps = 4/150 (2%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFS  DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLSA--PQNMPMMEEPA 150
           LALIEGAGI+L +  SA  P      E+P+
Sbjct: 123 LALIEGAGILLTRFASAQFPNGPQFAEDPS 152

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 95/137 (69%), Gaps = 2/137 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F   KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
           GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLSA 139
           LALIEGAGI+L +  SA
Sbjct: 123 LALIEGAGILLTRFASA 139

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9LYG1|TI173_ARATH Mitochondrial import inner membrane translocase subunit TIM17-3 OS=Arabidopsis thaliana GN=TIM17-3 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 98/127 (77%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           M T + S+E    RI++ +G AFG GAVGG+ +HF++G YNSP GAR  GGTQA  MNAP
Sbjct: 1   MDTKKKSKEHGLYRIVNAIGYAFGAGAVGGSVYHFVRGAYNSPIGARYVGGTQAASMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R+GG+FAV+GGL STFD  +V +R+KEDPWNSI+AGAATGG LS+R+G+ +AS SA+  G
Sbjct: 61  RLGGTFAVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGVVAASTSAVMFG 120

Query: 121 VLLALIE 127
             LA++ 
Sbjct: 121 FFLAVLN 127

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
77416941	236	unknown [Solanum tuberosum]	1.0	0.940	0.800	9e-90
449485826	226	PREDICTED: mitochondrial import inner me	1.0	0.982	0.752	1e-89
449435782	226	PREDICTED: mitochondrial import inner me	1.0	0.982	0.747	2e-89
224126157	221	predicted protein [Populus trichocarpa]	0.990	0.995	0.766	2e-85
356575929	213	PREDICTED: mitochondrial import inner me	0.941	0.981	0.725	1e-84
119720834	220	protein translocase [Brassica rapa]	0.981	0.990	0.754	3e-84
225445086	226	PREDICTED: mitochondrial import inner me	1.0	0.982	0.774	6e-84
449487963	237	PREDICTED: mitochondrial import inner me	1.0	0.936	0.717	8e-84
255546315	216	mitochondrial import inner membrane tran	0.968	0.995	0.757	2e-83
356558916	200	PREDICTED: mitochondrial import inner me	0.891	0.99	0.714	5e-82

>gi|77416941|gb|ABA81866.1| unknown [Solanum tuberosum]

 Score =  335 bits (859), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/236 (80%), Positives = 206/236 (87%), Gaps = 14/236 (5%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDDVGGAFGMGAVGG+AFHFLKG YNSP G RL GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R+GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFL MRQGLG+ASRSA+FGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLQMRQGLGAASRSAMFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGY--------PMGQMPGQVPVPV 172
           VLLALIEGAGIMLNKV+SAPQN P M+EP PN+ GVPGY        PMG++PGQ PV +
Sbjct: 121 VLLALIEGAGIMLNKVMSAPQNFPPMDEPLPNVPGVPGYPPGQLPGQPMGKLPGQAPVSI 180

Query: 173 -----ESSSPSSSSSSSWFGGFFGGKKEDQAT-SGGSKTEVLESFDAPPVPSFEYK 222
                ESS+PSSSSS+SWFGG FGG K+++ T SGGSKT+VLESFDAP  P+FEYK
Sbjct: 181 DGMMTESSAPSSSSSTSWFGGLFGGGKKEETTSSGGSKTQVLESFDAPSPPTFEYK 236

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485826|ref|XP_004157284.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/226 (75%), Positives = 192/226 (84%), Gaps = 4/226 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHFLKG Y+SP GARL GG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGIYSSPKGARLLGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R+GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSIIAGAATGGFL MRQG+G+++RSALFGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIIAGAATGGFLQMRQGVGASARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQV--PVPVESSSPS 178
           VLLALIEGAGIMLNKVLS PQN P+M + A  MAGVPGYPM Q+PG         S   S
Sbjct: 121 VLLALIEGAGIMLNKVLSQPQNAPIMIDDAGAMAGVPGYPMDQIPGLTPPGTSSGSPGSS 180

Query: 179 SSSSSSWFGGFFGG--KKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
            + S SWFGG FGG  KK+ +A  G  +T++LESFD+PPVP+FE+K
Sbjct: 181 DAGSGSWFGGLFGGGQKKDSEANRGDGETKILESFDSPPVPNFEFK 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435782|ref|XP_004135673.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Cucumis sativus]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/226 (74%), Positives = 192/226 (84%), Gaps = 4/226 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHFLKG Y+SP G+RL GG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGIYSSPKGSRLLGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R+GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSIIAGAATGGFL MRQG+G+++RSALFGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIIAGAATGGFLQMRQGVGASARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQV--PVPVESSSPS 178
           VLLALIEGAGIMLNKVLS PQN P+M + A  MAGVPGYPM Q+PG         S   S
Sbjct: 121 VLLALIEGAGIMLNKVLSQPQNAPIMIDDAGAMAGVPGYPMDQIPGLTPPGTSSGSPGSS 180

Query: 179 SSSSSSWFGGFFGG--KKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
            + S SWFGG FGG  KK+ +A  G  +T++LESFD+PPVP+FE+K
Sbjct: 181 DAGSGSWFGGLFGGGQKKDSEANRGDGETKILESFDSPPVPNFEFK 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126157|ref|XP_002329674.1| predicted protein [Populus trichocarpa] gi|222870555|gb|EEF07686.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 190/223 (85%), Gaps = 3/223 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRI+DD+GGAFGMGAVGG+AFHF+KG YNSPSG RL GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRIIDDIGGAFGMGAVGGSAFHFIKGVYNSPSGTRLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS FDC+MVYLRQKEDPWNSIIAGAATGGFLSMRQGLG++ RSALFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCSMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGASGRSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMP-MMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSS 179
           VLLALIEGAGIMLNKV+SA Q MP M+E+P P+MAG  G PMGQ          +S+  +
Sbjct: 121 VLLALIEGAGIMLNKVMSAQQEMPIMIEDPVPSMAGGHGSPMGQP--HAHAQEGASASGT 178

Query: 180 SSSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
           +S S + G F GGKKE +A   GSKTE+LESFDAPPVP+FEYK
Sbjct: 179 NSGSWFGGWFGGGKKESEANISGSKTEILESFDAPPVPNFEYK 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575929|ref|XP_003556088.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 188/226 (83%), Gaps = 17/226 (7%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHFLKG YN+P GAR+   +QAVR+NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNAPRGARVVAASQAVRLNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS+FDCTMVYLRQKEDPWNSI AGAATGGFLSMRQGL +A+RSA FGG
Sbjct: 61  RVGGSFAVWGGLFSSFDCTMVYLRQKEDPWNSIFAGAATGGFLSMRQGLPAAARSAAFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMM-EEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSS 179
           VLLALIEGAGIMLNK LSA Q MPM+ +EP P   G+PG P+            +S+P +
Sbjct: 121 VLLALIEGAGIMLNKFLSAQQPMPMIVDEPLPP-NGLPGQPV------------ASAPDA 167

Query: 180 SSSSSWFGGFFGGKKEDQA---TSGGSKTEVLESFDAPPVPSFEYK 222
           +S SSW GG+FG  K+D+A    +GGS+T+VLESFDAPPVP+FEYK
Sbjct: 168 ASQSSWLGGWFGDGKKDEAAAEATGGSETKVLESFDAPPVPNFEYK 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119720834|gb|ABL97987.1| protein translocase [Brassica rapa]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 169/224 (75%), Positives = 187/224 (83%), Gaps = 6/224 (2%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPE+SREPCPDRILDD+GGAFGMGAVGG+AFHFLKGTYNSP G+R  GG QAV MNAP
Sbjct: 1   MGTPESSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGTYNSPKGSRFLGGKQAVAMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           R+GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSIIAGAATGGFLSMRQG  +A RSAL GG
Sbjct: 61  RLGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIIAGAATGGFLSMRQGPNAAVRSALVGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVPVPVES-SSPSS 179
           VLLALIEGAGI LNK+++ PQ+M M E     MAGVPG  MGQ   QVP   +    P +
Sbjct: 121 VLLALIEGAGIALNKMMAEPQHMQMEE----GMAGVPGIQMGQQQQQVPNQGQMIPPPEN 176

Query: 180 SSSSSWFGGFFGGKKED-QATSGGSKTEVLESFDAPPVPSFEYK 222
           ++SSSWFGG FG K E+ Q TS GS+T+VLESFDAPPVPSFEYK
Sbjct: 177 TASSSWFGGLFGKKNEETQPTSSGSETKVLESFDAPPVPSFEYK 220

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445086|ref|XP_002283637.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Vitis vinifera]

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 192/226 (84%), Gaps = 4/226 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDDVGGAFGMGAVGG+AFHFLKG YNSP G R+ GG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERVIGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS FDCTMVY+RQKEDPWNSIIAGAATGGFL MRQGL +++RSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGLAASTRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPM-MEEPAPNMA--GVPGYPMGQMPGQVPVPVESSSP 177
           VLL LIEGAGIMLNKVLSAPQN+PM MEEP P M    V GYPMGQ+PG  P    +  P
Sbjct: 121 VLLGLIEGAGIMLNKVLSAPQNLPMTMEEPVPGMTPGPVSGYPMGQLPGMTPPAPPAPEP 180

Query: 178 SSSSSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAP-PVPSFEYK 222
           SS SSS + G F GGKK++ A + GSKTE+LESFD P P+PSFEYK
Sbjct: 181 SSGSSSWFGGLFGGGKKQEPAANSGSKTEILESFDTPTPMPSFEYK 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487963|ref|XP_004157888.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 188/237 (79%), Gaps = 15/237 (6%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHF+KG YNSP G R+ GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGLYNSPRGTRIIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS FDCTMVY+RQKEDPWNSIIAGAATGGFL MRQG  SA+RSALFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGPASAARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPMMEEPAPNMAGVPGYPMGQMPGQVP---VPVESSSP 177
           VLLALIEGAGIMLNKVLS  QNMP++ E    M GVPGYP GQ+PG+ P   +P    + 
Sbjct: 121 VLLALIEGAGIMLNKVLSQQQNMPVVIEEPAGMGGVPGYPTGQLPGRAPPMSLPQAELAS 180

Query: 178 SSSSSSSWFGGFFGG------------KKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
            SSSSSS      G             KKE + +SGGS+T +LESFDAPPVP+FE+K
Sbjct: 181 ISSSSSSSSSSDSGNGSWFGGWFGGGKKKESEVSSGGSETTILESFDAPPVPNFEFK 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546315|ref|XP_002514217.1| mitochondrial import inner membrane translocase subunit tim17, putative [Ricinus communis] gi|223546673|gb|EEF48171.1| mitochondrial import inner membrane translocase subunit tim17, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 169/223 (75%), Positives = 187/223 (83%), Gaps = 8/223 (3%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHF+KG YNSP+GARL GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGIYNSPTGARLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS FDCTMVY RQKEDPWNSI AGAATGGFLSMRQGLG+++R+ALFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIFAGAATGGFLSMRQGLGASARAALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMP-MMEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSS 179
           +LL LIEGAGIMLNKV+SA QNMP M+++ AP MAG+P      +PGQ P    S S S 
Sbjct: 121 ILLGLIEGAGIMLNKVMSAQQNMPVMIDDSAPAMAGLP-----SLPGQEPASTSSGSESG 175

Query: 180 SSSSSWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
           SS     G F GGK E+  TS G KTE+LESFDAPPVP+FEYK
Sbjct: 176 SSWFG--GWFGGGKTEEPITSKGGKTEILESFDAPPVPNFEYK 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558916|ref|XP_003547748.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/224 (71%), Positives = 175/224 (78%), Gaps = 26/224 (11%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGG+AFHFLKG YNSP G R  G TQAVR+NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
           RVGGSFAVWGGLFS FDCTMVY RQKEDPWNSI+AGAATGGFLSMRQGLG+++RSA FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGG 120

Query: 121 VLLALIEGAGIMLNKVLSAPQNMPM-MEEPAPNMAGVPGYPMGQMPGQVPVPVESSSPSS 179
           VLLALIEGAGIMLNK LSA Q MPM M+EP P                         P  
Sbjct: 121 VLLALIEGAGIMLNKFLSAQQPMPMIMDEPQPQ------------------------PPQ 156

Query: 180 SSSSSWFGGFF-GGKKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
           SS   W GG+F GG +E+ A SGGS+T++LESFDAPPVP+FEYK
Sbjct: 157 SSEQPWLGGWFGGGNREETAGSGGSETKILESFDAPPVPNFEYK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2049771	243	TIM17-2 "AT2G37410" [Arabidops	0.738	0.674	0.704	7.6e-72
TAIR|locus:2012918	218	TIM17-1 "translocase inner mem	0.981	1.0	0.563	1.4e-62
FB|FBgn0263977	173	Tim17b [Drosophila melanogaste	0.594	0.763	0.507	4.7e-32
GENEDB_PFALCIPARUM|PF14_0328	162	PF14_0328 "mitochondrial impor	0.590	0.808	0.526	9.8e-32
UNIPROTKB|Q8ILB7	162	PF14_0328 "Mitochondrial impor	0.590	0.808	0.526	9.8e-32
FB|FBgn0037310	179	Tim17b1 "Tim17b1" [Drosophila	0.585	0.726	0.530	4.2e-31
MGI|MGI:1343131	171	Timm17a "translocase of inner	0.603	0.783	0.522	6.9e-31
UNIPROTKB|F1MS17	172	TIMM17B "Mitochondrial import	0.590	0.761	0.526	1.1e-30
UNIPROTKB|O60830	172	TIMM17B "Mitochondrial import	0.590	0.761	0.526	1.1e-30
UNIPROTKB|I3LVJ9	172	TIMM17B "Uncharacterized prote	0.590	0.761	0.526	1.1e-30

TAIR|locus:2049771 TIM17-2 "AT2G37410" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
 Identities = 117/166 (70%), Positives = 124/166 (74%)

Query:     1 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAP 60
             MGTPETSREPCPDRILDD               HF+KGTYNSP G+R  GGTQ+V MNAP
Sbjct:     1 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query:    61 RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
             R GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG G+ASRSA+FGG
Sbjct:    61 RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query:   121 VLLALIEGAGIMLNKVLSXXXXXXXXXXXXXXXXGVPGYPMGQMPG 166
             VLLALIEGAGIMLNKVL+                G+ G  M  MPG
Sbjct:   121 VLLALIEGAGIMLNKVLAQPQNMMMEDPGMQGMPGMQG--MQGMPG 164

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2012918 TIM17-1 "translocase inner membrane subunit 17-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 125/222 (56%), Positives = 148/222 (66%)

Query:     1 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAP 60
             MGTPE+SREPCPDRILDD               H ++G YNSP GARLSGG QA+RM+ P
Sbjct:     1 MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query:    61 RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGG 120
             R GGSF+VWGGL+STFDC +VY RQKEDPWNSI++GAATGGFLS+RQGLG+++RSAL GG
Sbjct:    61 RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query:   121 VLLALIEGAGIMLNKVLSXXXXXXXXXXXXXXXXGVPGYPMGQMPGQXXXXXXXXXXXXX 180
             VLLA+IEG GIMLNKV S                 +P Y MGQ+ GQ             
Sbjct:   121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDHAATS--LP-YGMGQISGQSVPVPETSSSSSG 177

Query:   181 XXXXWFGGFFGGKKEDQATSGGSKTEVLESFDAPPVPSFEYK 222
                 WFG  F  KKE +     S+T +LESFDAPPVP++E+K
Sbjct:   178 SVS-WFGSLFKKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009693 "ethylene biosynthetic process" evidence=RCA

FB|FBgn0263977 Tim17b [Drosophila melanogaster (taxid:7227)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 68/134 (50%), Positives = 90/134 (67%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+PSG   RL G   A++  +P +
Sbjct:     3 EYAREPCPYRIVDDCGGAFAMGCIGGGVFQAIKGFRNAPSGLNRRLVGSIIAIKTRSPVI 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
              G+FAVWGG+FST DCT+V+ R+KEDPWNSII+GAATGG L+ R G+ + + SA+ GGVL
Sbjct:    63 AGNFAVWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGGVL 122

Query:   123 LALIEGAGIMLNKV 136
             LALIEG GI+  ++
Sbjct:   123 LALIEGVGILFTRI 136

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GENEDB_PFALCIPARUM|PF14_0328 PF14_0328 "mitochondrial import inner membrane translocase subunit tim17, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/131 (52%), Positives = 86/131 (65%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGG 64
             + +REPCPDRI++D               HFLKG  NSP G  LSG   + RM AP +GG
Sbjct:     6 DLAREPCPDRIIEDMGGAFGMGCIGGYIWHFLKGARNSPKGDVLSGALYSSRMRAPILGG 65

Query:    65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLA 124
             +FAVWGG FS FDC   Y+R+KED WN+I +G  TGG L+MR G  SASR+A+ GGVLLA
Sbjct:    66 NFAVWGGTFSCFDCAFQYMRKKEDHWNAIGSGFCTGGVLAMRGGWRSASRNAIVGGVLLA 125

Query:   125 LIEGAGIMLNK 135
             +IE   I+L +
Sbjct:   126 IIEIVSIVLTR 136

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

UNIPROTKB|Q8ILB7 PF14_0328 "Mitochondrial import inner membrane translocase subunit Tim17, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/131 (52%), Positives = 86/131 (65%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGG 64
             + +REPCPDRI++D               HFLKG  NSP G  LSG   + RM AP +GG
Sbjct:     6 DLAREPCPDRIIEDMGGAFGMGCIGGYIWHFLKGARNSPKGDVLSGALYSSRMRAPILGG 65

Query:    65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLA 124
             +FAVWGG FS FDC   Y+R+KED WN+I +G  TGG L+MR G  SASR+A+ GGVLLA
Sbjct:    66 NFAVWGGTFSCFDCAFQYMRKKEDHWNAIGSGFCTGGVLAMRGGWRSASRNAIVGGVLLA 125

Query:   125 LIEGAGIMLNK 135
             +IE   I+L +
Sbjct:   126 IIEIVSIVLTR 136

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

FB|FBgn0037310 Tim17b1 "Tim17b1" [Drosophila melanogaster (taxid:7227)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 70/132 (53%), Positives = 85/132 (64%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
             E  REPCP RI++D                 +KG  N+PSG   RLSGG  AVR  +  V
Sbjct:     3 EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLV 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
             GG+FAVWG  FS  DC++VY R+KEDPWN+II+GA TGG L+ R GL S   SAL GG L
Sbjct:    63 GGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGAL 122

Query:   123 LALIEGAGIMLN 134
             LALIEG GI+++
Sbjct:   123 LALIEGVGIVVS 134

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

MGI|MGI:1343131 Timm17a "translocase of inner mitochondrial membrane 17a" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 71/136 (52%), Positives = 85/136 (62%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRV 62
             E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQL 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
             GGSFAVWGGLFST DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query:   123 LALIEGAGIMLNKVLS 138
             LALIEGAGI+L +  S
Sbjct:   123 LALIEGAGILLTRFAS 138

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1MS17 TIMM17B "Mitochondrial import inner membrane translocase subunit Tim17-B" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/133 (52%), Positives = 85/133 (63%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNK 135
             LALIEG GI+L +
Sbjct:   123 LALIEGVGILLTR 135

GO:0016021 "integral to membrane" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|O60830 TIMM17B "Mitochondrial import inner membrane translocase subunit Tim17-B" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/133 (52%), Positives = 85/133 (63%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNK 135
             LALIEG GI+L +
Sbjct:   123 LALIEGVGILLTR 135

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|I3LVJ9 TIMM17B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/133 (52%), Positives = 85/133 (63%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSVNAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNK 135
             LALIEG GI+L +
Sbjct:   123 LALIEGVGILLTR 135

GO:0016021 "integral to membrane" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39515	TIM17_YEAST	No assigned EC number	0.5034	0.6396	0.8987	yes	no
O60830	TI17B_HUMAN	No assigned EC number	0.5389	0.7162	0.9244	yes	no
Q9SP35	TI172_ARATH	No assigned EC number	0.7049	0.9954	0.9094	yes	no
Q9Z0V8	TI17A_MOUSE	No assigned EC number	0.5912	0.6081	0.7894	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_kg.C_scaffold_121000002 hypothetical protein (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	1e-67
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	1e-50
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	4e-40
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	9e-15
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	5e-08

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score =  204 bits (521), Expect = 1e-67
 Identities = 78/142 (54%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 7   SREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSF 66
           SREPCPDRI++D+GGAF MG +GG  +HFLKG  NSP G R SGG   +R  AP +GG+F
Sbjct: 7   SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNF 66

Query: 67  AVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALI 126
           A+WGGLFSTFDCT+ YLR KED WN+I +G  TGG L++R G  SA R+A+FGG+LL +I
Sbjct: 67  AIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGII 126

Query: 127 EGAGIMLNKVLSAPQNMPMMEE 148
           E   I +N+           ++
Sbjct: 127 ELVSIGMNR-RQMRTPRQQFQQ 147

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score =  161 bits (410), Expect = 1e-50
 Identities = 76/148 (51%), Positives = 100/148 (67%), Gaps = 2/148 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGG 64
           E +REPCP RILDD GGAF MG +GG+ F   KG  NSP G +L G  +A++  AP +GG
Sbjct: 3   EYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGG 62

Query: 65  SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLA 124
           +FAVWGGLFST DC +V +R+KEDPWNSII+G  TG  L++R G  +   SA+ G  +LA
Sbjct: 63  NFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILA 122

Query: 125 LIEGAGIMLNKVLSAPQNMPMMEEPAPN 152
           +IEG G++L +  +A   M      AP+
Sbjct: 123 VIEGVGLVLTRWAAA--QMDPTAPEAPD 148

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score =  133 bits (337), Expect = 4e-40
 Identities = 60/128 (46%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 10  PCPDRILDDVGGAFGMGAVGGAAFHFLKGTYN----SPSGARLSGGTQAVRMNAPRVGGS 65
           PCP+RI+ D GG F MGAV G  F    G  N     P   RL+G   A     P  G +
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 66  FAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLAL 125
           FAV+GGL+S  +C +  LR KEDPWNSIIAGA TG  L +R G  +A+  A  G    A 
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAAFSAA 120

Query: 126 IEGAGIML 133
           IEG G +L
Sbjct: 121 IEGLGKLL 128

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAP 60
           + +PE  R+PCP   L D   AF    +G +A   LKG          S           
Sbjct: 21  ILSPEE-RDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVH 79

Query: 61  RVGGSFA-VWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFG 119
            +G +F  VWGGLFST DCT   L+ KE   N+   G  TG  L +  GL  A  +++  
Sbjct: 80  LLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVL-GLIYAGINSIIT 138

Query: 120 GV--------LLALIEGAGIMLNKVLSAPQNMPM 145
            +         +A     G       + PQ MPM
Sbjct: 139 ALRAKHDIANAIAAGAFTG-AALASSAGPQAMPM 171

Length = 191

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 19  VGGAFGMGAVGGAAFHFLKGTYNSPSGA----RLSGGTQAVRMNAPRVGGSFAVWGGLFS 74
            G  +  G   GA      G   + S      RL+     V    P  G +  +   +++
Sbjct: 38  TGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYN 97

Query: 75  TFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLA 124
             +  +   R K D +NS+ AGA TG      +GL   +RS   G     
Sbjct: 98  GINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAG 147

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PTZ00236	164	mitochondrial import inner membrane translocase su	100.0
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	100.0
KOG1652	183	consensus Mitochondrial import inner membrane tran	100.0
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.96
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.84
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.72
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.45
KOG4608	270	consensus Uncharacterized conserved protein [Funct	97.91
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.78
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	95.43
KOG4096	75	consensus Uncharacterized conserved protein [Funct	95.14
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	93.78
KOG1398	460	consensus Uncharacterized conserved protein [Funct	83.03

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=100.00  E-value=3.4e-43  Score=294.54  Aligned_cols=142  Identities=55%  Similarity=1.004  Sum_probs=138.0

Q ss_pred             CCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHh
Q 027521            4 PETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYL   83 (222)
Q Consensus         4 ~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~   83 (222)
                      -||+|||||+||+||+|++|.+|+++|++|+|++|+||+|.++|+++.++.+++++|+++++||+||++|+++||+++++
T Consensus         4 ~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~   83 (164)
T PTZ00236          4 RDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYL   83 (164)
T ss_pred             hhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 027521           84 RQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPM  145 (222)
Q Consensus        84 R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~~~~  145 (222)
                      |+|||+||+++|||+||++|++|.|++++++++++||+++++||+++++++|++++.+.+++
T Consensus        84 R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~~~~  145 (164)
T PTZ00236         84 RGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPRQQF  145 (164)
T ss_pred             HccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999998776654

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=100.00  E-value=6.9e-42  Score=288.21  Aligned_cols=139  Identities=53%  Similarity=0.972  Sum_probs=135.6

Q ss_pred             CCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHh
Q 027521            4 PETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYL   83 (222)
Q Consensus         4 ~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~   83 (222)
                      -||+|||||+|++|++|.+|.+|+++|++||+++|++|+|.++|++++++.+++++++++++||+||++|+++||+++++
T Consensus         2 ~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~   81 (170)
T TIGR00980         2 EEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAI   81 (170)
T ss_pred             cccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 027521           84 RQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQN  142 (222)
Q Consensus        84 R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~  142 (222)
                      |+|||+||+++|||+||++|++|.|+++++++++++++++++||+++|+++|+++++.+
T Consensus        82 R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~~~~~  140 (170)
T TIGR00980        82 RKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAAAQMD  140 (170)
T ss_pred             hcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999987664

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-41  Score=282.20  Aligned_cols=144  Identities=58%  Similarity=1.007  Sum_probs=139.3

Q ss_pred             CCCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521            3 TPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY   82 (222)
Q Consensus         3 ~~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~   82 (222)
                      +.||+|||||+||++|+|++|.||++.|.+|++++|++|+|.|.|+.+.++.+++++|+.|++||+||++||.+||++++
T Consensus         1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~   80 (183)
T KOG1652|consen    1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA   80 (183)
T ss_pred             CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 027521           83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMM  146 (222)
Q Consensus        83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~~~~~  146 (222)
                      +|+|||+||+|++||+||++|+.|.|+++|+.||+++|++++++|+++++++|+.+...++..+
T Consensus        81 ~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~  144 (183)
T KOG1652|consen   81 IRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQP  144 (183)
T ss_pred             HhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999887766544

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.96  E-value=4e-29  Score=206.88  Aligned_cols=119  Identities=22%  Similarity=0.283  Sum_probs=113.5

Q ss_pred             CCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC----CCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521            7 SREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS----GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY   82 (222)
Q Consensus         7 ~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~----g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~   82 (222)
                      ++|.|.|++++.+|.+|++|+++|+++|+++|++++|.    +.|++.++|.++++++++|++||+|+++|+++||.+++
T Consensus        26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~  105 (149)
T TIGR00983        26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEA  105 (149)
T ss_pred             CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999874    45889999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 027521           83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLAL  125 (222)
Q Consensus        83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~al  125 (222)
                      +|+|||+||+++||++||++|++++|+|+++.++++|++++++
T Consensus       106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       106 TRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV  148 (149)
T ss_pred             HhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence            9999999999999999999999999999999999999888764

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=3.8e-24  Score=169.43  Aligned_cols=120  Identities=40%  Similarity=0.663  Sum_probs=110.6

Q ss_pred             CCchhHHhhhhhHHHHHHHHHHHHHHHHhh----ccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhc
Q 027521           10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGT----YNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQ   85 (222)
Q Consensus        10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~----~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~   85 (222)
                      +|++|++++++.+|.+|++.|++.+++++.    ++.|.+++++.+++.+++++++.+.+||.++++|+++||.++++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            699999999999999999999999998664    3445556788999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 027521           86 KEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGA  129 (222)
Q Consensus        86 KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliega  129 (222)
                      |||+||+++||++||++++++.|++.++.++++++++.++++..
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~  124 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYY  124 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998854

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.3e-21  Score=164.49  Aligned_cols=122  Identities=24%  Similarity=0.274  Sum_probs=115.2

Q ss_pred             CCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC----CCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHH
Q 027521            6 TSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS----GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMV   81 (222)
Q Consensus         6 ~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~----g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~   81 (222)
                      -+|+.|.|.+++.+|.+|+.|++.|++.|++.|++|.+.    +.|++.++|.++++++..|++.++++.+|+.+|..++
T Consensus        68 ~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~  147 (206)
T KOG3324|consen   68 IKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIE  147 (206)
T ss_pred             ccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999999999764    4588999999999999999999999999999999999


Q ss_pred             HhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 027521           82 YLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIE  127 (222)
Q Consensus        82 ~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~alie  127 (222)
                      +.|+|||+||+++||++||++|++.+|+|++++++++++.+.++.-
T Consensus       148 ~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~  193 (206)
T KOG3324|consen  148 ATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWT  193 (206)
T ss_pred             HhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988887765

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.8e-18  Score=143.02  Aligned_cols=119  Identities=25%  Similarity=0.382  Sum_probs=93.1

Q ss_pred             CCchhHHhhhhhHHHHHHHHHHHHHHHHhhcc----CCCCCcc---ccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521           10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGTYN----SPSGARL---SGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY   82 (222)
Q Consensus        10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~~n----sP~g~rl---~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~   82 (222)
                      .|..|.+-+    -++|..+|.++|+|.+.++    .|+-.|+   .+.+..+-++....+++|+++|++|+++||++++
T Consensus        41 ~c~~Ka~~s----gV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~  116 (168)
T KOG3225|consen   41 SCAVKAVKS----GVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIES  116 (168)
T ss_pred             chhHHHHHh----hccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHH
Confidence            455555553    3567777888888888765    3422222   2333344456667799999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027521           83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA  139 (222)
Q Consensus        83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~  139 (222)
                      +|.|+||+|.+++||+||+.++.|+||++    +++||++|++++   ..+.|++..
T Consensus       117 ~RAK~D~~NgaiaG~vtGg~l~~raGp~a----~~~G~agfa~fS---~~id~y~~~  166 (168)
T KOG3225|consen  117 FRAKSDWYNGAIAGCVTGGSLGYRAGPKA----AAIGCAGFAAFS---AAIDKYMRG  166 (168)
T ss_pred             HHhhhchhcceeeeeeeccchhhcccchh----hhhchhHHHHHH---HHHHHhhhc
Confidence            99999999999999999999999999998    788998888887   457777754

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.4e-15  Score=125.67  Aligned_cols=126  Identities=27%  Similarity=0.322  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCC----------------------------------
Q 027521            1 MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGA----------------------------------   46 (222)
Q Consensus         1 ~~~~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~----------------------------------   46 (222)
                      |-||| .|.+|+..++.+.+.+|-++++.+.+++-++|+++.+..+                                  
T Consensus        21 ~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~   99 (191)
T COG5596          21 ILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCT   99 (191)
T ss_pred             ccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccc
Confidence            34778 8999999999999999999999999999999998753110                                  


Q ss_pred             ----ccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 027521           47 ----RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL  122 (222)
Q Consensus        47 ----rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~  122 (222)
                          |++..++-+.++++.+|++|+++|+.|...||+++.+|+|+|+.|++.+|+.||+.|+.+.|+|+|..+...-+++
T Consensus       100 ~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~  179 (191)
T COG5596         100 PFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAF  179 (191)
T ss_pred             hHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhh
Confidence                1122223344567888999999999999999999999999999999999999999999999999965554444444


Q ss_pred             HHHHH
Q 027521          123 LALIE  127 (222)
Q Consensus       123 ~alie  127 (222)
                      .+.++
T Consensus       180 s~~~~  184 (191)
T COG5596         180 SAGIT  184 (191)
T ss_pred             hhhHH
Confidence            44443

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=1.7e-06  Score=77.17  Aligned_cols=88  Identities=22%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             HhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027521           55 VRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLN  134 (222)
Q Consensus        55 vr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~  134 (222)
                      +.+.+-+.|-..|++...|-++...+..+|+|+|.||.++||++||+++++.-|++.+++..++|+++.+...+....+.
T Consensus       127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l~q  206 (270)
T KOG4608|consen  127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLMLFQ  206 (270)
T ss_pred             HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHHHH
Confidence            33455556677789999999999999999999999999999999999999999999988888998888888877777777


Q ss_pred             hhhcCCCC
Q 027521          135 KVLSAPQN  142 (222)
Q Consensus       135 r~~~~~~~  142 (222)
                      +....+-|
T Consensus       207 ~a~~k~vn  214 (270)
T KOG4608|consen  207 KASGKTVN  214 (270)
T ss_pred             HHhCCcHH
Confidence            66655433

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=2.7e-06  Score=73.18  Aligned_cols=100  Identities=30%  Similarity=0.317  Sum_probs=73.8

Q ss_pred             HhhccCCCCCccccHHH----HH---hhcchhhhhHHH-HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccC
Q 027521           37 KGTYNSPSGARLSGGTQ----AV---RMNAPRVGGSFA-VWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG  108 (222)
Q Consensus        37 ~G~~nsP~g~rl~g~l~----av---r~~gp~~G~sFA-~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G  108 (222)
                      +..+.+.+|-++-...+    .+   +...+..+.+|+ +||++++.++|+..++|.|+|.||....|++||..++.+..
T Consensus        49 k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl  128 (191)
T COG5596          49 KSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGL  128 (191)
T ss_pred             hhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeee
Confidence            44455566655533222    22   235666799998 99999999999999999999999999999999999999988


Q ss_pred             chHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 027521          109 LGSASRSALF-------GGVLLALIEGAGIMLNKV  136 (222)
Q Consensus       109 ~ka~~~sAl~-------Gg~~~aliegag~~~~r~  136 (222)
                      +.+-.-|.|.       ..-..++.++.|.++.+.
T Consensus       129 ~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~  163 (191)
T COG5596         129 IYAGINSIITALRAKHDIANAIAAGAFTGAALASS  163 (191)
T ss_pred             ecccchhhhhhhhhccccchhhhhhhhhhHHHHhh
Confidence            8776666766       233445555666666655

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=95.43  E-value=0.22  Score=39.12  Aligned_cols=120  Identities=19%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhccC-CCCCcccc---HHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 027521           17 DDVGGAFGMGAVGGAAFHFLKGTYNS-PSGARLSG---GTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNS   92 (222)
Q Consensus        17 d~~G~af~mG~v~G~~~g~~~G~~ns-P~g~rl~g---~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~Ns   92 (222)
                      +++-.....|.+.|.++|.+.+.+.. +...+...   -++.+-+...+.+..++..-+.|.++-+.++.+=++-=--|.
T Consensus         4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D   83 (128)
T PF02466_consen    4 ERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDD   83 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            55667788899999999999998865 32222222   222222333333556888888888888888877665335689


Q ss_pred             HHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027521           93 IIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKV  136 (222)
Q Consensus        93 iiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~  136 (222)
                      .+-.+++|++-+.--+.+.-.+..+.++++++++..+-..++|+
T Consensus        84 ~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   84 PWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             cchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998888888999999999999988776666554

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.02  Score=42.65  Aligned_cols=71  Identities=21%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             CCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHH
Q 027521            6 TSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCT   79 (222)
Q Consensus         6 ~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~   79 (222)
                      +++.+|.+|+..-.-.+...|...|.+||-+.++|.-|.++   +.++.+.+..-..+++|+.+=++=+.++|.
T Consensus         2 q~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~---~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    2 QQQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGR---GLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChh---HHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            36779999998866666666666777777777777766554   334555555555578888777776766664

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=93.78  E-value=0.081  Score=38.87  Aligned_cols=63  Identities=30%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             CCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC-CCccccHHHHHhhcchhhhhHHHHHHHHHHHH
Q 027521           10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS-GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTF   76 (222)
Q Consensus        10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~-g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~   76 (222)
                      +|.+|+..    ++.||...|.+.|++.|.++.-+ +.|-+..++.+.+..-..+.+|+.+=++=+.+
T Consensus         2 sc~~kikm----G~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~I   65 (67)
T PF10247_consen    2 SCFDKIKM----GFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVI   65 (67)
T ss_pred             cHHHHHHH----HHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccc
Confidence            57777655    66666666666666655554321 23334555666665555567776654443333

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.03  E-value=1.7  Score=41.98  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=39.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhc
Q 027521           61 RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMR  106 (222)
Q Consensus        61 ~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r  106 (222)
                      +++.-.+.+-++|.++.|++.+++-+||..|+++||.+++..+..-
T Consensus       301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy  346 (460)
T KOG1398|consen  301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY  346 (460)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence            3455668889999999999999999999999999999998665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00