Citrus Sinensis ID: 027523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEEHHcccccccHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEcccEEEHHHcccccccHHHHHHHHHHHHccccccccHHHccc
Coil and Loop (DISEMBL)
MDRLNILLLGLPLFLLCSDllnlftpppppppksashhhhkppipsenltpdfpsqkivggigygstVNINFcascsyrgtAITMKRMLEtqfpgidvvlanyppplpkrllakvvpavQIGVIGIVVAGeqifpmlgmtpppwyyslranrfgsiASTWLIGNFLQSFLqssgafevycnddlvfsklkegrfpgeiELKDLVAKQLASSRlvdgvgsvws
Flexible Loop (DISEMBL)
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQlassrlvdgvgsvws
Low Complexity Region (SEG)
MDRlnilllglplfllcsdllnlFTpppppppksashhhhkppipsENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKvvpavqigvigivvagEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS
Disordered region (IsUnstruct)
********************************************************KIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA**********LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLV********
Disordered Region (DISOPRED)
*DRLNILLLGLPLFLLCSDLLNL****************************************YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLAS************
Disordered Region (DISEMBL)
MDRLNILLLGLPLFLLCSDLLNLFTPPPP*************PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS
Disordered Region (DISPRO)
*DRLNILLLGLPLFLLCSDLLNLFTPP*********************************GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLAS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9STZ2	209	SelT-like protein OS=Arab	yes	no	0.900	0.956	0.685	2e-80
Q9BN19	244	Putative esophageal gland	N/A	no	0.653	0.594	0.358	1e-21
Q19892	216	Putative selT-like protei	yes	no	0.932	0.958	0.266	2e-18
Q9VMV6	198	SelT-like protein OS=Dros	yes	no	0.671	0.752	0.342	4e-17
Q9U3N5	247	Putative selT-like protei	no	no	0.927	0.834	0.242	7e-16
Q502K9	210	Selenoprotein T2 OS=Danio	yes	no	0.752	0.795	0.273	8e-13
Q6PBD1	201	Selenoprotein T OS=Xenopu	yes	no	0.743	0.820	0.248	2e-12
Q1H5H1	195	Selenoprotein T OS=Rattus	yes	no	0.738	0.841	0.237	9e-12
P62342	195	Selenoprotein T OS=Mus mu	yes	no	0.738	0.841	0.237	9e-12
P62341	195	Selenoprotein T OS=Homo s	yes	no	0.738	0.841	0.237	1e-11

>sp|Q9STZ2|SELT_ARATH SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2

 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 10/210 (4%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
           CN +LVFSKLKEGRFPGEIEL+DL++  + 
Sbjct: 172 CNGELVFSKLKEGRFPGEIELRDLISGTMT 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BN19|HSP6_HETGL Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 82/145 (56%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
           V  +FC SC YR       ++L  ++PGID+   NYPP + + + A+V+  V+I +I  V
Sbjct: 83  VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142

Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFS 187
           V+G   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++S
Sbjct: 143 VSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWS 202

Query: 188 KLKEGRFPGEIELKDLVAKQLASSR 212
           KL+ GR P   EL   +   LA  R
Sbjct: 203 KLESGRVPSPPELFQAIDSHLAIRR 227

Heterodera glycines (taxid: 51029)

>sp|Q19892|SELT2_CAEEL Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans GN=F28H7.4 PE=3 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 14/221 (6%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSA------SHHHHKPPIPSENLTPDFP 54
           M R   +++GL      + + ++F     PP + +      S       IP+  +  +  
Sbjct: 1   MSRSGAIIIGL---FFIASIFDVFRAEKEPPAEDSRLEDYLSSELETTAIPT-VVNENSH 56

Query: 55  SQKIVGGIGYGS---TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRL 111
           SQ +V   G+      + I +C SC Y+          + ++PG+ +   N+ P   K  
Sbjct: 57  SQDVVDS-GFSKDLPKLTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGC 115

Query: 112 LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQ 171
           LA++V   +IG+I IV+ G   F  +G   P    +   NRF      ++IGN  +S L 
Sbjct: 116 LAQIVGVAKIGLIAIVITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFESTLS 175

Query: 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212
           S+GAFE++  D  ++SK+ + R P + E  +L+  QL + R
Sbjct: 176 STGAFEIFLGDKQIWSKISKERVPTQEEFLNLIDLQLKTIR 216

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VMV6|SELT_DROME SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%)

Query: 67  TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGI 126
           T+   +C SC YR        +L  ++P I V   NY PP     L+K++ A++I +I  
Sbjct: 43  TMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVS 102

Query: 127 VVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVF 186
           VV+    F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+
Sbjct: 103 VVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVW 162

Query: 187 SKLKEGRFPGEIELKDLVAKQLASSRLVD 215
           SKL+ GRFP    L  ++   L  +  V 
Sbjct: 163 SKLQTGRFPSPEVLFQIIDNHLQFTEKVQ 191

Drosophila melanogaster (taxid: 7227)

>sp|Q9U3N5|SELT1_CAEEL Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans GN=C35C5.3 PE=3 SV=2

 Score = 84.0 bits (206), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 25/231 (10%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           M R  + ++G+  F+   D+L   T          +H H K    +E    +  SQ    
Sbjct: 1   MSRFGVFIIGVLFFMSVCDVLR--TVSAEEHSHDENHVHEKDDFEAE-FGDETDSQSFSQ 57

Query: 61  GIGYGS----------------------TVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
           G                           T+ I +C SC Y+          + ++P + +
Sbjct: 58  GTEEDHIEVREQSSFVKPTAVHHAKDLPTLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPI 117

Query: 99  VLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIAS 158
             AN+ P L K  +A+ +  V++ V+ +V+ G   F   G+  P        N+  S   
Sbjct: 118 EGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHAHGNKMSSCML 177

Query: 159 TWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
            +++GN ++  L S+GAFEVY  ++ ++SK++ GR P   E   L+  QLA
Sbjct: 178 VFMLGNLVEQSLISTGAFEVYLGNEQIWSKIESGRVPSPQEFMQLIDAQLA 228

Caenorhabditis elegans (taxid: 6239)

>sp|Q502K9|SELT2_DANRE Selenoprotein T2 OS=Danio rerio GN=selt2 PE=2 SV=3

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 1/168 (0%)

Query: 46  SENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104
            EN  PD  +Q+      Y G  +   +C S  Y        R +   +P I +   NYP
Sbjct: 34  QENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYP 93

Query: 105 PPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGN 164
           P    + L   +   ++  I ++V G+  F M GM  P  +   + N+  S    + I N
Sbjct: 94  PKPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKIFSCLMAFFISN 153

Query: 165 FLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212
            L++   S+GAFE+  ND  ++SKL+ G  P   EL  ++   L  ++
Sbjct: 154 MLETHFLSTGAFEITLNDIPIWSKLQSGYVPNIQELFQILDNHLKMNQ 201

Danio rerio (taxid: 7955)

>sp|Q6PBD1|SELT_XENTR Selenoprotein T OS=Xenopus tropicalis GN=selt PE=2 SV=3

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%)

Query: 53  FPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
            PS+K+      G  +    C S  YR       R++  ++P I +   NY P    R +
Sbjct: 31  LPSKKLKMQYTAGPLLKFQICVSUGYRRVFEDYMRVISQRYPDIRIEGENYLPHPIYRNI 90

Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
           A  +   ++ +IG+++AG+  F   GM  P  +   + N+  +    + + N +++   S
Sbjct: 91  ASFLSVFKLVLIGLIIAGKDPFAFFGMQAPSVWQWGQENKVYACMMVFFVSNMIENQCMS 150

Query: 173 SGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           +GAFE+  ND  V+SKL+ G  P   +L  ++  ++  +  +D +
Sbjct: 151 TGAFEITLNDVPVWSKLESGHLPSVQQLVQIIDNEMKLNVHMDAI 195

Xenopus tropicalis (taxid: 8364)

>sp|Q1H5H1|SELT_RAT Selenoprotein T OS=Rattus norvegicus GN=Selt PE=2 SV=2

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 27  PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 87  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146

Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           GAFE+  ND  V+SKL+ G  P   +L  ++  ++  +  +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190

Rattus norvegicus (taxid: 10116)

>sp|P62342|SELT_MOUSE Selenoprotein T OS=Mus musculus GN=Selt PE=2 SV=2

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 27  PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 87  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146

Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           GAFE+  ND  V+SKL+ G  P   +L  ++  ++  +  +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190

Mus musculus (taxid: 10090)

>sp|P62341|SELT_HUMAN Selenoprotein T OS=Homo sapiens GN=SELT PE=2 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 54  PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           PS+++      G  +    C S  YR       R++  ++P I +   NY P    R +A
Sbjct: 27  PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
             +   ++ +IG+++ G+  F   GM  P  +   + N+  +    + + N +++   S+
Sbjct: 87  SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146

Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           GAFE+  ND  V+SKL+ G  P   +L  ++  ++  +  +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
307135926	227	selenoprotein t precursor [Cucumis melo	0.986	0.964	0.682	6e-86
449439880	227	PREDICTED: selT-like protein-like [Cucum	0.990	0.969	0.672	4e-80
30692842	209	SelT-like protein [Arabidopsis thaliana]	0.900	0.956	0.685	9e-79
388522965	230	unknown [Lotus japonicus]	0.972	0.939	0.656	1e-78
351727377	228	uncharacterized protein LOC100527643 pre	0.959	0.934	0.663	2e-78
224139124	223	predicted protein [Populus trichocarpa]	0.941	0.937	0.683	3e-78
118487159	223	unknown [Populus trichocarpa]	0.941	0.937	0.683	3e-78
51970218	209	putative protein [Arabidopsis thaliana]	0.873	0.928	0.705	3e-78
225439410	227	PREDICTED: selT-like protein [Vitis vini	0.990	0.969	0.725	5e-75
297793399	227	hypothetical protein ARALYDRAFT_495986 [	0.959	0.938	0.660	3e-74

>gi|307135926|gb|ADN33788.1| selenoprotein t precursor [Cucumis melo subsp. melo] gi|307136469|gb|ADN34273.1| selenoprotein t [Cucumis melo subsp. melo]

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 187/230 (81%), Gaps = 11/230 (4%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHH-----HHKPPIPSENLTP-DFP 54
           MDR  I+LLGLP+FLL +D++NLFTPPPP P   A++H     H++P   S    P +FP
Sbjct: 1   MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKP---AANHPPPRVHYQPKSQSVIQEPLEFP 57

Query: 55  SQK--IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
           ++K  ++GGIG GS +NINFC SCSYRGTAI MK MLE+ FPG++V+LANYPPP PKRLL
Sbjct: 58  TEKRSVIGGIGQGSVININFCVSCSYRGTAINMKNMLESSFPGVEVILANYPPPFPKRLL 117

Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
           +KVVP VQ G+IGI+VAGE IFP LGM PPPWYYSLRANRFGSIASTWL GNF+QSFLQS
Sbjct: 118 SKVVPVVQFGIIGIIVAGEHIFPRLGMVPPPWYYSLRANRFGSIASTWLFGNFVQSFLQS 177

Query: 173 SGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS 222
           SGAFEVYCN ++VFSKLKE RFPGEIEL+DL+ ++L+ SR VD  G VWS
Sbjct: 178 SGAFEVYCNGEMVFSKLKEQRFPGEIELRDLIGRKLSGSRFVDNSGGVWS 227

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439880|ref|XP_004137713.1| PREDICTED: selT-like protein-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 154/229 (67%), Positives = 185/229 (80%), Gaps = 9/229 (3%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASH-----HHHKPPIPSENLTPDFPS 55
           MDR  ++LLGLP+ LL +D++NLFTPPPP P  +A+H     H+     P     P+FP+
Sbjct: 1   MDRTQMVLLGLPILLLFTDIVNLFTPPPPKP--AANHPPPRVHYQPKSQPVIQEPPEFPT 58

Query: 56  QK--IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
           +K  ++GGIG GS +NINFC SCSYR TAITMK MLE+ FPG++V+LANYPPPLPKRLL+
Sbjct: 59  EKRSVIGGIGQGSVININFCVSCSYRSTAITMKNMLESSFPGVEVILANYPPPLPKRLLS 118

Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
           KVVPAVQ G+IGI++AGE IFP LGM PPPWYYSLRANRFGSIASTWL GNF+QSFLQSS
Sbjct: 119 KVVPAVQFGIIGIIMAGEHIFPRLGMVPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSS 178

Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSVWS 222
           GAFEVYCN ++VFSKLKE RFPGEIEL+DL+ ++L+  R VD  G VWS
Sbjct: 179 GAFEVYCNGEMVFSKLKEQRFPGEIELRDLIGRKLSGLRFVDNSGGVWS 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692842|ref|NP_190314.2| SelT-like protein [Arabidopsis thaliana] gi|84028261|sp|Q9STZ2.2|SELT_ARATH RecName: Full=SelT-like protein; Flags: Precursor gi|34365637|gb|AAQ65130.1| At3g47300 [Arabidopsis thaliana] gi|51969052|dbj|BAD43218.1| putative protein [Arabidopsis thaliana] gi|51970866|dbj|BAD44125.1| putative protein [Arabidopsis thaliana] gi|332644742|gb|AEE78263.1| SelT-like protein [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 10/210 (4%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
           CN +LVFSKLKEGRFPGEIEL+DL++  + 
Sbjct: 172 CNGELVFSKLKEGRFPGEIELRDLISGTMT 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522965|gb|AFK49544.1| unknown [Lotus japonicus]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/221 (65%), Positives = 175/221 (79%), Gaps = 5/221 (2%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTP--DFPSQKI 58
           MDR  ILL+GLP+FL  SD+ NLF P PPP P +  H HH  P P  +L    DFP+QK 
Sbjct: 1   MDRTQILLVGLPIFLFFSDVFNLFAPAPPPKP-THHHRHHPIPQPQPHLQKPLDFPAQKQ 59

Query: 59  --VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116
             +G IG G+TVNI+FC SCSY+G A+T+K MLE+ FPGI+VVLANYPPPLPKR+L+K++
Sbjct: 60  SGIGPIGVGNTVNIDFCTSCSYKGNAVTVKNMLESVFPGINVVLANYPPPLPKRVLSKII 119

Query: 117 PAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAF 176
           P VQ G++  +VAG+QIFP LG  PPPWYYSLRAN+F SIASTWL  NF+QSFLQSSGAF
Sbjct: 120 PVVQTGIVVSIVAGDQIFPRLGFVPPPWYYSLRANKFRSIASTWLFANFIQSFLQSSGAF 179

Query: 177 EVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           EVYCN +LVFSKLKE RFPGEIELKDLV ++LA++R  + V
Sbjct: 180 EVYCNGELVFSKLKENRFPGEIELKDLVERRLANTRFFNSV 220

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727377|ref|NP_001235367.1| uncharacterized protein LOC100527643 precursor [Glycine max] gi|255632840|gb|ACU16773.1| unknown [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/226 (66%), Positives = 180/226 (79%), Gaps = 13/226 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPI-----PSENLTP--DF 53
           MDR  ILL+GLP+FL  SD+LNLF+P P P P     HHH PPI     P  +L    +F
Sbjct: 1   MDRTQILLVGLPIFLFFSDILNLFSPQPSPKPT----HHHLPPIHPKPHPQPHLQQPLEF 56

Query: 54  PSQKI--VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRL 111
           P+QK   +G IG G+TV+I+FC SCSY+G A+T+K MLE +FPGI+VVLANYPPPLPKR+
Sbjct: 57  PTQKQSGIGLIGIGNTVSIDFCTSCSYKGNAVTVKNMLEFEFPGINVVLANYPPPLPKRI 116

Query: 112 LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQ 171
           L KVVP VQ G+I  +VAG+QIFP LG+TPPPWYYSLRAN+F SIASTWL+ NFLQSFLQ
Sbjct: 117 LGKVVPVVQTGIIVAIVAGDQIFPRLGITPPPWYYSLRANKFRSIASTWLLTNFLQSFLQ 176

Query: 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
           SSGAFEVYCN DLVFSKLKE RFPGEIEL++LV ++LA++R V G+
Sbjct: 177 SSGAFEVYCNGDLVFSKLKENRFPGEIELRELVGRRLANTRFVSGI 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139124|ref|XP_002322986.1| predicted protein [Populus trichocarpa] gi|222867616|gb|EEF04747.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/221 (68%), Positives = 174/221 (78%), Gaps = 12/221 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHH-----HKPPIPSENLTPDFPS 55
           MDR  ILLLGLP+FL CSD+LNLFT  PPP P    HH+      KP    +     FP+
Sbjct: 1   MDRSQILLLGLPIFLFCSDILNLFTTSPPPKPNPNDHHNIHQFQTKPQQVLQQQPLQFPT 60

Query: 56  QK---IVGG---IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
           QK   IVGG   IG+G+ +NINFC SCSYRGTA+TMK MLE++FPGI V+LAN+P PLPK
Sbjct: 61  QKSSTIVGGLGNIGFGNVININFCVSCSYRGTAVTMKNMLESEFPGIQVILANHPAPLPK 120

Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQS 168
           RLL+KVVPAVQ G+IGI++AGEQIFP LG   PP WYYSLRANRFGSIASTWL GNF+QS
Sbjct: 121 RLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPSWYYSLRANRFGSIASTWLFGNFIQS 180

Query: 169 FLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
           FLQSSGAFEV+CN +LVFSKL E RFPGEIEL+D+V K+LA
Sbjct: 181 FLQSSGAFEVFCNGELVFSKLMEHRFPGEIELRDVVGKRLA 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487159|gb|ABK95408.1| unknown [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/221 (68%), Positives = 174/221 (78%), Gaps = 12/221 (5%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHH-----HKPPIPSENLTPDFPS 55
           MDR  ILLLGLP+FL CSD+LNLFT  PPP P    HH+      KP    +     FP+
Sbjct: 1   MDRSQILLLGLPIFLFCSDILNLFTTSPPPKPNPNDHHNIHQFQTKPQQVLQQQPLQFPT 60

Query: 56  QK---IVGG---IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
           QK   IVGG   IG+G+ +NINFC SCSYRGTA+TMK MLE++FPGI V+LAN+P  LPK
Sbjct: 61  QKSSTIVGGLGNIGFGNVININFCVSCSYRGTAVTMKNMLESEFPGIQVILANHPASLPK 120

Query: 110 RLLAKVVPAVQIGVIGIVVAGEQIFPMLGM-TPPPWYYSLRANRFGSIASTWLIGNFLQS 168
           RLL+KVVPAVQ G+IGI++AGEQIFP LG   PPPWYYSLRANRFGSIASTWL GNF+QS
Sbjct: 121 RLLSKVVPAVQFGIIGIILAGEQIFPRLGFAAPPPWYYSLRANRFGSIASTWLFGNFIQS 180

Query: 169 FLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
           FLQSSGAFEV+CN +LVFSKL E RFPGEIEL+D+V K+LA
Sbjct: 181 FLQSSGAFEVFCNGELVFSKLMEHRFPGEIELRDVVGKRLA 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970218|dbj|BAD43801.1| putative protein [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 169/204 (82%), Gaps = 10/204 (4%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
           MD+  ++LLGLP+FLLCSDL NLFTPPPP         H  PP  SE L  DFP+QK  G
Sbjct: 1   MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52

Query: 61  GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
            +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP  Q
Sbjct: 53  -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
           +GVIG+++ GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV 
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171

Query: 180 CNDDLVFSKLKEGRFPGEIELKDL 203
           CN +LVFSKLKEGRFPGEIEL+DL
Sbjct: 172 CNGELVFSKLKEGRFPGEIELRDL 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439410|ref|XP_002264265.1| PREDICTED: selT-like protein [Vitis vinifera] gi|296083168|emb|CBI22804.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 191/226 (84%), Gaps = 6/226 (2%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKI-- 58
           MDR  +LL+GLPLFL  SD++NLFTPPPP PP    H   +P   S  L  DFP+QK   
Sbjct: 1   MDRAQLLLVGLPLFLFFSDIINLFTPPPPKPPPHHHHQQPQPKPQSAPL--DFPTQKESG 58

Query: 59  VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPA 118
           +GGIG+G+TVNINFC+SCSYRG A+TMK MLE+QFPG+ VVLANYPPPLPKRLL+KVVP 
Sbjct: 59  IGGIGFGNTVNINFCSSCSYRGNAVTMKNMLESQFPGVTVVLANYPPPLPKRLLSKVVPV 118

Query: 119 VQIGVIGIVVAGEQIFPMLG-MTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFE 177
           VQIGVIGIV+AGEQIFP LG + PPPWYYSLRANRFG+I++TWL+GNFLQSFLQSSGAFE
Sbjct: 119 VQIGVIGIVMAGEQIFPRLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFLQSSGAFE 178

Query: 178 VYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS-VWS 222
           VYCN +LVFSKLK+ RFPGEIELKDLV ++L +SR+VD VG+ VWS
Sbjct: 179 VYCNGELVFSKLKQQRFPGEIELKDLVGQRLVASRIVDDVGAGVWS 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793399|ref|XP_002864584.1| hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata] gi|297310419|gb|EFH40843.1| hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 179/227 (78%), Gaps = 14/227 (6%)

Query: 1   MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHH------KPP--IPSENLTPD 52
           MDR  ++LLGLP+FL CSDL NLFTPPPP P     H         +P   IP    T D
Sbjct: 1   MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPAAIIPE---TLD 57

Query: 53  FPSQKI--VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKR 110
           FPSQK   +G IGYG+TV INFC SCSY+GTA+TMK+MLET FPG+DV+LANYPPP PKR
Sbjct: 58  FPSQKTNGLGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKR 117

Query: 111 LLAKVVPAVQIGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSF 169
           LLAK VP  Q+GVIG++VAG++I PM+G+T PP W++SLRANRFGS+ASTWLIGNFLQS+
Sbjct: 118 LLAKFVPVAQMGVIGMIVAGDRILPMIGITHPPAWFHSLRANRFGSMASTWLIGNFLQSY 177

Query: 170 LQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDG 216
           LQSSGAFEV+CN +LVFSKLKEGRFPGEIEL+DL++K L    ++ G
Sbjct: 178 LQSSGAFEVHCNGELVFSKLKEGRFPGEIELRDLISKTLTRPSILAG 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2178873	228	AT5G58640 [Arabidopsis thalian	0.752	0.732	0.660	3.6e-57
TAIR|locus:2099540	209	SELT "SELT-like protein precur	0.698	0.741	0.687	2.3e-55
FB|FBgn0031670	198	CG3887 [Drosophila melanogaste	0.666	0.747	0.310	8.8e-15
WB|WBGene00007955	247	C35C5.3 [Caenorhabditis elegan	0.644	0.578	0.265	2.4e-12
WB|WBGene00009238	216	F28H7.4 [Caenorhabditis elegan	0.653	0.671	0.262	6.4e-12
ZFIN|ZDB-GENE-030411-4	210	selt2 "selenoprotein T, 2" [Da	0.725	0.766	0.274	2.8e-11
RGD|1306682	115	Mien1 "migration and invasion	0.184	0.356	0.439	6e-10
UNIPROTKB|Q148C8	115	MIEN1 "Migration and invasion	0.162	0.313	0.512	8.6e-10
UNIPROTKB|E2QZ37	115	C17orf37 "Uncharacterized prot	0.162	0.313	0.512	2.2e-09
UNIPROTKB|Q9BRT3	115	MIEN1 "Migration and invasion	0.162	0.313	0.512	2.2e-09

TAIR|locus:2178873 AT5G58640 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 113/171 (66%), Positives = 135/171 (78%)

Query:    50 TPDFPSQKI--VGG-IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106
             T DFPSQK   +GG IGYG+TV INFC SCSY+GTA+TMK+MLET FPG+DV+LANYPPP
Sbjct:    55 TLDFPSQKTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPP 114

Query:   107 LPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNF 165
              PKRLLAK                ++I PM+G+T PP W++SLRANRFGS+ASTWLIGNF
Sbjct:   115 APKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNF 174

Query:   166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDG 216
             LQS+LQSSGAFEV+CN + VFSKLKEGRFPGEIEL+DL++K L    ++ G
Sbjct:   175 LQSYLQSSGAFEVHCNGEPVFSKLKEGRFPGEIELRDLISKTLTRPSILTG 225

GO:0008430 "selenium binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099540 SELT "SELT-like protein precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 108/157 (68%), Positives = 127/157 (80%)

Query:    50 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK 109
             T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PK
Sbjct:    42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPK 100

Query:   110 RLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQS 168
             R+LAK                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQS
Sbjct:   101 RILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQS 160

Query:   169 FLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 205
             FLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   161 FLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

FB|FBgn0031670 CG3887 [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 46/148 (31%), Positives = 67/148 (45%)

Query:    61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXX 120
             G     T+   +C SC YR        +L  ++P I V   NY PP     L+K      
Sbjct:    37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALK 96

Query:   121 XXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYC 180
                          F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  
Sbjct:    97 IIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITL 156

Query:   181 NDDLVFSKLKEGRFPGEIELKDLVAKQL 208
             ND  V+SKL+ GRFP    L  ++   L
Sbjct:   157 NDVPVWSKLQTGRFPSPEVLFQIIDNHL 184

GO:0005575 "cellular_component" evidence=ND

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

WB|WBGene00007955 C35C5.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/143 (26%), Positives = 64/143 (44%)

Query:    67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXX 126
             T+ I +C SC Y+          + ++P + +  AN+ P L K  +A+            
Sbjct:    86 TLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVL 145

Query:   127 XXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVF 186
                    F   G+  P        N+  S    +++GN ++  L S+GAFEVY  ++ ++
Sbjct:   146 VLGGINPFERFGLGYPQILQHAHGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQIW 205

Query:   187 SKLKEGRFPGEIELKDLVAKQLA 209
             SK++ GR P   E   L+  QLA
Sbjct:   206 SKIESGRVPSPQEFMQLIDAQLA 228

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

WB|WBGene00009238 F28H7.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 38/145 (26%), Positives = 64/145 (44%)

Query:    68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXX 127
             + I +C SC Y+          + ++PG+ +   N+ P   K  LA+             
Sbjct:    72 LTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIV 131

Query:   128 XXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFS 187
                   F  +G   P    +   NRF      ++IGN  +S L S+GAFE++  D  ++S
Sbjct:   132 ITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFESTLSSTGAFEIFLGDKQIWS 191

Query:   188 KLKEGRFPGEIELKDLVAKQLASSR 212
             K+ + R P + E  +L+  QL + R
Sbjct:   192 KISKERVPTQEEFLNLIDLQLKTIR 216

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

ZFIN|ZDB-GENE-030411-4 selt2 "selenoprotein T, 2" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 45/164 (27%), Positives = 67/164 (40%)

Query:    47 ENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105
             EN  PD  +Q+      Y G  +   +C S  Y        R +   +P I +   NYPP
Sbjct:    35 ENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYPP 94

Query:   106 PLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGM-TPPPWYYSLRANRFGSIASTWLIGN 164
                 + L                  +  F M GM TP  W +  + N+  S    + I N
Sbjct:    95 KPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWG-QENKIFSCLMAFFISN 153

Query:   165 FLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208
              L++   S+GAFE+  ND  ++SKL+ G  P   EL  ++   L
Sbjct:   154 MLETHFLSTGAFEITLNDIPIWSKLQSGYVPNIQELFQILDNHL 197

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|1306682 Mien1 "migration and invasion enhancer 1" [Rattus norvegicus (taxid:10116)]

 Score = 88 (36.0 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query:   166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206
             ++S L  +GAFE+  N  LVFSKL+ G FP E +L + + +
Sbjct:    55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLMEAIRR 95

GO:0005829 "cytosol" evidence=ISO

GO:0008430 "selenium binding" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=ISO

UNIPROTKB|Q148C8 MIEN1 "Migration and invasion enhancer 1" [Bos taurus (taxid:9913)]

 Score = 86 (35.3 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query:   166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204
             ++S L  +GAFE+  N  LVFSKL+ G FP E   KDL+
Sbjct:    55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYE---KDLI 90

GO:0005829 "cytosol" evidence=ISS

GO:0051491 "positive regulation of filopodium assembly" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|E2QZ37 C17orf37 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 86 (35.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query:   166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204
             ++S L  +GAFE+  N  LVFSKL+ G FP E   KDL+
Sbjct:    55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYE---KDLI 90

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q9BRT3 MIEN1 "Migration and invasion enhancer 1" [Homo sapiens (taxid:9606)]

 Score = 86 (35.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query:   166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204
             ++S L  +GAFE+  N  LVFSKL+ G FP E   KDL+
Sbjct:    55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYE---KDLI 90

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0051491 "positive regulation of filopodium assembly" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STZ2	SELT_ARATH	No assigned EC number	0.6857	0.9009	0.9569	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SELT	SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding; SELT-LIKE PROTEIN PRECURSOR (SELT); FUNCTIONS IN- selenium binding; INVOLVED IN- cell redox homeostasis; CONTAINS InterPro DOMAIN/s- SelT/selW/selH selenoprotein (InterPro-IPR011893); BEST Arabidopsis thaliana protein match is- selenoprotein-related (TAIR-AT5G58640.1); Has 176 Blast hits to 176 proteins in 54 species- Archae - 0; Bacteria - 2; Metazoa - 119; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (209 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G05720	selenoprotein family protein; selenoprotein family protein; FUNCTIONS IN- selenium binding; INV [...] (163 aa)				•			•		0.802
	AT5G41800	amino acid transporter family protein; amino acid transporter family protein; FUNCTIONS IN- ami [...] (452 aa)							•		0.565
	HMT3	HMT3; homocysteine S-methyltransferase; homocysteine S-methyltransferase (HMT3) ; Catalyzes met [...] (347 aa)							•		0.561

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam10262	76	pfam10262, Rdx, Rdx family	5e-12
TIGR02174	72	TIGR02174, CXXU_selWTH, selT/selW/selH selenoprote	6e-10
TIGR02174	72	TIGR02174, CXXU_selWTH, selT/selW/selH selenoprote	2e-08
COG3526	99	COG3526, COG3526, Uncharacterized protein conserve	0.002

>gnl|CDD|204425 pfam10262, Rdx, Rdx family

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 165 FLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207
            ++    + GAFEV  N +L++SK ++G FP   ELK LV   
Sbjct: 34  EVELSPGTGGAFEVTVNGELIWSKKEDGGFPEAKELKQLVRDA 76

This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium. Length = 76

>gnl|CDD|233762 TIGR02174, CXXU_selWTH, selT/selW/selH selenoprotein domain

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 169 FLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204
              ++GAFEV  N  LV+SKL+ G FP   ELK L+
Sbjct: 36  TPPTTGAFEVTVNGQLVWSKLRGGGFPEPEELKQLI 71

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Length = 72

>gnl|CDD|233762 TIGR02174, CXXU_selWTH, selT/selW/selH selenoprotein domain

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105
           V + +C SC Y+  A  +K+ L  +FP +++   N PP
Sbjct: 1   VEVEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENTPP 38

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Length = 72

>gnl|CDD|226057 COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 158 STWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204
           + W+    L +F            + G FE+ C+  L++ + ++G FP    LK  V
Sbjct: 22  AAWMAQELLSTFADDLGEVALIPGTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRV 78

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG3286	226	consensus Selenoprotein T [General function predic	100.0
PF10262	76	Rdx: Rdx family; InterPro: IPR011893 This entry re	99.9
TIGR02174	72	CXXU_selWTH selT/selW/selH selenoprotein domain. T	99.89
COG3526	99	Uncharacterized protein conserved in bacteria [Pos	99.59

>KOG3286 consensus Selenoprotein T [General function prediction only]

Probab=100.00  E-value=2.5e-70  Score=471.67  Aligned_cols=217  Identities=40%  Similarity=0.706  Sum_probs=193.6

Q ss_pred             CcchhHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcc---cccccCCccEEEEEecCCC
Q 027523            1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIP-SENLTPDFPSQK---IVGGIGYGSTVNINFCASC   76 (222)
Q Consensus         1 ~~~~~~~~~g~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~g~tV~i~YC~sC   76 (222)
                      |||+|++++|||+|++|||+|++|+|+.+.--++.|+|.++..-| ..++..+++.||   ..++++.|+||+|+||+||
T Consensus         1 M~r~~~iiiGl~~f~~~~Dvf~~~tp~e~s~e~h~~~~~~~~~~p~~~~e~~~~~g~ke~gv~~~~~~~ptl~i~fCvSC   80 (226)
T KOG3286|consen    1 MSRFGLIIIGLPFFLSCSDVFRLFTPPEHSDENHQSPKDDFEAEPDEIDETSFAQGQKESGVGKHIKYGPTLEINFCVSC   80 (226)
T ss_pred             CCccceeeehhHHHHHHHHHHHccCCCcccccccCCCCccccccccccchhcccCcccccCcccccccCCcEEEEEEEec
Confidence            999999999999999999999999944432111111121121122 677899999999   3346789999999999999


Q ss_pred             CchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhhhhcchhhHH
Q 027523           77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSI  156 (222)
Q Consensus        77 gY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~~~~NK~~~~  156 (222)
                      |||++|++++++|+++||+++|+|+|||||+||++|||+++++|+++|++|+.|+++|+++|+++|+||++.+.||+++|
T Consensus        81 gYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~iwqh~~aNkf~sc  160 (226)
T KOG3286|consen   81 GYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSIWQHAQANKFYSC  160 (226)
T ss_pred             CcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCc
Q 027523          157 ASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV  217 (222)
Q Consensus       157 ~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~  217 (222)
                      |++||+||++|++++|||||||++||++||||+++||+|+++|+.|+|++.+...+.+...
T Consensus       161 m~vf~lGN~les~L~StGAFEI~lndepVwSKl~~gr~Ps~~el~qlid~~L~~~~~~~~~  221 (226)
T KOG3286|consen  161 MMVFFLGNMLESQLISTGAFEITLNDEPVWSKLESGRLPSPQELVQLIDNQLKLNVKLPGN  221 (226)
T ss_pred             HHHHHHHHHHHHHhhccCcEEEEECCEeeeehhhccCCCCHHHHHHHHHHhhhheeecCCC
Confidence            9999999999999999999999999999999999999999999999999998777666543

>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life

Probab=99.90  E-value=3.2e-24  Score=158.26  Aligned_cols=74  Identities=42%  Similarity=0.754  Sum_probs=67.0

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCC--ceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChh
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP  143 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~--i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~  143 (222)
                      ++|+|+||.+|||+++|.++++.|+++||+  .+|++                                           
T Consensus         1 p~V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~-------------------------------------------   37 (76)
T PF10262_consen    1 PKVTIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL-------------------------------------------   37 (76)
T ss_dssp             EEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE-------------------------------------------
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE-------------------------------------------
Confidence            589999999999999999999999999999  67764                                           


Q ss_pred             hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHH
Q 027523          144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ  207 (222)
Q Consensus       144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~  207 (222)
                                               .+.++|+|||++||++||||+++||||+.+||+++|+++
T Consensus        38 -------------------------~~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~~   76 (76)
T PF10262_consen   38 -------------------------SPGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRDH   76 (76)
T ss_dssp             -------------------------EEESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHHH
T ss_pred             -------------------------EeccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhcC
Confidence                                     246899999999999999999999999999999999985

Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.

>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain

Probab=99.89  E-value=4.7e-23  Score=151.46  Aligned_cols=72  Identities=42%  Similarity=0.729  Sum_probs=66.0

Q ss_pred             EEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhh
Q 027523           68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYS  147 (222)
Q Consensus        68 V~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~  147 (222)
                      |+|+||.+|||+.+|.++++.|+++||+..++++++                                            
T Consensus         1 V~IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~--------------------------------------------   36 (72)
T TIGR02174         1 VEIEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENT--------------------------------------------   36 (72)
T ss_pred             CEEEECCCCCChHHHHHHHHHHHHHCCCCeeEEeee--------------------------------------------
Confidence            689999999999999999999999999987766433                                            


Q ss_pred             hhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523          148 LRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA  205 (222)
Q Consensus       148 ~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~  205 (222)
                                            ..++|+|||++||++||||+++|+||+.+||+++|+
T Consensus        37 ----------------------~~~~G~Fev~~~g~~v~sk~~~~~fp~~~~~~~~ir   72 (72)
T TIGR02174        37 ----------------------PPTTGAFEVTVNGQLVWSKLRGGGFPEPEELKQLIR   72 (72)
T ss_pred             ----------------------cCCCcEEEEEECCEEEEEeccCCCCCCHHHHHHhhC
Confidence                                  347999999999999999999999999999999985

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.

>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.6e-15  Score=115.42  Aligned_cols=62  Identities=26%  Similarity=0.595  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhhhccC----------CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcC
Q 027523          157 ASTWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVG  218 (222)
Q Consensus       157 ~~~~~~~n~l~~~l~----------stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~  218 (222)
                      -++||+||+|++|..          ++|.|||++||.+||.++.+|+||++++|+|+||+.++|+|++||+.
T Consensus        21 Ra~WmaQElL~TF~~dlgeV~L~PgTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrvRD~idPeRDLGH~D   92 (99)
T COG3526          21 RAAWMAQELLSTFADDLGEVALIPGTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRVRDLIDPERDLGHVD   92 (99)
T ss_pred             HHHHHHHHHHHHHHhhhheEEEecCCCceEEEEECCEEEEEeeccCCCCchHHHHHHHHhhcCcccccCCCC
Confidence            478999999999875          79999999999999999999999999999999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	1e-07
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	2e-07
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	5e-07
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	7e-07
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	4e-04
3dex_A	107	SAV_2001; alpha-beta protein, structural genomics,	8e-07
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	2e-06

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23 Length = 105

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 146 YSLRANRFGSIASTWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFP 195
           + LRA         W+    LQ+F            + G FE+  +  +++ + ++G FP
Sbjct: 20  WLLRA--------GWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFP 71

Query: 196 GEIELKDLVAKQLASSR 212
           G  ELK  +   +   R
Sbjct: 72  GPKELKQRIRDLIDPER 88

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae} Length = 105

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 158 STWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207
           S WL    L +F +          + G FE++CN   ++ + +EG FP    LK  V   
Sbjct: 20  SAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDL 79

Query: 208 LASSR 212
           +   R
Sbjct: 80  IDPER 84

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A Length = 104

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 158 STWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207
           + WL    L +F            + G F + C+   V+ +  +G FP    LK  V  +
Sbjct: 22  AAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDR 81

Query: 208 LASSR 212
           +   R
Sbjct: 82  IDPQR 86

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} Length = 96

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 171 QSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
           Q +G FEV     LV SK +   +         +   + 
Sbjct: 43  QVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIK 81

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} Length = 96

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 68  VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
           V + +  +C Y+   + +K  LE +FPG   +     P                G   + 
Sbjct: 5   VRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQ-------------VTGFFEVT 51

Query: 128 VAGEQIF 134
           VAG+ + 
Sbjct: 52  VAGKLVH 58

>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} Length = 107

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 158 STWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207
           + WL    L +F            + G F V  +D++V+ + +E  FP    +K LV  +
Sbjct: 29  AAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDR-REQGFPEPTAVKRLVRDR 87

Query: 208 LASSR 212
           +A  +
Sbjct: 88  VAPEK 92

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis} Length = 108

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 158 STWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207
           + W+    L +F            + G F ++ N   ++ +  +G FP    LK  V   
Sbjct: 25  AAWMAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDH 84

Query: 208 LASSR 212
           L   R
Sbjct: 85  LDPGR 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	99.92
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	99.92
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	99.91
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	99.91
3dex_A	107	SAV_2001; alpha-beta protein, structural genomics,	99.88
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	99.87
2ljk_A	117	Protein C17ORF37; MIEN1, oncoprotein, signaling pr	99.87
2a4h_A	126	Selenoprotein SEP15; redox, oxidoreductase; NMR {D	95.31
4gqo_A	433	LMO0859 protein; virulence, pathogenesis, vaccine	94.67
2heu_A	401	Sugar ABC transporter, sugar-binding protein; peri	94.18
3k01_A	412	Acarbose/maltose binding protein GACH; ABC transpo	93.44
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	93.16
3quf_A	414	Extracellular solute-binding protein, family 1; st	90.81
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	90.75
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	88.22
2joi_A	118	Hypothetical protein TA0095; structural genomics,	88.0
4g68_A	456	ABC transporter; transport protein; HET: XYS; 1.80	86.83
4hw8_A	420	Bacterial extracellular solute-binding protein, P;	85.83
3k6v_A	354	Solute-binding protein MA_0280; MODA, molybdate, p	85.64
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	85.34
1ub1_A	133	MECP2, attachment region binding protein; chicken	84.94
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	84.91
2vgq_A	477	Maltose-binding periplasmic protein, mitochondrial	83.49
2qry_A	330	Thiamine-binding periplasmic protein; thiamin bind	81.68
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	81.25
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	81.06

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A

Probab=99.92  E-value=1.9e-25  Score=174.88  Aligned_cols=87  Identities=21%  Similarity=0.379  Sum_probs=75.2

Q ss_pred             ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP  142 (222)
Q Consensus        65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P  142 (222)
                      .++|+|+||++|+|+.+|..|++.|+++||+.  .|+                                           
T Consensus         5 ~p~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~v~-------------------------------------------   41 (104)
T 2oka_A            5 KPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVC-------------------------------------------   41 (104)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEE-------------------------------------------
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHHcCcccceEE-------------------------------------------
Confidence            47999999999999999999999999999984  343                                           


Q ss_pred             hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523          143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS  219 (222)
Q Consensus       143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~  219 (222)
                                               ..++++|+|||++||++||||+++||||+.+||+++|+++++|+|+||++.+
T Consensus        42 -------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~lgh~d~   93 (104)
T 2oka_A           42 -------------------------LEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRDLGHNDR   93 (104)
T ss_dssp             -------------------------EEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCSSCC------
T ss_pred             -------------------------EEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccCCCccc
Confidence                                     2356899999999999999999999999999999999999999999998763

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23

Probab=99.92  E-value=2.9e-25  Score=174.00  Aligned_cols=86  Identities=22%  Similarity=0.458  Sum_probs=76.3

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChh
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP  143 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~  143 (222)
                      ++|+|+||.+|+|+.+|..|++.|+++||+.  .|+                                            
T Consensus         8 ~~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~V~--------------------------------------------   43 (105)
T 2fa8_A            8 PRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVS--------------------------------------------   43 (105)
T ss_dssp             CEEEEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEE--------------------------------------------
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCcccceEE--------------------------------------------
Confidence            7899999999999999999999999999984  343                                            


Q ss_pred             hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523          144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS  219 (222)
Q Consensus       144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~  219 (222)
                                              ..++++|+|||++||++||||+++||||+++||+++|+++++|+|+|+|+.+
T Consensus        44 ------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i~p~~~lgh~d~   95 (105)
T 2fa8_A           44 ------------------------LIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLGHVDR   95 (105)
T ss_dssp             ------------------------EEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCCCC----
T ss_pred             ------------------------EEcCCCcEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHHhCcCccCCCCCc
Confidence                                    2256899999999999999999999999999999999999999999998864

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}

Probab=99.91  E-value=1.8e-25  Score=172.46  Aligned_cols=89  Identities=21%  Similarity=0.345  Sum_probs=78.3

Q ss_pred             CccEEEEEecCCCCchhhHHHHHHHHHHhCCC-ceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPG-IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP  142 (222)
Q Consensus        64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~-i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P  142 (222)
                      ++.+|+|+||++|||+.+|.++++.|+++||+ +.|+++                                         
T Consensus         1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~-----------------------------------------   39 (96)
T 2npb_A            1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGE-----------------------------------------   39 (96)
T ss_dssp             CCEEEEEECCCCSCHHHHHHHHHHHHHHHSBTTEEEEEC-----------------------------------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEE-----------------------------------------
Confidence            45789999999999999999999999999999 777663                                         


Q ss_pred             hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcC
Q 027523          143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVG  218 (222)
Q Consensus       143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~  218 (222)
                                               ..++++|+|||++||++||||+++||||+.+|++++|++++++.+..+-++
T Consensus        40 -------------------------l~p~~~G~FEV~vng~lV~SKk~~ggFP~~~el~q~I~~~i~~~~~~~~~~   90 (96)
T 2npb_A           40 -------------------------GTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIKAALAQCQLE   90 (96)
T ss_dssp             -------------------------CCSSCCSCCEEEETTEEEEETTTTCCSSCSHHHHHHHHHHHHHHHHHHC--
T ss_pred             -------------------------EcCCCCcEEEEEECCEEEEEEecCCCCCChHHHHHHHHHHHhhhhcCCcch
Confidence                                     124689999999999999999999999999999999999999887655443

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}

Probab=99.91  E-value=2.7e-25  Score=174.25  Aligned_cols=87  Identities=23%  Similarity=0.441  Sum_probs=69.9

Q ss_pred             ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP  142 (222)
Q Consensus        65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P  142 (222)
                      .++|+|+||++|+|+.+|..|++.|+++||+.  .|+                                           
T Consensus         3 ~~~V~I~YC~~C~w~~Ra~~laqeLl~tF~~~l~~v~-------------------------------------------   39 (105)
T 2p0g_A            3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVA-------------------------------------------   39 (105)
T ss_dssp             CEEEEEEEETTTTCHHHHHHHHHHHHHHTTTTEEEEE-------------------------------------------
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHHcCcccceEE-------------------------------------------
Confidence            47899999999999999999999999999984  332                                           


Q ss_pred             hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523          143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS  219 (222)
Q Consensus       143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~  219 (222)
                                               ..++++|+|||++||++||||+++||||+.+||+++|+++++|+|+||++.+
T Consensus        40 -------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~lgh~d~   91 (105)
T 2p0g_A           40 -------------------------LHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDPERDLGHVDR   91 (105)
T ss_dssp             -------------------------EEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHTTC-----------
T ss_pred             -------------------------EEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCcccCCCCc
Confidence                                     2356899999999999999999999999999999999999999999998764

>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0

Probab=99.88  E-value=3.3e-23  Score=162.97  Aligned_cols=88  Identities=24%  Similarity=0.420  Sum_probs=70.9

Q ss_pred             CccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 027523           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTP  141 (222)
Q Consensus        64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~  141 (222)
                      ..++|+|+||..|+|..+|..|++.|++.||+.  +|++                                         
T Consensus        11 ~~p~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eVsL-----------------------------------------   49 (107)
T 3dex_A           11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELAL-----------------------------------------   49 (107)
T ss_dssp             CCEEEEEEEETTTTCHHHHHHHHHHHHHHSTTTEEEEEE-----------------------------------------
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHHHhcccccceEEE-----------------------------------------
Confidence            457899999999999999999999999999996  4532                                         


Q ss_pred             hhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCCc
Q 027523          142 PPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSV  220 (222)
Q Consensus       142 P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~~  220 (222)
                                                 .++++|+|||++||++||||+ +|+||+.+||+++||++++|+|+||++.++
T Consensus        50 ---------------------------~Pg~gG~FeV~vdg~lVwsRk-~gGFPd~keLkq~VRd~i~p~~~lgh~d~~  100 (107)
T 3dex_A           50 ---------------------------KPGTGGVFVVRVDDEVVWDRR-EQGFPEPTAVKRLVRDRVAPEKSLGHSERL  100 (107)
T ss_dssp             ---------------------------EEESSSCEEEEETTEEEEEHH-HHCSCCHHHHHHHHHHTTC-----------
T ss_pred             ---------------------------EeCCCceEEEEECCEEEEEec-CCCCCCHHHHHHHHHHHhCCCCCCCCcccc
Confidence                                       356899999999999999999 999999999999999999999999988653

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}

Probab=99.87  E-value=4.6e-23  Score=162.39  Aligned_cols=87  Identities=22%  Similarity=0.388  Sum_probs=69.6

Q ss_pred             ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523           65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP  142 (222)
Q Consensus        65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P  142 (222)
                      .++|+|+||..|+|..+|..|++.|++.||+-  +|+                                           
T Consensus         8 ~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eV~-------------------------------------------   44 (108)
T 2ojl_A            8 PPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVA-------------------------------------------   44 (108)
T ss_dssp             CCEEEEEEETTTTCHHHHHHHHHHHHHHHGGGSSEEE-------------------------------------------
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHHHhcCcccceEE-------------------------------------------
Confidence            57899999999999999999999999999863  343                                           


Q ss_pred             hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523          143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS  219 (222)
Q Consensus       143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~  219 (222)
                                               ..++++|+|||++||++||||+++||||+.+||+++||++++++|+||++.+
T Consensus        45 -------------------------L~P~~~G~FeV~vng~lVwsRk~~ggFPe~keLkq~Vrd~i~p~r~LgH~d~   96 (108)
T 2ojl_A           45 -------------------------LVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLGHIDG   96 (108)
T ss_dssp             -------------------------EEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHHHHHHHHC-----------
T ss_pred             -------------------------EEeCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHHhCcCcccCCCCC
Confidence                                     2256899999999999999999999999999999999999999999998764

>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}

Probab=99.87  E-value=5.4e-23  Score=163.91  Aligned_cols=89  Identities=29%  Similarity=0.622  Sum_probs=79.8

Q ss_pred             cCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 027523           62 IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTP  141 (222)
Q Consensus        62 ~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~  141 (222)
                      .+.+.+|+|+||..|+|+.+|..|++.|++.||+..|++                                         
T Consensus        21 ~~~~vrV~IeYC~~C~~~~ra~~laqeLl~tFp~~~V~l-----------------------------------------   59 (117)
T 2ljk_A           21 PGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIES-----------------------------------------   59 (117)
T ss_dssp             TTCSCCCEEEECTTTTCHHHHHHHHHHHTTTCSSSCCEE-----------------------------------------
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCcceEEE-----------------------------------------
Confidence            367789999999999999999999999999999987754                                         


Q ss_pred             hhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523          142 PPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS  219 (222)
Q Consensus       142 P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~  219 (222)
                                                 ..+++|+|||++||++||||+++||||+.+||+++||++++. +.++++.+
T Consensus        60 ---------------------------~pg~~G~FeV~v~g~li~sk~~~g~FPe~~el~~~Vrd~~~g-~~l~~v~~  109 (117)
T 2ljk_A           60 ---------------------------RLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNG-ETLEKITN  109 (117)
T ss_dssp             ---------------------------EECSSSCEEEETTSSCCBCHHHHCSCCCTTTTTHHHHHHTTT-SCCCCCCC
T ss_pred             ---------------------------ecCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHhhCC-CCchhccc
Confidence                                       257899999999999999999999999999999999999986 46666553

>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23

Probab=95.31  E-value=0.022  Score=45.74  Aligned_cols=30  Identities=13%  Similarity=0.554  Sum_probs=24.0

Q ss_pred             EEEecCCCCchhhHHHHHHHHHH----hCCCceeec
Q 027523           69 NINFCASCSYRGTAITMKRMLET----QFPGIDVVL  100 (222)
Q Consensus        69 ~i~YC~sCgY~~~f~~lk~~L~~----~yP~i~V~G  100 (222)
                      +++.| .|. .++|-|++.+|++    .||++.|.-
T Consensus        24 ~LEvC-~CK-L~~yPeVk~FI~~d~~~~fpnL~vky   57 (126)
T 2a4h_A           24 ILEVC-TCK-FRAYPQIQAFIQSGRPAKFPNLQIKY   57 (126)
T ss_dssp             EEECC-SCT-TTTCTTHHHHHHHTTGGGCTTBCCCC
T ss_pred             EEEEc-chh-hhcCHHHHHHHccchhhhCCceEEEE
Confidence            56669 887 6789999999987    499998753

>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}

Probab=94.67  E-value=0.04  Score=48.19  Aligned_cols=42  Identities=12%  Similarity=0.146  Sum_probs=28.4

Q ss_pred             CccEEEEEecCCCC--chhhHHHHHHHHHHhCCCceeecccCCC
Q 027523           64 YGSTVNINFCASCS--YRGTAITMKRMLETQFPGIDVVLANYPP  105 (222)
Q Consensus        64 ~g~tV~i~YC~sCg--Y~~~f~~lk~~L~~~yP~i~V~G~nYPp  105 (222)
                      .+.+++|.|+..-+  ....++++-+..++++|++.|+-+.+|.
T Consensus        26 ~~gk~~it~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~   69 (433)
T 4gqo_A           26 DNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKE   69 (433)
T ss_dssp             ---CEEEEEEECSCHHHHHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             CCCCEEEEEEeCCCchHHHHHHHHHHHHHHHCcCeEEEEEEcCC
Confidence            34467787775432  3445677777788999999998777764

>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A

Probab=94.18  E-value=0.087  Score=46.02  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=25.2

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccC
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY  103 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nY  103 (222)
                      .||++....+ .....++++.+..++++|++.|+-+.+
T Consensus        19 ~tl~~~~~~~-~~~~~~~~~~~~f~~~~p~i~V~~~~~   55 (401)
T 2heu_A           19 VTIEYFNQKK-EMTKTLEEITRDFEKENPKIKVKVVNV   55 (401)
T ss_dssp             EEEEEECCCG-GGHHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred             EEEEEEecCC-cHHHHHHHHHHHHHHHCcCeEEEEEeC
Confidence            3555543322 233567888888899999999987666

>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*

Probab=93.44  E-value=0.16  Score=44.30  Aligned_cols=47  Identities=23%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~  115 (222)
                      .+|++-...+-.....++++.+..++++|+++|+-+.+|   +..+..|+
T Consensus        28 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~---~~~~~~kl   74 (412)
T 3k01_A           28 GTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVP---FGEANAKF   74 (412)
T ss_dssp             EEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECC---HHHHHHHH
T ss_pred             cEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecC---hHHHHHHH
Confidence            467776665533567788899999999999999877663   34444444

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=93.16  E-value=0.26  Score=36.03  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523          175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL  208 (222)
Q Consensus       175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l  208 (222)
                      .|-++-||+.+..-  .|.  +.++|.+.|++.+
T Consensus        91 t~~~~~~G~~~~~~--~G~--~~~~l~~~l~~~l  120 (121)
T 2j23_A           91 TFVFFKNGQKIDTV--VGA--DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEEETTEEEEEE--ESS--CHHHHHHHHHHHT
T ss_pred             EEEEEECCeEEeeE--cCC--CHHHHHHHHHHhh
Confidence            57777799988753  343  8899999998875

>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}

Probab=90.81  E-value=0.52  Score=40.91  Aligned_cols=44  Identities=9%  Similarity=0.102  Sum_probs=29.0

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523           67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (222)
Q Consensus        67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~  115 (222)
                      +|++..+.+   ...++++.+..++++|++.|+-+.++  ++..+..|+
T Consensus        31 ~l~~~~~~~---~~~~~~~~~~f~~~~p~i~V~~~~~~--~~~~~~~kl   74 (414)
T 3quf_A           31 KISFYSYFK---DNQIGEVVKGFEKKNPDITLDVQYGQ--DPAQYISTL   74 (414)
T ss_dssp             EEEEEESSC---HHHHHHHHHHHHHHCTTEEEEEEECS--SHHHHHHHH
T ss_pred             EEEEEecCC---chHHHHHHHHHHHHCcCeEEEEEeCC--ChHHHHHHH
Confidence            555544432   46788888888999999998876654  334444444

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=90.75  E-value=1.2  Score=35.06  Aligned_cols=35  Identities=11%  Similarity=-0.018  Sum_probs=24.7

Q ss_pred             cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523          174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS  211 (222)
Q Consensus       174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~  211 (222)
                      ..|-|-=||++++...   +..+.++|.+.|++.++..
T Consensus       151 ~~~liD~~G~i~~~~~---g~~~~~~l~~~i~~lL~~~  185 (187)
T 3dwv_A          151 TSFLIDRDGVPVERFS---PGASVKDIEEKLIPLLGSA  185 (187)
T ss_dssp             CEEEECTTSCEEEEEC---TTCCHHHHHHHHHHHC---
T ss_pred             eEEEECCCCCEEEEEC---CCCCHHHHHHHHHHHHhcC
Confidence            4566666899998744   3467889999999988643

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=88.22  E-value=2  Score=32.85  Aligned_cols=35  Identities=11%  Similarity=0.049  Sum_probs=25.5

Q ss_pred             cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523          174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS  211 (222)
Q Consensus       174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~  211 (222)
                      ..|-|.=||++++...  | ..+.+++.+.|++.+..+
T Consensus       136 ~~~lid~~G~i~~~~~--g-~~~~~~l~~~i~~ll~~~  170 (171)
T 3cmi_A          136 EKFLVDKKGKVYERYS--S-LTKPSSLSETIEELLKEV  170 (171)
T ss_dssp             CEEEECSSSCEEEEEC--T-TSCGGGGHHHHHHHHTCC
T ss_pred             eEEEECCCCCEEEEeC--C-CCCHHHHHHHHHHHHHhc
Confidence            4666666899988643  2 457889999999887643

>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}

Probab=88.00  E-value=2.1  Score=33.94  Aligned_cols=40  Identities=5%  Similarity=0.019  Sum_probs=27.6

Q ss_pred             ccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecc
Q 027523           61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA  101 (222)
Q Consensus        61 ~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~  101 (222)
                      ....|..++ +|=..-||++..+.+.+.|++.||.+..+|.
T Consensus        16 ~~~~~~~Mq-eY~~KRG~k~~lerI~~~l~e~Fg~~~~~g~   55 (118)
T 2joi_A           16 NLYFQGHMR-EYPVKKGFPTDYDSIKRKISELGFDVKSEGD   55 (118)
T ss_dssp             -------CE-EECCCSSSCCSHHHHHHHHHHHTCEEEEETT
T ss_pred             hhhhhhhhh-ccccccCCCCcHHHHHHHHHHHcCCceecCC
Confidence            334454443 5777889999999999999999999766664

>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*

Probab=86.83  E-value=0.54  Score=41.85  Aligned_cols=48  Identities=8%  Similarity=0.154  Sum_probs=28.1

Q ss_pred             ccEEEEEecCCC--C-chhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523           65 GSTVNINFCASC--S-YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (222)
Q Consensus        65 g~tV~i~YC~sC--g-Y~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~  115 (222)
                      +.+|+|.|+..-  . .+..++++-+..++++|++.|+-+..|   +..+..|+
T Consensus        60 ~~~vtit~w~~~~~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~---~~~~~~kl  110 (456)
T 4g68_A           60 SKKITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTE---NDAYKTKI  110 (456)
T ss_dssp             ---CEEEEEECCCSTTHHHHHHHHHHHHHHHCTTSEEEEEECC---HHHHHHHH
T ss_pred             CCCEEEEEeeCCCCchHHHHHHHHHHHHHHHCcCeEEEEEECC---cHHHHHHH
Confidence            345666665321  2 344567777778899999999765443   44444443

>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*

Probab=85.83  E-value=0.96  Score=39.49  Aligned_cols=40  Identities=13%  Similarity=0.025  Sum_probs=27.1

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChH
Q 027523           67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLP  108 (222)
Q Consensus        67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~  108 (222)
                      ||++-. .+-.....++++.+..++++ ++.|+-+.+|-.-+
T Consensus        42 tl~~w~-~~~~~~~~~~~~~~~f~~~~-gi~V~~~~~~~~~~   81 (420)
T 4hw8_A           42 QLTMWV-DGDKQMAFYKKITDQYTKKT-GIKVKLVNIGQNDQ   81 (420)
T ss_dssp             EEEEEE-SSHHHHHHHHHHHHHHHHHH-CCEEEEEECCTTTH
T ss_pred             EEEEec-CCCcchHHHHHHHHHHHHHh-CCEEEEEecCchhH
Confidence            455533 33335667788888888899 99988877764433

>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A

Probab=85.64  E-value=0.69  Score=41.74  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=26.2

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeec
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVL  100 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G  100 (222)
                      .+|+|....  +++..++++.+..++++|+++|+-
T Consensus        43 ~~L~V~~a~--sl~~~~~~l~~~Fe~~~pgv~V~~   75 (354)
T 3k6v_A           43 EVLTVFHAG--SLSVPFEELEAEFEAQHPGVDVQR   75 (354)
T ss_dssp             CEEEEEEEG--GGHHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CcEEEEEec--chHHHHHHHHHHHHHHCCCcEEEE
Confidence            367765444  588999999999999999998753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=85.34  E-value=1.9  Score=31.15  Aligned_cols=28  Identities=14%  Similarity=0.156  Sum_probs=18.8

Q ss_pred             EEEEEECCeEeEeeeccCCCCChhHHHHHHHH
Q 027523          175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK  206 (222)
Q Consensus       175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~  206 (222)
                      .|-++-||+.+.. .. |..  .++|.+.|++
T Consensus        86 t~~~~~~G~~~~~-~~-G~~--~~~l~~~l~~  113 (114)
T 2oe3_A           86 TFVLGKDGQLIGK-II-GAN--PTALEKGIKD  113 (114)
T ss_dssp             EEEEEETTEEEEE-EE-SSC--HHHHHHHHHT
T ss_pred             EEEEEeCCeEEEE-Ee-CCC--HHHHHHHHHh
Confidence            4667779998863 33 332  7888887764

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=84.94  E-value=1.5  Score=35.40  Aligned_cols=38  Identities=3%  Similarity=0.084  Sum_probs=27.8

Q ss_pred             ccEEEEEecCCCCch-hhHHHHHHHHHHhCCCceeecccC
Q 027523           65 GSTVNINFCASCSYR-GTAITMKRMLETQFPGIDVVLANY  103 (222)
Q Consensus        65 g~tV~i~YC~sCgY~-~~f~~lk~~L~~~yP~i~V~G~nY  103 (222)
                      ..+..+-|+..||=+ ....|+.++|++. |+..+..++|
T Consensus        55 agk~DVYY~SP~GKkfRSk~Ev~ryL~~~-~~~~~~~e~F   93 (133)
T 1ub1_A           55 AGKYDVYLINPQGKAFRSKVELIAYFEKV-GDTSLDPNDF   93 (133)
T ss_dssp             CCSEEEEEECTTSCEESSHHHHHHHHTTS-CCCSCCGGGC
T ss_pred             CCceeEEEECCCCCeeeCHHHHHHHHHHC-CccCCCHhHC
Confidence            357899999999955 6789999999864 5533444444

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=84.91  E-value=9.6  Score=27.97  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523          175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL  208 (222)
Q Consensus       175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l  208 (222)
                      .+-++-||+.++. ..  +..+.++|.+.|++.+
T Consensus        97 t~~~~~~G~~~~~-~~--G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           97 TLLLFKNGEVAAT-KV--GALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEEEETTEEEEE-EE--SCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEE-Ec--CCCCHHHHHHHHHHhh
Confidence            4666679998863 22  3558899999998876

>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}

Probab=83.49  E-value=0.67  Score=41.99  Aligned_cols=39  Identities=13%  Similarity=0.029  Sum_probs=22.3

Q ss_pred             CccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCC
Q 027523           64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP  104 (222)
Q Consensus        64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYP  104 (222)
                      ...||++-.. +=.....++++.+..+ ++|++.|+-+.+|
T Consensus        18 ~~~tlt~w~~-~~~~~~~~~~~i~~F~-~~pgi~V~~~~~~   56 (477)
T 2vgq_A           18 EEGKLVIWIN-GDKGYNGLAEVGKKFE-KDTGIKVTVEHPD   56 (477)
T ss_dssp             CTTSEEEECC-TTSCHHHHHHHHHHHH-HHHSCCEEEECCT
T ss_pred             CCcEEEEEeC-CCcchHHHHHHHHHHH-hCcCCeEEEEecC
Confidence            3445655432 1123355666666666 7789888766554

>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}

Probab=81.68  E-value=1.4  Score=37.20  Aligned_cols=47  Identities=13%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             CccEEEEEecCCCCchhh---HHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523           64 YGSTVNINFCASCSYRGT---AITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV  115 (222)
Q Consensus        64 ~g~tV~i~YC~sCgY~~~---f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~  115 (222)
                      .+.+|+|-.+.  ++...   ++++.+..++++ ++.|+-+.++  ....+..|+
T Consensus        21 ~~~~L~v~~~~--~~~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~--~~~~~~~kl   70 (330)
T 2qry_A           21 MKPVLTVYTYD--SFAADWGPGPVVKKAFEADC-NCELKLVALE--DGVSLLNRL   70 (330)
T ss_dssp             -CCEEEEEECH--HHHSTTSSHHHHHHHHHTTS-CSEEEEEECS--CHHHHHHHH
T ss_pred             CCCeEEEEecc--ccccchhhhHHHHHHHHHHH-CCEEEEEeCC--CHHHHHHHH
Confidence            34577775443  34333   578888888888 9998876553  134555554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=81.25  E-value=17  Score=28.15  Aligned_cols=43  Identities=12%  Similarity=0.021  Sum_probs=32.9

Q ss_pred             CccEEEEEecCCCCchhhHHHH-HHHHHHhCC---CceeecccCCCC
Q 027523           64 YGSTVNINFCASCSYRGTAITM-KRMLETQFP---GIDVVLANYPPP  106 (222)
Q Consensus        64 ~g~tV~i~YC~sCgY~~~f~~l-k~~L~~~yP---~i~V~G~nYPpp  106 (222)
                      .-.+|.+.+=..|.|=..|... .+.|.++|+   +++++--.+|..
T Consensus        11 a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~   57 (186)
T 3bci_A           11 GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL   57 (186)
T ss_dssp             CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcC
Confidence            3458888888999988888764 578889997   577777777754

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=81.06  E-value=0.97  Score=38.91  Aligned_cols=32  Identities=3%  Similarity=-0.184  Sum_probs=22.5

Q ss_pred             cEEEEEe--cCCCCchhhHHHHHHHHHHhCCCce
Q 027523           66 STVNINF--CASCSYRGTAITMKRMLETQFPGID   97 (222)
Q Consensus        66 ~tV~i~Y--C~sCgY~~~f~~lk~~L~~~yP~i~   97 (222)
                      ..+--.|  ..-||+.+.|+++++.+...-+++.
T Consensus        35 ~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~   68 (248)
T 2c0g_A           35 YSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLL   68 (248)
T ss_dssp             EEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEE
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHhccCCCeE
Confidence            3444445  5889999999999988766346653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d2fa8a1	86	c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {A	1e-08

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212
           + G FE+  +  +++ + ++G FPG  ELK  +   +   R
Sbjct: 43  TGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPER 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2fa8a1	86	Hypothetical protein Atu0228 {Agrobacterium tumefa	99.88

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.88  E-value=1.3e-23  Score=157.76  Aligned_cols=82  Identities=23%  Similarity=0.494  Sum_probs=76.1

Q ss_pred             cEEEEEecCCCCchhhHHHHHHHHHHhCCC--ceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChh
Q 027523           66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP  143 (222)
Q Consensus        66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~--i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~  143 (222)
                      ++|+|+||..|||..++..|++.|.+.||+  .+|.+                                           
T Consensus         3 p~I~IeYC~~C~w~~Ra~wlaqeLl~tF~~~i~evsL-------------------------------------------   39 (86)
T d2fa8a1           3 PRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSL-------------------------------------------   39 (86)
T ss_dssp             CEEEEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEEE-------------------------------------------
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHHhCCccCceEEE-------------------------------------------
Confidence            689999999999999999999999999999  35643                                           


Q ss_pred             hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCC
Q 027523          144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVD  215 (222)
Q Consensus       144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~  215 (222)
                                               .++++|.|||++||++||||+++|||||.+||+|+||++++|+|+||
T Consensus        40 -------------------------~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~i~p~~~lg   86 (86)
T d2fa8a1          40 -------------------------IPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLG   86 (86)
T ss_dssp             -------------------------EEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCCCC
T ss_pred             -------------------------EECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHhhCcCCCCC
Confidence                                     25689999999999999999999999999999999999999999986