Citrus Sinensis ID: 027559

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MNLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEEcEEEEEEcccccEEEEEEEEEEEHcccccEEEEEEEEEEHHHHHHHHHHcccccEEEEEEEEEEcccccccccEEEEEEEEEEEEccHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEccccccHHHHHHHHccccHHHHcccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccEEEEEEEEEEEEEEcccccccccccccccccccccccHHcccHHHHHHHHHHHccHHHHHccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccEcccccEEEcc
Coil and Loop (DISEMBL)
MNLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCqkhlkpndfiyvtgqlhsyskvdkngklcLCYKVVVEDFNYVRECGQGLAFKKSvesksrggeagmEKYENRFYLWHVYFanpyewwdnrknklypgapdfkhkstgealwldpkdppwvkKQLQRIDSMMEergsrdlgslsrvstwvyde
Flexible Loop (DISEMBL)
mnlflktkdTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECgqglafkksvesksrggEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTgealwldpkdppWVKKQLQRIDSMmeergsrdlgslsrvstwvyde
Low Complexity Region (SEG)
MNLFLKTKDTSMFNllltllgisirlliklenielneCVTMldillliihhlqclssillAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Disordered region (IsUnstruct)
****LKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFK***************KYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKH***GEALWLD***************************************
Disordered Region (DISOPRED)
******T*DTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV***GKLCLCYKVVVED***********************************YLWHVYFANPYEWWDNRKNK*****PDFKHKSTGEALWLDPKDPPWVKKQLQ***************************
Disordered Region (DISEMBL)
MNLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKK**********AGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Disordered Region (DISPRO)
*NLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC***********************YENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEER*****GSLSRVSTW*Y**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9SX99	261	Protein OSB1, mitochondri	yes	no	0.680	0.578	0.430	1e-25
Q8GXH3	371	Protein OSB2, chloroplast	no	no	0.626	0.374	0.283	5e-09
Q8GWJ4	440	Protein OSB3, chloroplast	no	no	0.270	0.136	0.442	1e-07
Q9FYJ2	360	Protein OSB4, chloroplast	no	no	0.509	0.313	0.273	3e-05

>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 89/158 (56%), Gaps = 7/158 (4%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVREC 115
           I L +   MA+ C  HLK ND I V+G+L SYSK   D    L L Y+V V + NYV   
Sbjct: 98  ISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAP 157

Query: 116 -GQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHK 174
               L  + S   K++  +   E  ++  YLW V+F+NPY+WWDNR+NK  P  PDFKHK
Sbjct: 158 PSHVLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHK 217

Query: 175 STGEALWLDPKDPPWVKKQLQRIDSMM----EERGSRD 208
            TGEALWL    P W+ ++L+  D       EE+  RD
Sbjct: 218 DTGEALWLCSDLPDWITRRLELFDQKNRFYDEEKTRRD 255

Regulates mitochondrial DNA recombination. Represses homologous recombination, preventing mitochondrial genome instability and unbalanced transmission of alternative mtDNA configurations. Binds preferentially single-stranded DNA. Does not bind to RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           I +   GD+A+   +++  +D I+V+G+L   S            +V+V++ N+++    
Sbjct: 140 IPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSP 199

Query: 118 GLAFKKSVESKSRGGEAGMEKYENRFYL----------WHVYFANPYEWWDNRKNK---- 163
             +    V S S   E+G++K   R             W+    NP EWWD+R+NK    
Sbjct: 200 SPS-PFMVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGL 258

Query: 164 LYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRID 198
           + P  PDFK K +  +LWL+ K P WV  +L+ ++
Sbjct: 259 VKPRHPDFKSKDSSFSLWLN-KAPNWVLPKLEGLE 292

Binds preferentially single-stranded DNA. Does not bind to RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 142 RFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMM 201
           R  +W     NP +WWDNR +K  P  PDFKHK TGEALW+    P W   +L  +    
Sbjct: 376 REEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIG-DSPTWALSKLPPLKKNQ 434

Query: 202 E 202
           E
Sbjct: 435 E 435

Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 33/146 (22%)

Query: 64  GDMAQLCQKHLKPNDFIYVTGQL------------HSYSKVDKNGKLCLCYKVVVEDFNY 111
           GD+A     +LK ND +++TGQ+             ++ ++ K+      ++V+V D +Y
Sbjct: 127 GDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQVMVRDLHY 186

Query: 112 VR----------ECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRK 161
           +              Q     K   S  RG E G         LW      P EW D R+
Sbjct: 187 IEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTN-------LWFDLVDKPNEWCDYRE 239

Query: 162 NK----LYPGAPDFKHKSTGEALWLD 183
            K    + P  PDFK K   +ALWL+
Sbjct: 240 MKQNGSVNPKHPDFKKKDGSQALWLN 265

Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
356553921	271	PREDICTED: protein OSB1, mitochondrial-l	0.707	0.579	0.508	5e-37
356553917	270	PREDICTED: protein OSB1, mitochondrial-l	0.702	0.577	0.502	6e-37
302142377	273	unnamed protein product [Vitis vinifera]	0.653	0.531	0.520	4e-34
357437947	268	Protein OSB1 [Medicago truncatula] gi|35	0.698	0.578	0.475	1e-33
147795684	273	hypothetical protein VITISV_012535 [Viti	0.653	0.531	0.513	3e-33
449470037	263	PREDICTED: protein OSB1, mitochondrial-l	0.725	0.612	0.444	2e-32
125587107	296	hypothetical protein OsJ_11719 [Oryza sa	0.725	0.543	0.445	9e-32
125544849	296	hypothetical protein OsI_12598 [Oryza sa	0.725	0.543	0.445	9e-32
326527599	294	predicted protein [Hordeum vulgare subsp	0.680	0.513	0.464	1e-31
293334287	249	uncharacterized protein LOC100382744 [Ze	0.729	0.650	0.419	3e-29

>gi|356553921|ref|XP_003545299.1| PREDICTED: protein OSB1, mitochondrial-like [Glycine max]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 109/167 (65%), Gaps = 10/167 (5%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           +LL +  ++A+L  +HLK NDFI V G L S++K D NG L L YK+ V++F +V +   
Sbjct: 113 LLLMMRNNVAKLASEHLKLNDFIQVLGSLGSFTKPDANGILRLNYKLEVKEFEFVAQRSG 172

Query: 118 GLAFKK--SVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKS 175
            L  KK  SVE+     +AGM+K +NR +LW V+F+NP EWWD RK+K  P  PDFKHK 
Sbjct: 173 YLGDKKLESVEA-----DAGMQKNQNRLHLWQVFFSNPNEWWDQRKSKRNPKQPDFKHKD 227

Query: 176 TGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 222
           TGEALWL   DPPWVK+QLQ  DS +        G  SRV+ WVYDE
Sbjct: 228 TGEALWLSEYDPPWVKRQLQLFDSKI---AGGSAGRRSRVTNWVYDE 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553917|ref|XP_003545297.1| PREDICTED: protein OSB1, mitochondrial-like [Glycine max]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 107/167 (64%), Gaps = 11/167 (6%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           +LL +  ++A+L  +HLK ND I+V G L S++K D NG L L YK+ V++F +V +   
Sbjct: 113 LLLMMRNNVAKLASEHLKSNDLIHVLGSLGSFTKPDANGILRLNYKLEVKEFEFVAQSSG 172

Query: 118 GLAFKK--SVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKS 175
            L  KK  SVE      +AGM K +NR +LW V+F+NP EWWD RK+K  P  PDFKHK 
Sbjct: 173 YLGDKKLESVE------DAGMHKNQNRLHLWQVFFSNPNEWWDQRKSKRNPKQPDFKHKD 226

Query: 176 TGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 222
           TGEALWL   DPPWVK+QLQ  DS +        G  SRV+ WVYDE
Sbjct: 227 TGEALWLSEYDPPWVKRQLQLFDSKI---AGGSAGRRSRVTNWVYDE 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142377|emb|CBI19580.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           I L +   MA++  KHLK ND I+V+G L  Y+K D NG+L   +KV+V++ NYV + GQ
Sbjct: 112 IFLQMWDRMAEISFKHLKQNDLIHVSGHLGFYTKADDNGQLRPYHKVIVKELNYVTQFGQ 171

Query: 118 GLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTG 177
              +KK    +S GG  G+ K ++R YLW V+F NP EWWDNRK K  P  PDF+HK TG
Sbjct: 172 PPTYKKIENLESEGG-TGLIKPKSRLYLWQVFFYNPDEWWDNRKRKKKPSQPDFEHKHTG 230

Query: 178 EALWLDPKDPPWVKKQLQRIDSMMEE 203
           EALWL   DP WV+KQLQ  DS M E
Sbjct: 231 EALWLHKGDPVWVRKQLQLHDSRMAE 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437947|ref|XP_003589249.1| Protein OSB1 [Medicago truncatula] gi|355478297|gb|AES59500.1| Protein OSB1 [Medicago truncatula]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 11/166 (6%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           +LL +  ++A++  +HLKPND I V+G L S+     +G   L YK++V++ N+V    +
Sbjct: 113 VLLMMWNNVAEIAYEHLKPNDLICVSGYLDSF-----DGNSDLGYKLMVKELNFV---AR 164

Query: 118 GLAFK-KSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKST 176
            L ++    E K  G +AG + Y N  +LW V+FANP EWWD RKNKL P  PDFKHK T
Sbjct: 165 SLGYEDHEKEHKFEGAKAGNQNYGNPLHLWQVFFANPNEWWDQRKNKLNPKQPDFKHKDT 224

Query: 177 GEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE 222
           GEALWL   +PPWV KQL+ +DS   E G    G  SRV++WVYDE
Sbjct: 225 GEALWLSKHNPPWVTKQLKLLDSKFSEGGF--AGCRSRVTSWVYDE 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795684|emb|CAN72175.1| hypothetical protein VITISV_012535 [Vitis vinifera]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 95/146 (65%), Gaps = 1/146 (0%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           I L +   MA++  KHLK ND I+V+G L  Y+K D NG+L   +KV+V++ NYV + GQ
Sbjct: 112 IFLQMWDRMAEISFKHLKQNDLIHVSGHLGFYTKADDNGQLRPYHKVIVKELNYVTQFGQ 171

Query: 118 GLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTG 177
              +KK    +S GG  G+ K ++R  LW V+F NP EWWDNRK K  P  PDF+HK TG
Sbjct: 172 PPTYKKIENLESEGG-TGLIKPKSRLXLWQVFFYNPDEWWDNRKRKKKPSQPDFEHKHTG 230

Query: 178 EALWLDPKDPPWVKKQLQRIDSMMEE 203
           EALWL   DP WV+KQLQ  DS M E
Sbjct: 231 EALWLHKGDPVWVRKQLQLHDSRMAE 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470037|ref|XP_004152725.1| PREDICTED: protein OSB1, mitochondrial-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           I L +  +MA+   + LKPND++ V G L SY KV K+GK  L Y++ V + N +    Q
Sbjct: 100 IFLKLEKEMAESWIERLKPNDYVNVAGPLESYKKVGKSGKSYLSYQLTVSELNCIAHNDQ 159

Query: 118 GLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTG 177
           G   + SV      G      Y  R YLW V+F++P+EWWDNR  K  P  PDF HKSTG
Sbjct: 160 GSKSQNSVGMLHEEGHDCRSSYRERLYLWQVFFSSPHEWWDNRNKKSNPNGPDFSHKSTG 219

Query: 178 EALWLDPKDPPWVKKQLQRIDSMMEER-GSRDLGSLSRVSTW 218
           EALWL   DPPW++KQL+ +D+ M+++ G   L S S +S W
Sbjct: 220 EALWLRSTDPPWIRKQLELLDTQMKKKDGDGHLVSDSSMSNW 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125587107|gb|EAZ27771.1| hypothetical protein OsJ_11719 [Oryza sativa Japonica Group]

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 5/166 (3%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           + L + G++A +  KHLK ND +YV+G L+SY KVD +G+    YK+ V D NYV +  Q
Sbjct: 104 VTLNLQGELAHVSLKHLKQNDLVYVSGLLNSYHKVDPSGEKHTFYKIHVTDLNYVLDQNQ 163

Query: 118 GLAFKKSVESKSRGGEAGME-----KYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFK 172
                ++   KS       E     KY +R  LW V+FA+PYEWWDNR++K Y   PDFK
Sbjct: 164 RPQNDENSSDKSSMLSTTDEILTEKKYIDRLRLWQVFFASPYEWWDNRQSKPYSYYPDFK 223

Query: 173 HKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTW 218
           HK TGE LWL   DPPWV++QL+  D  + E G RD     +  TW
Sbjct: 224 HKDTGEKLWLRADDPPWVRRQLELQDQQLAENGHRDGSRTLKNHTW 269

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125544849|gb|EAY90988.1| hypothetical protein OsI_12598 [Oryza sativa Indica Group]

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 5/166 (3%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           + L + G++A +  KHLK ND +YV+G L+SY KVD +G+    YK+ V D NYV +  Q
Sbjct: 104 VTLNLQGELAHVSLKHLKQNDLVYVSGLLNSYHKVDPSGEKHTFYKIHVTDLNYVLDQNQ 163

Query: 118 GLAFKKSVESKSRGGEAGME-----KYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFK 172
                ++   KS       E     KY +R  LW V+FA+PYEWWDNR++K Y   PDFK
Sbjct: 164 RPQNDENSSDKSSMLSTTDEILTEKKYIDRLRLWQVFFASPYEWWDNRQSKPYSYYPDFK 223

Query: 173 HKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTW 218
           HK TGE LWL   DPPWV++QL+  D  + E G RD     +  TW
Sbjct: 224 HKDTGEKLWLRADDPPWVRRQLELQDQQLAENGHRDGSRTLKNHTW 269

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326527599|dbj|BAK08074.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 4/155 (2%)

Query: 58  ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
           + L + GD+A +C KHLK  D ++V+G L+SY KV + G+L + YK+ V++ NYV +  +
Sbjct: 106 VTLQMKGDLANVCLKHLKYKDLVHVSGFLNSYHKVSETGELYVYYKIHVKELNYVYDPKK 165

Query: 118 GLAFKKSVESKSRGGEAGME----KYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKH 173
                 SV+  S            K   R  LW V+FA+PYEWWDNR+ K Y G PDFKH
Sbjct: 166 ARNDNDSVDPASTPSADTQTLEETKCRERLRLWQVFFASPYEWWDNRQYKPYAGCPDFKH 225

Query: 174 KSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRD 208
           K T E LWL P DPPWV KQL+ ID    E G RD
Sbjct: 226 KDTREQLWLHPDDPPWVIKQLKLIDQQTAESGRRD 260

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293334287|ref|NP_001168932.1| uncharacterized protein LOC100382744 [Zea mays] gi|223973799|gb|ACN31087.1| unknown [Zea mays]

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 57  SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECG 116
           ++ L + G++A +  KHLK +D +YV+G L SY KV  +G+  + YK+ V + NYV +  
Sbjct: 64  NVTLQLTGELANVGLKHLKHDDLVYVSGHLGSYHKVSPSGERHIVYKIYVRELNYVVDQN 123

Query: 117 ---QGLAFKKSVESKSRGGEAGMEKYE--NRFYLWHVYFANPYEWWDNRKNKLYPGAPDF 171
              Q  A   S  S +      +++ E   R  LW V+FANPYEWWDNR++K +   PDF
Sbjct: 124 KKPQNDADSTSPPSMTSVTPQMLKENECIGRLRLWQVFFANPYEWWDNRQSKTWANYPDF 183

Query: 172 KHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTW 218
           KHK T E +WL P DPPWV+KQL+  D  + E G R    LS+   W
Sbjct: 184 KHKDTREKIWLRPDDPPWVRKQLELYDLEVAENGHRCKSRLSKKQNW 230

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2015353	261	OSB1 "Organellar Single-strand	0.644	0.547	0.44	5.2e-26
TAIR|locus:2119767	371	PTAC9 "plastid transcriptional	0.689	0.412	0.272	4.7e-10
TAIR|locus:505006672	442	OSB3 "organellar single-strand	0.301	0.151	0.426	1.1e-09
TAIR|locus:2015721	360	OSB4 "organellar single-strand	0.216	0.133	0.489	1.1e-07

TAIR|locus:2015353 OSB1 "Organellar Single-stranded" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 66/150 (44%), Positives = 86/150 (57%)

Query:    66 MAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVREC-GQGLAFK 122
             MA+ C  HLK ND I V+G+L SYSK   D    L L Y+V V + NYV       L  +
Sbjct:   106 MARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHVLDSQ 165

Query:   123 KSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWL 182
              S   K++  +   E  ++  YLW V+F+NPY+WWDNR+NK  P  PDFKHK TGEALWL
Sbjct:   166 ISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWL 225

Query:   183 DPKDPPWVKKQLQRIDSMM----EERGSRD 208
                 P W+ ++L+  D       EE+  RD
Sbjct:   226 CSDLPDWITRRLELFDQKNRFYDEEKTRRD 255

GO:0003697 "single-stranded DNA binding" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0000002 "mitochondrial genome maintenance" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119767 PTAC9 "plastid transcriptionally active 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 46/169 (27%), Positives = 81/169 (47%)

Query:    64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKK 123
             GD+A+   +++  +D I+V+G+L   S            +V+V++ N+++      +   
Sbjct:   146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPS-PF 204

Query:   124 SVESKSRGGEAGMEKYENRFYL----------WHVYFANPYEWWDNRKNKLY----PGAP 169
              V S S   E+G++K   R             W+    NP EWWD+R+NK+     P  P
Sbjct:   205 MVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHP 264

Query:   170 DFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTW 218
             DFK K +  +LWL+ K P WV  +L+ ++  +    +R +  L    +W
Sbjct:   265 DFKSKDSSFSLWLN-KAPNWVLPKLEGLEFDVLVPKARVVKQLKGEESW 312

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

TAIR|locus:505006672 OSB3 "organellar single-stranded DNA binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/68 (42%), Positives = 35/68 (51%)

Query:   135 GMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 194
             G  K   R  +W     NP +WWDNR +K  P  PDFKHK TGEALW+    P W   +L
Sbjct:   371 GNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGDS-PTWALSKL 429

Query:   195 QRIDSMME 202
               +    E
Sbjct:   430 PPLKKNQE 437

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2015721 OSB4 "organellar single-stranded DNA binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query:   146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 194
             W     N  +WWDNR +K  P +PDFKHK TG  LWL    P WV ++L
Sbjct:   296 WKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSDS-PSWVLEKL 343


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       180   0.00092  109 3  11 22  0.43    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  195 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.14u 0.15s 16.29t   Elapsed:  00:00:01
  Total cpu time:  16.15u 0.15s 16.30t   Elapsed:  00:00:01
  Start:  Tue May 21 00:30:12 2013   End:  Tue May 21 00:30:13 2013

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
cd04496	100	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds	7e-04

>gnl|CDD|239942 cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGK 97
          G +A+   K+LK  D +YV G+L + S  DK+G+
Sbjct: 52 GKLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQ 85

SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PRK07459	121	single-stranded DNA-binding protein; Provisional	99.86
PRK06752	112	single-stranded DNA-binding protein; Validated	99.85
PRK07275	162	single-stranded DNA-binding protein; Provisional	99.85
PRK08486	182	single-stranded DNA-binding protein; Provisional	99.82
PRK06751	173	single-stranded DNA-binding protein; Provisional	99.81
PRK08763	164	single-stranded DNA-binding protein; Provisional	99.81
PRK07274	131	single-stranded DNA-binding protein; Provisional	99.81
PRK06642	152	single-stranded DNA-binding protein; Provisional	99.8
PRK09010	177	single-stranded DNA-binding protein; Provisional	99.79
PRK06293	161	single-stranded DNA-binding protein; Provisional	99.78
PRK08182	148	single-stranded DNA-binding protein; Provisional	99.78
PRK06958	182	single-stranded DNA-binding protein; Provisional	99.78
PRK06863	168	single-stranded DNA-binding protein; Provisional	99.78
PF00436	104	SSB: Single-strand binding protein family; InterPr	99.77
PRK13732	175	single-stranded DNA-binding protein; Provisional	99.77
TIGR00621	164	ssb single stranded DNA-binding protein (ssb). Thi	99.75
PRK05853	161	hypothetical protein; Validated	99.72
PRK05733	172	single-stranded DNA-binding protein; Provisional	99.72
PRK06341	166	single-stranded DNA-binding protein; Provisional	99.72
PRK05813	219	single-stranded DNA-binding protein; Provisional	99.71
PRK07772	186	single-stranded DNA-binding protein; Provisional	99.69
cd04496	100	SSB_OBF SSB_OBF: A subfamily of OB folds similar t	99.68
COG0629	167	Ssb Single-stranded DNA-binding protein [DNA repli	99.67
PRK02801	101	primosomal replication protein N; Provisional	99.63
PRK05813	219	single-stranded DNA-binding protein; Provisional	99.49
KOG1653	175	consensus Single-stranded DNA-binding protein [Rep	98.85
PF01336	75	tRNA_anti-codon: OB-fold nucleic acid binding doma	96.71
cd04487	73	RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f	95.82
cd04489	78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	95.36
cd03524	75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	95.1
cd04482	91	RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara	93.72
PF13742	99	tRNA_anti_2: OB-fold nucleic acid binding domain	93.03
cd04492	83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	92.24
PRK00036	107	primosomal replication protein N; Reviewed	91.74
COG3390	196	Uncharacterized protein conserved in archaea [Func	91.27
cd04475	101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	87.53
COG2965	103	PriB Primosomal replication protein N [DNA replica	86.69
PRK00286	438	xseA exodeoxyribonuclease VII large subunit; Revie	86.47
cd04485	84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	86.28
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	86.04
cd04474	104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	85.45
cd04490	79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	85.43
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	80.9
PF11506	104	DUF3217: Protein of unknown function (DUF3217); In	80.2
cd04491	82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	80.08

>PRK07459 single-stranded DNA-binding protein; Provisional

Probab=99.86  E-value=2.5e-21  Score=155.01  Aligned_cols=89  Identities=18%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             eeeeeeccceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCC-CceEEEEEEEEe
Q 027559           29 KLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKN-GKLCLCYKVVVE  107 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkd-Gq~rs~~eVvV~  107 (222)
                      .+++.+.+.+++.|+||++++...++++||+|++||++||.+++||+||++|+|+|+|++++|+|++ |++++.++|+|+
T Consensus        17 elr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~   96 (121)
T PRK07459         17 EVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVD   96 (121)
T ss_pred             EEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHHHHHHHcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEe
Confidence            3577888999999999999876667899999999999999999999999999999999999999997 999999999999


Q ss_pred             eEEeeecCCC
Q 027559          108 DFNYVRECGQ  117 (222)
Q Consensus       108 el~Fv~~k~~  117 (222)
                      +|+||+++++
T Consensus        97 ~i~~L~~k~~  106 (121)
T PRK07459         97 RLELLGSKRD  106 (121)
T ss_pred             EEEECcCCCc
Confidence            9999987643

>PRK06752 single-stranded DNA-binding protein; Validated

Probab=99.85  E-value=1.2e-20  Score=148.22  Aligned_cols=87  Identities=16%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             eeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEE
Q 027559           30 LENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVV  105 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVv  105 (222)
                      +++.+.+.+++.|+||++++.    ....++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.++|+
T Consensus        17 lr~t~~G~~~~~f~lAv~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~   96 (112)
T PRK06752         17 LYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVV   96 (112)
T ss_pred             EEECCCCCEEEEEEEEECCCeEcCCCCEEEEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEE
Confidence            577889999999999998753    2347999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEeeecCC
Q 027559          106 VEDFNYVRECG  116 (222)
Q Consensus       106 V~el~Fv~~k~  116 (222)
                      |++|+|++++.
T Consensus        97 a~~i~~l~~~~  107 (112)
T PRK06752         97 IESITFLERRR  107 (112)
T ss_pred             EEEEEECCCCC
Confidence            99999998764

>PRK07275 single-stranded DNA-binding protein; Provisional

Probab=99.85  E-value=9.3e-21  Score=159.10  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             eeeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      .+++.+.+.+++.|+|||+++.    ....++||+|++||++||.+++||+||++|+|+|+|++++|++++|++++.++|
T Consensus        16 Elr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~ev   95 (162)
T PRK07275         16 ELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEV   95 (162)
T ss_pred             eEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHHHHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEE
Confidence            4678889999999999998753    335799999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEeeecCC
Q 027559          105 VVEDFNYVRECG  116 (222)
Q Consensus       105 vV~el~Fv~~k~  116 (222)
                      +|++|+||+++.
T Consensus        96 va~~i~~l~~~~  107 (162)
T PRK07275         96 VADNFQMLESRA  107 (162)
T ss_pred             EEeEEEECCCCC
Confidence            999999999875

>PRK08486 single-stranded DNA-binding protein; Provisional

Probab=99.82  E-value=9e-20  Score=155.72  Aligned_cols=89  Identities=13%  Similarity=0.155  Sum_probs=81.1

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+..++.|+||+.++.      ..++++||+|++||++||.|++||+||++|+|+|||++++|+|++|++++.+
T Consensus        16 Elr~t~sG~~va~fslAv~r~~~~~~Ge~~e~t~fi~v~~fg~~AE~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~   95 (182)
T PRK08486         16 ELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKH   95 (182)
T ss_pred             EEEECCCCCEEEEEEEEEecceecCCCCCcccceEEEEEEEhHHHHHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEE
Confidence            4678888999999999998753      1347999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCC
Q 027559          103 KVVVEDFNYVRECGQ  117 (222)
Q Consensus       103 eVvV~el~Fv~~k~~  117 (222)
                      +|+|++|+||.++..
T Consensus        96 eI~a~~v~~L~~~~~  110 (182)
T PRK08486         96 TITAESMQMLDSKSD  110 (182)
T ss_pred             EEEEeEEEECCCCCC
Confidence            999999999987654

>PRK06751 single-stranded DNA-binding protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=153.19  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=81.6

Q ss_pred             eeeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      .+++.+.+.+++.|+||+.++.    ....++||+|++||++||.+++||+||++|+|+|+|++++|++++|++++.++|
T Consensus        16 elR~t~sG~~v~~fslAvnr~~~~~~ge~~tdwi~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eV   95 (173)
T PRK06751         16 DLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEV   95 (173)
T ss_pred             cEEECCCCCEEEEEEEEEccceecCCCCEEEEEEEEEEeCcHHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEE
Confidence            4678888999999999998742    345789999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEeeecCCCC
Q 027559          105 VVEDFNYVRECGQG  118 (222)
Q Consensus       105 vV~el~Fv~~k~~~  118 (222)
                      +|++|+|+++++..
T Consensus        96 va~~i~~l~~r~~~  109 (173)
T PRK06751         96 LAESVQFLEPRNGG  109 (173)
T ss_pred             EEEEEEeCcCCCCC
Confidence            99999999977543

>PRK08763 single-stranded DNA-binding protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=151.17  Aligned_cols=89  Identities=9%  Similarity=0.187  Sum_probs=80.5

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+.+++.|+||+++..      ..+.++||+|++||++||.|++||+||++|+|+|+|++++|++++|++++.+
T Consensus        19 elr~t~~G~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~Ae~v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~   98 (164)
T PRK08763         19 DIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVT   98 (164)
T ss_pred             eEEEcCCCCeEEEEEEEeccceecCCCCeeccceEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeceeECCCCCEEEEE
Confidence            4578888999999999998642      1346899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCC
Q 027559          103 KVVVEDFNYVRECGQ  117 (222)
Q Consensus       103 eVvV~el~Fv~~k~~  117 (222)
                      +|+|++|+||+++..
T Consensus        99 eIva~~i~~L~~~~~  113 (164)
T PRK08763         99 EIVADEMQMLGGRGE  113 (164)
T ss_pred             EEEEeEEEECCCCCC
Confidence            999999999998754

>PRK07274 single-stranded DNA-binding protein; Provisional

Probab=99.81  E-value=3.2e-19  Score=144.19  Aligned_cols=90  Identities=14%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             eeeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      .+++.+.+..++.|+||++++.    ....++||+|++||++||.+++||+||++|+|+|+|++++| +++|++++.++|
T Consensus        16 elr~t~~g~~~~~fslAv~~~~k~~~g~~~t~w~~v~~fg~~Ae~v~~~l~KG~~V~V~Grl~~~~y-~kdG~~~~~~ev   94 (131)
T PRK07274         16 ELVKTANDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTRKY-EKDGQTHYVTEV   94 (131)
T ss_pred             eEEECCCCCEEEEEEEEEcCceecCCCCEEEEEEEEEEehHHHHHHHHHcCCCCEEEEEEEEEeccC-ccCCcEEEEEEE
Confidence            3567788899999999998743    23468999999999999999999999999999999999999 899999999999


Q ss_pred             EEeeEEeeecCCCCc
Q 027559          105 VVEDFNYVRECGQGL  119 (222)
Q Consensus       105 vV~el~Fv~~k~~~~  119 (222)
                      +|++|+|++++.+..
T Consensus        95 iv~~i~~l~~k~~~~  109 (131)
T PRK07274         95 LCQSFQLLESRAQRA  109 (131)
T ss_pred             EEEEEEECcCCCccc
Confidence            999999999775443

>PRK06642 single-stranded DNA-binding protein; Provisional

Probab=99.80  E-value=4.5e-19  Score=147.20  Aligned_cols=90  Identities=10%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             eeeeeeccceEEeeeeecccee-------eceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++++.+.+++.|+||++++.       ..+.++||+|++||+ +|+.|++||+||++|+|+|+|++++|+|++|++++
T Consensus        19 Elr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~   98 (152)
T PRK06642         19 EIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDNSGQEKY   98 (152)
T ss_pred             eEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChHHHHHHHHhCCCCCEEEEEEEEEeCeeECCCCCEEE
Confidence            4578888999999999998742       124799999999996 99999999999999999999999999999999999


Q ss_pred             EEEEEEeeE----EeeecCCCC
Q 027559          101 CYKVVVEDF----NYVRECGQG  118 (222)
Q Consensus       101 ~~eVvV~el----~Fv~~k~~~  118 (222)
                      .++|+|++|    .|++++...
T Consensus        99 ~~eVvv~~~~~~i~fl~~k~~~  120 (152)
T PRK06642         99 TTEVVLQNFNSQLILLDSKNSN  120 (152)
T ss_pred             EEEEEEEecccceEeccCCCCc
Confidence            999999987    899876543

>PRK09010 single-stranded DNA-binding protein; Provisional

Probab=99.79  E-value=8.6e-19  Score=149.26  Aligned_cols=89  Identities=15%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             eeeeeeccceEEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .++++..+.++++|+||+++..       ..+.++||+|++|+++||.+++||+||++|+|+|+|++++|+|++|++++.
T Consensus        20 elR~t~nG~~v~~fsVAvn~~~kd~~~Ge~~e~t~w~~V~~fgk~Ae~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~   99 (177)
T PRK09010         20 EVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT   99 (177)
T ss_pred             eEEEcCCCCEEEEEEEEEcCccccCcccccccceEEEEEEEehhHHHHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEE
Confidence            4678888899999999998642       235799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEe---eEEeeecCCC
Q 027559          102 YKVVVE---DFNYVRECGQ  117 (222)
Q Consensus       102 ~eVvV~---el~Fv~~k~~  117 (222)
                      ++|+|+   +++||+++.+
T Consensus       100 ~eVvv~~~~~~~~l~~r~~  118 (177)
T PRK09010        100 TEVVVNVGGTMQMLGGRQG  118 (177)
T ss_pred             EEEEEecCCcEEEccCCCC
Confidence            999998   8999997744

>PRK06293 single-stranded DNA-binding protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=146.54  Aligned_cols=87  Identities=16%  Similarity=0.053  Sum_probs=79.4

Q ss_pred             eeeeeeccceEEeeeeecccee-eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEe
Q 027559           29 KLENIELNECVTMLDILLLIIH-HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVE  107 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~  107 (222)
                      .+++.+.+..++.|+||++++. ...+++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.++|+|+
T Consensus        15 ElR~t~sG~~v~~FsLAvn~~~~~~~~T~wi~v~awg~~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~   94 (161)
T PRK06293         15 EERMTSKGKRVVVLRLGVKSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVD   94 (161)
T ss_pred             eEEEcCCCCEEEEEEEEEeCCCCCccceEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEe
Confidence            3567788999999999998754 345799999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeecC
Q 027559          108 DFNYVREC  115 (222)
Q Consensus       108 el~Fv~~k  115 (222)
                      +|.|+...
T Consensus        95 ~I~fl~~~  102 (161)
T PRK06293         95 TIKFSPFG  102 (161)
T ss_pred             EEEECcCC
Confidence            99999654

>PRK08182 single-stranded DNA-binding protein; Provisional

Probab=99.78  E-value=2e-18  Score=142.82  Aligned_cols=90  Identities=8%  Similarity=-0.037  Sum_probs=78.2

Q ss_pred             eeeeeeccce----EEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCc
Q 027559           29 KLENIELNEC----VTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGK   97 (222)
Q Consensus        29 ~~~~~~~~e~----vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq   97 (222)
                      -+++++.+.+    ++.|++|++++.       ....++||+|++||++||.+++||+||++|+|+|+|++++|+|+||+
T Consensus        16 Elr~t~~G~~~~~~va~fslA~~r~~~~~~Ge~~~~~t~w~~V~~wg~~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~   95 (148)
T PRK08182         16 EYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDN   95 (148)
T ss_pred             eEEECCCCCeeeeeEEEEEEEecCceECCCCCEEecCcEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEecccCCCCCC
Confidence            3567777765    999999987642       12357899999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeeEEeeecCCCC
Q 027559           98 LCLCYKVVVEDFNYVRECGQG  118 (222)
Q Consensus        98 ~rs~~eVvV~el~Fv~~k~~~  118 (222)
                      +++.++|+|++|.|+.++...
T Consensus        96 ~r~~~eI~a~~i~~l~~r~~~  116 (148)
T PRK08182         96 ERVTFKVEARRVGILPYRIES  116 (148)
T ss_pred             EEEEEEEEEeEEEEcCCcccc
Confidence            999999999999999876543

>PRK06958 single-stranded DNA-binding protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=148.45  Aligned_cols=91  Identities=12%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++.+.+..++.|+||++++..       .+.++||+|++|+++||.+++||+||++|+|+|+|+++.|+|++|++++.
T Consensus        18 Elr~t~nG~~va~fsVAv~~~~kdk~sGe~~e~T~w~~V~~fGk~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~   97 (182)
T PRK06958         18 EVRYLPSGDAVANIRLATTDRYKDKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYS   97 (182)
T ss_pred             eEEEcCCCCEEEEEEEEeccccccccCCcccccceEEEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEE
Confidence            35677888899999999987421       23689999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeEEeeecCCCCc
Q 027559          102 YKVVVEDFNYVRECGQGL  119 (222)
Q Consensus       102 ~eVvV~el~Fv~~k~~~~  119 (222)
                      ++|+|++|+||.++.+..
T Consensus        98 ~eVvA~~V~fL~sr~~~~  115 (182)
T PRK06958         98 TEIVADQMQMLGGRGGSG  115 (182)
T ss_pred             EEEEEeEEEECCCCccCc
Confidence            999999999999775433

>PRK06863 single-stranded DNA-binding protein; Provisional

Probab=99.78  E-value=2.2e-18  Score=145.72  Aligned_cols=90  Identities=13%  Similarity=0.121  Sum_probs=80.7

Q ss_pred             eeeeeccceEEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           30 LENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      ++++..+..++.|+||+++..       ..+.++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.+
T Consensus        19 lR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~   98 (168)
T PRK06863         19 IRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTT   98 (168)
T ss_pred             EEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEE
Confidence            577888899999999998631       1235899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCCCc
Q 027559          103 KVVVEDFNYVRECGQGL  119 (222)
Q Consensus       103 eVvV~el~Fv~~k~~~~  119 (222)
                      +|+|++|+||+++...+
T Consensus        99 eI~a~~i~~L~~r~~~~  115 (168)
T PRK06863         99 EIQGDVLQMLGGRNQRN  115 (168)
T ss_pred             EEEEeEEEECCCCCccc
Confidence            99999999999876543

>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids

Probab=99.77  E-value=3.5e-18  Score=128.82  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             eeeeeeccceEEeeeeeccc------eeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLI------IHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~------r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+..++.|++++.+      ......++||+|++||++|+.+++||+|||+|+|+|+|.++.|++++|++++.+
T Consensus        15 ~~~~~~~g~~~~~f~la~~~~~~~~~~~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~   94 (104)
T PF00436_consen   15 ELRYTKNGTPVARFSLAVNRRFKDDGGEGDEKTDWINVVAWGKLAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRV   94 (104)
T ss_dssp             EEEEETTSEEEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEEEEEecEEeeeeccCccceEEEEEEeeeecccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEE
Confidence            46788888999999999988      346789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEee
Q 027559          103 KVVVEDFNYV  112 (222)
Q Consensus       103 eVvV~el~Fv  112 (222)
                      +|+|++|+||
T Consensus        95 ~i~a~~i~fl  104 (104)
T PF00436_consen   95 EIIADNIEFL  104 (104)
T ss_dssp             EEEEEEEEE-
T ss_pred             EEEEEEEEeC
Confidence            9999999996

It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....

>PRK13732 single-stranded DNA-binding protein; Provisional

Probab=99.77  E-value=3.5e-18  Score=145.30  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             eeeeeeccceEEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++++.+..++.|+||++++.       ..+.++||+|++||++||.|++||+||++|+|+|+|++++|++ +|++++.
T Consensus        20 ElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~Ae~v~~~L~KG~~V~VeGrL~~r~ye~-dG~kr~~   98 (175)
T PRK13732         20 EVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWED-NGITRYV   98 (175)
T ss_pred             EEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHHHHHHHhcCCCCEEEEEEEEEeeeEcc-CCeEEEE
Confidence            5678888899999999998642       1246999999999999999999999999999999999999986 7999999


Q ss_pred             EEEEEe---eEEeeecCCCCc
Q 027559          102 YKVVVE---DFNYVRECGQGL  119 (222)
Q Consensus       102 ~eVvV~---el~Fv~~k~~~~  119 (222)
                      ++|+|+   +|.||+++....
T Consensus        99 ~eIiv~~~g~~~fL~~~~~~~  119 (175)
T PRK13732         99 TEILVKTTGTMQMLGRAPQQN  119 (175)
T ss_pred             EEEEEeecCeEEEecCCCCCC
Confidence            999999   999999876443

>TIGR00621 ssb single stranded DNA-binding protein (ssb)

Probab=99.75  E-value=1.2e-17  Score=139.54  Aligned_cols=88  Identities=16%  Similarity=0.205  Sum_probs=79.2

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++...+..++.|+||++++.      ..+.++||+|++||++||.+++||+||++|+|+|+|++++|++++|++++.+
T Consensus        18 e~r~t~~G~~v~~fsvA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~   97 (164)
T TIGR00621        18 ELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKT   97 (164)
T ss_pred             EEEECCCCCEEEEEEEEEcCceecCCCCEeccceEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEE
Confidence            3577788889999999998642      2346899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCC
Q 027559          103 KVVVEDFNYVRECG  116 (222)
Q Consensus       103 eVvV~el~Fv~~k~  116 (222)
                      +|+|++|.||..+.
T Consensus        98 ev~a~~i~~L~~~~  111 (164)
T TIGR00621        98 EIIADNVQLLDLLG  111 (164)
T ss_pred             EEEEEEEeeccccC
Confidence            99999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05853 hypothetical protein; Validated

Probab=99.72  E-value=3e-17  Score=138.09  Aligned_cols=79  Identities=10%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             eeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           30 LENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      ++++. +.++++|+||++++..       ...++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.+
T Consensus        11 lr~~~-g~~va~F~lAvn~r~~~~~Ge~~d~~T~wi~V~~wg~lAe~v~~~L~KG~~V~V~GrL~~~~wedkdG~~r~~~   89 (161)
T PRK05853         11 RRKVG-DQEVIKFRVASNSRRRTADGGWEPGNSLFITVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEYEDRDGNRRSSL   89 (161)
T ss_pred             EEEEC-CceEEEEEEEECCCeECCCCCEeccCccEEEEEEEhHHHHHHHHHcCCCCEEEEEEEEEccceECCCCCEEEEE
Confidence            45554 5789999999987532       235899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeE
Q 027559          103 KVVVEDF  109 (222)
Q Consensus       103 eVvV~el  109 (222)
                      +|+|++|
T Consensus        90 eV~a~~V   96 (161)
T PRK05853         90 EMRATSV   96 (161)
T ss_pred             EEEEEEe
Confidence            9999976

>PRK05733 single-stranded DNA-binding protein; Provisional

Probab=99.72  E-value=3.7e-17  Score=138.70  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=78.6

Q ss_pred             eeeeeeccceEEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .++++..+..++.|+||+++..       ..+.++||+|++||++||.+++||+||++|+|+|+|++++|+ ++|+.++.
T Consensus        19 Elr~t~nG~~va~fsVAv~~~~k~~~~Ge~~e~T~w~~Vv~fgk~Ae~v~~~l~KGs~V~VeGrLr~~~y~-kdG~~r~~   97 (172)
T PRK05733         19 EVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTREWE-KDGIKRYT   97 (172)
T ss_pred             EEEECCCCCEEEEEEEEEcCccccCCCCcccccceEEEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCcEe-cCCEEEEE
Confidence            4678888889999999997632       124699999999999999999999999999999999999999 89999999


Q ss_pred             EEEEEe---eEEeeecCCC
Q 027559          102 YKVVVE---DFNYVRECGQ  117 (222)
Q Consensus       102 ~eVvV~---el~Fv~~k~~  117 (222)
                      ++|+|+   +|.||+++.+
T Consensus        98 ~eVvvd~~g~v~~L~~~~~  116 (172)
T PRK05733         98 TEIVVDMQGTMQLLGGRPQ  116 (172)
T ss_pred             EEEEEeecCeEEECcCCCC
Confidence            999999   8999987654

>PRK06341 single-stranded DNA-binding protein; Provisional

Probab=99.72  E-value=5.6e-17  Score=137.01  Aligned_cols=88  Identities=15%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             eeeeeeccceEEeeeeeccce-------eeceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLII-------HHLQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r-------~~~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++.+.+..++.|+||++++       +..++++||+|++|++ +|+.+++||+||++|+|+|+|++++|+|++|++++
T Consensus        19 ElR~t~sG~~v~~fsVAvn~~~kd~~~Ge~~e~T~w~~Vv~fg~~~Ae~~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~   98 (166)
T PRK06341         19 EIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYIEGQLQTRKWTDQSGVERY   98 (166)
T ss_pred             EEEEcCCCCEEEEEEEEEccceecCCCCcccccceEEEEEEeChHHHHHHHHhcCCCCEEEEEEEEEeCcEECCCCCEEE
Confidence            457888889999999999853       1235799999999996 99999999999999999999999999999999999


Q ss_pred             EEEEEEee----EEeeecCC
Q 027559          101 CYKVVVED----FNYVRECG  116 (222)
Q Consensus       101 ~~eVvV~e----l~Fv~~k~  116 (222)
                      .++|+|++    +.|++++.
T Consensus        99 ~~eIiv~~~~~~l~~l~~~~  118 (166)
T PRK06341         99 STEVVLQGFNSTLTMLDGRG  118 (166)
T ss_pred             EEEEEEEecccceEEcccCC
Confidence            99999986    58998764

>PRK05813 single-stranded DNA-binding protein; Provisional

Probab=99.71  E-value=6.2e-17  Score=141.91  Aligned_cols=86  Identities=17%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             eeeeeeccceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCC----ceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNG----KLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdG----q~rs~~eV  104 (222)
                      .+++.+.+.+++.|+||++++..  .++||+|++||++||.|+ +|+|||+|+|+|+|++++|++++|    ++|+.++|
T Consensus       123 elR~t~~G~~va~f~lAvnr~~~--~td~i~~v~wg~~Ae~~~-~l~KG~~V~V~GrL~sr~y~~k~g~~~g~kr~~~eV  199 (219)
T PRK05813        123 VYRTTPFGREIADLLLAVNRPYN--KSDYIPCIAWGRNARFCK-TLEVGDNIRVWGRVQSREYQKKLSEGEVVTKVAYEV  199 (219)
T ss_pred             eEEECCCCCEEEEEEEEEcCCCC--CceEEEEEEEhHHhHHHh-hCCCCCEEEEEEEEEecceEcCCCCccceEEEEEEE
Confidence            35788899999999999987654  589999999999999986 699999999999999999998874    89999999


Q ss_pred             EEeeEEeeecCCC
Q 027559          105 VVEDFNYVRECGQ  117 (222)
Q Consensus       105 vV~el~Fv~~k~~  117 (222)
                      .|++|+|++++..
T Consensus       200 ~v~~i~~l~~~~~  212 (219)
T PRK05813        200 SISKMEKVEKEEA  212 (219)
T ss_pred             EEEEEEEcCChhh
Confidence            9999999987543

>PRK07772 single-stranded DNA-binding protein; Provisional

Probab=99.69  E-value=1.3e-16  Score=136.99  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=72.2

Q ss_pred             eeeeeeccceEEeeeeecccee--------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIH--------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~--------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .++++..+.++++|.||++++.        .+.+++||+|++|+++||.+++||+|||+|+|+|||++++|+|++|++|+
T Consensus        18 ElR~t~sG~~va~FrVAv~~r~~~~~~g~~~d~~t~fi~V~~Wg~~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt   97 (186)
T PRK07772         18 ELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSYETREGEKRT   97 (186)
T ss_pred             eEEEcCCCCEEEEEEEEecCcceecCCCcEeccCceEEEEEEecHHHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEE
Confidence            3577888899999999987541        12368899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeE
Q 027559          101 CYKVVVEDF  109 (222)
Q Consensus       101 ~~eVvV~el  109 (222)
                      .++|+|++|
T Consensus        98 ~~eV~a~~V  106 (186)
T PRK07772         98 VVELEVDEI  106 (186)
T ss_pred             EEEEEEEEc
Confidence            999999954

>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)

Probab=99.68  E-value=5.4e-16  Score=115.62  Aligned_cols=83  Identities=23%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             eeeeeccceEEeeeeeccceee-----ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           30 LENIELNECVTMLDILLLIIHH-----LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~~-----~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      +++.+.+.+++.|.+++.+...     ...++||+|++||++|+.+++||+|||+|+|+|+|+++.|++++|+.++.++|
T Consensus        13 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i   92 (100)
T cd04496          13 LRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEV   92 (100)
T ss_pred             EEECCCCCEEEEEEEEEcCceecccccccccEEEEEEEEhHHHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEE
Confidence            4666778899999998888653     57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEee
Q 027559          105 VVEDFNYV  112 (222)
Q Consensus       105 vV~el~Fv  112 (222)
                      .|++|.++
T Consensus        93 ~~~~i~~~  100 (100)
T cd04496          93 VADRIEFL  100 (100)
T ss_pred             EEEEEEEC
Confidence            99999874

SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart

>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]

Probab=99.67  E-value=1.9e-16  Score=132.23  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             eeeee-ccceEEeeeeeccce------eeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           30 LENIE-LNECVTMLDILLLII------HHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        30 ~~~~~-~~e~vt~~~iav~~r------~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      +++.. ++..++.+.+++.++      +....++||+|++||++||++++||+||++|+|+|+|+++.|++++|++||.+
T Consensus        18 ~r~t~~g~~~v~~~~~a~~r~~~~~~~~~~~~t~~~~vv~wgk~Ae~~~~yl~KG~~V~VeG~l~~~~~~~~~G~~r~~~   97 (167)
T COG0629          18 LRYTPNGGAVVALFSAAVNRRFDNQSGERDEETDWIRVVIWGKLAENAAEYLKKGSLVYVEGRLQTRKWEDQEGQKRYQT   97 (167)
T ss_pred             eeecCCCCeeeEEEEEEeccccccCCcccccccceEEEEEehHHHHHHHHHhcCCCEEEEEEEEEeeeeecCCCcceeeE
Confidence            46666 556667776666664      24446799999999999999999999999999999999999999999555554


Q ss_pred             ----EEEEeeEEeeecCCC
Q 027559          103 ----KVVVEDFNYVRECGQ  117 (222)
Q Consensus       103 ----eVvV~el~Fv~~k~~  117 (222)
                          ++++..++|+++++.
T Consensus        98 ~~~~~~v~~~~~~l~~~~~  116 (167)
T COG0629          98 EIVTEIVADSVQMLGSRKS  116 (167)
T ss_pred             EEEEEEeehhhhhccCccc
Confidence                557777888887654

>PRK02801 primosomal replication protein N; Provisional

Probab=99.63  E-value=3.3e-15  Score=116.21  Aligned_cols=82  Identities=15%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             eeeeeeeccceEEeeeeeccceeec-----eeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           28 IKLENIELNECVTMLDILLLIIHHL-----QCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        28 ~~~~~~~~~e~vt~~~iav~~r~~~-----~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      -.+++.+.+..++.|.||+.+....     +.++||+|++||++||.+++||+||++|.|+|+|++  |++++|++++. 
T Consensus        15 pelr~Tp~G~~v~~f~La~~~~~~ea~~~r~~~~~i~~va~G~~Ae~~~~~l~kGs~v~V~G~L~~--~~~~~g~~~~~-   91 (101)
T PRK02801         15 PKRKVSPSGIPHCQFVLEHRSVQEEAGLHRQAWCRMPVIVSGNQFQAITQSITVGSKITVQGFISC--HQGRNGLSKLV-   91 (101)
T ss_pred             cceEECCCCCeEEEEEEEEeCeEecCCCceeEEEEEEEEEEcHHHHHHHhhcCCCCEEEEEEEEEE--eECCCCCEEEE-
Confidence            3578889999999999999653221     234889999999999999999999999999999998  58899999966 


Q ss_pred             EEEEeeEEeee
Q 027559          103 KVVVEDFNYVR  113 (222)
Q Consensus       103 eVvV~el~Fv~  113 (222)
                       |++++|+|+.
T Consensus        92 -v~~~~i~~l~  101 (101)
T PRK02801         92 -LHAEQIELID  101 (101)
T ss_pred             -EEEEEEEECC
Confidence             9999999973

>PRK05813 single-stranded DNA-binding protein; Provisional

Probab=99.49  E-value=1.5e-13  Score=120.61  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             eeeeeccceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCC-CCceEEEEEEEEee
Q 027559           30 LENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDK-NGKLCLCYKVVVED  108 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dk-dGq~rs~~eVvV~e  108 (222)
                      +++-..++.++.|+|||++  -+..+|||||++|+++||+|.  |+||+.|+|+|+|+  +|++. +|++|+.++|+|++
T Consensus        23 ~~~~~~G~~~~~f~laV~R--~s~~~D~i~v~v~~rlae~~~--l~kG~~v~VeGqlr--sy~~~~~G~~R~vl~V~a~~   96 (219)
T PRK05813         23 FSHEMYGEGFYNFKLEVPR--LSDSKDILPVTVSERLLAGMD--LKVGTLVIVEGQLR--SYNKFIDGKNRLILTVFARN   96 (219)
T ss_pred             EEEEeCCeEEEEEEEEeec--cCCCccEEEEEEEhhhhhhhc--ccCCCEEEEEEEEE--EeccCCCCcEEEEEEEEEEE
Confidence            3556689999999999999  448999999999999999999  99999999999999  77766 79999999999999


Q ss_pred             EEeeecCCC
Q 027559          109 FNYVRECGQ  117 (222)
Q Consensus       109 l~Fv~~k~~  117 (222)
                      |+|+++++.
T Consensus        97 i~~l~~~~~  105 (219)
T PRK05813         97 IEYCDERSD  105 (219)
T ss_pred             EEEccCCCc
Confidence            999998753

>KOG1653 consensus Single-stranded DNA-binding protein [Replication, recombination and repair]

Probab=98.85  E-value=6.4e-09  Score=88.36  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             eeeeccceEEeeeeeccce---------eeceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeecccc-CCCCce-
Q 027559           31 ENIELNECVTMLDILLLII---------HHLQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKV-DKNGKL-   98 (222)
Q Consensus        31 ~~~~~~e~vt~~~iav~~r---------~~~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~-dkdGq~-   98 (222)
                      +.+..+..|+.|+++++.-         .-...+.||.|.+++ .||+.+.+||+||..|||+|+|.++-+. |+.|+. 
T Consensus        71 k~~rngrpVtiFsv~T~~~~k~r~~q~g~~~~~tqWHRVsVf~~~L~d~~~k~lkKGsriyveG~iey~g~~~d~~g~~~  150 (175)
T KOG1653|consen   71 KILRNGRPVTIFSVGTGGMFKQRLYQAGDQPQPTQWHRVSVFNEVLADYALKYLKKGSRIYVEGKIEYRGENDDIQGNVK  150 (175)
T ss_pred             HhhcCCCeEEEEEeecCccccccccccCCcCCcceeEEEEeeCchHHHHHHHHhcCCCEEEEeeeEEeeeeeccccCcee
Confidence            3456678899999876653         346789999999999 8999999999999999999999996665 678887 


Q ss_pred             EEEEEEEEeeEEeeecC
Q 027559           99 CLCYKVVVEDFNYVREC  115 (222)
Q Consensus        99 rs~~eVvV~el~Fv~~k  115 (222)
                      +..+-|++++|.|+...
T Consensus       151 r~~t~iIa~~v~Fl~~a  167 (175)
T KOG1653|consen  151 RIPTIIIARDVSFLIDA  167 (175)
T ss_pred             ecceEEEechhHHHHHH
Confidence            66677788999998753

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands

Probab=96.71  E-value=0.025  Score=39.36  Aligned_cols=49  Identities=20%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEee
Q 027559           56 SSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV  112 (222)
Q Consensus        56 ~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv  112 (222)
                      .-|.|++|++.++...+.|+.|+.|.|.|+++.+    ++|    .++|.+++++.|
T Consensus        27 g~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~----~~~----~~~l~~~~i~~l   75 (75)
T PF01336_consen   27 GSIQVVFFNEEYERFREKLKEGDIVRVRGKVKRY----NGG----ELELIVPKIEIL   75 (75)
T ss_dssp             EEEEEEEETHHHHHHHHTS-TTSEEEEEEEEEEE----TTS----SEEEEEEEEEEE
T ss_pred             ccEEEEEccHHhhHHhhcCCCCeEEEEEEEEEEE----CCc----cEEEEECEEEEC
Confidence            5678999998889999999999999999999986    233    477888877654

The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....

>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ

Probab=95.82  E-value=0.019  Score=42.29  Aligned_cols=47  Identities=15%  Similarity=0.204  Sum_probs=37.7

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEee
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV  112 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv  112 (222)
                      -|+|++|...+..+...++.||.|.|.|++..     +    +..+++.|++++.+
T Consensus        27 ~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~-----~----~G~~ql~v~~i~~~   73 (73)
T cd04487          27 TVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEP-----R----DGQLQIEVESLEVL   73 (73)
T ss_pred             EEEEEEEchhccCCcCCCCCCCEEEEEEEEec-----C----CeEEEEEEeeEEEC
Confidence            47999999988667778999999999999874     2    34488888887653

RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit

Probab=95.36  E-value=0.054  Score=38.62  Aligned_cols=48  Identities=23%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEE
Q 027559           56 SSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFN  110 (222)
Q Consensus        56 ~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~  110 (222)
                      --|.|++|.+..+.+...|+.|+.|.|.|++..+.+.   |    .+++.|+++.
T Consensus        28 ~~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~---~----~~~l~v~~i~   75 (78)
T cd04489          28 ASIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPR---G----GYQLIVEEIE   75 (78)
T ss_pred             eEEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCC---C----EEEEEEEEEE
Confidence            3478999999999999999999999999999976442   2    2667777664

E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=95.10  E-value=0.13  Score=34.26  Aligned_cols=34  Identities=21%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeec
Q 027559           56 SSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSY   89 (222)
Q Consensus        56 ~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr   89 (222)
                      ..|.|++|.+..+.+..+++.|+.|.|.|++..+
T Consensus        29 ~~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~~   62 (75)
T cd03524          29 GTIRVTLFGELAEELENLLKEGQVVYIKGKVKKF   62 (75)
T ss_pred             CEEEEEEEchHHHHHHhhccCCCEEEEEEEEEec
Confidence            5779999999999988999999999999999764

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco

>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=93.72  E-value=0.14  Score=38.97  Aligned_cols=46  Identities=20%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             eeEEEEEechh--HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeee
Q 027559           56 SSILLAVGGDM--AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR  113 (222)
Q Consensus        56 ~wI~Vv~WGkl--AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~  113 (222)
                      .-|+|++|...  +..+..-|+.||.|.|.|++..+.            ++.|+.++.+.
T Consensus        28 ~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~------------ql~ve~l~~~g   75 (91)
T cd04482          28 GEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT------------TLNLEKLRVIR   75 (91)
T ss_pred             cEEEEEEECcccccccccCCCCCCCEEEEEEEEecCC------------EEEEEEEEECC
Confidence            46789999987  667778899999999999987654            57778777654

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain

Probab=93.03  E-value=0.32  Score=37.47  Aligned_cols=48  Identities=27%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             eeEEEEEechhHHHHH-hhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEE
Q 027559           56 SSILLAVGGDMAQLCQ-KHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFN  110 (222)
Q Consensus        56 ~wI~Vv~WGklAE~~a-qyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~  110 (222)
                      --|+|++|...+..+. .-++.|+.|.|.|++..+..   .|+    +++.|.+++
T Consensus        50 a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~---~G~----~sl~v~~i~   98 (99)
T PF13742_consen   50 ASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEP---RGS----LSLIVEDID   98 (99)
T ss_pred             cEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECC---CcE----EEEEEEEeE
Confidence            5679999999999998 89999999999999998753   453    566666653

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)

Probab=92.24  E-value=1.2  Score=31.44  Aligned_cols=49  Identities=20%  Similarity=0.373  Sum_probs=36.1

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC  115 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k  115 (222)
                      -|.|.+|++.-+. ...++.|..|.|.|++..+     +|    ..++.+.++.-+...
T Consensus        31 ~i~~~~f~~~~~~-~~~l~~g~~v~v~G~v~~~-----~~----~~~l~~~~i~~l~~~   79 (83)
T cd04492          31 EIEAKLWDASEED-EEKFKPGDIVHVKGRVEEY-----RG----RLQLKIQRIRLVTEE   79 (83)
T ss_pred             eEEEEEcCCChhh-HhhCCCCCEEEEEEEEEEe-----CC----ceeEEEEEEEECCcc
Confidence            4789999965544 6789999999999999642     23    256777787766643

Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.

>PRK00036 primosomal replication protein N; Reviewed

Probab=91.74  E-value=0.66  Score=37.20  Aligned_cols=79  Identities=14%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             eeeeeeccceEEeeeeeccce-----eeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559           29 KLENIELNECVTMLDILLLII-----HHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK  103 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r-----~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e  103 (222)
                      +++|.+.+-..+.|-+.=...     ....-.+-|++++-|++|+...+ ++.|..|.|+|.|..    ..+|..+  .-
T Consensus        15 ~lryTPAGIp~~~~~LeH~S~q~EAG~~Rqv~~~i~ava~G~~a~~~~~-l~~Gs~v~v~GFLa~----~~~~~~~--LV   87 (107)
T PRK00036         15 AMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLAD-TPLGTEMQVQGFLAP----ARKDSVK--VK   87 (107)
T ss_pred             ccccCCCCCceEEEEEEEeEEeEeCCCcceEEEEEEEEEEhhHHHHhcc-cCCCCEEEEEEEEEE----CCCCCCc--EE
Confidence            456666666666665411111     12223577899999999999986 999999999999997    2355544  66


Q ss_pred             EEEeeEEeeec
Q 027559          104 VVVEDFNYVRE  114 (222)
Q Consensus       104 VvV~el~Fv~~  114 (222)
                      ..+++++++.+
T Consensus        88 LHi~~Ie~i~~   98 (107)
T PRK00036         88 LHLQQARRIAG   98 (107)
T ss_pred             EEhHHeEEccc
Confidence            67899999954

>COG3390 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.27  E-value=0.28  Score=43.14  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             hHHHHHHHHhhhhhheeeeeeeec------cceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559           12 MFNLLLTLLGISIRLLIKLENIEL------NECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQ   85 (222)
Q Consensus        12 ~~~~~~~~~~~~i~~~~~~~~~~~------~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGr   85 (222)
                      -=|.|||=||+.||+.+=+-.+-.      +..+.++.     -.|+..+||+=.--+..=|..+.+-+.++|.|.|.|+
T Consensus        33 sp~yliTPlG~k~nRifivGtltek~~i~ed~~~~R~r-----VvDpTGsF~Vyag~yqPEa~a~l~~ve~~~~VaViGK  107 (196)
T COG3390          33 SPNYLITPLGLKVNRIFIVGTLTEKEGIGEDREYWRIR-----VVDPTGSFYVYAGQYQPEAKAFLEDVEVPDLVAVIGK  107 (196)
T ss_pred             CCcEEechhhhheeEEEEEEEEEeccCcCCcccEEEEE-----EecCCceEEEEcCCCChHHHHHHHhccCCceEEEecc
Confidence            458999999999999876544321      12233332     2466777776444566778889999999999999999


Q ss_pred             eeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559           86 LHSYSKVDKNGKLCLCYKVVVEDFNYVRE  114 (222)
Q Consensus        86 L~sr~~~dkdGq~rs~~eVvV~el~Fv~~  114 (222)
                      +.++  ++.+|.  +.+.|.++.++-++.
T Consensus       108 i~~y--~~d~g~--~~~siRpE~vs~vde  132 (196)
T COG3390         108 IRTY--RTDEGV--VLFSIRPELVSKVDE  132 (196)
T ss_pred             ccee--ecCCCc--eEEEechhhhhhcCH
Confidence            8864  455677  346666777776654

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=87.53  E-value=0.85  Score=34.44  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccc
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSK   91 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~   91 (222)
                      -|.|++||+.|+.+....  |+.|.+.| ++...|
T Consensus        40 ~i~vtLWg~~a~~~~~~~--~~vv~~~~-~~i~~~   71 (101)
T cd04475          40 SVELTLWGEQAELFDGSE--NPVIAIKG-VKVSEF   71 (101)
T ss_pred             EEEEEEEHHHhhhcccCC--CCEEEEEe-eEEEec
Confidence            568999999999988765  99999988 444455

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona

>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]

Probab=86.69  E-value=3  Score=33.39  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             heeeeeeeeccceEEeeeeeccce-----eeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           26 LLIKLENIELNECVTMLDILLLII-----HHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        26 ~~~~~~~~~~~e~vt~~~iav~~r-----~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      ...++++.+.+-..+.|-+--...     ..-.-++-||+.+=|+.|+..-+.+..|..|.|+|.|...+-  .+|-  .
T Consensus        15 k~~~r~~sPsGIphc~f~Lehrs~q~Eag~~RQv~~~mpv~vsG~qa~~lt~~i~~Gs~i~v~GFla~~~~--~sg~--~   90 (103)
T COG2965          15 KVPVRRYSPSGIPHCQFVLEHRSWQEEAGFQRQVWCEMPVRVSGRQAEELTQSITVGSYILVVGFLACHKR--RSGL--S   90 (103)
T ss_pred             ccceeeeCCCCCeeEEEEEeecchhhhCCcceeEEEEccEEeechhhhhhhhccccccEEEEEEEEEeecc--cCCc--c
Confidence            344567777777777664421111     123345668899999999999999999999999999987653  3454  3


Q ss_pred             EEEEEEeeEEeee
Q 027559          101 CYKVVVEDFNYVR  113 (222)
Q Consensus       101 ~~eVvV~el~Fv~  113 (222)
                      ..-+.+.++.|++
T Consensus        91 ~lvlha~qi~~id  103 (103)
T COG2965          91 KLVLHAEQIEFID  103 (103)
T ss_pred             EEEEEeeEEEecC
Confidence            4777888888864

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed

Probab=86.47  E-value=1.1  Score=42.58  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=42.2

Q ss_pred             eeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeee
Q 027559           55 LSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR  113 (222)
Q Consensus        55 t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~  113 (222)
                      ..-|.|++|...+..+...++.|+.|.|.|++..+.   +.|.    ++++|+++.-.+
T Consensus        51 ~a~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~---~~g~----~ql~v~~i~~~g  102 (438)
T PRK00286         51 IAQIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYE---PRGD----YQLIVEEIEPAG  102 (438)
T ss_pred             CcEEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEEC---CCCC----EEEEEEEeeeCC
Confidence            456899999999988888899999999999999864   3444    778888887543

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)

Probab=86.28  E-value=5.2  Score=27.58  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeee
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS   88 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~s   88 (222)
                      -+.|++|.+.-+.+.+.+++|..|.|.|++..
T Consensus        31 ~~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~   62 (84)
T cd04485          31 SIEVVVFPETYEKYRDLLKEDALLLVEGKVER   62 (84)
T ss_pred             eEEEEECHHHHHHHHHHhcCCCEEEEEEEEEe
Confidence            36899998775566889999999999999975

The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=86.04  E-value=1.1  Score=42.99  Aligned_cols=52  Identities=10%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEee
Q 027559           54 CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV  112 (222)
Q Consensus        54 ~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv  112 (222)
                      +.--|+|+||...|..+.-.++-|+.|.|.|++..+..   .|.    |+++|++++-.
T Consensus        44 ~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~---~G~----~ql~v~~i~~~   95 (432)
T TIGR00237        44 ENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEP---RGD----YQIICFEMQPA   95 (432)
T ss_pred             CCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECC---CCc----EEEEEEEeccC
Confidence            34568999999999888888999999999999998753   344    88888888754

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=85.45  E-value=1  Score=34.68  Aligned_cols=34  Identities=12%  Similarity=-0.013  Sum_probs=30.1

Q ss_pred             eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEee
Q 027559           54 CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLH   87 (222)
Q Consensus        54 ~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~   87 (222)
                      ...-|.+++|++.|+.+...|+.|+.++|+|-..
T Consensus        45 ~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V   78 (104)
T cd04474          45 DGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSV   78 (104)
T ss_pred             CCCEEEEEEehHHHHHhhcccccccEEEEeccEE
Confidence            4567899999999999999999999999998443

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit

Probab=85.43  E-value=3.7  Score=30.44  Aligned_cols=44  Identities=16%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             eEEEEEechhHH--HHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEe
Q 027559           57 SILLAVGGDMAQ--LCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNY  111 (222)
Q Consensus        57 wI~Vv~WGklAE--~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~F  111 (222)
                      -+.|++|.+.-+  .+...|+.|..|+|.|++..     .++      ++.|+++-+
T Consensus        29 ~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~-----~~~------~l~~~~I~~   74 (79)
T cd04490          29 RITVLLTKDKEELFEEAEDILPDEVIGVSGTVSK-----DGG------LIFADEIFR   74 (79)
T ss_pred             EEEEEEeCchhhhhhhhhhccCCCEEEEEEEEec-----CCC------EEEEEEeEc
Confidence            358999999988  89999999999999999932     122      666777654

PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=80.90  E-value=1.6  Score=42.69  Aligned_cols=52  Identities=15%  Similarity=0.160  Sum_probs=43.8

Q ss_pred             eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEee
Q 027559           54 CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV  112 (222)
Q Consensus        54 ~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv  112 (222)
                      +.--|.|+||...+..+.--++-|+.|.|.|++..+..   .|    .|++++++++.-
T Consensus        50 ~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~---rG----~YQi~~~~~~p~  101 (440)
T COG1570          50 ERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEP---RG----DYQIVAESMEPA  101 (440)
T ss_pred             CCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcC---CC----ceEEEEecCCcC
Confidence            34568999999999999989999999999999998753   34    489999998854

>PF11506 DUF3217: Protein of unknown function (DUF3217); InterPro: IPR024506 This family of proteins with unknown function appears to be restricted to Mycoplasma

Probab=80.20  E-value=12  Score=29.51  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             eeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559           53 QCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK  103 (222)
Q Consensus        53 ~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e  103 (222)
                      .=++|+-+-+-|.+|--..+|.+|=.-|.|+|.|+++. +-+.|...+.++
T Consensus        37 ~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~-ekkS~iWKT~I~   86 (104)
T PF11506_consen   37 TFTDYYVIYANGQLAFELEKYTQKHKTISIEGILRTYL-EKKSKIWKTTIE   86 (104)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHTT-SEEEEEEEEEEEE-ETTTTEEEEEEE
T ss_pred             cceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH-HHhcccceeeEE
Confidence            34678788999999999999999999999999999754 224566554443

; PDB: 2HQL_E.

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)

Probab=80.08  E-value=3  Score=30.29  Aligned_cols=30  Identities=17%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEE-EEeeec
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHSY   89 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~Vs-GrL~sr   89 (222)
                      -|++++|+..|   ...++.|+.|.+. |+.+.+
T Consensus        35 ~i~~~~W~~~~---~~~~~~G~vv~i~~~~v~~~   65 (82)
T cd04491          35 TIRFTLWDEKA---ADDLEPGDVVRIENAYVREF   65 (82)
T ss_pred             EEEEEEECchh---cccCCCCCEEEEEeEEEEec
Confidence            47999999988   6779999999999 777654

SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3koj_A	108	Uncharacterized protein YCF41; single-strand bindi	99.86
3vdy_A	116	SSB, single-stranded DNA-binding protein SSBB; OB	99.84
2vw9_A	134	Single-stranded DNA binding protein; DNA replicati	99.83
3ulp_A	124	Single-strand binding protein; OB-fold, DNA bindin	99.82
3tqy_A	158	Single-stranded DNA-binding protein; DNA replicati	99.82
3ull_A	132	DNA binding protein; DNA replication, mitochondrio	99.82
1z9f_A	153	Single-strand binding protein; TM0604, single stra	99.81
1qvc_A	145	Single stranded DNA binding protein monomer; beta-	99.8
3lgj_A	169	Single-stranded DNA-binding protein; niaid, CAT sc	99.8
4dam_A	128	Single-stranded DNA-binding protein 1; OB-fold; 1.	99.79
3pgz_A	193	Single-stranded DNA-binding protein; ssgcid, singl	99.78
3afp_A	168	Single-stranded DNA-binding protein; OB-fold, quat	99.78
1eqq_A	178	Single stranded DNA binding protein; beta barrel,	99.76
4gs3_A	107	Single-stranded DNA-binding protein; primosome, ol	99.76
3k7u_C	148	MP18 RNA editing complex protein; OB-fold, RNA-edi	99.76
2fxq_A	264	Single-strand binding protein; strand beta-sheet e	99.73
1txy_A	104	Primosomal replication protein N; OB fold, dimer,	99.73
3eiv_A	199	Single-stranded DNA-binding protein 2; DNA damage,	99.73
1v1q_A	134	Primosomal replication protein N; primosome, DNA r	99.72
1se8_A	301	Single-strand binding protein; DNA binding protein	99.71
2fxq_A	264	Single-strand binding protein; strand beta-sheet e	99.7
3k81_C	164	MP18 RNA editing complex protein; krepa6, single d	99.68
1se8_A	301	Single-strand binding protein; DNA binding protein	99.68
3fhw_A	115	Primosomal replication protein N; PRIB BPR162 X-RA	99.63
4dni_A	257	Fusion protein of RNA-editing complex proteins MP	99.62
3k8a_A	103	Putative primosomal replication protein; beta-barr	99.52
3stb_C	148	RNA-editing complex protein MP42; editosome, nanob	99.42
4dni_A	257	Fusion protein of RNA-editing complex proteins MP	99.41
3en2_A	101	Probable primosomal replication protein N; PRIB RS	99.28
4dka_C	105	RNA-editing complex protein MP81; krepa1, VHH, sin	96.35
2k50_A	115	Replication factor A related protein; uncharacteri	87.57
3dm3_A	105	Replication factor A; probably plays AN essential	86.87
3e0e_A	97	Replication protein A; structural genomics, PSI-2,	86.24
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	81.73

>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}

Probab=99.86  E-value=8.4e-22  Score=154.48  Aligned_cols=82  Identities=17%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             eeeeeecc-ceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEe
Q 027559           29 KLENIELN-ECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVE  107 (222)
Q Consensus        29 ~~~~~~~~-e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~  107 (222)
                      .+++.+.+ .+++.|+||++......+++||+|++||++||.|++||+|||+|+|+|+|++++|++++|++++.+||+|+
T Consensus        25 elR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~  104 (108)
T 3koj_A           25 QLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVT  104 (108)
T ss_dssp             EEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEE
Confidence            46788877 89999999999655566899999999999999999999999999999999999999999999999999999


Q ss_pred             eEE
Q 027559          108 DFN  110 (222)
Q Consensus       108 el~  110 (222)
                      +|.
T Consensus       105 ~i~  107 (108)
T 3koj_A          105 RVH  107 (108)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}

Probab=99.84  E-value=1e-20  Score=147.58  Aligned_cols=89  Identities=9%  Similarity=0.066  Sum_probs=74.4

Q ss_pred             eeeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      .+++.+.+..++.|+||+.++.    ....++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.++|
T Consensus        19 e~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev   98 (116)
T 3vdy_A           19 DLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEV   98 (116)
T ss_dssp             EEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEE
T ss_pred             EEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEE
Confidence            4577888899999999998752    234899999999999999999999999999999999999999999999999999


Q ss_pred             EEeeEEeeecCCC
Q 027559          105 VVEDFNYVRECGQ  117 (222)
Q Consensus       105 vV~el~Fv~~k~~  117 (222)
                      +|++|+||++++.
T Consensus        99 ~a~~i~~l~~~~~  111 (116)
T 3vdy_A           99 LADTVRFMDPKPR  111 (116)
T ss_dssp             EEEEEEECC----
T ss_pred             EEEEEEEccCCCc
Confidence            9999999987653

>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}

Probab=99.83  E-value=2.9e-20  Score=149.34  Aligned_cols=89  Identities=12%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+.+++.|+||+.++..      .+.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.+
T Consensus        16 elr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~   95 (134)
T 2vw9_A           16 ELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRH   95 (134)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEE
Confidence            35788888999999999997531      227999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCC
Q 027559          103 KVVVEDFNYVRECGQ  117 (222)
Q Consensus       103 eVvV~el~Fv~~k~~  117 (222)
                      +|+|++|+|++++..
T Consensus        96 ev~a~~i~~l~~~~~  110 (134)
T 2vw9_A           96 TITADSLQFMDKKSD  110 (134)
T ss_dssp             EEEEEEEEECCCC--
T ss_pred             EEEEEEEEEccCCcc
Confidence            999999999987643

>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}

Probab=99.82  E-value=3.6e-20  Score=146.32  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCC--CCce
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDK--NGKL   98 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dk--dGq~   98 (222)
                      .+++.+.+.+++.|+||+.++..       .+.++||+|++|| ++||.|++||+||++|+|+|+|++++|+|+  +|++
T Consensus        20 elr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~   99 (124)
T 3ulp_A           20 DIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQP   99 (124)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCC
T ss_pred             EEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCE
Confidence            35778888999999999988632       2389999999999 999999999999999999999999999999  9999


Q ss_pred             EEEEEEEEe----eEEeeecCCC
Q 027559           99 CLCYKVVVE----DFNYVRECGQ  117 (222)
Q Consensus        99 rs~~eVvV~----el~Fv~~k~~  117 (222)
                      ++.++|+|+    +|+||++++.
T Consensus       100 ~~~~ev~a~~~g~~i~~l~~k~~  122 (124)
T 3ulp_A          100 KQITEIILSYNKGDLIFLDDKRN  122 (124)
T ss_dssp             EEEEEEEECTTTCEEEECC----
T ss_pred             EEEEEEEEEcCCCcEEEecCcCC
Confidence            999999998    9999998753

>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}

Probab=99.82  E-value=6.1e-20  Score=151.54  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=78.1

Q ss_pred             eeeeeeccceEEeeeeeccceeec-------eeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHHL-------QCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~~-------~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++.+.+.+++.|+||+.++...       +.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus        22 elr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~  101 (158)
T 3tqy_A           22 EVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYT  101 (158)
T ss_dssp             EEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEE
T ss_pred             EEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence            367888889999999999875321       2699999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeEEeeecCCC
Q 027559          102 YKVVVEDFNYVRECGQ  117 (222)
Q Consensus       102 ~eVvV~el~Fv~~k~~  117 (222)
                      ++|+|++|+||++++.
T Consensus       102 ~eV~a~~i~~L~~k~~  117 (158)
T 3tqy_A          102 TEIIANEMHMLDNRGG  117 (158)
T ss_dssp             EEEEEEEEEECC----
T ss_pred             EEEEEeEEEEccCCcc
Confidence            9999999999998754

>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A

Probab=99.82  E-value=2.3e-20  Score=149.06  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             eeeeeeccceEEeeeeeccceee------------ceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCC
Q 027559           29 KLENIELNECVTMLDILLLIIHH------------LQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKN   95 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~------------~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkd   95 (222)
                      .+++.+.+.+++.|+||++++..            ...++||+|++|| ++||.|++||+||++|+|+|+|++++|+|++
T Consensus        28 elr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~d  107 (132)
T 3ull_A           28 VLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKN  107 (132)
T ss_dssp             EEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSS
T ss_pred             EEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCC
Confidence            35778888999999999998632            2589999999999 5999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeeEEeeecCCC
Q 027559           96 GKLCLCYKVVVEDFNYVRECGQ  117 (222)
Q Consensus        96 Gq~rs~~eVvV~el~Fv~~k~~  117 (222)
                      |++++.++|+|++|+||+++++
T Consensus       108 G~~r~~~ev~a~~i~~l~~~~k  129 (132)
T 3ull_A          108 NVRRQATTIIADNIIFLSDQTK  129 (132)
T ss_dssp             SEECCCEEEEEEEEECC-----
T ss_pred             CCEEEEEEEEEEEEEEccCCCc
Confidence            9999999999999999987643

>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}

Probab=99.81  E-value=6e-20  Score=151.16  Aligned_cols=90  Identities=12%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             eeeeeeccceEEeeeeeccc-ee----ece-eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLI-IH----HLQ-CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~-r~----~~~-~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+..++.|+||+++ +.    ... +++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.+
T Consensus        30 elr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~  109 (153)
T 1z9f_A           30 EERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSP  109 (153)
T ss_dssp             EEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEE
T ss_pred             EEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEE
Confidence            36788888999999999998 42    112 2999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCCC
Q 027559          103 KVVVEDFNYVRECGQG  118 (222)
Q Consensus       103 eVvV~el~Fv~~k~~~  118 (222)
                      +|+|++|+||+++++.
T Consensus       110 eV~a~~i~~l~~~~~~  125 (153)
T 1z9f_A          110 EVVANVVRFMDRKPAE  125 (153)
T ss_dssp             EEEEEEEEECC-----
T ss_pred             EEEEEEEEEccCCCcc
Confidence            9999999999876543

>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A

Probab=99.80  E-value=1.4e-19  Score=147.06  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++++.+.+++.|+||+.++..       .+.++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus        19 elr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~   98 (145)
T 1qvc_A           19 EVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT   98 (145)
T ss_dssp             EEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEE
T ss_pred             EEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEE
Confidence            35778888999999999988521       13699999999999999999999999999999999999999999999999


Q ss_pred             EEE---EEeeEEeeecCCCC
Q 027559          102 YKV---VVEDFNYVRECGQG  118 (222)
Q Consensus       102 ~eV---vV~el~Fv~~k~~~  118 (222)
                      ++|   +|++|+||++++..
T Consensus        99 ~ei~a~va~~i~~l~~~~~~  118 (145)
T 1qvc_A           99 TEVVVNVGGTMQMLGGRQGG  118 (145)
T ss_dssp             EEEECTTCEEEECCCCSCCC
T ss_pred             EEEeeeEeCEEEEccCCCcC
Confidence            999   99999999876543

>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}

Probab=99.80  E-value=1.4e-19  Score=151.27  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++.+.+.+++.|+||++++..       .+.++||+|++||+ +||.|++||+||++|+|+|+|++++|+|++|+++|
T Consensus        37 elr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~  116 (169)
T 3lgj_A           37 ESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRY  116 (169)
T ss_dssp             EEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEECC--------C
T ss_pred             eEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEEEEEEEECCCCCEEE
Confidence            35788888999999999988521       13799999999999 99999999999999999999999999999999999


Q ss_pred             EEEEEE----eeEEeeecCCCCc
Q 027559          101 CYKVVV----EDFNYVRECGQGL  119 (222)
Q Consensus       101 ~~eVvV----~el~Fv~~k~~~~  119 (222)
                      .++|+|    ++|+||++++...
T Consensus       117 ~~eIva~~~~~~i~~L~~k~~~~  139 (169)
T 3lgj_A          117 TTEIVLPQYKGELHLLDAKKEQS  139 (169)
T ss_dssp             EEEEEECTTCCEEEEECC-----
T ss_pred             EEEEEEEeccCcEEEccCCCccc
Confidence            999998    5899999876544

>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}

Probab=99.79  E-value=5.3e-19  Score=141.69  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=73.7

Q ss_pred             eeeeeeccceEEeeeeeccceee--------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH--------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~--------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++.+.+ +++.|+||++++..        +.+++||+|++||++||.|++||+||++|+|+|+|++++| |+||++++
T Consensus        29 elr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~-dkdG~~r~  106 (128)
T 4dam_A           29 VFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTD-VREGQSRT  106 (128)
T ss_dssp             EEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEE-EETTEEEE
T ss_pred             EEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEeEE-cCCCCEEE
Confidence            35778888 99999999997631        1389999999999999999999999999999999999999 99999999


Q ss_pred             EEEEEEeeEEee
Q 027559          101 CYKVVVEDFNYV  112 (222)
Q Consensus       101 ~~eVvV~el~Fv  112 (222)
                      .++|+|++|..-
T Consensus       107 ~~ev~a~~vg~d  118 (128)
T 4dam_A          107 SADIDAVAIGHD  118 (128)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEec
Confidence            999999998753

>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}

Probab=99.78  E-value=7e-19  Score=150.42  Aligned_cols=89  Identities=16%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++++.+.+|+.|+||++++..       .+.++||+|++|++ +||.|++||+||++|+|+|+|++++|+|++|+++|
T Consensus        40 ElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~  119 (193)
T 3pgz_A           40 EIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRY  119 (193)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEE
T ss_pred             eEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEE
Confidence            36788888999999999988531       23799999999996 99999999999999999999999999999999999


Q ss_pred             EEEEEEe----eEEeeecCCC
Q 027559          101 CYKVVVE----DFNYVRECGQ  117 (222)
Q Consensus       101 ~~eVvV~----el~Fv~~k~~  117 (222)
                      .++|+|+    +|+||++++.
T Consensus       120 ~tEVva~~~~~~i~fL~sk~~  140 (193)
T 3pgz_A          120 TTEIVLQKYRGELQMLDGRAA  140 (193)
T ss_dssp             EEEEEECTTCCEEEECC----
T ss_pred             EEEEEEEeccCceEECcCCCC
Confidence            9999999    6899998754

>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*

Probab=99.78  E-value=3.7e-19  Score=148.12  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=76.3

Q ss_pred             eeeeeeccceEEeeeeeccceee--------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH--------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~--------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++++.+.+++.|+||++++..        ..+++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++
T Consensus        18 elr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~   97 (168)
T 3afp_A           18 ELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRT   97 (168)
T ss_dssp             CCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEE
T ss_pred             EEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEE
Confidence            35788888999999999976421        1269999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEe----eEEeeecCCC
Q 027559          101 CYKVVVE----DFNYVRECGQ  117 (222)
Q Consensus       101 ~~eVvV~----el~Fv~~k~~  117 (222)
                      .++|+|+    +|+|+.++..
T Consensus        98 ~~ev~a~~v~~~l~~l~~~~~  118 (168)
T 3afp_A           98 VVEVEVDEIGPSLRYATAKVN  118 (168)
T ss_dssp             EEEEEEEEEEECCSSEEEEEE
T ss_pred             EEEEEEEEeecCEEEeccccc
Confidence            9999877    7899986543

>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3

Probab=99.76  E-value=2.9e-19  Score=150.30  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++++.+.+++.|+||+.++..       .+.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus        20 elr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~   99 (178)
T 1eqq_A           20 EVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT   99 (178)
T ss_dssp             CCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCEEEEEEEECSSSEEEEE
T ss_pred             EEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence            35788888999999999987532       13699999999999999999999999999999999999999999999999


Q ss_pred             EEE---EEeeEEeeecCCC
Q 027559          102 YKV---VVEDFNYVRECGQ  117 (222)
Q Consensus       102 ~eV---vV~el~Fv~~k~~  117 (222)
                      ++|   +|++|+||+++..
T Consensus       100 ~eI~v~va~~i~~l~~~~~  118 (178)
T 1eqq_A          100 TEVVVNVGGTMQMLGGRQG  118 (178)
T ss_dssp             EEEECSSSCCEECSCC---
T ss_pred             EEEeeeecCeEEEccccCC
Confidence            999   9999999987644

>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}

Probab=99.76  E-value=6.8e-19  Score=138.14  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             eeeeeeeccceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeee-ccccCCCCceEEEEEEEE
Q 027559           28 IKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS-YSKVDKNGKLCLCYKVVV  106 (222)
Q Consensus        28 ~~~~~~~~~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~s-r~~~dkdGq~rs~~eVvV  106 (222)
                      ..+++.+.++.++.|+|||++..  .++|||+|++|+++||.|..|  ||++|+|+|+|++ +.|++++|++|+.++|+|
T Consensus        24 pelr~t~~G~~v~~f~lAV~R~~--~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a   99 (107)
T 4gs3_A           24 LEFSHELYGEKFFNFILEVPRLS--ETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEEGKNKLILTVFA   99 (107)
T ss_dssp             CEEEEEETTEEEEEEEEEEECTT--SCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC--------EEEEEEE
T ss_pred             ceEEEecCCcEEEEEEEEeCCCC--CCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCCCCEEEEEEEEE
Confidence            34678889999999999999875  478999999999999999765  9999999999997 788999999999999999


Q ss_pred             eeEEeee
Q 027559          107 EDFNYVR  113 (222)
Q Consensus       107 ~el~Fv~  113 (222)
                      ++|+||+
T Consensus       100 ~~i~fld  106 (107)
T 4gs3_A          100 RDISVVP  106 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            9999996

>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D

Probab=99.76  E-value=1.9e-18  Score=142.03  Aligned_cols=85  Identities=9%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             eeeeccceEEeeeeeccceee-------ceeeeeEEEEEechh-HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           31 ENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        31 ~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGkl-AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      ++. .+.+++.|+||++++..       .+.++||+|++||++ ||.|++||+||++|+|+|+|++++|+|++|+++|.+
T Consensus        21 r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGrL~~r~~~dkdG~kr~~t   99 (148)
T 3k7u_C           21 GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYF   99 (148)
T ss_dssp             EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEECCCSCCC-----CC
T ss_pred             eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEEEEeeeeECCCCCEEEEE
Confidence            566 78899999999997531       268999999999997 999999999999999999999999999999999999


Q ss_pred             EEEEe-----eEEeeecCC
Q 027559          103 KVVVE-----DFNYVRECG  116 (222)
Q Consensus       103 eVvV~-----el~Fv~~k~  116 (222)
                      +|++-     .+.+|.++.
T Consensus       100 eVi~v~~~~g~~~ll~~~r  118 (148)
T 3k7u_C          100 PYIQVQPPHGQVAVIHGDR  118 (148)
T ss_dssp             EEEEECTTTCEEEEEECCC
T ss_pred             EEEEEecCCCeEEEccCCC
Confidence            99875     599998653

>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A

Probab=99.73  E-value=7.5e-18  Score=147.72  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=76.4

Q ss_pred             eeeeeeccceEEeeeeecccee---eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH---HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVV  105 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~---~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVv  105 (222)
                      .+++.+.+.+++.|+||++++.   ....++||+|++||++||.|+ ||+||++|+|+|+|++++|+|++|++++.++|+
T Consensus       142 e~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~  220 (264)
T 2fxq_A          142 DLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVE  220 (264)
T ss_dssp             CCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEE
Confidence            3577888899999999999863   345789999999999999999 999999999999999999999999999999999


Q ss_pred             EeeEEeeecCCC
Q 027559          106 VEDFNYVRECGQ  117 (222)
Q Consensus       106 V~el~Fv~~k~~  117 (222)
                      |++|+|+++++.
T Consensus       221 a~~i~~l~~~~~  232 (264)
T 2fxq_A          221 ALRLERPTRGPA  232 (264)
T ss_dssp             EEEEECCCC---
T ss_pred             EEEEEECccccc
Confidence            999999987654

>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A

Probab=99.73  E-value=5.4e-18  Score=130.52  Aligned_cols=81  Identities=12%  Similarity=0.005  Sum_probs=63.6

Q ss_pred             eeeeeeccceEEeeeeeccceeeceeeee-------EEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHHLQCLSS-------ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~~~~t~w-------I~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++.+.+.+++.|+||+...  ..+++|       |+|++||++||.|++||+||++|+|+|+|+++  +|++|+++  
T Consensus        16 elR~t~~G~~v~~f~lA~~~~--~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~--~~~~G~~r--   89 (104)
T 1txy_A           16 LRKVSPSGIPHCQFVLEHRSV--QEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH--KAKNGLSK--   89 (104)
T ss_dssp             EEEECTTSCEEEEEEEEEEEE--EEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC----------C--
T ss_pred             eEEECCCCCEEEEEEEEEeCc--cccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEec--cCCCCCEE--
Confidence            478899999999999998533  346677       99999999999999999999999999999998  78999988  


Q ss_pred             EEEEEeeEEeeecC
Q 027559          102 YKVVVEDFNYVREC  115 (222)
Q Consensus       102 ~eVvV~el~Fv~~k  115 (222)
                      ++|+|++|+|++++
T Consensus        90 ~~v~~~~i~~l~~~  103 (104)
T 1txy_A           90 MVLHAEQIELIDSG  103 (104)
T ss_dssp             CEEEEEEEEEC---
T ss_pred             EEEEEEEEEECcCC
Confidence            99999999999754

>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}

Probab=99.73  E-value=8.3e-18  Score=144.31  Aligned_cols=84  Identities=15%  Similarity=0.082  Sum_probs=66.5

Q ss_pred             eeeeeeccceEEeeeeecccee-e-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-H-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++.+.+..|+.|+||++++. +       +.+++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++
T Consensus        18 ElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~   97 (199)
T 3eiv_A           18 ELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRT   97 (199)
T ss_dssp             EEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CC
T ss_pred             eEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEE
Confidence            4578888899999999997541 1       2379999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeEEee
Q 027559          101 CYKVVVEDFNYV  112 (222)
Q Consensus       101 ~~eVvV~el~Fv  112 (222)
                      .++|+|++|..-
T Consensus        98 ~~eVvA~~Ig~d  109 (199)
T 3eiv_A           98 VYELDVDEVGAS  109 (199)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEecc
Confidence            999999988763

>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A

Probab=99.72  E-value=1.4e-17  Score=135.01  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=73.2

Q ss_pred             eeeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           28 IKLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        28 ~~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      -.++|.+.+.+++.|+||+.+..     ..+.++||+|++||++||.|++||+||++|+|+|+|++++  +++|++++.+
T Consensus        32 PElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~--~k~G~kr~~~  109 (134)
T 1v1q_A           32 PLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHK--AKNGLSKMVL  109 (134)
T ss_dssp             EEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEEC--TTTTSCEEEE
T ss_pred             CceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEE--CCCCCEEEEE
Confidence            35789999999999999986532     2235789999999999999999999999999999999984  7899998776


Q ss_pred             EEEEeeEEeeecCC
Q 027559          103 KVVVEDFNYVRECG  116 (222)
Q Consensus       103 eVvV~el~Fv~~k~  116 (222)
                        +|++|+|+++++
T Consensus       110 --~a~~i~~l~~k~  121 (134)
T 1v1q_A          110 --HAEQIELIDSVD  121 (134)
T ss_dssp             --EEEEEEETTSCS
T ss_pred             --EEEEEEECcCCC
Confidence              899999998654

>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3

Probab=99.71  E-value=3.6e-17  Score=147.09  Aligned_cols=89  Identities=13%  Similarity=-0.033  Sum_probs=75.3

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhh-cCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKH-LKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqy-LkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++.+.+..++.|+||+.++.      ..+.++||+|++||++||.|++| |+||++|+|+|+|++++|+|++|++++.
T Consensus        19 elr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~   98 (301)
T 1se8_A           19 ELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSA   98 (301)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEE
T ss_pred             eEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence            4678888999999999998642      23468999999999999999999 9999999999999999999999999999


Q ss_pred             EEEEEeeEEeeecCCC
Q 027559          102 YKVVVEDFNYVRECGQ  117 (222)
Q Consensus       102 ~eVvV~el~Fv~~k~~  117 (222)
                      ++|+|++|+|+++++.
T Consensus        99 ~ev~a~~i~~l~~~~~  114 (301)
T 1se8_A           99 VNVKALRMEQLGTQPE  114 (301)
T ss_dssp             EEEEEEEEEECSSCCC
T ss_pred             EEEEEeEEEEeecccc
Confidence            9999999999987653

>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A

Probab=99.70  E-value=3.4e-17  Score=143.54  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=69.9

Q ss_pred             eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+.+++.|+||+.++..      .+.++||+|++||++||.+++||+||++|+|+|+|++++|++ +|++++.+
T Consensus        19 elr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~-dG~~r~~~   97 (264)
T 2fxq_A           19 DMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEK-DGEKKSEV   97 (264)
T ss_dssp             CCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC----------CCE
T ss_pred             eEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEe-CCEEEEEE
Confidence            35788889999999999988632      346899999999999999999999999999999999999999 99999999


Q ss_pred             EEEEeeEEeeecCC
Q 027559          103 KVVVEDFNYVRECG  116 (222)
Q Consensus       103 eVvV~el~Fv~~k~  116 (222)
                      +|+|++|+|++++.
T Consensus        98 ev~a~~i~~l~~~~  111 (264)
T 2fxq_A           98 QVRAEFIDPLEGRG  111 (264)
T ss_dssp             EEEEEEEEECCCC-
T ss_pred             EEEEEEEEECcCCc
Confidence            99999999998765

>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}

Probab=99.68  E-value=3.8e-17  Score=136.75  Aligned_cols=84  Identities=12%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             eeeeeccceEEeeeeecccee-------eceeeeeEEEEEechh-HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           30 LENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGkl-AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      +++.+  .+++.|+||++++.       ..++++||+|++||++ ||+|++||+||++|+|+|+|++++|+|++|++++.
T Consensus        37 lR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~VeGrL~tr~w~D~~g~k~~~  114 (164)
T 3k81_C           37 GFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFY  114 (164)
T ss_dssp             EESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECCEEEEECCCCSSCSCCCC
T ss_pred             EEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEEEEEEeeeEEcCCCCEEEE
Confidence            45666  78999999999531       1257999999999999 99999999999999999999999999999877664


Q ss_pred             E-EEEEe----eEEeeecC
Q 027559          102 Y-KVVVE----DFNYVREC  115 (222)
Q Consensus       102 ~-eVvV~----el~Fv~~k  115 (222)
                      + .|+|.    .+.+|+++
T Consensus       115 ~~~i~V~~~~g~l~~L~~~  133 (164)
T 3k81_C          115 FPYIQVQPPHGQVAVIHGD  133 (164)
T ss_dssp             EEEEEECTTTCCEEEECC-
T ss_pred             EEEEEEeCCCCEEEEecCC
Confidence            4 44555    79999865

>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3

Probab=99.68  E-value=1.2e-16  Score=143.64  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=72.1

Q ss_pred             eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++.+.+..++.|+||++++..      ...++||+|++||++||.|++ |+||++|+|+|+|++++|+|++|++++.+
T Consensus       143 elr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~~y~dkdG~~r~~~  221 (301)
T 1se8_A          143 EIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNEGWTDKDGNKRNST  221 (301)
T ss_dssp             EEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEEECC------CEEE
T ss_pred             EEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeeeeEECCCCcEEEEE
Confidence            36788888999999999988532      247899999999999999999 99999999999999999999999999999


Q ss_pred             EEEEeeEEeeecCCC
Q 027559          103 KVVVEDFNYVRECGQ  117 (222)
Q Consensus       103 eVvV~el~Fv~~k~~  117 (222)
                      +|+|++|+|++++..
T Consensus       222 ev~a~~i~~l~~k~~  236 (301)
T 1se8_A          222 RVEATRVEALARGAG  236 (301)
T ss_dssp             EEEEEEEEECCC---
T ss_pred             EEEEEEEEEeccCCC
Confidence            999999999987643

>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A

Probab=99.63  E-value=1.2e-15  Score=120.78  Aligned_cols=82  Identities=13%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK  103 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e  103 (222)
                      .++|.+.+.+++.|+||+.++.     ..+.++||+|++||++||.+ +||+||++|+|+|+|++++   ++|   +.++
T Consensus        15 elRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~trs---~~G---~kl~   87 (115)
T 3fhw_A           15 AMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPAR---KDS---VKVK   87 (115)
T ss_dssp             CCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEESS---TTC---SSEE
T ss_pred             ceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEECC---CCC---CEEE
Confidence            4688899999999999987542     23456679999999999998 9999999999999999986   678   5689


Q ss_pred             EEEeeEEeeecCCC
Q 027559          104 VVVEDFNYVRECGQ  117 (222)
Q Consensus       104 VvV~el~Fv~~k~~  117 (222)
                      |.|++|+|+++.++
T Consensus        88 l~a~~Ie~l~~~~~  101 (115)
T 3fhw_A           88 LHLQQARRIAGSMG  101 (115)
T ss_dssp             EEEEEEEECCCSCC
T ss_pred             EEEEEEEEcCCCCC
Confidence            99999999987643

>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}

Probab=99.62  E-value=1.4e-15  Score=134.85  Aligned_cols=83  Identities=12%  Similarity=0.234  Sum_probs=71.4

Q ss_pred             eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechh--HHHHHhhcCCCCeEEEEEEeeeccccCCCCceE
Q 027559           29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDM--AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLC   99 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGkl--AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~r   99 (222)
                      .+++++ +.+++.|+||++++..       .+.++||+|++||++  || +++||+||++|+|+|+|++++|+|++|+++
T Consensus       159 ElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGrL~tr~~~D~~G~kr  236 (257)
T 4dni_A          159 QSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGRLRLSPQLEPSCNKH  236 (257)
T ss_dssp             EEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEEEEEEEEECSSSSCE
T ss_pred             EEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEEEEeeeEEcCCCCEE
Confidence            467888 9999999999998632       238999999999999  99 888999999999999999999999999999


Q ss_pred             EEEEEE-Ee----eEEeee
Q 027559          100 LCYKVV-VE----DFNYVR  113 (222)
Q Consensus       100 s~~eVv-V~----el~Fv~  113 (222)
                      +.++|+ |.    +|.+|.
T Consensus       237 ~~~~vI~V~~~~g~v~~l~  255 (257)
T 4dni_A          237 FYFPYIQVQPPHGQVAVIH  255 (257)
T ss_dssp             EEEEEEEECTTTCEEEECC
T ss_pred             EEEEEEEEECCCCEEEEec
Confidence            998864 44    555554

>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}

Probab=99.52  E-value=5.6e-14  Score=108.87  Aligned_cols=77  Identities=12%  Similarity=0.011  Sum_probs=64.2

Q ss_pred             eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK  103 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e  103 (222)
                      .++|.+.+.+++.|+||+.++.     ..+.++||+|++||++|| +.+ |+||++|+|+|+|++++|   +|.   ...
T Consensus        21 elRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~rs~---~~~---~lv   92 (103)
T 3k8a_A           21 PIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQKSR---RSL---MPM   92 (103)
T ss_dssp             CCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEESSS---SCC---CEE
T ss_pred             ceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEECcc---CCc---cEE
Confidence            4688999999999999997653     223345699999999999 665 999999999999999999   333   578


Q ss_pred             EEEeeEEeee
Q 027559          104 VVVEDFNYVR  113 (222)
Q Consensus       104 VvV~el~Fv~  113 (222)
                      +.+++|++++
T Consensus        93 lhi~~i~~i~  102 (103)
T 3k8a_A           93 LRIQNIKEYK  102 (103)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEcC
Confidence            8999999985

>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}

Probab=99.42  E-value=5.9e-13  Score=109.81  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             eeeeccceEEeeeeeccce---eeceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEE
Q 027559           31 ENIELNECVTMLDILLLII---HHLQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVV  105 (222)
Q Consensus        31 ~~~~~~e~vt~~~iav~~r---~~~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVv  105 (222)
                      ++.. .+.++.|+||++..   .+..+++||+|.+|| ++||.+.+||+||++|+|+|||++++|+|++|+++|.+-++
T Consensus        59 ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i  136 (148)
T 3stb_C           59 GFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVI  136 (148)
T ss_dssp             EEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             cccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEcceeECCCCCEEeeccEE
Confidence            4443 56899999999774   345689999999995 99999999999999999999999999999999999988775

>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}

Probab=99.41  E-value=3.1e-13  Score=119.80  Aligned_cols=83  Identities=13%  Similarity=0.073  Sum_probs=67.7

Q ss_pred             eeeeeeccceEEeeeeeccce---eeceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559           29 KLENIELNECVTMLDILLLII---HHLQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV  104 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r---~~~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV  104 (222)
                      -++|.+.+. ++.+++++...   .+..+++||+|++|| ++||.|++||+||++|+|+|||++  |+++||++++.++|
T Consensus        43 ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~--~~~~dG~kr~~~ev  119 (257)
T 4dni_A           43 QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM--VPQYDGSMRKYYHY  119 (257)
T ss_dssp             EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE--EEEECSSSSSEEEE
T ss_pred             EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE--eECCCCCcEEEEEE
Confidence            467777662 44555555443   344568899999999 999999999999999999999999  78899999999999


Q ss_pred             EEeeEEeeec
Q 027559          105 VVEDFNYVRE  114 (222)
Q Consensus       105 vV~el~Fv~~  114 (222)
                      +|.++.-+.+
T Consensus       120 va~~v~~~~G  129 (257)
T 4dni_A          120 PVIQVHPGCG  129 (257)
T ss_dssp             EEEEECTTTC
T ss_pred             EEEEEEecCC
Confidence            9999877543

>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}

Probab=99.28  E-value=8.1e-12  Score=96.85  Aligned_cols=65  Identities=15%  Similarity=0.058  Sum_probs=52.1

Q ss_pred             eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCC
Q 027559           29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDK   94 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dk   94 (222)
                      .++|.+.+..++.|+||+.++.     ..+.++||+|++||++||.+++ ++||++|.|+|+|++++|.++
T Consensus        16 elRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~trs~~s~   85 (101)
T 3en2_A           16 VMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARKHRSSK   85 (101)
T ss_dssp             CCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEECC----
T ss_pred             cEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeCcCCCC
Confidence            4688899999999999987653     1234455999999999999997 689999999999999999643

>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C

Probab=96.35  E-value=0.011  Score=46.06  Aligned_cols=70  Identities=17%  Similarity=0.097  Sum_probs=45.9

Q ss_pred             eeeeeeec----cceEEeeeeeccceeeceeeeeEEEEEechhH--HHHHhhcCCCCeEEEEEEeeeccccCCCCceE
Q 027559           28 IKLENIEL----NECVTMLDILLLIIHHLQCLSSILLAVGGDMA--QLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLC   99 (222)
Q Consensus        28 ~~~~~~~~----~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklA--E~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~r   99 (222)
                      =.+..++.    .+.++.|++.+ +.+...+-++|.|-++|+.+  +.+-+.|+.|..|.|.|+|++..--|. +.++
T Consensus        10 G~V~DVQ~Gfl~~~~V~Qftl~~-d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~-~~kk   85 (105)
T 4dka_C           10 GRIADVQHGFLGAMTVTQYVLEV-DGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD-VSKR   85 (105)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE-CC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT-TTCS
T ss_pred             EEEEEeeecccccceEEEEEEEE-eCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc-ccce
Confidence            34555554    67888888766 44556777899999999998  889999999999999999998776543 4444

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=87.57  E-value=0.49  Score=35.39  Aligned_cols=34  Identities=12%  Similarity=0.035  Sum_probs=28.7

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccc
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSK   91 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~   91 (222)
                      -|.+++|++.|+.. +.|+.|+.|+|+|......|
T Consensus        55 ~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f   88 (115)
T 2k50_A           55 ELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF   88 (115)
T ss_dssp             EEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred             eEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence            68999999998865 67999999999998855445

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}

Probab=86.87  E-value=0.49  Score=35.83  Aligned_cols=47  Identities=13%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE  114 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~  114 (222)
                      -|++++|++.|+.   .+++||.|.|.|+.+...    .|.    +++.+.+-.-|..
T Consensus        53 ~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~----~g~----~eL~~g~~~~i~~   99 (105)
T 3dm3_A           53 SIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY----YGG----LECTANYVEILKK   99 (105)
T ss_dssp             EEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT----TSS----EEEEEEEEEEEEC
T ss_pred             cEEEEEECccccc---ccCCCCEEEEEEEEEEcc----CCC----EEEEeCCceEEEe
Confidence            4899999999987   799999999999887642    232    4666666555543

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A

Probab=86.24  E-value=0.55  Score=34.76  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             eeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeee
Q 027559           55 LSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR  113 (222)
Q Consensus        55 t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~  113 (222)
                      |--|.+++|++.|+.   -++.||.|.|.|+.+..     .|    .+++.+..-.-|+
T Consensus        48 TG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~-----~~----~~el~~g~~~~i~   94 (97)
T 3e0e_A           48 TGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG-----YS----GLEISVDNIGIIE   94 (97)
T ss_dssp             TEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----------CEEEEEEEEEEEE
T ss_pred             CCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc-----CC----eEEEEECCCcEEE
Confidence            346899999999987   69999999999987543     12    4677776655554

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=81.73  E-value=1.1  Score=33.94  Aligned_cols=29  Identities=21%  Similarity=0.219  Sum_probs=27.4

Q ss_pred             eEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559           57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQ   85 (222)
Q Consensus        57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGr   85 (222)
                      -|.+++|+++|+.....|+.|+.++|+|-
T Consensus        52 ~I~at~~~~~~~~f~~~l~eG~vy~Is~~   80 (114)
T 1ynx_A           52 EIRATAFNDFATKFNEILQEGKVYYVSKA   80 (114)
T ss_dssp             EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred             eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence            78999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1v1qa_	111	b.40.4.3 (A:) Primosomal replication protein N, Pr	0.001
d1ue1a_	118	b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium	0.002

>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Length = 111

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 64  GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV 112
           G   Q     +     I V G +  +   +   K+     +  E    +
Sbjct: 60  GHENQAITHSITVGSRITVQGFISCHKAKNGLSKM----VLHAEQIELI 104

>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 64  GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFN 110
            + A+   + L     + V+G+L   S   + G+     +V V++  
Sbjct: 59  REAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIG 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1qvca_	145	ssDNA-binding protein {Escherichia coli [TaxId: 56	99.79
d3ulla_	115	ssDNA-binding protein {Human (Homo sapiens), mitoc	99.78
d1ue1a_	118	ssDNA-binding protein {Mycobacterium tuberculosis	99.76
d1se8a_	231	ssDNA-binding protein {Deinococcus radiodurans [Ta	99.71
d1se8a_	231	ssDNA-binding protein {Deinococcus radiodurans [Ta	99.7
d1v1qa_	111	Primosomal replication protein N, PriB {Escherichi	99.58
d1eova1	134	Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S	85.18
d1b8aa1	103	Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ	82.58
d1jmca1	116	Replication protein A 70 KDa subunit (RPA70) {Huma	81.1

>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.3e-19  Score=142.98  Aligned_cols=88  Identities=15%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             eeeeeeccceEEeeeeecccee-------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .++++..+.+++.|++|++++.       ....++||+|++||++||.+++||+|||+|+|+|+|.++.|+|++|++++.
T Consensus        19 e~r~~~~G~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~~Ae~~~~~l~KG~~V~V~G~l~~~~~~~kdG~~r~~   98 (145)
T d1qvca_          19 EVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT   98 (145)
T ss_dssp             EEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEE
T ss_pred             EEEECCCCCEEEEEEEEecccccccccccccccceEEeeEEecchhhhHhhhcccCCEEEEEEEEEEeeeECCCCCEEEE
Confidence            4688888899999999988752       245899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEe---eEEeeecCC
Q 027559          102 YKVVVE---DFNYVRECG  116 (222)
Q Consensus       102 ~eVvV~---el~Fv~~k~  116 (222)
                      ++|+|+   .|+|+.++.
T Consensus        99 ~ei~~~~~~~l~~l~~r~  116 (145)
T d1qvca_          99 TEVVVNVGGTMQMLGGRQ  116 (145)
T ss_dssp             EEEECTTCEEEECCCCSC
T ss_pred             EEEEEecCCcEEECcCcc
Confidence            999997   666666554

>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Human (Homo sapiens), mitochondria [TaxId: 9606]

Probab=99.78  E-value=1.9e-19  Score=137.87  Aligned_cols=83  Identities=16%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             eeeeeccceEEeeeeecccee------------eceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCC
Q 027559           30 LENIELNECVTMLDILLLIIH------------HLQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNG   96 (222)
Q Consensus        30 ~~~~~~~e~vt~~~iav~~r~------------~~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdG   96 (222)
                      +++++.+.+++.|++|++++.            ..+.+.||+|++||+ +|+.|.+||+|||+|+|+|+|++++|+|++|
T Consensus        20 ~r~t~~G~~v~~f~vAv~~~~~~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG~~V~V~Grl~~~~~~dkdG   99 (115)
T d3ulla_          20 LRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN   99 (115)
T ss_dssp             EECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSS
T ss_pred             EEEeCCCCEEEEEEEEcccccccccccccccccceeeeeeeeeeeeecccchhhhhhccCCCEEEEEEEEeeeeEECCCC
Confidence            577788899999999987642            124689999999997 7999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeeEEee
Q 027559           97 KLCLCYKVVVEDFNYV  112 (222)
Q Consensus        97 q~rs~~eVvV~el~Fv  112 (222)
                      ++++.++|+|++|.||
T Consensus       100 ~~r~~~~v~a~~i~~L  115 (115)
T d3ulla_         100 VRRQATTIIADNIIFL  115 (115)
T ss_dssp             EECCCEEEEEEEEECC
T ss_pred             CEEEEEEEEEEEEEeC
Confidence            9999999999999996

>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=1.5e-18  Score=133.50  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             eeeeeeccceEEeeeeecccee--------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559           29 KLENIELNECVTMLDILLLIIH--------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL  100 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~--------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs  100 (222)
                      .+++++.+..++.|+||++++.        ....++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++
T Consensus        16 e~r~~~~G~~v~~f~lA~~~~~~~~~~~~~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~~dG~~r~   95 (118)
T d1ue1a_          16 ELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRT   95 (118)
T ss_dssp             EEEECTTSCEEEEEEEEECCCCCC-----CCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSSCEE
T ss_pred             EEEECCCCCEEEEEEEEecccccccCCCcccccceeeEEEEeChHHHHHHHHhccCCCEEEEEeEeeeceEECCCCCEEE
Confidence            4678888899999999997642        23468999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeEEe
Q 027559          101 CYKVVVEDFNY  111 (222)
Q Consensus       101 ~~eVvV~el~F  111 (222)
                      .++|+|++|..
T Consensus        96 ~~~v~a~~vg~  106 (118)
T d1ue1a_          96 VIEVEVDEIGP  106 (118)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEecc
Confidence            99999999843

>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.71  E-value=1.5e-17  Score=140.86  Aligned_cols=91  Identities=13%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHH-hhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQ-KHLKPNDFIYVTGQLHSYSKVDKNGKLCLC  101 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~a-qyLkKGD~V~VsGrL~sr~~~dkdGq~rs~  101 (222)
                      .+++.+.+.+++.|++|++++.      ....++||+|++||++||.++ +||+||++|+|+|+|++++|+|+||++++.
T Consensus        17 e~r~t~~G~~~~~f~lA~~~~~~~~~g~~~~~t~~~~v~~~g~~Ae~~~~~~l~KG~~V~V~G~l~~~~~~~~dG~~r~~   96 (231)
T d1se8a_          17 ELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSA   96 (231)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEE
T ss_pred             EEEECCCCCEEEEEEEEECCcEECCCCCEEeeeeeeeEEEeCchhhhhhhhccCCCCEEEEEEEEEeeeeECCCCCEEEE
Confidence            4677788899999999988752      345689999999999999765 689999999999999999999999999999


Q ss_pred             EEEEEeeEEeeecCCCCc
Q 027559          102 YKVVVEDFNYVRECGQGL  119 (222)
Q Consensus       102 ~eVvV~el~Fv~~k~~~~  119 (222)
                      ++|+|++|+||++++...
T Consensus        97 ~~i~a~~v~~l~~~~~~~  114 (231)
T d1se8a_          97 VNVKALRMEQLGTQPELI  114 (231)
T ss_dssp             EEEEEEEEEECSSCCCEE
T ss_pred             EEEEEEEEEEccCCcccc
Confidence            999999999999876433

>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.70  E-value=1.8e-17  Score=140.29  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY  102 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~  102 (222)
                      .+++++.+.+++.|++|++++.      ..+.++||+|++||++||.+ +||+|||+|+|+|+|++++|+|+||++++.+
T Consensus       141 e~r~t~~G~~~~~f~va~~~~~~~~~g~~~~~t~~~~v~~~g~~Ae~~-~~l~KG~~V~V~G~l~~~~~~~kdG~~r~~~  219 (231)
T d1se8a_         141 EIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENM-KELRKGDPVMIMGRLVNEGWTDKDGNKRNST  219 (231)
T ss_dssp             EEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEEEECC------CEEE
T ss_pred             EEEECCCCCEEEEEEEEECCCeECCCCceeeeeEEEEeEecCcHHHHh-hhCCCCCEEEEEEEeEeceEECCCCCEEEEE
Confidence            4677888899999999997652      23578999999999999998 5899999999999999999999999999999


Q ss_pred             EEEEeeEEeeec
Q 027559          103 KVVVEDFNYVRE  114 (222)
Q Consensus       103 eVvV~el~Fv~~  114 (222)
                      +|+|++|+||++
T Consensus       220 ~i~a~~v~~L~r  231 (231)
T d1se8a_         220 RVEATRVEALAR  231 (231)
T ss_dssp             EEEEEEEEECCC
T ss_pred             EEEEEEEEEccC
Confidence            999999999963

>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.7e-15  Score=115.13  Aligned_cols=84  Identities=12%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559           29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK  103 (222)
Q Consensus        29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e  103 (222)
                      .+++.+.+..++.|.+|+....     ..+.++||+|++||++||.+++||+||++|+|+|+|.+++|.+  |+.+  +.
T Consensus        20 elr~T~~G~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~Ae~~~~~l~kG~~v~v~G~L~~~~~~~--~~~r--~v   95 (111)
T d1v1qa_          20 LRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKN--GLSK--MV   95 (111)
T ss_dssp             EEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTT--TSCE--EE
T ss_pred             ceEECCCCCEEEEEEEEeccEEecccceEEEEEEEEEEEeCHHHHHHHHHhcCCCEEEEEEEEEEecccC--CCCE--EE
Confidence            4688899999999999876542     4456789999999999999999999999999999999999964  4444  45


Q ss_pred             EEEeeEEeeecCC
Q 027559          104 VVVEDFNYVRECG  116 (222)
Q Consensus       104 VvV~el~Fv~~k~  116 (222)
                      |.|++|+||++..
T Consensus        96 ~~a~~ie~l~s~~  108 (111)
T d1v1qa_          96 LHAEQIELIDSVD  108 (111)
T ss_dssp             EEEEEEEETTSCS
T ss_pred             EEEEEEEEecCCC
Confidence            8899999998754

>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.18  E-value=1.7  Score=31.98  Aligned_cols=46  Identities=9%  Similarity=0.110  Sum_probs=35.3

Q ss_pred             HHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecCC
Q 027559           70 CQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECG  116 (222)
Q Consensus        70 ~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k~  116 (222)
                      .+++|..|+.|.|.|.+.-..-.. .+...-.+||.|++++.|....
T Consensus        86 ~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~~~Ei~v~~i~vls~a~  131 (134)
T d1eova1          86 WAGSLNLESIVLVRGIVKKVDEPI-KSATVQNLEIHITKIYTISETP  131 (134)
T ss_dssp             HHTTCCTTCEEEEEEEEEECSSCC-TTSSEEEEEEEEEEEEEEECCC
T ss_pred             HHhcCCCCCEEEEEEEEEeCCccC-CCCCCCcEEEEEEEEEEEeCCC
Confidence            357899999999999997654332 3334457999999999997654

>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=82.58  E-value=4.1  Score=28.57  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=38.1

Q ss_pred             eEEEEEechhH----HHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559           57 SILLAVGGDMA----QLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC  115 (222)
Q Consensus        57 wI~Vv~WGklA----E~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k  115 (222)
                      .|+|++-.+..    -..++.|+.|+.|.|+|.+..+. ..+.|     +||.|++++.+...
T Consensus        45 ~iQ~v~~~~~~~~~~~~~~~~l~~es~v~V~G~v~~~~-~~~~~-----iEi~v~~i~ils~a  101 (103)
T d1b8aa1          45 IVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP-KAKLG-----FEILPEKIVVLNRA  101 (103)
T ss_dssp             EEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT-TSTTS-----EEEEEEEEEEEECB
T ss_pred             eeeEEEeccccchhhhhHHhhCCcceEEEEEEEEEECC-CCCcc-----EEEEeeEEEEEEec
Confidence            47888865431    23456799999999999997643 22322     89999999998653

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.68  Score=33.28  Aligned_cols=28  Identities=11%  Similarity=0.055  Sum_probs=26.6

Q ss_pred             EEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559           58 ILLAVGGDMAQLCQKHLKPNDFIYVTGQ   85 (222)
Q Consensus        58 I~Vv~WGklAE~~aqyLkKGD~V~VsGr   85 (222)
                      |.+++|+++|+.....|+.|+-++|+|-
T Consensus        51 I~~t~~~~~~~~f~~~l~~G~vy~i~~~   78 (116)
T d1jmca1          51 IRATAFNEQVDKFFPLIEVNKVYYFSKG   78 (116)
T ss_dssp             EEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred             EEEEEchhhhhhhHhhcccCCEEEEcce
Confidence            8999999999999999999999999983