Citrus Sinensis ID: 027563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHcccEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccccccccEEEEcccccccccHHEcccccccccccccccccEEEEEEEccccEccHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEEEccccccccHHHHHHHHHHHHHHccEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHEEHcccc
Coil and Loop (DISEMBL)
maakllssssspptpqllcsfslhsklkfkdstQQQSwlrqapnppsspttraKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKtfvgegeskkapnqvAGEIFSFftrnnfvvtdrgevitfegmmvpsrgqaAFLTFCTCISLASVALVLTitypdignnwFWITILSPLA
Flexible Loop (DISEMBL)
maakllssssspptpqLLCSFSLHSKLKFKDSTQQqswlrqapnppssptTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTfvgegeskkapnqVAGEIfsfftrnnfvvTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Low Complexity Region (SEG)
MAAKllssssspptpqllcsFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRakkkqlavavavqEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Disordered region (IsUnstruct)
*********************************************************LAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGE********QVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITIL****
Disordered Region (DISOPRED)
**************PQLLCSFSLHSKLKFKDSTQQQSWLR*************************EPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFV************AGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Disordered Region (DISEMBL)
**************PQLLCSFSLHSKLKFK*****************************VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Disordered Region (DISPRO)
*********SSPPTPQLLCSFSLHSKLKFKDS*Q*QSW****************KKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
225451623	267	PREDICTED: uncharacterized protein LOC10	0.833	0.692	0.686	2e-70
255543529	266	conserved hypothetical protein [Ricinus	0.900	0.751	0.654	6e-69
358249262	268	uncharacterized protein LOC100807450 [Gl	0.891	0.738	0.668	1e-67
356498603	268	PREDICTED: uncharacterized protein LOC10	0.720	0.597	0.766	2e-65
224056809	204	predicted protein [Populus trichocarpa]	0.626	0.681	0.856	5e-65
147802224	190	hypothetical protein VITISV_029913 [Viti	0.585	0.684	0.854	5e-61
449452032	255	PREDICTED: uncharacterized protein LOC10	0.869	0.756	0.609	7e-61
357508449	259	hypothetical protein MTR_7g084160 [Medic	0.612	0.525	0.833	1e-59
297814902	267	hypothetical protein ARALYDRAFT_484443 [	0.914	0.760	0.587	9e-59
18405058	267	cofactor assembly of complex C [Arabidop	0.914	0.760	0.582	1e-58

>gi|225451623|ref|XP_002276522.1| PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera] gi|296082263|emb|CBI21268.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 159/198 (80%), Gaps = 13/198 (6%)

Query: 28  KFKDST---QQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQ 84
           KF+ S    Q Q WLR+ P P        + K+L V V++ +P+ +S++AL+ H++   Q
Sbjct: 20  KFRTSDFTLQHQPWLRRTPTP-------TRPKRLVVQVSLHDPI-SSSTALLHHLHT-HQ 70

Query: 85  NRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKA 144
              SL+ LAEST GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+GEGE K  
Sbjct: 71  TPYSLFELAEST-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEGKNK 129

Query: 145 PNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTIT 204
           PN +AGEI SFF+RNNFVV+DRGE ITFEGMMVPSRGQAA LTFCTCISLASV LVLTIT
Sbjct: 130 PNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLASVGLVLTIT 189

Query: 205 YPDIGNNWFWITILSPLA 222
           +PD+GNNWFW+TILSPLA
Sbjct: 190 FPDVGNNWFWLTILSPLA 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543529|ref|XP_002512827.1| conserved hypothetical protein [Ricinus communis] gi|223547838|gb|EEF49330.1| conserved hypothetical protein [Ricinus communis]

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 164/220 (74%), Gaps = 20/220 (9%)

Query: 3   AKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAV 62
           AKLL S    P P    S SL SKL  K   +   W    P P  + T     +Q+   V
Sbjct: 6   AKLLLS----PNP---LSISLPSKLSCK---KHHLW----PGPGQARTPTTPNRQVVRVV 51

Query: 63  AVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLI 122
           ++QE +L+S++ L+E +++      S++ +AES  GYS ASYYTSLGLFVISVPGLWSLI
Sbjct: 52  SLQEHVLSSSAILVEQLHH-----DSMFSVAESM-GYSSASYYTSLGLFVISVPGLWSLI 105

Query: 123 KRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQ 182
           KRSVKSKIVQKTF+GEGE +KAPN VAGEI SFFTRNNFVVTDRGE ITFEGMM+PSRGQ
Sbjct: 106 KRSVKSKIVQKTFIGEGEGRKAPNHVAGEILSFFTRNNFVVTDRGETITFEGMMIPSRGQ 165

Query: 183 AAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
           AA LTFCTCISLASVALVLTIT PD GNNWFWITILSPLA
Sbjct: 166 AALLTFCTCISLASVALVLTITLPDFGNNWFWITILSPLA 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249262|ref|NP_001239764.1| uncharacterized protein LOC100807450 [Glycine max] gi|255637962|gb|ACU19297.1| unknown [Glycine max]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/211 (66%), Positives = 154/211 (72%), Gaps = 13/211 (6%)

Query: 12  PPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLAS 71
           PP P   CS  + +KL  +       +     +P     TR  KK +A      +PL++ 
Sbjct: 10  PPHPHPFCSLPIPTKLGIRPF-----FTFHQVHPLVVQHTRKPKKHVAHVSLHDDPLVSC 64

Query: 72  TSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV 131
                  I+   QN   L LLAES AGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV
Sbjct: 65  I------IHQQQQNPYHLVLLAES-AGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV 117

Query: 132 QKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTC 191
           QKTF+GEGE KKAPNQVAGEI SFFTRNNF VTDRGE ITFEGMMVPSRGQAA LTFCTC
Sbjct: 118 QKTFIGEGE-KKAPNQVAGEILSFFTRNNFAVTDRGETITFEGMMVPSRGQAALLTFCTC 176

Query: 192 ISLASVALVLTITYPDIGNNWFWITILSPLA 222
           ISLASVALVLTIT PD+GNNWFWIT+LSPLA
Sbjct: 177 ISLASVALVLTITVPDVGNNWFWITLLSPLA 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498603|ref|XP_003518139.1| PREDICTED: uncharacterized protein LOC100803392 [Glycine max]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 139/171 (81%), Gaps = 11/171 (6%)

Query: 52  RAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLF 111
           R  KK +A      +PL++ T         + QN   L LLAES AGYSLASYYTSLGLF
Sbjct: 48  RKSKKHVAHVSLHDDPLVSYT---------IQQNPYHLVLLAES-AGYSLASYYTSLGLF 97

Query: 112 VISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVIT 171
           VISVPGLWSLIKRSVKSKIVQKTF+GEGE KKAPNQ AGEI SFFTRNNF VTDRGE IT
Sbjct: 98  VISVPGLWSLIKRSVKSKIVQKTFIGEGE-KKAPNQAAGEILSFFTRNNFTVTDRGETIT 156

Query: 172 FEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
           FEGMMVPSRGQAA LTFCTCISLASVALVLTIT+PD+GNNWFWITI SPLA
Sbjct: 157 FEGMMVPSRGQAALLTFCTCISLASVALVLTITFPDVGNNWFWITISSPLA 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056809|ref|XP_002299034.1| predicted protein [Populus trichocarpa] gi|222846292|gb|EEE83839.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/139 (85%), Positives = 127/139 (91%)

Query: 84  QNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKK 143
           QN++S++++AES A YSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTF GEGE KK
Sbjct: 5   QNQESMFVVAESAASYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFTGEGEGKK 64

Query: 144 APNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTI 203
            P QVAGEI SFFTRNNF VT RGE ITFEGMMVP+RGQAA LTFCTCISLASVALVLTI
Sbjct: 65  EPAQVAGEILSFFTRNNFAVTGRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTI 124

Query: 204 TYPDIGNNWFWITILSPLA 222
           T+PD GNNWFWITILSPLA
Sbjct: 125 TFPDFGNNWFWITILSPLA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802224|emb|CAN68272.1| hypothetical protein VITISV_029913 [Vitis vinifera]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 121/131 (92%), Gaps = 1/131 (0%)

Query: 92  LAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGE 151
           + EST GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+GEGE K  PN +AGE
Sbjct: 1   MKEST-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEGKNKPNHMAGE 59

Query: 152 IFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNN 211
           I SFF+RNNFVV+DRGE ITFEGMMVPSRGQAA LTFCTCISLASV LVLTIT+PD+GNN
Sbjct: 60  ILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLASVGLVLTITFPDVGNN 119

Query: 212 WFWITILSPLA 222
           WFW+TILSPLA
Sbjct: 120 WFWLTILSPLA 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452032|ref|XP_004143764.1| PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] gi|449516926|ref|XP_004165497.1| PREDICTED: uncharacterized protein LOC101227453 [Cucumis sativus]

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 149/223 (66%), Gaps = 30/223 (13%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPP-SSPTTRAKKKQLA 59
           MAAKLL SS   P P    SFS                +  +P P  + P T  K  +  
Sbjct: 1   MAAKLLPSSHLYPLPS--NSFSA---------------IDLSPRPCFARPRTHFKPHRSV 43

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
                 EPL+A           L  +  S +LLAES  GYS+ASYYTSLGLFVISVPGLW
Sbjct: 44  TVRVSAEPLVA-----------LQDHNNSAFLLAESV-GYSMASYYTSLGLFVISVPGLW 91

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSK+V+KTFV E  SKK PNQ+AGEI SFFTRNNF VTDRGE ITFEG MVPS
Sbjct: 92  SLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPS 151

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
           RGQAA LTFCTCISLASV LVLTITYPD GNNWFW++ LSPLA
Sbjct: 152 RGQAALLTFCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLA 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508449|ref|XP_003624513.1| hypothetical protein MTR_7g084160 [Medicago truncatula] gi|355499528|gb|AES80731.1| hypothetical protein MTR_7g084160 [Medicago truncatula]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 124/138 (89%), Gaps = 2/138 (1%)

Query: 85  NRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKA 144
           N  SL+LL E+T GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+ EG   KA
Sbjct: 63  NPNSLFLLTETT-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEG-GNKA 120

Query: 145 PNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTIT 204
           P+QVAGE+ SFFTRNNF V DRGE ITFEG+MVPSRGQAA LTFCTCISLASV+LVLTIT
Sbjct: 121 PSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTIT 180

Query: 205 YPDIGNNWFWITILSPLA 222
            PDIGNNWFW+TILSPLA
Sbjct: 181 VPDIGNNWFWLTILSPLA 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814902|ref|XP_002875334.1| hypothetical protein ARALYDRAFT_484443 [Arabidopsis lyrata subsp. lyrata] gi|297321172|gb|EFH51593.1| hypothetical protein ARALYDRAFT_484443 [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 149/223 (66%), Gaps = 20/223 (8%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKD-STQQQSWLRQAPNPPSSPTTRAKKKQLA 59
           MA KL+S       P L C +    ++  K    +++ W+    N  S           A
Sbjct: 1   MATKLIS-------PPLSCPWVTSREVSIKGLPRRRREWMVTKRNRVS-----------A 42

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
           V     EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLW
Sbjct: 43  VTAMFVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLW 102

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSKIV+KTFV   E KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPS
Sbjct: 103 SLIKRSVKSKIVRKTFV-VNEVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPS 161

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
           RGQAA LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLA
Sbjct: 162 RGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLA 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405058|ref|NP_566797.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|11994304|dbj|BAB01734.1| unnamed protein product [Arabidopsis thaliana] gi|21592738|gb|AAM64687.1| unknown [Arabidopsis thaliana] gi|22655152|gb|AAM98166.1| expressed protein [Arabidopsis thaliana] gi|30023738|gb|AAP13402.1| At3g26710 [Arabidopsis thaliana] gi|110742756|dbj|BAE99286.1| hypothetical protein [Arabidopsis thaliana] gi|332643681|gb|AEE77202.1| cofactor assembly of complex C [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 150/223 (67%), Gaps = 20/223 (8%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKD-STQQQSWLRQAPNPPSSPTTRAKKKQLA 59
           MA KL+S       P L C +    ++  K    +++ W+    N  S           A
Sbjct: 1   MATKLIS-------PPLSCPWVTSREVIIKGLPRRRREWMVTKRNRVS-----------A 42

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
           V   + EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLW
Sbjct: 43  VTAMIVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLW 102

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSKIV+KTFV   + KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPS
Sbjct: 103 SLIKRSVKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPS 161

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
           RGQAA LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLA
Sbjct: 162 RGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLA 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2090807	267	CCB1 "AT3G26710" [Arabidopsis	0.702	0.584	0.738	7.8e-55

TAIR|locus:2090807 CCB1 "AT3G26710" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/157 (73%), Positives = 127/157 (80%)

Query:    66 EPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRS 125
             EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLWSLIKRS
Sbjct:    49 EPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRS 108

Query:   126 VKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAF 185
             VKSKIV+KTFV   + KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPSRGQAA 
Sbjct:   109 VKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAAL 167

Query:   186 LTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
             LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLA
Sbjct:   168 LTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLA 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       193   0.00098  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  161 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.85u 0.12s 17.97t   Elapsed:  00:00:02
  Total cpu time:  17.85u 0.12s 17.97t   Elapsed:  00:00:02
  Start:  Tue May 21 00:49:47 2013   End:  Tue May 21 00:49:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam12046	173	pfam12046, DUF3529, Protein of unknown function (D	2e-52

>gnl|CDD|152481 pfam12046, DUF3529, Protein of unknown function (DUF3529)

 Score =  166 bits (423), Expect = 2e-52
 Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 100 SLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRN 159
             AS Y++L L ++   GL+  ++ SVK +  + TF+    S + P +V G +  +F R 
Sbjct: 1   MQASLYSTLLLTLLLAIGLFFFLRASVKDRTTRVTFI----SPRPPLEVLGGLKEYFERR 56

Query: 160 NFVVTD---RGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWIT 216
            + V      GEVITFEG++ PSR  A FLT    + LA + LVL+   P +G     + 
Sbjct: 57  GYRVAGGDAEGEVITFEGIVAPSRFLAVFLTLLAAVGLACLGLVLSQLVPQLGWWPLLLV 116

Query: 217 ILSPLA 222
           +LSPLA
Sbjct: 117 LLSPLA 122

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF12046	173	DUF3529: Protein of unknown function (DUF3529); In	100.0
PRK11198	147	LysM domain/BON superfamily protein; Provisional	94.84
PF05140	464	ResB: ResB-like family ; InterPro: IPR007816 This	87.5
COG5375	216	Uncharacterized protein conserved in bacteria [Fun	81.53

>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised

Probab=100.00  E-value=2.3e-52  Score=352.11  Aligned_cols=118  Identities=42%  Similarity=0.649  Sum_probs=115.5

Q ss_pred             hhhHHHHHHHHHHHhhhHhhhhhhccccceeeeEEEeecCCCCChhHHHHHHHHHhhhcCeeeec---CCeEEEEEEeec
Q 027563          101 LASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTD---RGEVITFEGMMV  177 (222)
Q Consensus       101 ~aSyySTLlLTLLlaiGL~FFIRAS~KDRieqrT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~---~~evITFEG~V~  177 (222)
                      .++|||||+||+|++||||||||||+||||+++|+++++    |+++++++|++||++|||+|++   ++|+|||||+|+
T Consensus         2 ~~~~~STl~LtlLl~iGL~ffiraS~KdRt~~~~~~s~~----p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~   77 (173)
T PF12046_consen    2 TASLYSTLLLTLLLAIGLFFFIRASVKDRTEQVTFESPQ----PPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVA   77 (173)
T ss_pred             CchhhHHHHHHHHHHhHHHHHHHHhccccEEEEEEEcCC----CHHHHHHHHHHHHHhcCceecccCccccEEEEEEEec
Confidence            478999999999999999999999999999999999999    9999999999999999999999   679999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHhccCC
Q 027563          178 PSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA  222 (222)
Q Consensus       178 pS~fLAiFLTfLaaiGl~CLgLVLsil~P~lG~~~l~L~LLSPLA  222 (222)
                      ||+|||+|||+|+++|++|+||||+|++|++||||++|++|||+|
T Consensus        78 pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlA  122 (173)
T PF12046_consen   78 PSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLA  122 (173)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=94.84  E-value=0.04  Score=44.89  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             hhHhhhhhhccccceeeeEEEeecCCCCChhHHHHHHHHHhhhcCeeeec-----CCeEEEEEEeecC
Q 027563          116 PGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTD-----RGEVITFEGMMVP  178 (222)
Q Consensus       116 iGL~FFIRAS~KDRieqrT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~-----~~evITFEG~V~p  178 (222)
                      .|||+|||-+-|.      +-....-+...+++.+.|.+.+++.|+...+     .|.++|+.|.|..
T Consensus         1 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~s   62 (147)
T PRK11198          1 MGLFSFVKEAGEK------LFDAVTAQADNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAAS   62 (147)
T ss_pred             CcHHHHHHHHHHH------hcCCCCcccchHHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeCC
Confidence            3999999999885      1111111234688889999999999997665     7799999999974

>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []

Probab=87.50  E-value=8.7  Score=36.22  Aligned_cols=26  Identities=8%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CCChhHHHHHHHHHhhhcCeeeecCC
Q 027563          142 KKAPNQVAGEIFSFFTRNNFVVTDRG  167 (222)
Q Consensus       142 ~~p~~evl~~L~~yF~~R~Y~V~~~~  167 (222)
                      +.+++++++.+.+.|++++|+|...+
T Consensus       106 ~~~~~~~~~~~~~~L~~~gyrv~~~~  131 (464)
T PF05140_consen  106 PGDPEEALERLAALLKKKGYRVRRQE  131 (464)
T ss_pred             CCChHHHHHHHHHHHHhCCcEEEEec
Confidence            35999999999999999999998854

Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.

>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.53  E-value=0.93  Score=40.76  Aligned_cols=22  Identities=41%  Similarity=0.788  Sum_probs=19.2

Q ss_pred             hhcCeeeecCCeEEEEEEeecC
Q 027563          157 TRNNFVVTDRGEVITFEGMMVP  178 (222)
Q Consensus       157 ~~R~Y~V~~~~evITFEG~V~p  178 (222)
                      ..-+|+|.|.|++|+|||+|+.
T Consensus       188 ~ads~~v~D~G~iivF~g~Vr~  209 (216)
T COG5375         188 TADSYSVTDKGKIIVFEGNVRT  209 (216)
T ss_pred             EeeeeEeecCCcEEEEecceEE
Confidence            3568999999999999999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00