Citrus Sinensis ID: 027577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Secondary Structure (PSIPRED)
ccHHHHHHccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHcccEEcccHHHHHHcccEEEEcccccHHHcccccHHHHHccccccEEEEccccccccHHHHHHHHHHcccEEEEccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHccHHHHHHHHHcccccHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHccEEEEEccccccHHHHHHcccEEcccHHHHHHHccEEEEcccccccccccEcccHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHHHccccEccccccHHHcHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MRILILVRnflpghhqviSGEWNVAGVAYRaydlegktvgtvgcgrIGKLLLQRlkpfncnllyhdrvkmdpqleketgakfeedldtmlpkcdivvvntpltektrgmfdKDRIAKMKKGVLIVNNARGAIMDTQAVVDACssghiagysgdvwnpqpapkdhpwrympnqamtphvsgttIDLRYAAGVKDMLDryfkgedfpvqnYIVKAgelapqyr
Flexible Loop (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFeedldtmlpkcdivvvntpltektrgmfdkdriakMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKgedfpvqnYIVKAgelapqyr
Low Complexity Region (SEG)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered region (IsUnstruct)
**ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM***********FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP*******PWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISOPRED)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAG*******
Disordered Region (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Disordered Region (DISPRO)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL***Y*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q07511	381	Formate dehydrogenase, mi	N/A	no	1.0	0.580	0.878	1e-117
Q9SXP2	376	Formate dehydrogenase 1,	yes	no	1.0	0.587	0.852	1e-115
Q67U69	378	Formate dehydrogenase 2,	no	no	1.0	0.584	0.843	1e-114
Q9ZRI8	377	Formate dehydrogenase, mi	N/A	no	1.0	0.586	0.843	1e-114
Q9S7E4	384	Formate dehydrogenase, mi	yes	no	1.0	0.575	0.820	1e-110
Q03134	365	Probable formate dehydrog	yes	no	0.990	0.6	0.526	5e-63
O13437	364	Formate dehydrogenase OS=	N/A	no	0.972	0.590	0.486	2e-56
Q07103	375	Formate dehydrogenase OS=	N/A	no	0.990	0.584	0.508	6e-55
P33160	401	Formate dehydrogenase OS=	N/A	no	0.981	0.541	0.474	6e-54
P33677	362	Formate dehydrogenase OS=	N/A	no	0.972	0.593	0.450	7e-52

>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 210/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Involved in formate-dependent oxygen uptake coupled to ATP synthesis.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 2

>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 209/223 (93%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct: 334 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/223 (84%), Positives = 208/223 (93%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 156 MRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKK
Sbjct: 216 NLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKK 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SG
Sbjct: 276 GVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSG 335

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct: 336 TTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/223 (84%), Positives = 209/223 (93%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVGTVG GR G+LLLQRLKPFNC
Sbjct: 155 MRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNC 214

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKK
Sbjct: 215 NLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKK 274

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 275 GVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 334

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct: 335 TTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9S7E4|FDH_ARATH Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 342 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q03134|FDH_EMENI Probable formate dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aciA PE=2 SV=3

 Score =  240 bits (613), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 160/228 (70%), Gaps = 9/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
            G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct: 250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 219
            PH+SGT+ID  +RYA G K +LD YF G  D+  Q+ IV  G+ A +
Sbjct: 310 VPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYATK 357

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|O13437|FDH_CANBO Formate dehydrogenase OS=Candida boidinii GN=FDH1 PE=1 SV=1

 Score =  218 bits (555), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 152/224 (67%), Gaps = 9/224 (4%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
           TPH SGTT+D   RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 309 TPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGE 352

NAD(+)-dependent enzyme which catalyzes the final step in the menthanol oxidation pathway. Involved in detoxification of formate.

Candida boidinii (taxid: 5477)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q07103|FDH_NEUCR Formate dehydrogenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fdh PE=2 SV=1

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 156/228 (68%), Gaps = 9/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM
Sbjct: 250 KGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAM 309

Query: 175 TPHVSGTTIDL--RYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 219
            PH+SGT++D   RYAAG K +++ Y  G+ D+  ++ IV  G+ A +
Sbjct: 310 VPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYATK 357

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33160|FDH_PSESR Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3

 Score =  210 bits (535), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336

Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           TT+    RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

Pseudomonas sp. (strain 101) (taxid: 33067)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33677|FDH_PICAN Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2

 Score =  203 bits (517), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 145/224 (64%), Gaps = 9/224 (4%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+ISG WNVA +A  ++D+EGK + T+G GRIG  +L+RL  FN 
Sbjct: 129 MTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+ + + +   K
Sbjct: 189 KELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAM 308

Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
           TPH SG+ ID  +RYA G K++L+ +F  + D+  Q+ I+  G+
Sbjct: 309 TPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 352

Pichia angusta (taxid: 870730)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
224129102	387	formate dehydrogenase [Populus trichocar	0.995	0.568	0.887	1e-116
147810156	383	hypothetical protein VITISV_036417 [Viti	1.0	0.577	0.874	1e-116
225452472	383	PREDICTED: formate dehydrogenase, mitoch	1.0	0.577	0.874	1e-116
255552590	386	formate dehydrogenase, putative [Ricinus	1.0	0.572	0.874	1e-116
26454627	381	RecName: Full=Formate dehydrogenase, mit	1.0	0.580	0.878	1e-116
449446660	384	PREDICTED: formate dehydrogenase, mitoch	1.0	0.575	0.856	1e-115
211970690	386	formate dehydrogenase [Lotus japonicus]	1.0	0.572	0.860	1e-115
350538487	381	formate dehydrogenase [Solanum lycopersi	1.0	0.580	0.874	1e-114
449528140	315	PREDICTED: LOW QUALITY PROTEIN: formate	1.0	0.701	0.852	1e-114
218198209	376	hypothetical protein OsI_23019 [Oryza sa	1.0	0.587	0.852	1e-113

>gi|224129102|ref|XP_002320501.1| formate dehydrogenase [Populus trichocarpa] gi|118486031|gb|ABK94859.1| unknown [Populus trichocarpa] gi|222861274|gb|EEE98816.1| formate dehydrogenase [Populus trichocarpa]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/222 (88%), Positives = 211/222 (95%), Gaps = 2/222 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVI+GEWNVA +AYRAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 165 MRILILVRNFLPGYHQVINGEWNVAAIAYRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 224

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEK+TGAKFEEDLD++L KCD+VV+NTPLTEKTRGMFDK+RIAKMKK
Sbjct: 225 NLLYHDRLKMDPELEKQTGAKFEEDLDSLLSKCDVVVINTPLTEKTRGMFDKERIAKMKK 284

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDACSSG I GYSGDVWNPQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 285 GVLIVNNARGAIMDTQAVVDACSSGQIGGYSGDVWNPQPAPKDHPWRYMPNHAMTPHISG 344

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQY 220
           TTID  LRYAAGVKDMLDRYFKGE+FP QNYIVK G+LA QY
Sbjct: 345 TTIDGQLRYAAGVKDMLDRYFKGEEFPPQNYIVKEGKLASQY 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810156|emb|CAN71454.1| hypothetical protein VITISV_036417 [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/223 (87%), Positives = 211/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA QY+
Sbjct: 341 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLASQYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452472|ref|XP_002278444.1| PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera] gi|296087673|emb|CBI34929.3| unnamed protein product [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/223 (87%), Positives = 211/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFP Q+YIVK G+LA QY+
Sbjct: 341 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQHYIVKEGQLASQYQ 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552590|ref|XP_002517338.1| formate dehydrogenase, putative [Ricinus communis] gi|223543349|gb|EEF44880.1| formate dehydrogenase, putative [Ricinus communis]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/223 (87%), Positives = 212/223 (95%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVISG+WNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQVISGDWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE +TGAK+EEDLD MLPKCDIVV+NTPLTEKTRG+F+KDRIAK+KK
Sbjct: 224 NLLYHDRIKMDPELENQTGAKYEEDLDAMLPKCDIVVINTPLTEKTRGLFNKDRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GYSGDVW PQPA KDHPWRYMPNQAMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYSGDVWYPQPASKDHPWRYMPNQAMTPHISG 343

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGE+FP+QNYIVK G+LA QY+
Sbjct: 344 TTIDAQLRYAAGVKDMLDRYFKGEEFPLQNYIVKEGKLASQYQ 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26454627|sp|Q07511.2|FDH_SOLTU RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor gi|11991527|emb|CAA79702.2| mitochondrial formate dehydrogenase precursor [Solanum tuberosum]

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/223 (87%), Positives = 210/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446660|ref|XP_004141089.1| PREDICTED: formate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 214/223 (95%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 162 MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 222 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 282 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISG 341

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDML+RYFKGE+FP QNYIVK G+LAPQYR
Sbjct: 342 TTIDAQLRYAAGVKDMLERYFKGEEFPAQNYIVKEGQLAPQYR 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211970690|emb|CAR98204.1| formate dehydrogenase [Lotus japonicus]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 211/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQ I+GEWNVAG+A+RAYDLEGKT+GTVG GRIGKLLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KM+P+LEKE GAKFEEDLD MLPKCD++V+NTPLT+KTRG+FDK+RIAK+KK
Sbjct: 224 NLLYHDRLKMEPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTDKTRGLFDKNRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDML+R+FKGEDFP QNYIVK G+LA QYR
Sbjct: 344 TTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIVKEGQLASQYR 386

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538487|ref|NP_001234857.1| formate dehydrogenase [Solanum lycopersicum] gi|56562181|emb|CAH60893.1| formate dehydrogenase [Solanum lycopersicum]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/223 (87%), Positives = 209/223 (93%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDH WRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISG 338

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct: 339 TTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528140|ref|XP_004171064.1| PREDICTED: LOW QUALITY PROTEIN: formate dehydrogenase, mitochondrial-like, partial [Cucumis sativus]

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 213/223 (95%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 93  MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 152

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 153 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 212

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYM NQAMTPH+SG
Sbjct: 213 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMANQAMTPHISG 272

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDML+RYFKGE+FP QNYIVK G+LAPQYR
Sbjct: 273 TTIDAQLRYAAGVKDMLERYFKGEEFPAQNYIVKEGQLAPQYR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198209|gb|EEC80636.1| hypothetical protein OsI_23019 [Oryza sativa Indica Group]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/223 (85%), Positives = 209/223 (93%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVQGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct: 334 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	1.0	0.575	0.820	2.3e-101
ASPGD|ASPL0000003895	365	aciA [Emericella nidulans (tax	0.981	0.594	0.530	1.7e-59
UNIPROTKB|O13437	364	FDH1 "Formate dehydrogenase" [	0.972	0.590	0.486	2.4e-53
SGD|S000005915	376	FDH1 "NAD(+)-dependent formate	0.972	0.571	0.461	5.4e-47
CGD|CAL0000982	379	FDH1 [Candida albicans (taxid:	0.977	0.569	0.479	3.8e-46
UNIPROTKB|Q59QN6	379	FDH1 "Potential NAD-formate de	0.977	0.569	0.479	3.8e-46
CGD|CAL0001883	379	orf19.1117 [Candida albicans (	0.977	0.569	0.45	8.1e-44
UNIPROTKB|Q59N71	379	FDH98 "Potential NAD-formate d	0.977	0.569	0.45	8.1e-44
SGD|S000005218	350	GOR1 "Glyoxylate reductase" [S	0.696	0.44	0.440	2.8e-27
CGD|CAL0006135	342	GOR1 [Candida albicans (taxid:	0.782	0.505	0.365	3.2e-26

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 183/223 (82%), Positives = 204/223 (91%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct:   162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query:    61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
             NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct:   222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query:   121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
             GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct:   282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query:   181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
             TTID  LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:   342 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

ASPGD|ASPL0000003895 aciA [Emericella nidulans (taxid:162425)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 120/226 (53%), Positives = 159/226 (70%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct:   130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct:   190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
              G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct:   250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query:   175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 217
              PH+SGT+ID  +RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:   310 VPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 355

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;RCA

GO:0033609 "oxalate metabolic process" evidence=RCA

GO:0006083 "acetate metabolic process" evidence=IEP

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|O13437 FDH1 "Formate dehydrogenase" [Candida boidinii (taxid:5477)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 109/224 (48%), Positives = 152/224 (67%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct:   129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct:   189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
             KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct:   249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query:   175 TPHVSGTTIDL--RYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
             TPH SGTT+D   RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct:   309 TPHYSGTTLDAQTRYAEGTKNILESFFTGKFDYRPQDIILLNGE 352

GO:0005829 "cytosol" evidence=ISS

GO:0006734 "NADH metabolic process" evidence=IMP

GO:0006735 "NADH regeneration" evidence=IDA

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IMP;IDA

GO:0015946 "methanol oxidation" evidence=IMP

GO:0030416 "methylamine metabolic process" evidence=IMP

GO:0042183 "formate catabolic process" evidence=IDA

GO:0042426 "choline catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070403 "NAD+ binding" evidence=IDA

SGD|S000005915 FDH1 "NAD(+)-dependent formate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 109/236 (46%), Positives = 149/236 (63%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
             IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG  +L+RL  FN   
Sbjct:   133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKK 192

Query:    62 LLYHDRVKMDPQ-LEK--ETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGM 109
             LLY+D  ++  + + +  E    F          E L+ M+ + D+V +N PL + +RG+
Sbjct:   193 LLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGL 252

Query:   110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 169
             F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M
Sbjct:   253 FNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTM 312

Query:   170 PNQ-----AMTPHVSGTTIDL--RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 217
              N+     AMT H+SGT++D   RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:   313 DNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;IGI;ISS;IDA

GO:0042183 "formate catabolic process" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0000982 FDH1 [Candida albicans (taxid:5476)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 115/240 (47%), Positives = 148/240 (61%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDL--RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 217
              M N        AMT HVSGT++D   RYA GVK +L  YF K  ++  Q+ IV  G+ A
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRPQDVIVIDGDYA 369

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|Q59QN6 FDH1 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 115/240 (47%), Positives = 148/240 (61%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDL--RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 217
              M N        AMT HVSGT++D   RYA GVK +L  YF K  ++  Q+ IV  G+ A
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQARYANGVKQILTEYFNKTYNYRPQDVIVIDGDYA 369

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

CGD|CAL0001883 orf19.1117 [Candida albicans (taxid:5476)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 108/240 (45%), Positives = 144/240 (60%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDL--RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 217
              M N        AMT HVSGT++D   RYA GVK +L  YF K   +  Q+ I+  G  A
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRPQDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q59N71 FDH98 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 108/240 (45%), Positives = 144/240 (60%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDL--RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 217
              M N        AMT HVSGT++D   RYA GVK +L  YF K   +  Q+ I+  G  A
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQARYANGVKQILTEYFDKTYKYRPQDVIIIDGHYA 369

GO:0005575 "cellular_component" evidence=ND

SGD|S000005218 GOR1 "Glyoxylate reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/161 (44%), Positives = 99/161 (61%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRA---YDLEGKTVGTVGCGRIGKLLLQRLKPFN 59
             +L  +RNF  G+ ++I G W  AG A  +   YD EGKTVG +G GRIG+ +L+RLKPF 
Sbjct:   127 LLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFG 186

Query:    60 C-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
               N +YH+R ++ P  E+E G ++    +  L + DIV VN PL   T  + + + I KM
Sbjct:   187 FENFIYHNRHQL-PS-EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKM 243

Query:   119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159
             K GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:   244 KDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284

GO:0047964 "glyoxylate reductase activity" evidence=IEA;IMP

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0006135 GOR1 [Candida albicans (taxid:5476)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 68/186 (36%), Positives = 108/186 (58%)

Query:     3 ILILVRNFLPGHHQVISGEW------NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
             +L  +RNFL G   +++GEW        AG A   +  +GK VG +G G IG+ +  RLK
Sbjct:   126 VLACMRNFLQGRQILMNGEWPSNGDKEAAG-APLGHTPQGKVVGILGMGGIGRAIRDRLK 184

Query:    57 PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
             PF  + ++Y++R ++ P+LEK  GA++   +D +  + D++++  PL  KTR + DK+ I
Sbjct:   185 PFGFDGIVYYNRKQLSPELEK--GAEYVT-MDELFKQSDVIIIGVPLNAKTRHLIDKEAI 241

Query:   116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
              KMK GV++VN ARGAI+D + + +   SG I  +  DV+  +P         +PN    
Sbjct:   242 QKMKDGVVLVNIARGAIIDEKHLPELIKSGKIGAFGADVFEHEPEVSAELVN-LPNVVAL 300

Query:   176 PHVSGT 181
             PH+ GT
Sbjct:   301 PHM-GT 305

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0047964 "glyoxylate reductase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7E4	FDH_ARATH	1, ., 2, ., 1, ., 2	0.8206	1.0	0.5755	yes	no
Q9SXP2	FDH1_ORYSJ	1, ., 2, ., 1, ., 2	0.8520	1.0	0.5877	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.2	0.946
3rd Layer	1.2.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-178
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-142
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-108
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	4e-69
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	6e-69
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-66
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-62
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	6e-57
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-56
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-56
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	4e-55
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	8e-54
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	1e-51
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	8e-50
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-46
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	9e-46
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-45
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	5e-44
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	5e-43
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	6e-43
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-42
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-42
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	7e-42
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-40
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-40
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	3e-39
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	6e-39
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	9e-39
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-38
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-37
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-37
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	5e-37
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-34
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	3e-34
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	1e-33
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-32
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	7e-32
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-31
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-31
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-31
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	1e-30
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-30
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-30
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	7e-30
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	6e-27
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	1e-26
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	5e-26
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	2e-25
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	3e-25
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-24
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-22
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-22
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-19
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	5e-17
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	2e-15
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	1e-13
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-12
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	3e-12
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	5e-12
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	2e-06
COG1712	255	COG1712, COG1712, Predicted dinucleotide-utilizing	7e-04
PRK13304	265	PRK13304, PRK13304, L-aspartate dehydrogenase; Rev	0.001

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  493 bits (1271), Expect = e-178
 Identities = 197/223 (88%), Positives = 211/223 (94%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+HQV+SGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEKETGAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAGVKDMLDRYFKGEDFP QNYIVK G+LA QY+
Sbjct: 344 TTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ 386

Length = 386

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  401 bits (1032), Expect = e-142
 Identities = 132/222 (59%), Positives = 169/222 (76%), Gaps = 2/222 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M ILILVRN++PGH Q I G WNVA V  RAYDLEGKTVGTVG GRIG  +L+RLKPF+ 
Sbjct: 127 MMILILVRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +LLY+DR ++  ++EKE G     DL+ M+ KCD+V +N PL  +T G+F+K+ ++KMKK
Sbjct: 187 HLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKK 246

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I D +AV +A  SGH+AGY+GDVW PQPAPKDHPWR MPN AMTPH+SG
Sbjct: 247 GAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISG 306

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQY 220
           TT+D   RYAAG K++L+R+F+GE F  +  IV+ G+LA + 
Sbjct: 307 TTLDAQARYAAGTKEILERFFEGEPFRPEYLIVQGGKLAGKG 348

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  316 bits (811), Expect = e-108
 Identities = 109/219 (49%), Positives = 147/219 (67%), Gaps = 2/219 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+ P H Q + G WN+A    R+YDLEG TVG VG GRIG  +L+RLKPF+ 
Sbjct: 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            L Y DR ++  ++E+E G  +    D+++  CD+V ++ PL  +T  +FD D +++MK+
Sbjct: 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I+D  AVV A  SGH+AGY+GDVW PQPAP DHPWR MP   MTPH+SG
Sbjct: 277 GSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISG 336

Query: 181 TTIDL--RYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           TT+    RYAAG +++L+ +F+G     +  IV  G LA
Sbjct: 337 TTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLA 375

Length = 385

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  213 bits (544), Expect = 4e-69
 Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 5/200 (2%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R        V  G W      +  Y+LEGKTVG VG GRIG+ + +RL+ F  
Sbjct: 106 GLLLALLRRLPRADAAVRRG-WGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGM 164

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR +  P+ E++ G +    LD +L + D+VV++ PLT +TR + +++ +A MK 
Sbjct: 165 KVLYYDRTRK-PEPEEDLGFRVV-SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKP 222

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G ++VN ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++G
Sbjct: 223 GAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAG 282

Query: 181 TTID--LRYAAGVKDMLDRY 198
            T +   R A    + L+R+
Sbjct: 283 YTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  213 bits (545), Expect = 6e-69
 Identities = 84/219 (38%), Positives = 126/219 (57%), Gaps = 12/219 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR--AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R    G  +V  G W+++G       +DL GKT+G +G GRIG+ + +RLK F  
Sbjct: 111 ILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM 170

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR   +P+ EKE GA++  DLD +L + DI+ ++ PLT +TR + + + +AKMK 
Sbjct: 171 KVLYYDRSP-NPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKP 228

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ---AMTPH 177
           G ++VN ARG ++D QA++DA  SG IAG   DV+  +PA  DHP   + N     +TPH
Sbjct: 229 GAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPH 288

Query: 178 VSGTTIDLR--YAAGVKDMLDRYFKGEDFPVQNYIVKAG 214
           ++  T + R   A    + L+ +F G    V    V   
Sbjct: 289 IASATEEARKAMAELALENLEAFFDGG---VPPNEVNPE 324

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  201 bits (515), Expect = 2e-66
 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       QV +G W     A    +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 4   LLALARRIPEADRQVRAGRWR--PDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKV 61

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +DR        +  GA++   LD +L + D+V ++ PLT +TR + + +R+A MK G 
Sbjct: 62  IAYDRYPKAE--AEALGARYV-SLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           +++N ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  196 bits (501), Expect = 2e-62
 Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 5/202 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R           GEW+    A+R  +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 111 LLALARRIPDADASQRRGEWD--RKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D      +     G    + LD +L + DI+ ++ PLT +TRG+ + + +AKMK G 
Sbjct: 169 IGYDPYSP-RERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D  A++ A  SG IAG + DV+  +P P D P   +PN  +TPH+ G+T
Sbjct: 228 ILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGST 287

Query: 183 --IDLRYAAGVKDMLDRYFKGE 202
                R A  V + + RY  G 
Sbjct: 288 DEAQERVAEIVAENIVRYLAGG 309

Length = 324

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  182 bits (465), Expect = 6e-57
 Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 4   LIL--VRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           LIL  +RNF        +G+W        A+D  GKT+G +G G IGK + ++   F   
Sbjct: 120 LILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMK 179

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH+R ++  +LEK   A +   LD +L + D+V +N PLT  TR + +K   AKMK G
Sbjct: 180 IIYHNRSRLPEELEKAL-ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDG 238

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN--PQPAPKDHPWRYMPNQAMTPHVS 179
           V+IVN ARGA++D  A+VDA  SG +A    DV+   P+  P       MPN  + PH+ 
Sbjct: 239 VIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPG---LLKMPNVTLLPHMG 295

Query: 180 GTTID 184
             T++
Sbjct: 296 TLTVE 300

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  181 bits (462), Expect = 1e-56
 Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 8/203 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN       + +G+W+     +   +L GKT+G VG GRIG+ + +R + F   +
Sbjct: 107 MLALARNIPQADASLRAGKWDRK--KFMGVELRGKTLGIVGLGRIGREVARRARAFGMKV 164

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +  +     G +    LD +L + D + ++TPLT +TRG+ + + +AKMK G 
Sbjct: 165 LAYDPY-ISAERAAAGGVELV-SLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG I+D  A+ DA  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 223 ILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGAST 282

Query: 183 IDLRYAAGV---KDMLDRYFKGE 202
            + +    V   + +L     GE
Sbjct: 283 EEAQERVAVDAAEQVLA-VLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  181 bits (462), Expect = 1e-56
 Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 4/205 (1%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L L+R       ++ +G W        + +L GKTVG VG G IG+ + +RL+ F  
Sbjct: 108 MLMLALLRRLPEADRELRAGRWG-RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++Y+DR +     EK+ G ++ E LD +L + D+V ++ PLT +TR +   + +A MK 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVE-LDELLAESDVVSLHVPLTPETRHLIGAEELAAMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G +++N ARG ++D +A++ A  SGH+AG   DV+  +P P D P   + N  +TPH++G
Sbjct: 226 GAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAG 285

Query: 181 TTIDL--RYAAGVKDMLDRYFKGED 203
            T +   R AA V + + R  +GE 
Sbjct: 286 VTDESYQRMAAIVAENIARLLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  177 bits (452), Expect = 4e-55
 Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 5/188 (2%)

Query: 4   LIL--VRNFLPGHHQVISGEW-NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           L+L   R  + G   V +GEW   +       DL GKT+G VG GRIG+ + +R K F  
Sbjct: 109 LLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGM 168

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LYH+R +  P+ E+E GA++   LD +L + D V ++ PLT +TR + + +R+A MK 
Sbjct: 169 KILYHNRSRK-PEAEEELGARYV-SLDELLAESDFVSLHCPLTPETRHLINAERLALMKP 226

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
             +++N ARG ++D  A+V+A  SG IAG   DV+ P+P P DHP   +PN  + PH+  
Sbjct: 227 TAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGS 286

Query: 181 TTIDLRYA 188
            T++ R A
Sbjct: 287 ATVETRTA 294

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  174 bits (443), Expect = 8e-54
 Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +V +G W+         +L GKT+G +G GRIGK + +RL  F   +
Sbjct: 113 MLALARQIPQADREVRAGGWDRPV----GTELYGKTLGIIGLGRIGKAVARRLSGFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    D +  KE G +F   L+ +L + D + ++ PLT +TR + +   +A MK G 
Sbjct: 169 LAYDPYP-DEEFAKEHGVEFV-SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D +A+ +A  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 227 ILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGAST 286

Query: 183 IDLRYAAGVK--DMLDRYFK 200
            +     G      +     
Sbjct: 287 KEAVLRMGTMAAQNVIDVLA 306

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  169 bits (430), Expect = 1e-51
 Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 6/201 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--DLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           +L   RN    H  +  GEW      Y  Y  +L GKTVG VG G IG+ + +RLK F  
Sbjct: 112 MLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGA 171

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +L +D   +DP+  +  G K    L+ +L + D+V ++  LT +TRGM   +  A MK 
Sbjct: 172 EVLVYDPY-VDPEKIEADGVKKV-SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKP 229

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
               +N AR  ++D  A+++A   G I G + DV+  +P P DHP   + N  +TPH++G
Sbjct: 230 TAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNVTLTPHIAG 289

Query: 181 TTID-LRYAAG-VKDMLDRYF 199
            T D    +   + + L RY 
Sbjct: 290 ATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  164 bits (416), Expect = 8e-50
 Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 33/202 (16%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             I   +    PG                 A D+ GKTV  VG G +GK   Q L+    
Sbjct: 138 QFIARFLEVQQPGR-------------LGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGA 184

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-DKDRIAKMK 119
            +L  D      +  +E G K  E+L+  L + D++V  T L  K  G+   ++ + +MK
Sbjct: 185 QVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMK 244

Query: 120 KGVLIVNNARGAIMDTQAVV-DACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
            G +IVN A GA+   QA+       GH   + GDV  P P                   
Sbjct: 245 PGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGC----------------A 288

Query: 179 SGTTID--LRYAAGVKDMLDRY 198
            G   D  LR AA     L + 
Sbjct: 289 MGVPWDATLRLAANTLPALVKL 310

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  155 bits (395), Expect = 1e-46
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN--VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R        V +G W+  V G   R   L G T+G VG GRIG+ + +R K F  
Sbjct: 110 ILALARKLPFLDRAVRAGGWDWTVGGPIRR---LRGLTLGLVGFGRIGRAVAKRAKAFGF 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D       +    G +    LD +L + D+V ++ PLT +TR + D + +A MK 
Sbjct: 167 RVIAYDPYV-PDGVAALGGVRVV-SLDELLARSDVVSLHCPLTPETRHLIDAEALALMKP 224

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           G  +VN ARG ++D  A+  A  SG IAG + DV   +P P D P    PN  +TPH +
Sbjct: 225 GAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAA 283

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  154 bits (390), Expect = 9e-46
 Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP-FN 59
             IL ++R        V  G+W      +  ++L GKTVG +G G IG  + + LK  FN
Sbjct: 113 ALILTVLRKINQASEAVKEGKWTER-ANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFN 171

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             +L +D      ++ K+ GAK    L+ +L + DI+ ++ PLTE+T  M ++   +KMK
Sbjct: 172 AKVLAYDPYV-SEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           KGV++VN ARG ++D +A+++A  SG IAG   DV   +P   DHP  +  N  +TPH+ 
Sbjct: 230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIG 289

Query: 180 GTTIDLRYAAGVK--DMLDRYFKGE 202
             T +  Y  G K  D ++ +  G+
Sbjct: 290 AYTYESLYGMGEKVVDDIEDFLAGK 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  157 bits (400), Expect = 2e-45
 Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 25/216 (11%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN    H  + +G+W      +   +L GKT+G +G GRIG  + +R K F   +
Sbjct: 109 MLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKV 166

Query: 63  L-YHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           + Y      DP +   +  +  +       LD +L + D + ++TPLT +TRG+   + +
Sbjct: 167 IAY------DPYI---SPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL 217

Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           AKMK GV I+N ARG I+D  A+ +A  SG +AG + DV+  +P P D P   +PN  +T
Sbjct: 218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPNVVVT 276

Query: 176 PHVSGTTIDLRYAAGV---KDMLDRYFKGEDFPVQN 208
           PH+  +T + +    +   + ++D   +G   PV N
Sbjct: 277 PHLGASTAEAQENVAIQVAEQVID-ALRGG--PVPN 309

Length = 526

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  149 bits (379), Expect = 5e-44
 Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 5/202 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL+ +R          +G             L G+TVG VG GRIG+ +++ L+PF   +
Sbjct: 117 ILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRV 176

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +        G +    LD +L + D+V ++ PLT +TRGM D   +A M+ G 
Sbjct: 177 LVYDPY-LPAAEAAALGVE-LVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGA 234

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
             +N ARGA++D  A++    SG +     DV +P+P P D P R +PN  +TPH++G+T
Sbjct: 235 TFINTARGALVDEAALLAELRSGRLRAAL-DVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293

Query: 183 IDLRYAAG--VKDMLDRYFKGE 202
            D R   G    D L+R+  GE
Sbjct: 294 GDERRRLGDYALDELERFLAGE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (371), Expect = 5e-43
 Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L +  +   + +  G W+  AG    + +L GKTVG +G G IG+ + + LK F   
Sbjct: 103 ILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMR 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++   R   + +     G     DLD  L + D+VVV  PLT++TRG+     +A MK G
Sbjct: 163 VIGVSRSPKEDEGADFVG--TLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPG 220

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW------NPQPAPKDHPWRYMPNQAMT 175
            ++VN  RG ++D +A+ +A     IAG + DVW          AP  +P+  +PN  M+
Sbjct: 221 AILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMS 280

Query: 176 PHVSGTTIDL--RYAAGVKDMLDRYFKGE 202
           PH +G T +   R      + + RY +GE
Sbjct: 281 PHNAGWTEETFRRRIDEAAENIRRYLRGE 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (370), Expect = 6e-43
 Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 16  QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           +  +  W+ A        L G TV  VG G IG+ L+  L PF   ++  +R     +  
Sbjct: 105 RARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEGA 164

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
            ET     + LD + P  D VV+  PLT +TR + D   +A MK    +VN ARG ++DT
Sbjct: 165 DETVPA--DRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDT 222

Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT--IDLRYAAGVKD 193
            A+VDA  SG IAG + DV +P+P P  HP   +PN  +TPHV+ T   I    A  V +
Sbjct: 223 DALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAE 282

Query: 194 MLDRYFKGEDFP 205
            +  +  GE   
Sbjct: 283 NVRAFAAGEPLL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  145 bits (368), Expect = 2e-42
 Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 5/203 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY-RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L R    G   +  G +      +   ++L GKT+G +G GRIG+ + +R K F   
Sbjct: 110 ILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           +LY++R ++  + EKE GA +  DLD +L + D V ++ P T +T  + D      MK  
Sbjct: 170 ILYYNRHRLSEETEKELGATYV-DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPT 228

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
             ++N ARG ++D +A+VDA  +G IAG + DV+  +P       + + N  +TPH+   
Sbjct: 229 AYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDNVILTPHIGNA 287

Query: 182 TIDLRYAAG--VKDMLDRYFKGE 202
           T++ R A      D +  + +G+
Sbjct: 288 TVEARDAMAKEAADNIISFLEGK 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  145 bits (368), Expect = 2e-42
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 8/189 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R  +   H V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +LY+ R +  P+ EKE GA++   L+ +L + D V ++ PLT++T  M +++R+  
Sbjct: 172 FGMRILYYSRTR-KPEAEKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MK   ++VN ARG ++DT+A+V A   G IAG   DV+  +P   +     + N  + PH
Sbjct: 230 MKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPH 288

Query: 178 VSGTTIDLR 186
           +   T + R
Sbjct: 289 IGSATFEAR 297

Length = 333

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  143 bits (364), Expect = 7e-42
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 6   LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH 65
           L+RN +P    V +G    AG      +L GKTVG VG G IG  + +  K F C +L +
Sbjct: 117 LLRNIVPCDAAVRAGG-TKAG--LIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAY 173

Query: 66  DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125
            R +   +  K  G ++   LD +L + DIV ++ PL ++T+G+  K+++A MK+  +++
Sbjct: 174 SRSE--KEEAKALGIEYV-SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILI 230

Query: 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-PKDHPWRYMPNQAMTPHV 178
           N ARG ++D +A+ DA + G IAG   DV++ +P  P D+P  + PN  +TPHV
Sbjct: 231 NTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHV 284

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  139 bits (354), Expect = 2e-40
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 92
           L GKTV  VG G IG+ + +R K F   ++   R  +  P +  E      ++LD +LP+
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYT--PDELDELLPE 189

Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D VV   PLT +TRG+F+ +R A MK G +++N  RG+++D  A+++A  SG IAG + 
Sbjct: 190 ADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAAL 249

Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDL--RYAAGVKDMLDRYFKGED 203
           DV+  +P P D P   +PN  +TPH+SG +     R      + L RY  GE 
Sbjct: 250 DVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENLRRYLAGEP 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  140 bits (354), Expect = 2e-40
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ L R+ L G   V SG++      +    L+GKTVG +G G +G+ + +RL  F   L
Sbjct: 111 LIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATL 170

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+D   +D   E+    +  E LD +L   D +V+  PLT  T  + + + +AKMK G 
Sbjct: 171 LYYDPHPLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGA 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----WNPQPAPKDHPWRYM---PNQAM 174
           L+VN  RG+++D  AV +A  SGH+ GY+ DV     W     P+  P   +        
Sbjct: 230 LLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVF 289

Query: 175 TPHVSGTTIDLR 186
           TPH+     ++R
Sbjct: 290 TPHIGSAVDEVR 301

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  140 bits (356), Expect = 3e-39
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 18/205 (8%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L   RN       +  GEW+    A+   +L GKT+G +G GRIG ++ +R K F  
Sbjct: 105 AMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM 162

Query: 61  NLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            +L +D     P +  E     G +  +DLD +L + D + V+TPLT +TRG+   + +A
Sbjct: 163 KVLAYD-----PYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA 217

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
           KMKKGV+IVN ARG I+D  A+ +A   GH+   + DV+  +P P D+P   + N   TP
Sbjct: 218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATP 276

Query: 177 HVSGTT------IDLRYAAGVKDML 195
           H+  +T      +  + A  V D L
Sbjct: 277 HLGASTREAQENVATQVAEQVLDAL 301

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  136 bits (344), Expect = 6e-39
 Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 13/183 (7%)

Query: 4   LIL-VRNFLPGHHQVI-SGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           L+L +   +  H+ V+ +GEW  +       Y   +L GKT+G +G G IG+ + +  + 
Sbjct: 109 LLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARA 168

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +L+ +R    P  E          LD +L + D++ ++ PLT +TR + + + +AK
Sbjct: 169 FGMKVLFAERKGAPPLREGYV------SLDELLAQSDVISLHCPLTPETRNLINAEELAK 222

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTP 176
           MK G +++N ARG ++D QA+ DA +SG IAG   DV + +P   D+P  +  PN  +TP
Sbjct: 223 MKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNLIITP 282

Query: 177 HVS 179
           H++
Sbjct: 283 HIA 285

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  135 bits (342), Expect = 9e-39
 Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 5/182 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R     + ++  G+WN     Y+  +L GKT+G +G GRIG+ + +  +    N+
Sbjct: 108 MLSLARFIHRANREMKLGKWNKK--KYKGIELRGKTLGIIGFGRIGREVAKIARALGMNV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D    D Q   E G K    L+ +L   D + ++ PLT +T+ M +K  +  MK G 
Sbjct: 166 IAYDPYPKDEQ-AVELGVKTV-SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +I+N +RG ++D +A+++A  SG +AG + DV+  +P P       +PN ++TPH+  +T
Sbjct: 224 IIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNVSLTPHIGAST 282

Query: 183 ID 184
            +
Sbjct: 283 KE 284

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  135 bits (341), Expect = 2e-38
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 23/192 (11%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+ +R +     +    ++++ G+  +  +L   TVG +G GRIG+ +++ L  F C
Sbjct: 110 MLMLMALRKYKQIMKRAEVNDYSLGGL--QGRELRNLTVGVIGTGRIGQAVIKNLSGFGC 167

Query: 61  NLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
            +L +D          E   K+ E  DLDT+  + DI+ ++TPLTE+T  + +K+ IAKM
Sbjct: 168 KILAYDP------YPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKM 221

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW---------NPQPAPKDHPW--- 166
           K GV+I+N ARG ++DT+A+++   SG I G + DV          + +     +     
Sbjct: 222 KDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI 281

Query: 167 -RYMPNQAMTPH 177
            R  PN  +TPH
Sbjct: 282 LRSFPNVILTPH 293

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (333), Expect = 2e-37
 Identities = 68/187 (36%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 19  SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78
            G W           L  + V  VG G IG+ + +RL PF   +    RV    +   E 
Sbjct: 119 RGRWEPRRTP----SLADRRVLIVGYGSIGRAIERRLAPFEVRVT---RVARTAR-PGEQ 170

Query: 79  GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138
               +E L  +LP+ D+VV+  PLT++TRG+ D + +A+M  G L+VN ARG ++DT A+
Sbjct: 171 VHGIDE-LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229

Query: 139 VDACSSGHI-AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDL--RYAAGVKDML 195
           V   +SG + A    DV +P+P P  HP    P   +TPHV G T     R  A V+  L
Sbjct: 230 VAELASGRLRAAL--DVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQL 287

Query: 196 DRYFKGE 202
            RY  GE
Sbjct: 288 RRYAAGE 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  131 bits (332), Expect = 3e-37
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 22/161 (13%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL----------YHDRVKMDPQLEKETGAK 81
            +L GKT+  +G G IG+ + +RLK F   ++          Y D+              
Sbjct: 131 LELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL---------- 180

Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
             E+LD +L + DIVV   PLTE+T  +FD+    +MKKG L +N  RG  +D  A+++A
Sbjct: 181 --EELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEA 238

Query: 142 CSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
             +  I G + DV+  +P PKD P   + N  +TPH+SG +
Sbjct: 239 LKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPHISGVS 279

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  131 bits (332), Expect = 5e-37
 Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           +DL GKTVG +G G+IG+   + LK F C +L +D    +P+L K  G ++  DLD +L 
Sbjct: 140 FDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYD-PYPNPELAKL-GVEYV-DLDELLA 196

Query: 92  KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151
           + DI+ ++ PLT +T  + + + IAKMK GV+++N +RG ++DT+A+++A  SG I G  
Sbjct: 197 ESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLG 256

Query: 152 GDV 154
            DV
Sbjct: 257 LDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  124 bits (314), Expect = 1e-34
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 3   ILILVRNFLPGHHQVISG---------EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 53
           +L L RN +     V +G         E       +   +L GKT+G +G G IG+L+  
Sbjct: 95  MLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQ--FVGTELRGKTLGVIGLGNIGRLVAN 152

Query: 54  RLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGMFD 111
                   ++ +D   +  +   +   + +    L+ +L   D + ++ PLT++TRG+ +
Sbjct: 153 AALALGMKVIGYDPY-LSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLIN 211

Query: 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171
            + +AKMK G +++N ARG I+D +A+++A   G + GY  D   P+PA   H     PN
Sbjct: 212 AELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDF--PEPALLGHL----PN 265

Query: 172 QAMTPHVSGTTIDLRYAAGVK--DMLDRYFKGEDFP 205
              TPH+  +T +      V     +  + +  +  
Sbjct: 266 VIATPHLGASTEEAEENCAVMAARQIMDFLETGNIT 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  123 bits (312), Expect = 3e-34
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 27/196 (13%)

Query: 1   MRILILVRNFLPGHHQVISGE--WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
            + L L+RN      +V  G+  W    +     DL   TVG +G GRIG    +  K F
Sbjct: 111 TQALNLLRNTPEIDRRVAKGDFRWAPGLIGREIRDL---TVGIIGTGRIGSAAAKIFKGF 167

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              ++ +D    +P+LEK       + L+ +L + DI+ ++ PLT++   + + +  AKM
Sbjct: 168 GAKVIAYDPYP-NPELEKFLLYY--DSLEDLLKQADIISLHVPLTKENHHLINAEAFAKM 224

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWR 167
           K G ++VN ARG ++DT+A++DA  SG IAG + D            W+ +    +    
Sbjct: 225 KDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDE---V 281

Query: 168 Y-----MPNQAMTPHV 178
                 MPN  +TPH+
Sbjct: 282 LKELIAMPNVLITPHI 297

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  122 bits (308), Expect = 1e-33
 Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L R     +     G WN    A  ++++ GKT+G +G G IG  L    +     +
Sbjct: 109 IIMLARRLPDRNAAAHRGIWN--KSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRV 166

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +++D      +L     A+    L+ +L + D V ++ P T  T+ M   + IA+MKKG 
Sbjct: 167 IFYDIA---EKLPLGN-ARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHV 178
           +++N +RG ++D  A+ +A  SGH+AG + DV+  +PA    P+    + +PN  +TPH+
Sbjct: 223 ILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHI 282

Query: 179 SGTTIDLRYAAGV 191
            G+T + +   G+
Sbjct: 283 GGSTEEAQENIGL 295

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  119 bits (301), Expect = 2e-32
 Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 24/196 (12%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +   G+++ AG+  R ++L GKT+G VG GRIG+ + +  + F   +
Sbjct: 108 LLALSRKLREAIERTRRGDFSQAGL--RGFELAGKTLGVVGTGRIGRRVARIARGFGMKV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D V  D +L +  G ++   L+ +L + DI+ ++ P T +T  + +++  A MK G 
Sbjct: 166 LAYDVVP-DEELAERLGFRYV-SLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------------WNPQPAP-------K 162
           +++N ARGA++DT+A+V A   G +AG   DV             +    +P        
Sbjct: 224 VLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLA 283

Query: 163 DHPWRYMPNQAMTPHV 178
           DH     PN  +TPHV
Sbjct: 284 DHALLRKPNVIITPHV 299

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  117 bits (296), Expect = 7e-32
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 16  QVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQ 73
           +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   +
Sbjct: 124 RVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKE 182

Query: 74  LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133
            E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++
Sbjct: 183 AEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241

Query: 134 DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRY 187
           D  A++ A   G I     DV+  +P   D P   +PN    PH+   T + RY
Sbjct: 242 DENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRY 295

Length = 323

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (294), Expect = 1e-31
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 24/195 (12%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L         +V +G W+  G   R  +L GKTVG +G G +GK   +RL  F C +
Sbjct: 107 LLALFNKLNRADQEVRNGIWDREG--NRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKV 164

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           + +D+        K  G  +  +  L+T+  + DI+ ++ PLT +TRGM +K+ I+  KK
Sbjct: 165 IAYDK-------YKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKK 217

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW--------NPQPAPKDHPWRYM--- 169
               +N ARG ++ T+ +V A  SG I G   DV         +    P+   + Y+   
Sbjct: 218 PFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEA--FEYLIKS 275

Query: 170 PNQAMTPHVSGTTID 184
           P   +TPH++G T +
Sbjct: 276 PKVILTPHIAGWTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  116 bits (293), Expect = 2e-31
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 9/202 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L RN       + +G W           L GKT+G VG GRIG  + +  + F   +
Sbjct: 113 ILALARNLPEEDAALRAGGWQTTL----GTGLAGKTLGIVGLGRIGARVARIGQAFGMRV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +      +  +     G +     + +    D+V ++  L+++TRG+   + +A MK   
Sbjct: 169 IAWSS-NLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH---VS 179
           L+VN +RG ++D  A++ A  +G IAG + DV++ +P P DHP R +PN  +TPH   V+
Sbjct: 228 LLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVT 287

Query: 180 GTTIDLRYAAGVKDMLDRYFKG 201
               +  Y   V+++   +  G
Sbjct: 288 EEAYEGFYGQAVENIA-AWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  116 bits (293), Expect = 3e-31
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 29/180 (16%)

Query: 20  GEWNVAGVAYRAY----DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
            E+ ++ +   A      L+GKTVG VG G +G  L +RL+    N+L  D     P+ E
Sbjct: 95  AEYVLSALLVLAQRQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCD----PPRAE 150

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGA 131
            E    F   L+ +L + DI+ ++ PLT      T  + D+D +A +K G +++N +RGA
Sbjct: 151 AEGDPGFV-SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGA 209

Query: 132 IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTID 184
           ++D QA++     G       DVW  +P           +  +       TPH++G +++
Sbjct: 210 VIDNQALLALLQRGKDLRVVLDVWENEPE---------IDLELLDKVDIATPHIAGYSLE 260

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  114 bits (287), Expect = 1e-30
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 5/171 (2%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L G T+G VG G IG+ L +R       +L    ++   +     G +   DL  +  + 
Sbjct: 133 LAGSTLGIVGFGAIGQALARRALALGMRVL---ALRRSGRPSDVPGVEAAADLAELFARS 189

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +V+  PLT +TR + + D +A+ K G+ ++N ARG ++D +A+++A  SG I+  S D
Sbjct: 190 DHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLD 249

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGE 202
           V +P+P P+ HP    P   ++PH S    D     A    + L RY  G+
Sbjct: 250 VTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQ 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  114 bits (287), Expect = 1e-30
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G W        A +     VG +G G +G  + +RL      +    R   D     E  
Sbjct: 120 GVWK-PLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDI----EGV 171

Query: 80  AKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
             F  EE LD  L + DI+V   PLT +TRG+ + + +A++ +G  ++N  RG  +    
Sbjct: 172 TCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEAD 231

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDLRYAAGVKDMLD 196
           ++ A  SGH++G   DV+  +P P DHP WR  P   +TPH++  T     AA V + + 
Sbjct: 232 LLAALDSGHLSGAVLDVFEQEPLPADHPLWR-HPRVTVTPHIAAITDPDSAAAQVAENIR 290

Query: 197 RYFKGEDFP 205
           R   GE  P
Sbjct: 291 RLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  114 bits (287), Expect = 1e-30
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L+RN    +        ++        +LE +TVG VG G+IG+ + QR K F   +
Sbjct: 112 ILALLRNR--KYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKV 169

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  +  P+LE + G K+   L+ +    DI+ ++ PLT +   M +++    MKKGV
Sbjct: 170 IAYDPFRN-PELEDK-GVKYVS-LEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154
           +I+N ARG+++DT+A+++A  SG I G   DV
Sbjct: 227 IIINTARGSLVDTEALIEALDSGKIFGAGLDV 258

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  111 bits (281), Expect = 7e-30
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L ++R        V +G W     A+     + GK VG VG GRIG+ + +RL+ F   
Sbjct: 109 LLAVLRRIPAADRFVRAGRW--PKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGME 166

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KK 120
           + YH R         +   ++   L  +  + D++VV  P    TR + + + +  +   
Sbjct: 167 IAYHGRRPKP-----DVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPD 221

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVL+ N ARG+++D  A++ A   G IAG   DV+  +P         + N  +TPH++ 
Sbjct: 222 GVLV-NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPA-ALLDLDNVVLTPHIAS 279

Query: 181 TTIDLRYAAG--VKDMLDRYF 199
            T++ R A G  V   L+ +F
Sbjct: 280 ATVETRRAMGDLVLANLEAFF 300

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  105 bits (263), Expect = 6e-27
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 11/160 (6%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFE------- 83
           L GKTV  +G G IG  L +RL+PF   LL   R    + +  L    G   +       
Sbjct: 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGG 216

Query: 84  -EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
            ED+     + DIVV+   LT++T G+ + + ++ MKKG L+VN ARG ++D  AV+ A 
Sbjct: 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAAL 276

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            SGH+ G + DV   +P   D P    PN  +TPHV+G T
Sbjct: 277 ESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVT 316

Length = 347

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  104 bits (261), Expect = 1e-26
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 28/225 (12%)

Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L+L  +FL          W     AY   D  GK VG +G G IG+   +  +     + 
Sbjct: 101 LVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVY 160

Query: 64  -YHDRVKMDPQLEKETG--------------AKF-----EEDLDTML-PKCDIVVVNTPL 102
            Y    +  P+  K+ G              + +     +  L   L    D++VV+ PL
Sbjct: 161 AYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPL 220

Query: 103 TEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           T  T+ +   +    + K+   + N ARG+++DT A+V A  SG I G + DV +P+P P
Sbjct: 221 TPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLP 280

Query: 162 KDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDML----DRYFKGE 202
            DHP    PN  +TPHVS  T +  Y     D+L    +R  KGE
Sbjct: 281 ADHPLWSAPNVIITPHVSWQTQE--YFDRALDVLEENLERLRKGE 323

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  102 bits (256), Expect = 5e-26
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 19/160 (11%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG +G GRIG    +  K     ++ +D   + P    +    F   LD +L K DI+ 
Sbjct: 147 TVGIIGTGRIGLTAAKLFKGLGAKVIGYD---IYPSDAAKDVVTFV-SLDELLKKSDIIS 202

Query: 98  VNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
           ++ P +  K   + +K+ I+KMK G +++N ARG + D +A+++A  SG +AG+  DV N
Sbjct: 203 LHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLN 262

Query: 157 PQPAP--KDHPWRYMPNQA------------MTPHVSGTT 182
            +     KD     + +              +TPH+   T
Sbjct: 263 NEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYT 302

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  100 bits (252), Expect = 2e-25
 Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
           IL L R        V +G+W          +L GKT+G +G G IG +     K      
Sbjct: 105 ILALARRIPEADASVRAGDWK--KGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGV 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y      +   E        + L   L + D ++   P T    G    +    M K 
Sbjct: 163 VAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKD 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +NNARG  +  +A +DA     IA  + DV   +P P + P   +PN  +TPH++G 
Sbjct: 223 AVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGA 282

Query: 182 TID--LRYAAGVKDMLDRYFKGE 202
           T +     A    + L  + KG 
Sbjct: 283 TEEAQENMAEEAAENLLAFLKGG 305

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  100 bits (250), Expect = 3e-25
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
             +L L          V +G W  +     + +   +LEGKT+G +G G +G  + +  +
Sbjct: 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            F   +L         QL           LD +LP+ D + ++ PLTE TR +     +A
Sbjct: 169 AFGMRVLI-------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY--MPNQAM 174
            MK G L++N ARG ++D QA+ DA  SGH+ G + DV + +P    +P     +P   +
Sbjct: 222 LMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIV 281

Query: 175 TPHVS 179
           TPH +
Sbjct: 282 TPHSA 286

Length = 317

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 97.0 bits (242), Expect = 3e-24
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTML 90
            +++GK  G +G G IGK + +  + F   ++Y+          K    ++E   L+ +L
Sbjct: 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG------KNKNEEYERVSLEELL 194

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              DI+ ++ PL EKT+ +     +  +K G +++N  RG I++ + +  A     I   
Sbjct: 195 KTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YA 253

Query: 151 SGDVWNPQPAPKDHPWRYMPNQA---MTPHVSGTTIDLR 186
             DV   +P  K+HP   + N+    +TPH++  + + R
Sbjct: 254 GLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEAR 292

Length = 311

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 94.1 bits (235), Expect = 1e-22
 Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R     + +   G WN    A  ++++ GKT+G VG G IG  L    +     +
Sbjct: 120 IILLLRGIPEKNAKAHRGGWN--KSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRV 177

Query: 63  LYHDRVKMDPQLEKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
            ++D     P      G A+    L+ +L + D+V ++ P T  T+ M   + +A MK G
Sbjct: 178 YFYDIEDKLP-----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPG 232

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPH 177
            +++N +RG ++D  A+ DA  SGH+AG + DV+  +P     P+    R + N  +TPH
Sbjct: 233 AILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292

Query: 178 VSGTT 182
           + G+T
Sbjct: 293 IGGST 297

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)

Query: 14  HHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK 69
           +   +S  W          Y   D+ G T+G  G G +G  + +  +     +LY +   
Sbjct: 121 YRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEH-- 178

Query: 70  MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129
               + +E    FEE    +L + DIV ++ PLTE T+ + + + +A MK    ++N  R
Sbjct: 179 KGASVCREGYTPFEE----VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR 234

Query: 130 GAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTT 182
           G ++D QA++DA  +G IAG + DV   +P  KD+P     + +PN  +TPH++  +
Sbjct: 235 GPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWAS 291

Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 14/184 (7%)

Query: 30  RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
              DL  +T G VG G +G  L++ L+     +L  D     P+ E E    F   L+ +
Sbjct: 110 EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCD----PPRQEAEGDGDFV-SLERI 164

Query: 90  LPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L +CD++ ++TPLT+     TR + D+  +A ++ G  ++N +RGA++D QA+ +A  SG
Sbjct: 165 LEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224

Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED 203
                  DVW  +  P+            TPH++G ++D   R  A +   L R+F G  
Sbjct: 225 EDLDAVLDVWEGE--PQIDLELADLCTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIP 281

Query: 204 FPVQ 207
             V 
Sbjct: 282 ARVS 285

Length = 381

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query: 83  EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
           E++L  +LP+ D++V+  P T  T    D + +A + K   +VN  RGA +D  A+V A 
Sbjct: 187 EDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAAL 246

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            SG + G + DV   +P P   P    PN  +TPH +G
Sbjct: 247 ESGRLGGAALDVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L  K++G +G G IG+ +    K F  N+  + R         +  +    + + ++ K 
Sbjct: 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTR-----SYVNDGISSIYMEPEDIMKKS 174

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D V+++ PLT++TRGM +   ++  +KG+ I+N AR  ++D   +++   + +   Y  D
Sbjct: 175 DFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSD 234

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHV----SGTTIDLRYAAGVKDMLDRYFKGE 202
           VW  +P   +       N  ++PHV    SG  +    A   ++ +  +F+G+
Sbjct: 235 VWWNEPIITETNPD---NVILSPHVAGGMSGEIMQPAVALAFEN-IKNFFEGK 283

Length = 303

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTML 90
           Y  E  T+G +G G +G  + Q L+ +   L    R  K  P ++   G    E+L   L
Sbjct: 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGR---EELSAFL 188

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ ++  + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248

Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQ 207
             DV++ +P P + P W++ P  A+TPHV+  T        +   + +  KGE    Q
Sbjct: 249 MLDVFSREPLPPESPLWQH-PRVAITPHVAAVTRPAEAVEYISRTIAQLEKGERVCGQ 305

Length = 312

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 10/122 (8%)

Query: 38  TVGTVGCGRIGKLLLQRL-KPFNCNLLYHD---RVKMDPQLEKETGAKFEEDLDTMLPKC 93
            V  +G GRIG  + +   K +  +++ +D     K    ++      +++ ++  +   
Sbjct: 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD------YKDTIEEAVEGA 201

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           DIV ++ P T+    +F+ D     KKG + VN ARG+++DT+A++DA  +G I G + D
Sbjct: 202 DIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALD 261

Query: 154 VW 155
            +
Sbjct: 262 TY 263

Length = 332

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +TVG VG G +G+ L  RL+      L  D     P+ ++     F   LD ++ 
Sbjct: 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCD----PPRADRGDEGDFRS-LDELVQ 166

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + DI+  +TPL +    KT  + D+  I  +K G +++N  RGA++D  A++   + G  
Sbjct: 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTIDLRYAAGVKDMLDRY 198
                DVW  +P           N  +       TPH++G T++ + A G   + + Y
Sbjct: 227 LSVVLDVWEGEPE---------LNVELLKKVDIGTPHIAGYTLEGK-ARGTTQVFEAY 274

Length = 378

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGA------------ 80
           L+G+TVG +G GRIG    + + + F  NL+Y+D +    +LEK   A            
Sbjct: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQSTRLEKFVTAYGQFLKANGEQP 221

Query: 81  ---KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
              K    ++ +L + D++ ++  L + T  + +K+R+A MKK  ++VN +RG ++D  A
Sbjct: 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVA 281

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           +V+   +  +     DV+  +P  K      M N  + PH++
Sbjct: 282 LVEHLKANPMFRVGLDVFEDEPYMKPG-LADMKNAVVVPHIA 322

Length = 386

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAKFEEDLDTMLPKCDI 95
           TV  +G GRIG    +    F   +  +D         L       +++ +   +   DI
Sbjct: 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT------YKDSVKEAIKDADI 201

Query: 96  VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155
           + ++ P  +++  +FDK     +KKG ++VN ARGA+++T  ++ A + G + G + D +
Sbjct: 202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 9/153 (5%)

Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
             +L G  VG +G G  G+++   L  F  ++ Y+ R +  P  E +        L+ +L
Sbjct: 133 PRELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTR-KPDAEAKGIRYLP--LNELL 189

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              D++    P   K   +  ++    +  G ++ N + G   + +A+     +     +
Sbjct: 190 KTVDVICTCLP---KNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIF 246

Query: 151 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 183
             D      A  D      PN   T   +G T 
Sbjct: 247 DCDT---AGALGDEELLRYPNVICTNKSAGWTR 276

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General function prediction only]

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 38 TVGTVGCGRIGKLLLQRLK----PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           VG VGCG IGK LL+ ++     F    +Y    +   +LE   G +   D+D ++ + 
Sbjct: 2  KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEV 61

Query: 94 DIVV 97
          D+VV
Sbjct: 62 DLVV 65

Length = 255

>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 39 VGTVGCGRIGKLLLQRLKP--FNCNLLY-HDR-VKMDPQLEKETGAKFEEDLDTMLPKCD 94
          +G VGCG I  L+ + +     N  L   +DR ++    L  +TGAK    +D ++   D
Sbjct: 4  IGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVD 63

Query: 95 IVV 97
          +VV
Sbjct: 64 LVV 66

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN03139	386	formate dehydrogenase; Provisional	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.88
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.77
PLN02494	477	adenosylhomocysteinase	99.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.67
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.67
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.66
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.65
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.55
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.55
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.54
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.52
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.48
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.46
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.45
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.45
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.44
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.42
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.42
PLN02858	1378	fructose-bisphosphate aldolase	99.39
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.38
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.38
PLN02712	667	arogenate dehydrogenase	99.37
PLN02256	304	arogenate dehydrogenase	99.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.36
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.36
PLN02858	1378	fructose-bisphosphate aldolase	99.32
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.32
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.29
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.28
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.28
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.24
PRK05225	487	ketol-acid reductoisomerase; Validated	99.24
PLN02712	667	arogenate dehydrogenase	99.24
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.24
PRK08655	437	prephenate dehydrogenase; Provisional	99.23
PRK07417	279	arogenate dehydrogenase; Reviewed	99.23
PLN02688	266	pyrroline-5-carboxylate reductase	99.2
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.19
PRK08507	275	prephenate dehydrogenase; Validated	99.17
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.15
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.14
PRK06545	359	prephenate dehydrogenase; Validated	99.14
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.12
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.11
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.11
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.1
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.09
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.07
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.07
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	99.07
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.06
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.06
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.03
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.03
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.02
PRK08818	370	prephenate dehydrogenase; Provisional	99.02
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.02
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.02
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.01
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.0
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.98
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.98
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.98
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.98
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.97
PRK07680	273	late competence protein ComER; Validated	98.97
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.93
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.93
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.92
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.92
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.92
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.92
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.9
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.9
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.89
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.88
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.88
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.87
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.86
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.85
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.84
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.84
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.83
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.82
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.82
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.77
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.76
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.74
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.72
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.67
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.67
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.66
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.66
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.63
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.61
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.59
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.58
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.57
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.57
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.57
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.57
PRK06141	314	ornithine cyclodeaminase; Validated	98.55
PLN00203	519	glutamyl-tRNA reductase	98.55
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.54
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.54
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.54
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.54
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.5
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.49
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.48
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.48
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.44
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.42
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.42
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.41
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.4
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.4
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.38
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.38
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.38
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.37
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.37
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.34
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.34
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.33
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.27
PRK07340	304	ornithine cyclodeaminase; Validated	98.27
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.26
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.26
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.23
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.22
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.21
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PRK08618	325	ornithine cyclodeaminase; Validated	98.2
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.2
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.18
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.17
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.17
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.16
PRK06046	326	alanine dehydrogenase; Validated	98.16
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.16
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	98.16
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.14
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.14
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.14
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK08291	330	ectoine utilization protein EutC; Validated	98.1
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	98.1
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK06823	315	ornithine cyclodeaminase; Validated	98.08
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.07
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.07
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.06
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.06
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.06
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.06
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.04
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.02
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.02
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.01
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.01
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK06199	379	ornithine cyclodeaminase; Validated	98.01
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK06407	301	ornithine cyclodeaminase; Provisional	97.98
PRK14982	340	acyl-ACP reductase; Provisional	97.98
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.96
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.95
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
PTZ00117	319	malate dehydrogenase; Provisional	97.94
PRK07589	346	ornithine cyclodeaminase; Validated	97.94
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.93
PRK14031	444	glutamate dehydrogenase; Provisional	97.93
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.93
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.92
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.91
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.91
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.91
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.9
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.87
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.87
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.84
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.83
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.79
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.78
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.77
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.77
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.77
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.77
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.76
PRK14030	445	glutamate dehydrogenase; Provisional	97.76
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.73
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.73
PRK09414	445	glutamate dehydrogenase; Provisional	97.73
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.72
PRK06444	197	prephenate dehydrogenase; Provisional	97.72
PLN02477	410	glutamate dehydrogenase	97.71
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.71
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.7
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.66
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.65
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.64
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.63
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.61
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.61
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.6
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.6
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.59
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.59
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.57
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.56
PRK09496	453	trkA potassium transporter peripheral membrane com	97.55
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.53
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.53
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.51
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.51
PRK06223	307	malate dehydrogenase; Reviewed	97.5
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.5
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.49
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.49
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.48
PRK11579	346	putative oxidoreductase; Provisional	97.47
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.47
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.45
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.44
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.44
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.43
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.42
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.42
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.42
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.41
PRK10206	344	putative oxidoreductase; Provisional	97.41
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.41
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	97.4
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.4
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.4
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.4
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.35
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.34
PRK06270	341	homoserine dehydrogenase; Provisional	97.34
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	97.34
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.33
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.33
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.31
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.31
PRK00779	304	ornithine carbamoyltransferase; Provisional	97.29
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.29
PRK10669	558	putative cation:proton antiport protein; Provision	97.28
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.28
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.28
PLN02342	348	ornithine carbamoyltransferase	97.26
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.25
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	97.25
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.24
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.24
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.24
PRK04148	134	hypothetical protein; Provisional	97.24
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.22
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.21
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.21
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.2
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.19
PLN02527	306	aspartate carbamoyltransferase	97.19
PRK06349	426	homoserine dehydrogenase; Provisional	97.18
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	97.17
PRK02102	331	ornithine carbamoyltransferase; Validated	97.16
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.15
PRK04284	332	ornithine carbamoyltransferase; Provisional	97.15
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	97.15
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.13
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.13
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.12
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.12
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.1
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.07
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.07
PRK05086	312	malate dehydrogenase; Provisional	97.07
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.06
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.04
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	97.03
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.03
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.03
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	97.02
COG5322	351	Predicted dehydrogenase [General function predicti	97.0
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.99
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.99
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.98
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.98
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.97
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.97
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.96
PRK09496	453	trkA potassium transporter peripheral membrane com	96.95
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.91
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.89
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.87
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.87
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.85
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	96.85
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.84
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.83
CHL00194	317	ycf39 Ycf39; Provisional	96.82
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.78
PTZ00325	321	malate dehydrogenase; Provisional	96.76
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.76
PLN02383	344	aspartate semialdehyde dehydrogenase	96.76
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.76
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.75
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.74
PRK06392	326	homoserine dehydrogenase; Provisional	96.73
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.72
PRK10637	457	cysG siroheme synthase; Provisional	96.72
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	96.71
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.7
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.7
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.69
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.69
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.67
PRK05442	326	malate dehydrogenase; Provisional	96.66
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.66
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.65
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.65
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.64
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.62
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.62
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.62
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.62
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.61
PLN02602	350	lactate dehydrogenase	96.61
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.59
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.57
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.55
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	96.54
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.54
COG2344	211	AT-rich DNA-binding protein [General function pred	96.53
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.53
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.52
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.51
PLN00106	323	malate dehydrogenase	96.51
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	96.5
PLN02740	381	Alcohol dehydrogenase-like	96.49
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.48
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.47
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.46
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.46
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	96.46
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	96.45
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.45
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.44
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	96.44
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.42
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.41
PRK08223	287	hypothetical protein; Validated	96.4
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.4
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.37
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.37
PRK08265	261	short chain dehydrogenase; Provisional	96.37
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.36
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.35
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.35
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.34
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.34
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.33
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	96.33
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.31
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.31
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.3
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.3
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.29
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.29
PRK08374	336	homoserine dehydrogenase; Provisional	96.28
COG2910	211	Putative NADH-flavin reductase [General function p	96.28
PRK07877	722	hypothetical protein; Provisional	96.27
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.23
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.22
PRK08328	231	hypothetical protein; Provisional	96.21
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.2
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.2
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.19
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	96.19
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.19
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.17
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	96.16
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	96.15
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.15
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.14
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.14
PRK12862	763	malic enzyme; Reviewed	96.13
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	96.12
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.12
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.11
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.09
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.09
PLN02514	357	cinnamyl-alcohol dehydrogenase	96.07
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
PRK07411	390	hypothetical protein; Validated	96.03
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.03
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.02
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.01
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	96.0
PRK15076	431	alpha-galactosidase; Provisional	95.99
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.99
PLN03209	576	translocon at the inner envelope of chloroplast su	95.98
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	95.98
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.98
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	95.97
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.96
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.96
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.96
PRK08324	681	short chain dehydrogenase; Validated	95.92
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.9
PRK10083	339	putative oxidoreductase; Provisional	95.9
PLN02827	378	Alcohol dehydrogenase-like	95.89
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	95.87
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	95.87
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.86
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	95.85
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	95.85
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.85
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	95.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.78
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.77
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.77
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	95.76
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	95.76
PRK14805	302	ornithine carbamoyltransferase; Provisional	95.75
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	95.75
PRK07806	248	short chain dehydrogenase; Provisional	95.72
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	95.71
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.7
PRK12861	764	malic enzyme; Reviewed	95.7
PLN02214	342	cinnamoyl-CoA reductase	95.69
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.67
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.64
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.63
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.63
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.62
PLN02427	386	UDP-apiose/xylose synthase	95.62
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.6
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.6
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.6
PRK06182	273	short chain dehydrogenase; Validated	95.59
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.59
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.58
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.54
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.52
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.51
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.51
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.5
PRK05866	293	short chain dehydrogenase; Provisional	95.49
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.47
cd08252	336	AL_MDR Arginate lyase and other MDR family members	95.46

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-57  Score=398.99  Aligned_cols=221  Identities=89%  Similarity=1.463  Sum_probs=205.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      |+||++.|++.++++++++|.|........+.+|.||||||||+|+||+.+|++|++||++|++||++....+.....|+
T Consensus       164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            58999999999999999999997532223467999999999999999999999999999999999997655555556677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||++||+++|+++|++|+|.||++|||++||+
T Consensus       244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl  323 (386)
T PLN03139        244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA  323 (386)
T ss_pred             eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            76679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  221 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~~~  221 (221)
                      |.+||||.+||+++|||+||.|.+  .++...+.+|+.+|++|+++.++|+|+..++||++|+
T Consensus       324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~  386 (386)
T PLN03139        324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ  386 (386)
T ss_pred             CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence            999999999999999999999998  7778889999999999999999999999999999996

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=7.5e-57  Score=391.29  Aligned_cols=201  Identities=35%  Similarity=0.607  Sum_probs=185.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|+++.+++++++|.|.+..  ..+.+|+||||||||+|+||+.+|+++++|||+|++||+... .+.....++
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~  185 (324)
T COG0111         109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGV  185 (324)
T ss_pred             HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccc
Confidence            58999999999999999999999732  456799999999999999999999999999999999999432 223344556


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl  265 (324)
T COG0111         186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL  265 (324)
T ss_pred             eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      |.+||||++|||++|||+||+|.|  .++...+.+|+.+|++|++.
T Consensus       266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~  311 (324)
T COG0111         266 PADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV  311 (324)
T ss_pred             CCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999998  78888899999999999974

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-55  Score=388.25  Aligned_cols=221  Identities=50%  Similarity=0.936  Sum_probs=203.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      |+||++.|++..+++++++|.|........+.+|.||||||||+|+||+.+|++|++|||+|++||++....+.....++
T Consensus       157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence            58999999999999999999998643223467899999999999999999999999999999999997644444455677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus       237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl  316 (385)
T PRK07574        237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA  316 (385)
T ss_pred             eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence            66679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCC----CCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP----QYR  221 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~----~~~  221 (221)
                      |.+||||++||+++|||+||+|.+  .++...+.+|+.+|++|+++...++|+..+++||    ||+
T Consensus       317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  383 (385)
T PRK07574        317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAGTGAHSYT  383 (385)
T ss_pred             CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccCccccccc
Confidence            999999999999999999999999  6777889999999999999988999999999998    774

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.7e-53  Score=371.14  Aligned_cols=207  Identities=32%  Similarity=0.509  Sum_probs=184.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHHHhc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET   78 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~   78 (221)
                      +|||++.|++...++.+++|.|.... ....+.+|.|||+||||+|+||+.+|++++ +|||+|++||+... .+.....
T Consensus       109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~  187 (323)
T PRK15409        109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERF  187 (323)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhc
Confidence            58999999999999999999997431 112367999999999999999999999998 99999999998642 2333445


Q ss_pred             CceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus        79 g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      ++... ++++++++||+|++|+|+|++|+++++++.|+.||+|++|||++||++||++||+++|++|+|.||+||||++|
T Consensus       188 ~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E  266 (323)
T PRK15409        188 NARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE  266 (323)
T ss_pred             CcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence            66654 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          159 PAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       159 p~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                      |++.++|||++||+++|||+||.|.|  .++...+.+|+.+|++|+++  .|.|+
T Consensus       267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn  319 (323)
T PRK15409        267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE--KNCVN  319 (323)
T ss_pred             CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence            99999999999999999999999999  67778899999999999864  45554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=9.1e-53  Score=366.05  Aligned_cols=200  Identities=29%  Similarity=0.489  Sum_probs=179.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      ++||+++|++...++.+++|.|.....    ...+.+|.||||||||+|+||+.+|+++++|||+|++||+.... .   
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~---  184 (317)
T PRK06487        109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A---  184 (317)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence            579999999999999999999975421    12346899999999999999999999999999999999985321 1   


Q ss_pred             hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                        .... .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus       185 --~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  261 (317)
T PRK06487        185 --RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS  261 (317)
T ss_pred             --cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence              1222 4899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC--CCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCc
Q 027577          157 PQPAPKDHPWRY--MPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQ  207 (221)
Q Consensus       157 ~ep~~~~~~l~~--~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~  207 (221)
                      +||++.++|||.  +||+++|||+||+|.+  .++...+.+|+.+|++|++++.+
T Consensus       262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~v  316 (317)
T PRK06487        262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVV  316 (317)
T ss_pred             CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            999999999995  8999999999999998  67788899999999999876543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.5e-52  Score=364.19  Aligned_cols=202  Identities=40%  Similarity=0.677  Sum_probs=185.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc--ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET   78 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   78 (221)
                      +|||++.|++.++++.+++|.|....  ....+.+++|||+||||+|+||+++|+++++|||+|++||+++. ++..+..
T Consensus       109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~  187 (324)
T COG1052         109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL  187 (324)
T ss_pred             HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence            58999999999999999999998753  22456789999999999999999999999999999999999875 5555566


Q ss_pred             CceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus        79 g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      +..+++ +++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|.||++|||++|
T Consensus       188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E  266 (324)
T COG1052         188 GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE  266 (324)
T ss_pred             Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence            677774 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC---eEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          159 PAPKDHPWRYMPN---QAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       159 p~~~~~~l~~~~n---~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      |.+.++||+.++|   +++|||+|++|.|  .++...+.+|+.+|++|+..
T Consensus       267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~  317 (324)
T COG1052         267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVP  317 (324)
T ss_pred             CCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9988999998877   9999999999999  66777899999999998864

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-52  Score=362.31  Aligned_cols=197  Identities=23%  Similarity=0.405  Sum_probs=177.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-c---CcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-~---~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      +|||+++|++..+++.+++|.|..... .   ..+.+|.||||||||+|+||+.+|+++++|||+|++||++....    
T Consensus       106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----  181 (311)
T PRK08410        106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----  181 (311)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence            589999999999999999999975321 1   12468999999999999999999999999999999999864221    


Q ss_pred             hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ..++.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|. |+||||+
T Consensus       182 ~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        182 NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            224444 48999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CCCCCCCCCCCCC---CCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577          157 PQPAPKDHPWRYM---PNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       157 ~ep~~~~~~l~~~---~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~  203 (221)
                      +||++.++|||.+   |||++|||+||+|.+  .++...+.+|+.+|++|++
T Consensus       260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999987   899999999999999  6777889999999999864

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=9.7e-52  Score=358.51  Aligned_cols=208  Identities=24%  Similarity=0.348  Sum_probs=186.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++....+.+++|.|...    ...++.|+||||||+|+||+.+|++|++|||+|++||++.........  +
T Consensus       105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~  178 (312)
T PRK15469        105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--F  178 (312)
T ss_pred             HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--e
Confidence            4799999999999899999999743    245799999999999999999999999999999999986533211111  1


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||++||++||+++|+++|++|+|.||++|||++||+
T Consensus       179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl  258 (312)
T PRK15469        179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL  258 (312)
T ss_pred             cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence            12358999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCccccccCCcc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL  216 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~  216 (221)
                      |.++|||++||+++|||+||+|.+.++...+.+|+++|.+|++  +.|.|+++.+|
T Consensus       259 ~~~~pl~~~~nvi~TPHiag~t~~~~~~~~~~~n~~~~~~g~~--~~~~V~~~~gY  312 (312)
T PRK15469        259 PPESPLWQHPRVAITPHVAAVTRPAEAVEYISRTIAQLEKGER--VCGQVDRARGY  312 (312)
T ss_pred             CCCChhhcCCCeEECCcCCCCcCHHHHHHHHHHHHHHHHcCCC--CcccCCcccCC
Confidence            9999999999999999999999987778888999999999997  58889888776

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3e-51  Score=355.99  Aligned_cols=197  Identities=25%  Similarity=0.441  Sum_probs=175.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      ++||+++|++...++.+++|.|.....    ...+.+|.||||||||+|.||+.+|+++++|||+|++||+.... .   
T Consensus       108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~---  183 (314)
T PRK06932        108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V---  183 (314)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence            579999999999999999999974321    11346899999999999999999999999999999999975321 1   


Q ss_pred             hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                       .... ..++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||+
T Consensus       184 -~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~  261 (314)
T PRK06932        184 -CREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV  261 (314)
T ss_pred             -cccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence             1111 35899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC----CCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577          157 PQPAPKDHPWR----YMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       157 ~ep~~~~~~l~----~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~  203 (221)
                      +||++.++|||    ++|||++|||+||+|.+  .++...+.+|+.+|++|++
T Consensus       262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999998    48999999999999998  6777889999999998863

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-51  Score=365.37  Aligned_cols=215  Identities=27%  Similarity=0.457  Sum_probs=188.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|++..+++.+++|.|.+..  ..+.+|.||||||||+|+||+.+|+++++|||+|++||++....    ..++
T Consensus       118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~  191 (409)
T PRK11790        118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA  191 (409)
T ss_pred             HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence            58999999999999999999998642  34679999999999999999999999999999999999854211    1234


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus       192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~  271 (409)
T PRK11790        192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK  271 (409)
T ss_pred             eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCcc-CCCCC
Q 027577          161 PK----DHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGEL-APQYR  221 (221)
Q Consensus       161 ~~----~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~~-~~~~~  221 (221)
                      +.    ++|||.+||+++|||+||+|.|  .++...+.+|+.+|++|+++ +.+|.......+ .+.||
T Consensus       272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~~~~~~~~~~~~~r  340 (409)
T PRK11790        272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHR  340 (409)
T ss_pred             CccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcceeccccccCCCCCCce
Confidence            86    4799999999999999999998  67778899999999998876 777765555543 24443

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.1e-50  Score=355.10  Aligned_cols=206  Identities=34%  Similarity=0.567  Sum_probs=183.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (221)
                      ++||+++|++..+++.+++|.|.....     ...+.+|.||||||||+|+||+.+|+++++||++|++||++... ...
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  188 (333)
T PRK13243        110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE  188 (333)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence            589999999999999999999974311     11357899999999999999999999999999999999987533 233


Q ss_pred             HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|+|.||+||||
T Consensus       189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~  267 (333)
T PRK13243        189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF  267 (333)
T ss_pred             HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence            3445554 489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       156 ~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                      ++||++ ++|||++||+++|||+||+|.+  .++...+.+|+.+|++|+++  .|.|+
T Consensus       268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~  322 (333)
T PRK13243        268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP--PTLVN  322 (333)
T ss_pred             CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC--CcccC
Confidence            999987 8999999999999999999998  67778899999999999864  34444

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1e-50  Score=356.90  Aligned_cols=201  Identities=32%  Similarity=0.392  Sum_probs=179.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~----   76 (221)
                      ++||+++|++....+.+++|.|...    .+.+|.||||||||+|.||+.+|+++++|||+|++||++........    
T Consensus       128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~  203 (347)
T PLN02928        128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP  203 (347)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence            4799999999999999999999642    35689999999999999999999999999999999998642211110    


Q ss_pred             -----h---cCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        77 -----~---~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                           .   ... ...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.
T Consensus       204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~  282 (347)
T PLN02928        204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG  282 (347)
T ss_pred             cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence                 0   011 3458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCC
Q 027577          149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPV  206 (221)
Q Consensus       149 ~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~  206 (221)
                      ||+||||++||++.++|||++||+++|||+||+|.+  .++...+.+|+.+|++|+++..
T Consensus       283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  342 (347)
T PLN02928        283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG  342 (347)
T ss_pred             EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence            999999999999999999999999999999999998  6777889999999999998643

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=3.6e-50  Score=356.77  Aligned_cols=207  Identities=23%  Similarity=0.300  Sum_probs=179.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhH--HH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~--~~   76 (221)
                      +|||++.|++..+++.+++|.|..+. ....+.+|.|+||||||+|+||+.+|++++ +|||+|++||++......  ..
T Consensus       129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~  208 (386)
T PLN02306        129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT  208 (386)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence            58999999999999999999985321 112467899999999999999999999985 999999999986532110  01


Q ss_pred             hcC------------ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        77 ~~g------------~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ..+            +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++
T Consensus       209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            111            12235899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCcc
Q 027577          145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQN  208 (221)
Q Consensus       145 g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n  208 (221)
                      |+|.||+||||++||++ ++|||++|||++|||+||+|.+  .++...+.+|+.+|++|+++ +.+|
T Consensus       289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999975 5789999999999999999988  67777899999999999986 5555

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=1.5e-51  Score=331.46  Aligned_cols=177  Identities=39%  Similarity=0.673  Sum_probs=155.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ||||++.|++..+++++++|.|.. .....+.+|.|+||||||+|+||+.+|+++++|||+|++||++..........++
T Consensus         2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            589999999999999999999921 1234578999999999999999999999999999999999997644333455566


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||++||++||+++|++|++.||++|||++||+
T Consensus        81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            54 59999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVS  179 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a  179 (221)
                      +.++|||++||+++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            9999999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=6.7e-50  Score=368.64  Aligned_cols=211  Identities=33%  Similarity=0.548  Sum_probs=189.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +|||+++|+++.+++.+++|.|.+..  ..+.+|.||||||||+|+||+.+|++|++|||+|++||++. ..+.....++
T Consensus       105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  181 (525)
T TIGR01327       105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV  181 (525)
T ss_pred             HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999997542  34678999999999999999999999999999999999853 3344455677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ...+++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  261 (525)
T TIGR01327       182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP  261 (525)
T ss_pred             EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence            76678999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGE  215 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~  215 (221)
                       .++|||++|||++|||+|++|.+  .++...+.+|+.+|++|+++ +.+|.+....+
T Consensus       262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~  318 (525)
T TIGR01327       262 -TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD  318 (525)
T ss_pred             -CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence             58999999999999999999999  67778899999999999976 66777665444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-49  Score=364.56  Aligned_cols=210  Identities=33%  Similarity=0.558  Sum_probs=189.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +|||+++|+++.+++.+++|.|....  ..+.+|.||||||||+|+||+.+|+++++|||+|++||++. ..+.....++
T Consensus       107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  183 (526)
T PRK13581        107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV  183 (526)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999997542  34678999999999999999999999999999999999864 3344455677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  262 (526)
T PRK13581        184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP  262 (526)
T ss_pred             EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence            766 8999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccCCc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKAGE  215 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~~~  215 (221)
                      + ++|||++||+++|||+|++|.+  .++...+.+|+.+|++|+++ +.+|......+
T Consensus       263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~  319 (526)
T PRK13581        263 T-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITAE  319 (526)
T ss_pred             C-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCchh
Confidence            6 8999999999999999999999  67778899999999999976 66666655444

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-49  Score=335.96  Aligned_cols=209  Identities=33%  Similarity=0.527  Sum_probs=191.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++|++++|+++++...+++|+|.+..  +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.++..|+
T Consensus       113 gli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv  189 (406)
T KOG0068|consen  113 GLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV  189 (406)
T ss_pred             HHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence            47999999999999999999998764  56889999999999999999999999999999999999843 5667778899


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      +.+ +++|+++.||+|.+|+|++|+|+++++.+.|+.||+|..+||++||++||+.||.++|++|++.||++|||+.||+
T Consensus       190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp  268 (406)
T KOG0068|consen  190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP  268 (406)
T ss_pred             eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence            876 8999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CC--CCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccC
Q 027577          161 PK--DHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKA  213 (221)
Q Consensus       161 ~~--~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~  213 (221)
                      ..  ++.|.++|||++|||+|+.|.|  .+++..+.+++..|.+|.....+|.....
T Consensus       269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna~~v~  325 (406)
T KOG0068|consen  269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNAPEVA  325 (406)
T ss_pred             ccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceechhhhh
Confidence            65  7889999999999999999999  77777889999999999555666665543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-47  Score=330.40  Aligned_cols=197  Identities=24%  Similarity=0.420  Sum_probs=174.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|++...++.+++|.|...    .+.+|.||||||||+|+||+.+|+++++||++|++||++....      ++
T Consensus        91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~  160 (303)
T PRK06436         91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI  160 (303)
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence            5899999999999999999999853    3468999999999999999999999999999999999864321      22


Q ss_pred             e-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        81 ~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      . ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|.++|++|++.+|++|||++||
T Consensus       161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP  240 (303)
T PRK06436        161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP  240 (303)
T ss_pred             ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence            2 145899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCc-CCHH--HHHHHHHHHHHHHHHcCCCCCCccccccC
Q 027577          160 APKDHPWRYMPNQAMTPHVSG-TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKA  213 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~-~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~  213 (221)
                      ++.++   .+||+++|||++| .|.+  .++...+.+|+.+|++|++   .|.|+++
T Consensus       241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~---~~~V~~~  291 (303)
T PRK06436        241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP---KNIVRKE  291 (303)
T ss_pred             CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC---CceEchH
Confidence            88775   6899999999865 7777  5666778999999999985   4666554

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.5e-47  Score=330.45  Aligned_cols=205  Identities=43%  Similarity=0.731  Sum_probs=188.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~  206 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA  206 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence            46899999999999999999995444445678999999999999999999999999999888888888777777766666


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++.++|+|++|+|+|++|+++++++.+..||+|++|||++||.++|++++.++|++|+|.++++|||++|| 
T Consensus       207 ~~-~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-  284 (336)
T KOG0069|consen  207 EF-VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-  284 (336)
T ss_pred             cc-cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence            64 4899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQ  207 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~  207 (221)
                      +.++||+.++|+++|||+|+.|.+  .+++..+..|+.+++.|+++ +++
T Consensus       285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~  334 (336)
T KOG0069|consen  285 PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV  334 (336)
T ss_pred             CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence            889999999999999999999999  77788899999999999987 444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-47  Score=333.80  Aligned_cols=199  Identities=20%  Similarity=0.277  Sum_probs=175.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|.+.. ...+.+|.|++|||||+|.||+++|++|+++|++|++||+++.....    ..
T Consensus       112 ~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~  186 (330)
T PRK12480        112 SIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL  186 (330)
T ss_pred             HHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence            58999999999999999999875432 12357899999999999999999999999999999999987532211    12


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|.+++|.++++++.++.||+|++|||++||.+||+++|+++|++|+|.||+||||++||+
T Consensus       187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  266 (330)
T PRK12480        187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA  266 (330)
T ss_pred             hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence            33458999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          161 P-------------KDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       161 ~-------------~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      +             ..+|||++|||++|||+|++|.+  .++...+.+|+.+|++|++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~  325 (330)
T PRK12480        267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC  325 (330)
T ss_pred             cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2             12479999999999999999999  77788899999999999874

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.7e-45  Score=322.37  Aligned_cols=200  Identities=23%  Similarity=0.334  Sum_probs=176.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHH-ccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++...++.+++|.|.+.. ...+.+|.|+||||||+|.||+++|++| +++|++|++||++....  . ...
T Consensus       112 ~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~  187 (332)
T PRK08605        112 TQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATY  187 (332)
T ss_pred             HHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-Hhh
Confidence            47999999999999999999885432 1236789999999999999999999999 78999999999865322  1 123


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +....++++++++||+|++|+|.++.|+++++.+.++.||+|++|||++||.++|+++|.++|++|+|.||++|||+.||
T Consensus       188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep  267 (332)
T PRK08605        188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER  267 (332)
T ss_pred             ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             --CCCCC-----------CCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          160 --APKDH-----------PWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       160 --~~~~~-----------~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                        +|.++           |||++||+++|||+|++|.|  .++...+.+|+.+|++|++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~  327 (332)
T PRK08605        268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT  327 (332)
T ss_pred             CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence              35554           49999999999999999999  77778899999999999865

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=3.9e-42  Score=303.82  Aligned_cols=165  Identities=27%  Similarity=0.478  Sum_probs=145.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh----hh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~----t~  107 (221)
                      .+|.||||||||+|+||+.+|+++++|||+|++||+.....    .... ...++++++++||+|++|+|+|++    |.
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            47999999999999999999999999999999999743211    1112 245899999999999999999996    99


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--H
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--L  185 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~  185 (221)
                      ++++++.|+.||+|+++||+|||++||++||+++|++|++.+|+||||++||. .+++|+..++ ++||||||+|.|  .
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~  264 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKA  264 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999996 4667887665 999999999999  5


Q ss_pred             HHHHHHHHHHHHHHcCCCC
Q 027577          186 RYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~  204 (221)
                      +....+.+|+.+|+ |.+.
T Consensus       265 ~~~~~~~~~l~~~~-~~~~  282 (378)
T PRK15438        265 RGTTQVFEAYSKFI-GHEQ  282 (378)
T ss_pred             HHHHHHHHHHHHHH-cCcc
Confidence            56677899999998 4443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=7.7e-42  Score=302.66  Aligned_cols=166  Identities=31%  Similarity=0.522  Sum_probs=148.8

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCCh----hh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT  106 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~----~t  106 (221)
                      +.+|.||||||||+|+||+.+|++++++|++|++||+.....    . +.....++++++++||+|++|+|+|+    .|
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T  185 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT  185 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence            457999999999999999999999999999999999853211    1 11224589999999999999999999    59


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--  184 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--  184 (221)
                      +++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++|||.. |+++|||+||+|.|  
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~  263 (381)
T PRK00257        186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK  263 (381)
T ss_pred             cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999995 56789985 99999999999999  


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 027577          185 LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       185 ~~~~~~~~~~~~~~~~g~~  203 (221)
                      .+....+.+|+.+|+.+.+
T Consensus       264 ~r~~~~~~~nl~~~~~~~~  282 (381)
T PRK00257        264 ARGTAQIYQALCRFFGIPA  282 (381)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            6667778999999998864

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.88  E-value=4e-23  Score=178.04  Aligned_cols=204  Identities=25%  Similarity=0.343  Sum_probs=164.9

Q ss_pred             cHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577            2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus         2 ~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      .||.++|+-....+.+++|.|.....     ........|.+.|++|+|..|++++.++++||+.|+.||+.. ..-..+
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence            47889999989999999999863321     122346789999999999999999999999999999999853 333445


Q ss_pred             hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      .+|...+.++++++.++|.+++|+.+++.++++++.-.++.|+.|+.++|++||.++|+++|.++|+.|++.+++     
T Consensus       218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-----  292 (435)
T KOG0067|consen  218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-----  292 (435)
T ss_pred             hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence            667777778999999999999999999999999999999999999999999999999999999999999999887     


Q ss_pred             CCCC-CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccccC
Q 027577          157 PQPA-PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVKA  213 (221)
Q Consensus       157 ~ep~-~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~~  213 (221)
                        |. -...||.+.||.++|||.+++++.  .++.+.....+++-+.|+-. ...|-|+++
T Consensus       293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE  351 (435)
T KOG0067|consen  293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKE  351 (435)
T ss_pred             --CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhh
Confidence              21 134578899999999999999877  34444444555555566533 344444443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.77  E-value=3.1e-18  Score=154.70  Aligned_cols=121  Identities=19%  Similarity=0.256  Sum_probs=102.5

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +..+.|++|+|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|++|+.    +.+++
T Consensus       249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI  323 (476)
T PTZ00075        249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDII  323 (476)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----ccccc
Confidence            34799999999999999999999999999999999876544433444577654 79999999999999863    67899


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD  163 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~  163 (221)
                      +.+.|+.||+|++|||++|+   |++.+.++|+.+.    ++||++.||....
T Consensus       324 ~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~  369 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR  369 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence            99999999999999999999   7888888888753    6899999987643

>PLN02494 adenosylhomocysteinase

Probab=99.71  E-value=4.1e-17  Score=147.15  Aligned_cols=121  Identities=18%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+.|++|+|+|+|.||+.+|++++.+|++|+++++++.....+...|+... +++++++.+|+|+.+.    .+.++++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tT----Gt~~vI~  324 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTT----GNKDIIM  324 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECC----CCccchH
Confidence            3579999999999999999999999999999999987654444555676654 7899999999999754    3678899


Q ss_pred             HHHHhcCCCCCEEEEcCC-CCccCHHHHHHH--HHhCCceEEEeeCCCCC
Q 027577          112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~sr-g~~vd~~al~~a--l~~g~i~~a~lDV~~~e  158 (221)
                      .+.|+.||+|++++|++| +..||+++|.++  ++.+.+. +.+|+|+.|
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            999999999999999999 689999999998  8999998 999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.67  E-value=4.3e-16  Score=139.26  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=104.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+.|++|+|+|+|.||+.+|+.++.+|++|+++++++.....+...|+... +++++++.+|+|+.++.    +.++++
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~  265 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIR  265 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHH
Confidence            3589999999999999999999999999999999887654445555677554 77899999999988764    567889


Q ss_pred             HHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 027577          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      .+.+..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus       266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            899999999999999999998 9999999998887777789998873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.67  E-value=1.1e-16  Score=126.85  Aligned_cols=115  Identities=15%  Similarity=0.277  Sum_probs=94.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch-HHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~-~~~~  115 (221)
                      ++|||||+|.||+.+|++|...|++|.+||+++...+.+.+.++...+++.|+++++|+|++|+|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999987666666677888889999999999999999998777777653 2277


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ..+++|.++||++...+-....+.+.+.+..+.  ++|
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD  117 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence            889999999999999999999999999988776  677

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.66  E-value=4.5e-16  Score=132.95  Aligned_cols=115  Identities=14%  Similarity=0.204  Sum_probs=105.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~  113 (221)
                      ++||+||+|.||.++|++|...|+.|.+|||++.+ .+.....|.....+..++++++|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            48999999999999999999999999999998766 5666677888888999999999999999999999888874  57


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      .++.+++|+++||+|..++.....+.+.++...+.  .+|
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD  118 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD  118 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence            88999999999999999999999999999999988  777

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.65  E-value=5.9e-16  Score=133.70  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=81.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..|.||||||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++|+|+ +++.++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            4699999999999999999999999999999999876544455566677654 899999999999999996 67789999


Q ss_pred             HHHHhcCCCCCEEEE
Q 027577          112 KDRIAKMKKGVLIVN  126 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn  126 (221)
                      .+.+..||+|++|+-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998864

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.56  E-value=3.3e-14  Score=123.06  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=98.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....++++++++   +|+|++|+|..+.++.+++ +
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence            47999999999999999999999999999998655555566777777889998876   6999999997767777764 5


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      .+..+++|.++||+++..+.+..++.+.+.+..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            67788999999999999999999999999988776  677

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.55  E-value=2.6e-14  Score=123.54  Aligned_cols=116  Identities=13%  Similarity=0.167  Sum_probs=99.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|.||.++|+.|...|++|.+||+++...+.+.+.++....++.+++++||+|++|+|.....+.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            489999999999999999999999999999987665556566776677889999999999999997766666653  346


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +..++++.++||++++.+...+.+.+.+.+..+.  ++|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7778999999999999999999999999998877  5663

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.55  E-value=3e-14  Score=122.84  Aligned_cols=122  Identities=18%  Similarity=0.243  Sum_probs=99.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|.||..+|+.+...|++|.+||+++...+.+.+.++....++++++++||+|++|+|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999976555555566777677899999999999999998777776653  346


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      +..+++++++||+++..+...+++.+.+.+.++...-..|+..+
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~  126 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGE  126 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCH
Confidence            77889999999999999988889999998877663333344433

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.54  E-value=2.2e-14  Score=123.48  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc-h-HHHH
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI  115 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i-~-~~~~  115 (221)
                      +|||||+|.||..+|+.|...|++|.+||+++...+.+...|.....+.++++++||+|++|+|.++..+.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            5899999999999999999999999999998755555666677666788999999999999999877776664 2 3466


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ..+++++++||+++..+.+.+++.+.+++..+.  .+|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~  116 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD  116 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence            788999999999999998889999999987766  455

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.52  E-value=1.1e-13  Score=119.94  Aligned_cols=115  Identities=20%  Similarity=0.246  Sum_probs=98.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++|||||+|.||+.+|+.|...|++|.+||+++...+.+.+.|+....+++++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            48999999999999999999999999999998755555666788777789888875   699999999776776666 35


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      ....++++.++||++++.......+.+.+++.++.  ++|.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            67789999999999999999999999999998887  5674

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.48  E-value=2.2e-13  Score=107.00  Aligned_cols=104  Identities=21%  Similarity=0.355  Sum_probs=76.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+.||++.|+|||.+|+.+|+.|+++|.+|++++..|...-.+...|++.. +++++++++|+++.++.    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence            4689999999999999999999999999999999987654445556688765 89999999999998876    356788


Q ss_pred             HHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~  140 (221)
                      .+.|..||+|+++.|++.-.. +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999987654 56555543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.46  E-value=3.2e-13  Score=123.70  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=101.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCC---CCEEEEeCCCChhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT  106 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~ell~~---aDvVv~~~p~~~~t  106 (221)
                      .+|||||+|.||+.+|++|...|++|.+|||++...+.+.+.    |..   ...+++++++.   +|+|++|+|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            369999999999999999999999999999986554443331    432   45688898876   99999999999888


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +.++ ...+..+++|.++||++....-+...+.+.+++..+.....=|...++
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            8887 467888999999999999999999999999999999855555665544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.45  E-value=3.5e-13  Score=116.09  Aligned_cols=96  Identities=21%  Similarity=0.339  Sum_probs=79.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +.+++|++++|+|+|.||+.+|+.|+.+|++|.+++|++.....+...+...  ..+++++++++|+|++|+|.     .
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~  220 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L  220 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence            3579999999999999999999999999999999999764433344445443  24677889999999999994     3


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +++++.++.|++++++||++...
T Consensus       221 ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       221 VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HhCHHHHhcCCCCeEEEEeCcCC
Confidence            67788899999999999998743

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.45  E-value=4.6e-13  Score=120.49  Aligned_cols=127  Identities=17%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             hCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH
Q 027577            8 RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD   87 (221)
Q Consensus         8 R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~   87 (221)
                      |.++.......++.|+.-. ......+.|++|+|+|+|.||+.+|+.++.+|++|+++|+++.....+...|+.. .+++
T Consensus       185 K~~~dn~~gt~~s~~~ai~-rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~  262 (425)
T PRK05476        185 KSKFDNRYGTGESLLDGIK-RATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTME  262 (425)
T ss_pred             CccccccHHHHhhhHHHHH-HhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHH
Confidence            3333333445566664211 0113458999999999999999999999999999999998765544445557664 4789


Q ss_pred             hhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~  140 (221)
                      ++++.+|+|+.++.    +.++++.+.+..||+|++++|+++... +|.++|.+
T Consensus       263 eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        263 EAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999999988764    456788899999999999999999876 77777754

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.44  E-value=7.3e-13  Score=114.41  Aligned_cols=115  Identities=17%  Similarity=0.106  Sum_probs=96.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|+||..+|+.|...|++|.+||+++. .+.+...|+....+..+++++||+|++|+|..+..+.++.  ...
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            4799999999999999999999999999998763 3445556777777899999999999999998777766653  235


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +..+++|.++|+++...+-....+.+.+.+..+.  ++|.
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            6678999999999999999999999999888776  6663

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.42  E-value=5.2e-13  Score=113.34  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=104.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~-  111 (221)
                      .-+.++||+||+|.||..++..|...|++|++|||+....+.+.+.|....+++.|+.+.||+||.++|.....+.++. 
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence            3468899999999999999999999999999999988777788888999889999999999999999998888777763 


Q ss_pred             -HHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          112 -KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       112 -~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                       ...++.++++... |+.+.-.+.-...|.++++.....  ++|
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence             3467777788777 999999998899999999998777  777

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.42  E-value=1.9e-12  Score=112.07  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=93.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCCCCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el---l~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.+.....+++++   ++++|+|++++|.. .+..++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            47999999999999999999999999999998765555555666555566654   45689999999966 666666 45


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      ....+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            67788999999999999999999999999888776  5664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.39  E-value=2e-12  Score=130.69  Aligned_cols=118  Identities=15%  Similarity=0.099  Sum_probs=104.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc--hH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK  112 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i--~~  112 (221)
                      +.++||+||+|.||..||++|...|++|.+||+++...+.+.+.|+...+++.+++++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            4678999999999999999999999999999998766666777788888899999999999999999888888776  34


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC--ceEEEeeC
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDV  154 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~--i~~a~lDV  154 (221)
                      ..+..+++|.++|++|...+-....+.+.+.+..  +.  ++|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999998877  55  6774

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.38  E-value=1.8e-12  Score=113.12  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=78.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ..|+|++|||||+|+||+++|+.|+.+|++|++++++. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            46899999999999999999999999999999887653 33444556677655 899999999999999996554 6666


Q ss_pred             hHHHHhcCCCCCEEEEcCCC
Q 027577          111 DKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg  130 (221)
                      .++.+..|++|++| ..+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67788899999988 56666

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.38  E-value=2.3e-12  Score=117.74  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=99.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---CCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~ell~---~aDvVv~~~p~~~~t~  107 (221)
                      .+|||||+|.||.++|++|...|++|.+|||++...+.+.+.    |  +....+++++++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999987554433322    4  345678999886   5899999999888888


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      .++ ++.+..+++|.+|||++.+...+...+.+.+.+..+.....=|...+
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~  131 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE  131 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence            877 45778899999999999999999999999999999884433345443

>PLN02712 arogenate dehydrogenase

Probab=99.37  E-value=2.9e-12  Score=121.65  Aligned_cols=115  Identities=14%  Similarity=0.202  Sum_probs=90.6

Q ss_pred             cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhh
Q 027577           28 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKT  106 (221)
Q Consensus        28 ~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t  106 (221)
                      ...+.++.+++|||||+|.||+.+|+.++.+|++|++||++.. .+.+.+.|+....++++++. ++|+|++|+| ...+
T Consensus       361 ~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~  438 (667)
T PLN02712        361 SGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILST  438 (667)
T ss_pred             hhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHH
Confidence            3456788999999999999999999999999999999998743 24455677776678888875 5999999999 4566


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ..++.+-....|++|++++|++.++-...+.+.+.+..
T Consensus       439 ~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        439 EKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            66676544446899999999999885555555555544

>PLN02256 arogenate dehydrogenase

Probab=99.37  E-value=1.1e-11  Score=107.60  Aligned_cols=109  Identities=18%  Similarity=0.292  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      -.+++|+|||+|.||+++|+.++..|++|++||++. ..+.+...|+....+.++++ .++|+|++|+|. ..+..++.+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~  111 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS  111 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence            357899999999999999999999999999999875 33445566776667888876 479999999994 345555544


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      -....++++++|+|++..+-+..+++.+.+..
T Consensus       112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            32566899999999999765556666666544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.36  E-value=7.7e-12  Score=112.34  Aligned_cols=105  Identities=17%  Similarity=0.287  Sum_probs=89.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +..+.|++|+|+|+|.||+.+++.++.+|++|+++|+++...+.+...|+... ++++.++.+|+|+.++.    +..++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i  271 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII  271 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence            34689999999999999999999999999999999988766777778888654 67888899999998765    34568


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~-vd~~al~~  140 (221)
                      +...+..||+|++++|+++..+ +|..+|..
T Consensus       272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            8888999999999999999876 77777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.36  E-value=3.3e-12  Score=109.95  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             EEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHHHhcC
Q 027577           41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM  118 (221)
Q Consensus        41 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~~~~m  118 (221)
                      |||+|.||.++|+.|...|++|.+||+++...+.+.+.|+....++.++++++|+|++|+|.....+.++.  ......+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987656666667777777899999999999999997666666652  4566788


Q ss_pred             CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +++.++||++...+-....+.+.+++..+.  ++|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999988877778888888877776  677

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=99.32  E-value=7.9e-12  Score=126.47  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=100.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc--hHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD  113 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i--~~~  113 (221)
                      .++|||||+|.||..+|++|...|++|.+||+++...+.+...|.....++.+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            478999999999999999999999999999998755555566677667789999999999999999888888776  345


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHh--CCceEEEeeC
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDV  154 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~--g~i~~a~lDV  154 (221)
                      .+..+++|.++||+|...+-....+.+.+.+  ..+.  ++|.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            7788999999999999999999999999988  5555  6663

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.32  E-value=9e-12  Score=113.87  Aligned_cols=119  Identities=10%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CCCCEEEEeCCCChhhhhc
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell---~~aDvVv~~~p~~~~t~~~  109 (221)
                      .|||||+|.||.++|++|...|++|.+|||++...+.+.+.     ++....++++++   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999987555544433     244556777766   4699999999987777777


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      + .+.+..+++|.+|||++....-+...+.+.+.+..+.....=|...
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence            7 4577889999999999999999999999999988887333334443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.29  E-value=1.7e-11  Score=106.11  Aligned_cols=94  Identities=26%  Similarity=0.323  Sum_probs=79.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      ..+.|++++|||+|.+|+.+++.|+.+|++|.++|+++...+.+...|+...  .++.+.++++|+|+.++|     ..+
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~  222 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALV  222 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhh
Confidence            4678999999999999999999999999999999998655555556676543  366788899999999998     246


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ++++.++.|++++++||++..
T Consensus       223 i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        223 LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             hhHHHHHcCCCCcEEEEEccC
Confidence            788899999999999999853

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.28  E-value=9.5e-12  Score=97.49  Aligned_cols=91  Identities=22%  Similarity=0.344  Sum_probs=68.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      |++|+|+|||+|+.|++.|..|+..|++|++-.+... +.+.+++.|++.. +.+|+++++|+|++.+| ++....++.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P-D~~q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP-DEVQPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC-hHHHHHHHHH
Confidence            5799999999999999999999999999998887654 5567778888765 89999999999999999 3333455667


Q ss_pred             HHHhcCCCCCEEEE
Q 027577          113 DRIAKMKKGVLIVN  126 (221)
Q Consensus       113 ~~~~~mk~ga~lIn  126 (221)
                      +....|++|+.++=
T Consensus        80 ~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   80 EIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHS-TT-EEEE
T ss_pred             HHHhhCCCCCEEEe
Confidence            88889999997764

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.28  E-value=5.5e-11  Score=103.24  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=91.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ..++|+|||+|.||..+|+.++..|.  +|++||+++...+.+.+.|+  ....++++.++++|+|++|+|.. ....+ 
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v-   82 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV-   82 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH-
Confidence            34789999999999999999998885  89999997655555555554  23457788899999999999942 22222 


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC---CC---CCCCCCCCCCCCCeEECCCCCc
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN---PQ---PAPKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~---~e---p~~~~~~l~~~~n~~~tPH~a~  180 (221)
                      .++....+++++++++++....-..+++.+.+.. .+.  ++....   .|   |.....+|+.-..+++||+-++
T Consensus        83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~  155 (307)
T PRK07502         83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT  155 (307)
T ss_pred             HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence            3445567899999999876542222233333322 222  333221   11   1112234555567889997664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.24  E-value=1.3e-11  Score=88.84  Aligned_cols=90  Identities=21%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             EEEEEccCHHHHHHHHHHccCC---CeEEEE-cCCCCChh-HHHhcCceecC-CHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFN---CNLLYH-DRVKMDPQ-LEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G---~~V~~~-d~~~~~~~-~~~~~g~~~~~-~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ||||||+|+||.++++.+...|   .+|.++ +|++.... ..++.++.... +..++++++|+|++|+|  |....-+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence            7999999999999999999999   888844 88764433 34556666555 78999999999999999  43333343


Q ss_pred             HHHHhcCCCCCEEEEcCCC
Q 027577          112 KDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg  130 (221)
                      .+. ....++.++|++..|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            444 667789999998765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.24  E-value=1.6e-11  Score=110.19  Aligned_cols=102  Identities=23%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             CCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC------CCChhHHHhcCceecCCHHhhcCCCC
Q 027577           21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD   94 (221)
Q Consensus        21 ~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~ell~~aD   94 (221)
                      -|.+.+++.....|+||||+|||+|++|++.|..|+..|++|.+--|.      ..+.+.+.+.|+.. .++++++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence            487766544456799999999999999999999999999998843332      23444444567754 58999999999


Q ss_pred             EEEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                      +|++.+|++ . .+.+.++.+..||+|+.|.
T Consensus       100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence            999999987 3 6667799999999998875

>PLN02712 arogenate dehydrogenase

Probab=99.24  E-value=1.7e-10  Score=109.66  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=81.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      -+.++|||||+|.||+.+|+.|+.+|++|.+||++. ..+.+.+.|+....++++++ +++|+|++|+|. ..+..++..
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            345799999999999999999999999999999864 33456667877777888866 569999999994 456666655


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      -.+..++++++|+|++.-+..-.+++.+.+..
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            43466899999999975543222344444433

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.24  E-value=4.8e-11  Score=103.99  Aligned_cols=97  Identities=21%  Similarity=0.318  Sum_probs=74.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC-CCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++. ....+.+.+.|+... +..+++++||+|++++|... ....+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~-~~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEV-QHEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHh-HHHHHHH
Confidence            57999999999999999999999999998776543 333344446677654 68889999999999999432 3344556


Q ss_pred             HHHhcCCCCCEEEEcCCCCcc
Q 027577          113 DRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~v  133 (221)
                      +....++++. +|.++.|--+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6777788885 8888888543

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.23  E-value=2.1e-10  Score=104.35  Aligned_cols=134  Identities=19%  Similarity=0.291  Sum_probs=96.2

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|+||| +|.||+++|+.|+..|++|.++++++... +.+.+.|+....+.++.++++|+|++|+|. ..+..++ .+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            5899997 89999999999999999999999875432 445556776666888899999999999994 3344444 455


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCCCCeEECCCC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV  178 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~-~~~~l~~~~n~~~tPH~  178 (221)
                      ...+++++++++++.......+++.+.+..+ ..  .+..   -|.. +..+++.-..+++||+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence            6778999999999986655556666555432 22  2332   2321 12356666778999975

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.23  E-value=1.6e-10  Score=99.05  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ++|+|||+|.||.++|+.|+..|++|.+||+++...+.+...|.. ...+..+.++++|+|++|+|... ...+ -++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~-~~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPP-SEQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHH-HHHHH
Confidence            479999999999999999999999999999876544555555532 22223356789999999999332 2233 34566


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee-CCCCCCCC---CCCCCCCCCCeEECCCCCc
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP---KDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD-V~~~ep~~---~~~~l~~~~n~~~tPH~a~  180 (221)
                      ..+++++++++++.-..    ...+++..........- ++..|...   ...-|+.-..+++||+-.+
T Consensus        79 ~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~  143 (279)
T PRK07417         79 PALPPEAIVTDVGSVKA----PIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT  143 (279)
T ss_pred             HhCCCCcEEEeCcchHH----HHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence            77889999999887542    22333332211211111 11111100   1112555677889997764

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.20  E-value=1.4e-10  Score=98.41  Aligned_cols=103  Identities=14%  Similarity=0.244  Sum_probs=80.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC----eEEEE-cCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +||||||+|+||.++++.|...|+    +|++| ++++...+.+.+.|+....+..++++++|+|++|+| ......++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            589999999999999999998887    88898 887655555566788777788899999999999997 444555553


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                       +....++++.++|++..|  +..+.+.+.+.
T Consensus        80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             -HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence             455667889999988766  46666665554

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.19  E-value=1.2e-10  Score=99.74  Aligned_cols=104  Identities=15%  Similarity=0.308  Sum_probs=80.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      .++|||||+|+||.++++.|...|+    +|+++||+....+.+. +.|+....+..+++++||+|++|+|. .....++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence            3589999999999999999987774    6999998765444443 36777667888899999999999993 4444444


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                       ++....+++++++|++.-|  ++.+.|.+.+.
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence             4455557888999999988  56677777664

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.17  E-value=5.1e-10  Score=95.75  Aligned_cols=100  Identities=16%  Similarity=0.289  Sum_probs=71.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCce-ecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++|+|||+|.||.++|+.|+..|+  +|++||+++...+.+.+.|+. ...+.+++. ++|+|++|+|.. ....++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence            479999999999999999988885  799999876544555556653 344677765 499999999943 333333 34


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ... ++++++|++++.-    ...+.+.+..
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            555 8899999997552    3445555543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=2.4e-10  Score=94.42  Aligned_cols=118  Identities=21%  Similarity=0.260  Sum_probs=102.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc---CCCCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++||.||+|+||..+.+++...|++|++||+++...+.+...++...+++++++   ....+|.+++|....|..+++ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            579999999999999999999999999999998777777788887777888765   457899999998766766664 5


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      +-..|.+|-++|+-+...--|.....+.|++..|.  .+||=..
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS  121 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS  121 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence            66788999999999999999999999999999998  8998554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.14  E-value=1.5e-09  Score=93.48  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~   92 (221)
                      ++|+|||+|.||..+|..+...|++|++||+++...+.+.+       .                 ++....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            58999999999999999999999999999997643332210       0                 13345678889999


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...   ...+.+.++. .-+..++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence            99999999977666655555566778999877 7887744   4556665543 2233466655

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.14  E-value=6.1e-10  Score=98.86  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--Cce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|||+|.||.++|+.|+..|++|.+|++++.........  ++.  ...++++++++||+|++|+|. ..+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence            479999999999999999999999988888766444333332  221  234678889999999999994 34444443 


Q ss_pred             HHHh-cCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCC---------CCCCCCCCCeEECCCCCc
Q 027577          113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK---------DHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       113 ~~~~-~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~---------~~~l~~~~n~~~tPH~a~  180 (221)
                      +... .++++++|++++.-+.-..+++.+.+. ....  ++...   |.+.         ...|+.-...++||+-..
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence            3333 478999999998766433333433322 2222  34432   3221         223556566889997654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.12  E-value=2.7e-09  Score=91.81  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP   91 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~ell~   91 (221)
                      ++|+|||.|.||..+|..+...|++|.+||+++...+...+                         .++....+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999999999999987543221110                         12334578888999


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n  171 (221)
                      .||+|+.++|...+.+..+-++....++++++|++.+..  +....+.+.+.... +..++-.        .+|.+..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf--------~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF--------ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC--------CCCCCcCCe
Confidence            999999999966555555555666778889988544333  34456666654322 3344432        223445577


Q ss_pred             eEECCCCCc
Q 027577          172 QAMTPHVSG  180 (221)
Q Consensus       172 ~~~tPH~a~  180 (221)
                      +.+.|+-..
T Consensus       153 vevv~~~~t  161 (287)
T PRK08293        153 AEIMGHPGT  161 (287)
T ss_pred             EEEeCCCCC
Confidence            888887664

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.11  E-value=3.9e-10  Score=98.00  Aligned_cols=82  Identities=20%  Similarity=0.290  Sum_probs=67.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      .+++|+|||+|.||+++|+.|...|++|.+|+|+..             .+++++++++|+|++++|. +....++.. .
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l   67 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V   67 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence            468999999999999999999999999999998642             3678888999999999995 466666533 3


Q ss_pred             Hh-cCCCCCEEEEcCCCC
Q 027577          115 IA-KMKKGVLIVNNARGA  131 (221)
Q Consensus       115 ~~-~mk~ga~lIn~srg~  131 (221)
                      .. .+++++++|++++|-
T Consensus        68 ~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         68 QALNLPPETIIVTATKGL   85 (308)
T ss_pred             HHhcCCCCcEEEEeCCcc
Confidence            23 478899999998853

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.11  E-value=1.3e-09  Score=94.07  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~   92 (221)
                      ++|+|||+|.||..+|+.+...|++|++||+++...+.           +.+.            + ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            68999999999999999999999999999987643221           1111            1 2233344 56899


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHh
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~  144 (221)
                      ||+|+.|+|..++.+..+..+....++++++|+ |+|.-   ....+.+.+..
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            999999999888888877777777889999887 66554   45556666543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.10  E-value=1.1e-09  Score=93.80  Aligned_cols=138  Identities=20%  Similarity=0.173  Sum_probs=91.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcC--CCCChhHHHhcCcee--cCCH-HhhcCCCCEEEEeCCCChhhhhcc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGAKF--EEDL-DTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~g~~~--~~~l-~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      -++|+|+|+|.||+++|+.++..|+.+.++++  +....+.+.+.|+..  ..+. .+.+..+|+|++++|- ..+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence            47899999999999999999999998755554  333334444456532  1232 6777889999999993 3344444


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC---CCCCCCCCCCeEECCCCCcC
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVSGT  181 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~---~~~~l~~~~n~~~tPH~a~~  181 (221)
                       ++....+++|++|++++.-.---.+++.+.+.+.. ...+     .-|..   ...+++....+++||.-...
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg-----~HPM~G~~~~~~lf~~~~~vltp~~~~~  148 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVG-----GHPMFGPEADAGLFENAVVVLTPSEGTE  148 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEe-----cCCCCCCcccccccCCCEEEEcCCCCCC
Confidence             34455799999999998866555555555554332 2222     22332   24467776779999976543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.09  E-value=1.9e-09  Score=97.74  Aligned_cols=137  Identities=10%  Similarity=0.073  Sum_probs=92.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCCCCEEEEe
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~ell~~aDvVv~~   99 (221)
                      .++|||||+|.||..+|..+.. |++|++||+++...+.+. .|..                ..++..+.+++||++++|
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            4799999999999999999877 699999999875554443 2221                222334568999999999


Q ss_pred             CCCC------hhhhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC--Cce-E-EEeeCCCCCCCCCCC---
Q 027577          100 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIA-G-YSGDVWNPQPAPKDH---  164 (221)
Q Consensus       100 ~p~~------~~t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g--~i~-~-a~lDV~~~ep~~~~~---  164 (221)
                      +|..      ++...+.  .....+.+++|.++|+.|.-.+-..+.+.+.+...  ++. + ...=+|.+||.....   
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence            9944      2334444  34567789999999999999998888765544332  222 0 111246678776543   


Q ss_pred             CCCCCCCeEE
Q 027577          165 PWRYMPNQAM  174 (221)
Q Consensus       165 ~l~~~~n~~~  174 (221)
                      .+.+.|.++.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            3455555543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.07  E-value=8.4e-10  Score=94.63  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=77.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~-~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++++|+|||+|+||.++++.|...|    .+|++++|+.. ..+. ....|+....+..+++++||+|++++|. .....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence            4679999999999999999998877    67999998642 2222 2345777667888899999999999993 33333


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      ++ .+....++++.+||++..|-  ..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            33 34555678899999987663  5566666554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.07  E-value=2.1e-09  Score=88.03  Aligned_cols=109  Identities=22%  Similarity=0.264  Sum_probs=84.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhc
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~  109 (221)
                      .+++||+++|+|+|+||+.+|+.|..+|++|+++|+++...+.. ...+...+ +.++++. +||+++.|..     .++
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~   97 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV   97 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence            46899999999999999999999999999999999875433332 23366655 4456664 7999997765     457


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ++.+.++.|+ ..+|+..+-+.+.| ..-.+.|++..+.
T Consensus        98 I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          98 INDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             cCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            8888888887 46888888887766 5667778888777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=99.07  E-value=6.4e-10  Score=96.63  Aligned_cols=111  Identities=19%  Similarity=0.325  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      -+.||++.|.|+|..|+.+|.+++..|++|++....+...-.+...|++.. ..+++.+.+|+++.++-    +++++..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence            478999999999999999999999999999999877655445555677765 79999999999999886    6788999


Q ss_pred             HHHhcCCCCCEEEEcCCCCc-cCHHHHHHH-HHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDA-CSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~-vd~~al~~a-l~~g~i~  148 (221)
                      +.+..||+|+++-|++.-.+ +|.+.|.+. ++...++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999997666 666666543 3334444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.06  E-value=2.2e-09  Score=93.85  Aligned_cols=116  Identities=13%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hc---------CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET---------GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~---------g~~~~~~l~ell~~aDvV   96 (221)
                      ++|||||.|.||..+|..+...|++|.+||+++...+...           +.         .+....++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999999999999754322111           01         124557889999999999


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +-++|.+.+.+..+-++.-+.++++++|-..+.  -+...++.+.++. .=+..++-.|
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS--~l~~s~la~~~~~-p~R~~g~Hff  143 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAIIASSTS--GLLPTDFYARATH-PERCVVGHPF  143 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC--ccCHHHHHHhcCC-cccEEEEecC
Confidence            999998888888888888888999985544333  3467777777753 2233455433

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.06  E-value=1.5e-09  Score=95.14  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=77.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .++|+|||+|.||..+|..|...|++|.+|+|++...+.....        +      +...++++++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999975433333322        2      3345688888899999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCC-CccC--HHHHHHHHHh
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS  144 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg-~~vd--~~al~~al~~  144 (221)
                      .. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            44 22     4566778999999999997 4332  4456666654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.03  E-value=2.4e-09  Score=96.84  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhh---------------cCCCCEEEEeC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTM---------------LPKCDIVVVNT  100 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~el---------------l~~aDvVv~~~  100 (221)
                      ++|+|||+|.||..+|..|...|++|++||+++...+....-.... ...++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999999765444322111110 1122222               34799999999


Q ss_pred             CCC------hhhhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          101 PLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       101 p~~------~~t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      |..      ++...+.  .......+++|+++|+.|.-.+-..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            943      1222222  34567778999999999998888888888777654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.03  E-value=8.9e-09  Score=89.52  Aligned_cols=134  Identities=11%  Similarity=0.083  Sum_probs=86.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||.++|..+...|++|.+||+++...+.           ..+.|             +....++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            47999999999999999999999999999997533222           11223             2455788889999


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCe
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~  172 (221)
                      ||+|+.++|...+....+-.+.-...++..++...+.  ......+.+.+.....  ...|-+-+ |.      .-.+=+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~-p~------~~~~lv  151 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPIN-PP------YLIPVV  151 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCC-Cc------ccCceE
Confidence            9999999996654444443333333455555543333  3456677777754332  34443332 21      111236


Q ss_pred             EECCCCCcC
Q 027577          173 AMTPHVSGT  181 (221)
Q Consensus       173 ~~tPH~a~~  181 (221)
                      .++|+-++.
T Consensus       152 eiv~~~~t~  160 (308)
T PRK06129        152 EVVPAPWTA  160 (308)
T ss_pred             EEeCCCCCC
Confidence            688887654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.02  E-value=6.7e-09  Score=89.54  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..+...|++|.+||+++...+...+           .+             +....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999987543322110           12             23445665 4789


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ||+|+.|+|..++.+..+-.+....++++++|+ |+|.-.   ...+.+.+... -+..++..+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence            999999999776665555556777889999998 554433   34677766432 2223555444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.02  E-value=7.8e-09  Score=91.91  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ...||+|||+ |.||+++|+.|+. +|.+|+++|+...           ...++++.+++||+|++|+|. ..+..++. 
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~-   69 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIE-   69 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence            4679999999 9999999999985 5899999998411           124678889999999999993 23333332 


Q ss_pred             HHH---hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC--CCCCCCCCCCeEECCC
Q 027577          113 DRI---AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH  177 (221)
Q Consensus       113 ~~~---~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~--~~~~l~~~~n~~~tPH  177 (221)
                      +..   ..++++++|+|++.-+.    .+.+++........     ..-|..  ..+.+++-.++++||.
T Consensus        70 ~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~fV-----G~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         70 EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAEVV-----GLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCCEE-----eeCCCCCCCCCcccCCCeEEEeCC
Confidence            222   24799999999987552    22222222222212     222432  1235666667889986

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.02  E-value=3.3e-09  Score=102.24  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|||+|.||.++++.++..|  .+|++||+++...+.+.+.|+.  ...+++++++++|+|++|+|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4799999987655555566653  3456788899999999999942 333333 3


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC---------CCCCCCCCCCCeEECCCCCc
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA---------PKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~---------~~~~~l~~~~n~~~tPH~a~  180 (221)
                      +....++++++|++++.......+.+.+.+....++     +..+-|.         ..+..|+.-.+++++|+-..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            444567889999999875543345555555432222     2223332         12335667778899997654

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.02  E-value=3.2e-09  Score=91.74  Aligned_cols=93  Identities=13%  Similarity=0.131  Sum_probs=75.9

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577           48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (221)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (221)
                      |+.+|++|...|++|++||++....     +.+.+.|+...++..++++++|+|++|+|..+.+..++ ...+..+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8899999999999999999865322     34566788888889999999999999999887787776 45888899999


Q ss_pred             EEEEcCCCCccCHHHHHHHHHh
Q 027577          123 LIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       123 ~lIn~srg~~vd~~al~~al~~  144 (221)
                      ++||++..   +.+.+++.|+.
T Consensus       111 IVID~STI---sP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCTV---SPVVLYYSLEK  129 (341)
T ss_pred             EEEECCCC---CHHHHHHHHHH
Confidence            99999775   55566655554

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.01  E-value=4.1e-09  Score=82.03  Aligned_cols=111  Identities=16%  Similarity=0.269  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCCCCEEEEeCCCChh-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK-  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~-~~~~g~----~~~~~l~ell~~aDvVv~~~p~~~~-  105 (221)
                      .+.+++++|+|+|.||+.+++.+...| .+|.++|++....+. .+..+.    ....+.+++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            366899999999999999999998886 789999987543332 333332    1345777888999999999996543 


Q ss_pred             hhh-cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~-~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ... .+..   ..++++.+++|++..+...  .+.+.+++.++.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            112 2322   2368999999998765443  787877776554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.00  E-value=2.5e-09  Score=96.51  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV   96 (221)
                      ++|+|||+|.||..+|..|...|++|++||+++...+....                   .| +....+++++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            47999999999999999999999999999987543322221                   23 44556788889999999


Q ss_pred             EEeCCCChh------hhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577           97 VVNTPLTEK------TRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (221)
Q Consensus        97 v~~~p~~~~------t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al  142 (221)
                      ++|+|....      ...+.  .......+++++++|+.|.-.+-..+.+.+.+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            999994322      11122  23456678999999999876666666776444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.98  E-value=2.5e-09  Score=91.49  Aligned_cols=109  Identities=19%  Similarity=0.155  Sum_probs=80.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc--CCCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      ..++|||||+|.||+.+++.+..  .++++. ++|+++...+ .+...+. ..+.+++++++++|+|++|+|..  +..-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRA   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHH
Confidence            35799999999999999999975  478865 6787653322 3334453 45678999999999999999943  2222


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +   ....++.|..++..+.+.+.+.++|.++.++++..
T Consensus        83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            2   23445678888888899888889999988886655

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.98  E-value=2.1e-09  Score=93.49  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||+|.||..+|..|...|++|.+|++++...+.....              ++....++++.++++|+|++|+|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999975443333332              344456788888999999999994


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                       ..+..++ .+....+++++++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4444444 3455667889999999866433

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.98  E-value=4.6e-09  Score=97.03  Aligned_cols=116  Identities=13%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-------------------hcC-ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~ell~~aDvV   96 (221)
                      ++|||||+|.||.++|..+...|++|.+||+++...+...                   ..+ +...+++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999764332211                   112 45667898999999999


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      +.++|...+.+..+-.+.-+.++++++|...+.| + ....+.+.+.....  ..++-+.
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~r--~~~~hP~  140 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPER--LFVAHPY  140 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcce--EEEEecC
Confidence            9999977666665544555567777765544444 3 35577777654332  3455433

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.98  E-value=7.2e-09  Score=92.53  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ..++|+||| +|.||+++|+.|+..|+.|.+||++..             .+.++++++||+|++|+|... +..++ .+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~  161 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI-AR  161 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH
Confidence            458999999 999999999999999999999998421             256778899999999999543 34444 33


Q ss_pred             HHhcCCCCCEEEEcCCCCccCHHHHHHH
Q 027577          114 RIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd~~al~~a  141 (221)
                      ... +++|++|++++.-+..-..++.+.
T Consensus       162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        162 LPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence            444 899999999977554333444443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.97  E-value=1.7e-09  Score=85.16  Aligned_cols=92  Identities=23%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCCCCEEEEeCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ||+|+|.|++|.++|..|...|.+|..|.+++...+.....              .+...++++++++++|+|++++|. 
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence            69999999999999999999999999999975322222211              133457899999999999999992 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ...+ -+-++....++++..+|+++.|=
T Consensus        80 ~~~~-~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   80 QAHR-EVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             GGHH-HHHHHHTTTSHTT-EEEETS-SE
T ss_pred             HHHH-HHHHHHhhccCCCCEEEEecCCc
Confidence            2223 24455667788999999998773

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07680 late competence protein ComER; Validated

Probab=98.97  E-value=3.6e-09  Score=90.38  Aligned_cols=103  Identities=12%  Similarity=0.269  Sum_probs=76.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhHHHh-c-CceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ++|+|||+|+||+.+++.|...|.    +|.+++|++...+.+.. . ++....+..+++.++|+|++++| ......++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            479999999999999999988873    79999997644333322 2 56666788888999999999998 22333433


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                       ++....++++.+||+++.|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             3455567888999999865  36777776654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=2.5e-08  Score=86.64  Aligned_cols=106  Identities=13%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCCCCEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDvVv   97 (221)
                      ++|+|||+|.||..+|..+...|++|++||++....+...+     .+              +....++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            58999999999999999999999999999987543332221     11              234457888899999999


Q ss_pred             EeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      +|+|...+....+-.+.-..++++++|+..+.|  +....+.+.+..
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999965443333333343456777777655444  345677777643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.93  E-value=3.3e-08  Score=84.80  Aligned_cols=105  Identities=15%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-----------HHHhcC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----------LEKETG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..+...|++|+++|+++...+           ...+.|             +...++++ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998764332           111222             23345555 4789


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ||+|+.|+|.+.+.+.-+-.+..+.++++++|+..+.|  +....+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999966666655555666778999988655555  566688887753

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.93  E-value=1.3e-08  Score=87.80  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~   92 (221)
                      ++|||||.|.||..+|..+...|++|.+||+++...+.           +.+.|             +....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999997654332           11112             2245677 45799


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+  .++..++... =+..++..|.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~-~r~~g~hf~~  146 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRP-GRVLGLHFFN  146 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCC-ccEEEEecCC
Confidence            99999999988888877765555555 889999888776544  4444444322 1234566554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.92  E-value=1.5e-08  Score=87.43  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM   89 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~el   89 (221)
                      ++|+|||+|.||..+|..+...|++|++||+++...+...+              .+             +....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999987643321100              01             1233445 56


Q ss_pred             cCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +++||+|+.++|...+.+..+-++.-..++++++|++.+.|  +....+.+.+... -+..++..|
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~  145 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWF  145 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecC
Confidence            78999999999966554454545555667889999888777  4566777776532 233455533

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.92  E-value=3.4e-09  Score=94.51  Aligned_cols=96  Identities=18%  Similarity=0.271  Sum_probs=74.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCcee------cCCHHhhcCCCCEEEEeCCCC-h
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKF------EEDLDTMLPKCDIVVVNTPLT-E  104 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~------~~~l~ell~~aDvVv~~~p~~-~  104 (221)
                      .+.+++|.|+|.|.+|+..++.++.+|++|.++|+++...+.+. ..+...      ..++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36788999999999999999999999999999998754333322 223211      134677889999999998542 2


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+..+++++.++.|+++++|||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            244578899999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.92  E-value=4.7e-09  Score=90.53  Aligned_cols=80  Identities=23%  Similarity=0.343  Sum_probs=67.1

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||+|+|||.| .||+.+|..|...|+.|.+|++..              .++.+++++||+|+++++..    +.
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~  215 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RL  215 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hc
Confidence            458999999999996 999999999999999999998743              16888999999999999843    34


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +....   +++|+++||+|-..
T Consensus       216 v~~~~---ik~GaiVIDvgin~  234 (301)
T PRK14194        216 IDADW---LKPGAVVIDVGINR  234 (301)
T ss_pred             ccHhh---ccCCcEEEEecccc
Confidence            54443   79999999998644

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.92  E-value=6.2e-09  Score=88.18  Aligned_cols=103  Identities=13%  Similarity=0.251  Sum_probs=74.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ++|||||+|+||+++++.|...|..   +.+++|+....+.+.. . ++....+.+++++++|+|++++| ......++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            4799999999999999999877753   5788886543333333 3 46666788889999999999999 333444443


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      .  + .++++.++|+++-  -+..+.|.+.+..+
T Consensus        80 ~--l-~~~~~~~vis~~a--g~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A--L-RFRPGQTVISVIA--ATDRAALLEWIGHD  108 (258)
T ss_pred             H--h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence            2  2 2578899999874  37778888877653

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.90  E-value=1.9e-08  Score=87.12  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=102.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcchHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      -.+|||||+|+||+-+|+.+...|+.|+.+||+. -.+.+...|...++.+.++++ +.|+|++|+. -..+..++..--
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatyp  129 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYP  129 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcC
Confidence            5689999999999999999999999999999976 556677788888888988885 6999999986 223333333333


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC-CCCCCCCCCCCCCCCeEECCCCC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN-PQPAPKDHPWRYMPNQAMTPHVS  179 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~-~ep~~~~~~l~~~~n~~~tPH~a  179 (221)
                      +.++|.|++++++..-.....+++.+.|-+.--.   +-+.. ..|...+|.+..+|=|+.--.++
T Consensus       130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDI---lctHpmfGPksvnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDI---LCTHPMFGPKSVNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             chhhccceeEeeeeecchhHHHHHHHhCccccce---EeecCCcCCCcCCCccccCceEEEEeecc
Confidence            5668999999999988888888888887654222   11211 13445677788888666554444

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.90  E-value=1.6e-09  Score=82.34  Aligned_cols=93  Identities=19%  Similarity=0.310  Sum_probs=56.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -...+|+|||.|++|..+++.|...|+.|..+ +|+..+.+.+.. .+...+.+++++++++|++++++|++. .. -+.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~-~va   85 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IA-EVA   85 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HH-HHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HH-HHH
Confidence            34679999999999999999999999998765 565433333322 333345578899999999999999543 22 233


Q ss_pred             HHHHhc--CCCCCEEEEcC
Q 027577          112 KDRIAK--MKKGVLIVNNA  128 (221)
Q Consensus       112 ~~~~~~--mk~ga~lIn~s  128 (221)
                      +++-..  .++|.+|+.+|
T Consensus        86 ~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   86 EQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHHCC--S-TT-EEEES-
T ss_pred             HHHHHhccCCCCcEEEECC
Confidence            444444  68999999985

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.89  E-value=6.8e-09  Score=94.80  Aligned_cols=111  Identities=11%  Similarity=0.072  Sum_probs=92.8

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCC---CCEEEEeCCCChhhhhcchHHHHhcC
Q 027577           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM  118 (221)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (221)
                      ||+.+|++|...|++|.+|||++...+.+.+.     ++....+++++++.   +|+|++++|..+.+..++ ...+..|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            79999999999999999999987655555442     47777899998874   899999999988888888 4688889


Q ss_pred             CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus       119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      .+|.++||++....-+...+.+.+++..+.....=|...+
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~  119 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE  119 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence            9999999999999999999999999998884444455543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.88  E-value=1.2e-08  Score=94.34  Aligned_cols=116  Identities=21%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~   92 (221)
                      ++|||||+|.||..||..+...|++|.+||+++...+.           ..+.|             +....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            68999999999999999999999999999997654332           12223             355567766 569


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEE-EEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~l-In~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      ||+|+-++|.+.+.+..+-.+.-..+++++++ .|+|.-.+   ..+..++..- =+..++..|.+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~P  148 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNP  148 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCC
Confidence            99999999988888877766655667899999 58877655   4666666532 12246665553

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.88  E-value=1.3e-08  Score=86.37  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=78.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ++|||||+|+||++++..+...|    .+|++.+|+..... ....+|+....+.+++..++|+|++++.  |..    -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence            58999999999999999999888    57999999875553 5667777656677899999999999997  432    2


Q ss_pred             HHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHH
Q 027577          112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       112 ~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      .+.+..++   ++.+||+++.|  +..+.|.+.+.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            33444454   79999999988  56777877775

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.87  E-value=8.7e-09  Score=87.94  Aligned_cols=90  Identities=23%  Similarity=0.362  Sum_probs=73.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -|.||||+|||+|+-|++-|..|+..|.+|++--|.. .+.+.+.+.|+... +.+|+++++|+|.+.+|+ +....++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHHH
Confidence            4899999999999999999999999999987665544 33567777888865 899999999999999994 33445566


Q ss_pred             HHHHhcCCCCCEE
Q 027577          112 KDRIAKMKKGVLI  124 (221)
Q Consensus       112 ~~~~~~mk~ga~l  124 (221)
                      ++.-..|++|+.+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            6777888888754

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.86  E-value=2.6e-08  Score=85.43  Aligned_cols=103  Identities=14%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~-~~~~-~~~-g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      ++|+|||+|+||.++++.+...|    .+|.+|+++... .+.. ... ++....+.+++++++|+|++|+| ......+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence            47999999999999999998877    679999885421 1111 222 23444678888999999999999 2223333


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      + .+....++++.+||++..|  +..+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            3 3344556788899999888  66777877664

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.85  E-value=1.1e-08  Score=86.86  Aligned_cols=101  Identities=16%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC---CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|||+|.||..+++.+...|   .+|.+++|++...+.+.+ .++....+.+++++++|+|++|+|. .....++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-H
Confidence            58999999999999999998888   689999997644443433 4666667888889999999999982 2233333 2


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      +....+  +.+||++.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            233333  46888887764  5666666654

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.84  E-value=9.8e-09  Score=87.67  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=80.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      +.||.+.|.|+|.+|+..|+.|+.||.+|++....+-..-.+...|.+.. +++|++++.|+++.++.    .+.+|..+
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~~  286 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITGE  286 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhHH
Confidence            57999999999999999999999999999998876654444555677754 89999999999998775    56789999


Q ss_pred             HHhcCCCCCEEEEcCCCCc
Q 027577          114 RIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~  132 (221)
                      .|..||+++++.|++.-..
T Consensus       287 H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHhCcCCcEEeccccccc
Confidence            9999999999999987544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.84  E-value=3.6e-09  Score=81.27  Aligned_cols=95  Identities=25%  Similarity=0.355  Sum_probs=68.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChh-HHHhc---Cc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQ-LEKET---GA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~-~~~~~---g~--~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +++++++.|||.|.+|+.++..|...|++ |++++|+..+.+ .+...   .+  ...+++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999997 999999754332 23333   22  2345677778999999999984432


Q ss_pred             hhhcchHHHHhcCCCC-CEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKG-VLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~g-a~lIn~srg  130 (221)
                         .+.++.++...+. .+++|++.-
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~P  111 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVP  111 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS
T ss_pred             ---ccCHHHHHHHHhhhhceeccccC
Confidence               6777777655443 377777643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.83  E-value=3.2e-08  Score=88.73  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----------------cCce--ecCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~ell~~aDvVv~   98 (221)
                      ++|+|||+|.||..+|..+. .|++|++||+++...+...+                .+..  ...+..+++++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997776 49999999997654333222                1222  22346777899999999


Q ss_pred             eCCCChhh-------hhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577           99 NTPLTEKT-------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus        99 ~~p~~~~t-------~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                      |+|...+-       ..+.  -+.... +++|.++|+.|.-.+=..+.+.+.+.+..+
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v  136 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI  136 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence            99944111       1111  123344 799999999999999888889888766433

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.82  E-value=3e-08  Score=83.02  Aligned_cols=106  Identities=14%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC---Ce-EEEEcCC-CCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G---~~-V~~~d~~-~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ..++|+|||+|+||+++++.+...|   .+ +++++++ +...+ .....++....+++++++++|+|++++|. .....
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence            3578999999999999999987665   33 7778764 22222 23345676667888999999999999993 22222


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ++ ++.-..++ +.+||+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            22 22322344 6799999877  4555676666543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.82  E-value=3.3e-08  Score=91.43  Aligned_cols=119  Identities=16%  Similarity=0.118  Sum_probs=84.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (221)
                      =++|||||.|.||+.||..+...|++|.+||+++...+..           .+.|             +....++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3579999999999999999999999999999976443211           1122             334567765 56


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +||+|+.++|.+.+.+..+-.+.-..++++++|. |+|.-.   ...+.+.+.. .-+..++..|.+-|
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCccc
Confidence            9999999999887877776666666678888776 665543   3566676653 33446777665433

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.77  E-value=3.9e-08  Score=78.34  Aligned_cols=82  Identities=28%  Similarity=0.380  Sum_probs=69.1

Q ss_pred             cCCCCCEEEEEccCHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      .+|.|++|.|||.|.| |..+|+.|...|.+|.+.+++.              .++.+.+.++|+||.+++..    +++
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii  101 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV  101 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence            3699999999999996 8889999999999999999852              36778899999999999832    267


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccC
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                      ..+.   ++++.++||++.-.-+|
T Consensus       102 ~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080         102 KGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             cHHH---ccCCeEEEEccCCCccc
Confidence            7765   57899999999888777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.76  E-value=3.9e-08  Score=84.84  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=65.3

Q ss_pred             ccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEc-CCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +.++.||+|+||| .|.||+.+|.+|...|+.|.+|+ ++.               ++++++++||+|+++++...    
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----  213 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----  213 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence            3479999999999 99999999999999999999996 432               46888999999999998433    


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      .+....   +++|+++||++--.
T Consensus       214 ~v~~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        214 MVKGDW---IKPGATVIDVGINR  233 (296)
T ss_pred             hcchhe---ecCCCEEEEcCCcc
Confidence            344333   89999999998644

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.74  E-value=5.6e-08  Score=82.87  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=74.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCe-EEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|||||+|.||+.+++.+...  +++ +.++|+++...+. .+..+...+.++++++.++|+|++|+|  +....   +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~--~~~~~---~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS--VNAVE---E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC--hHHHH---H
Confidence            4899999999999999998765  466 5568886533332 334466667789999999999999998  22221   2


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~  148 (221)
                      -....++.|..++..+-|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence            22334556777777888877763   4566766666544

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.72  E-value=8.2e-08  Score=84.70  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577           48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (221)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (221)
                      |..+|..|...|++|++||++..     ..+.+...|+....+..+++++||+|++++|....++.++ ......+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            88999999999999999998753     1223455677777788899999999999999554466666 36777889999


Q ss_pred             EEEEcCCCCccCH-HHHHHHHH
Q 027577          123 LIVNNARGAIMDT-QAVVDACS  143 (221)
Q Consensus       123 ~lIn~srg~~vd~-~al~~al~  143 (221)
                      +|||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999877655 55656664

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.67  E-value=1.3e-07  Score=78.25  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=64.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCCCCEEEEeCCCCh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ++|+||| .|+||+.+++.|...|.+|.++++++...+....        .++  . ...+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            5899997 8999999999999999999999987543322211        121  1 1235678889999999999932 


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                      ....++ ++....++ +.++|+++.|--.
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            233333 22223344 5899999877443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.67  E-value=8.9e-08  Score=82.10  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             ccCCCCCEEEEEccCHH-HHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||.|.+ |+.+|..|...|+.|+++...              ..++.+.+++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~  214 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV  214 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence            45799999999999988 999999999999999987642              2367889999999999998    3456


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      ++.   +.+|+|+++||++--..
T Consensus       215 i~~---~~ik~gavVIDVGin~~  234 (285)
T PRK14189        215 LTA---DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             cCH---HHcCCCCEEEEcccccc
Confidence            776   45799999999986543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.66  E-value=3.2e-07  Score=78.97  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++|+|||.|.||..+|..|...|++|.+++++....+...+.|..           ...+.+++ +.+|+|++++|. .+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence            479999999999999999999999999999865444433333431           13445555 889999999993 33


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +..++ +.....+.+++.||....| +-.++.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            43333 3344556778889888776 33456666666555544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.66  E-value=1.8e-07  Score=82.12  Aligned_cols=107  Identities=19%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCCCCEEEEe
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDvVv~~   99 (221)
                      ++|+|||.|.||..+|..|...|++|.++++++. .+...+.+..                 ...+. +.++.+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            5899999999999999999999999999998542 2333333322                 12334 567899999999


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +|. +....++ ++....++++++||.+..| +...+.+.+.+...++.
T Consensus        81 vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         81 VKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             ecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            984 3444443 4455667889999988654 44556677777654443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.2e-07  Score=81.22  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=65.7

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||+|+|||. |.||+.+|..|...|+.|.+|...              ..++++.+++||+|+.+++..    ++
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~~  214 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----HF  214 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----cc
Confidence            45799999999999 999999999999999999998431              126888999999999999833    34


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +....   +++|+++||+|--.
T Consensus       215 v~~~~---ik~GavVIDvgin~  233 (284)
T PRK14179        215 VTKEF---VKEGAVVIDVGMNR  233 (284)
T ss_pred             CCHHH---ccCCcEEEEeccee
Confidence            55443   79999999998544

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.63  E-value=1.2e-06  Score=73.11  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=101.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCe---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCCCCE
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI   95 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~---V~~~d~~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDv   95 (221)
                      ..+.++++.|+|.|.+|+.+|+.|...|++   |+++||+.    ...        +.++..+.... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            468899999999999999999999999984   99999973    221        12233221111 267788889999


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC-ceEEEeeCCCCCCCCCCCCCCCCCCeEE
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~-i~~a~lDV~~~ep~~~~~~l~~~~n~~~  174 (221)
                      |+.++|     .+++.++.++.|.++.++...+  .+..|.-+.++.+.|. +.   .|=  .+.     ...+..|+++
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~ls--nP~~e~~~~~A~~~ga~i~---a~G--~~~-----~~~Q~nn~~~  163 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALA--NPVPEIWPEEAKEAGADIV---ATG--RSD-----FPNQVNNVLG  163 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeC--CCCCcCCHHHHHHcCCcEE---EeC--CCC-----Cccccceeee
Confidence            999987     4678888899999999999888  4444544444444443 23   221  111     2346689999


Q ss_pred             CCCCCcCCHH-------HHHHHHHHHHHHHHHcC
Q 027577          175 TPHVSGTTID-------LRYAAGVKDMLDRYFKG  201 (221)
Q Consensus       175 tPH~a~~t~~-------~~~~~~~~~~~~~~~~g  201 (221)
                      -|=++-....       ..|.....+.+..+..-
T Consensus       164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~  197 (226)
T cd05311         164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAEE  197 (226)
T ss_pred             cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCc
Confidence            9988543222       44444455556555543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.61  E-value=4.2e-07  Score=78.41  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=75.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ++|+|||.|.||..+|..|...|++|.++++ ....+...+.|..             ...+.++..+.+|+|++++|. 
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence            5799999999999999999999999999998 4333333333321             123556666889999999993 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ..+..++ ++....++++++||.+.-| +-..+.+.+.+.+.++.
T Consensus        79 ~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         79 YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            3333333 3344556778888887665 44466777777655544

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.59  E-value=2.7e-07  Score=78.43  Aligned_cols=98  Identities=19%  Similarity=0.361  Sum_probs=66.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ..+||+|||+|+||.++++.+...+    .++++++++...      .++....+..++++++|+|++|+| ...+..++
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl   74 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL   74 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence            3578999999999999999998765    248889886432      233445577788889999999998 23334333


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      . +....+++ ..+|++..|  +..+.+.+.+.
T Consensus        75 ~-~i~~~l~~-~~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         75 L-EIKPYLGS-KLLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             H-HHHhhccC-CEEEEEeCC--ccHHHHHHHcC
Confidence            3 34344554 466776666  34555555553

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.58  E-value=1.8e-07  Score=75.35  Aligned_cols=114  Identities=13%  Similarity=0.177  Sum_probs=76.9

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH----H-------h-------------cCceecCCHHhhcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----K-------E-------------TGAKFEEDLDTMLPKC   93 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~----~-------~-------------~g~~~~~~l~ell~~a   93 (221)
                      +|+|||.|.||+.+|..+...|++|.+||+++...+..    +       +             ..+....+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            69999999999999999999999999999976432110    0       0             1234567899888 99


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      |+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|...+.. .-+..++-.|
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~  138 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF  138 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence            9999999977777776777777788899998776544  556667666642 3334566655

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.57  E-value=2.2e-07  Score=80.79  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=71.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|++|+++|+.|...|++|..|.+++...+....              .++....+++++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            68999999999999999999999999999986422211111              123445789999999999999999 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCCccC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                      +...+.++. +.-..+++++.+|+++.|=-.+
T Consensus        81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             hHHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence            333333332 3335678999999999985444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.57  E-value=3.3e-07  Score=74.86  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHH-HhcC--ceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++++|+|.|+||..+|+++...|++|++-+++... .+.+ +..+  +.. .+.++..+.+|+|++++|... ... +.+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~-~~~~dA~~~aDVVvLAVP~~a-~~~-v~~   78 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG-GSNEDAAALADVVVLAVPFEA-IPD-VLA   78 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccccc-CChHHHHhcCCEEEEeccHHH-HHh-HHH
Confidence            68999999999999999999999999888665422 2222 2222  233 477899999999999999432 222 234


Q ss_pred             HHHhcCCCCCEEEEcCCC
Q 027577          113 DRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg  130 (221)
                      +....+. |.++|+++-.
T Consensus        79 ~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          79 ELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHHhC-CeEEEecCCC
Confidence            4555555 8999998753

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.57  E-value=8.9e-08  Score=77.46  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDvV   96 (221)
                      |+|+|||+|.+|..+|..+...|++|+++|.++...+...                    ........+.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            6899999999999999999999999999998753221111                    11234556788889999999


Q ss_pred             EEeCCCChhh-h------hcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHH-HHHHh
Q 027577           97 VVNTPLTEKT-R------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSS  144 (221)
Q Consensus        97 v~~~p~~~~t-~------~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~-~al~~  144 (221)
                      ++|+| ||.. .      .+.  -+.....++++.++|.-|.-.+=..+.+. ..|++
T Consensus        81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            99998 3421 1      111  23456778999999999998887777444 44443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.57  E-value=5.7e-07  Score=63.60  Aligned_cols=66  Identities=32%  Similarity=0.473  Sum_probs=55.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .+++++++|+|.|.+|+.++..+... +.+|.++|+                          |+++.+++.    .+.+.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~   69 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVL   69 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCch
Confidence            58899999999999999999999988 568999987                          999999873    23455


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 027577          112 KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~s  128 (221)
                      ++....+++++++++++
T Consensus        70 ~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          70 EEATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHHHhcCCCCEEEecC
Confidence            55677889999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.55  E-value=4.1e-07  Score=79.42  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHH-Hhc---C--ceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLE-KET---G--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~-~~~---g--~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ...++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+ ...   +  +..+.++++++++||+|+.++|..  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            457899999999999999985543 44 5799999986544332 221   3  455678999999999998888743  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ..++..   +.+++|+++.-++.
T Consensus       201 -~pvl~~---~~l~~g~~i~~ig~  220 (314)
T PRK06141        201 -EPLVRG---EWLKPGTHLDLVGN  220 (314)
T ss_pred             -CCEecH---HHcCCCCEEEeeCC
Confidence             455654   34689995554543

>PLN00203 glutamyl-tRNA reductase

Probab=98.55  E-value=1.5e-07  Score=87.20  Aligned_cols=93  Identities=19%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHH-hc-Cc--e--ecCCHHhhcCCCCEEEEeCCCChh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA--K--FEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~-~~-g~--~--~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+....+.+. .+ +.  .  ..+++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4889999999999999999999999997 6999999864443332 22 22  1  23466788899999999987   3


Q ss_pred             hhhcchHHHHhcCCC-------CCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKK-------GVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~-------ga~lIn~s  128 (221)
                      ...++..+.++.+.+       ..+|||.+
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence            345677777776643       13666665

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.54  E-value=3.6e-07  Score=79.66  Aligned_cols=94  Identities=27%  Similarity=0.350  Sum_probs=65.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCC-hhHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~-~~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.+++|+|||.|.||+.+++.++..| .+|++++|++.. .+.+...|....  +++.+.+.++|+|+.++|.... .. 
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~-  253 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AK-  253 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HH-
Confidence            68999999999999999999998866 579999997643 344555565432  3466778899999999984332 22 


Q ss_pred             chHHHHhcC-CCCCEEEEcCC
Q 027577          110 FDKDRIAKM-KKGVLIVNNAR  129 (221)
Q Consensus       110 i~~~~~~~m-k~ga~lIn~sr  129 (221)
                      +.+..++.. +++.++||++.
T Consensus       254 ~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         254 IVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             HHHHHHhhCCCCCeEEEEeCC
Confidence            222233322 35678888764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.54  E-value=3.8e-07  Score=84.04  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=75.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (221)
                      .+.+.++.|+|+|.+|...++.++.+|.+|+++|++....+.++.+|...+  +.                         
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            456789999999999999999999999999999988766666666665431  10                         


Q ss_pred             HHhhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        86 l~ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.+.++++|+|+.++  |..+ ...++.++.++.||+|++|||++-
T Consensus       241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            345578899998877  2211 235788899999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.54  E-value=3.6e-07  Score=78.49  Aligned_cols=80  Identities=24%  Similarity=0.393  Sum_probs=66.8

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +..|.||++.|||.|. +|+.+|..|...|++|++++++.              .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~  214 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL  214 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence            3479999999999988 99999999999999999998632              2678889999999999983    335


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +|+|+++||++--.
T Consensus       215 i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        215 VTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCHHH---cCCCcEEEEcCCCc
Confidence            66654   68999999998644

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.54  E-value=2.3e-07  Score=84.06  Aligned_cols=94  Identities=27%  Similarity=0.426  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .+.|++|+|||+|.||+.+++.|...| .+|++++++.... +.+...+...  ..++.+.+..+|+|+.|++.   ...
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            488999999999999999999999999 6799999976432 2444444322  24667788999999999863   345


Q ss_pred             cchHHHHhcCC----CCCEEEEcCC
Q 027577          109 MFDKDRIAKMK----KGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk----~ga~lIn~sr  129 (221)
                      +++.+.++.+.    ...+++|.+.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence            67776665542    2347777764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.50  E-value=4.9e-07  Score=80.42  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCC-------CeEEEEcCCCCC-----hhHHHh--------------cCceecCCHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLD   87 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~   87 (221)
                      ...++|+|||.|++|.++|..|...|       .+|..|.+++..     .+...+              .++...++++
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            34579999999999999999998766       789999876531     111111              1234457888


Q ss_pred             hhcCCCCEEEEeCCCChhhhhcchHHHHh--cCCCCCEEEEcCCCCccC
Q 027577           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD  134 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~--~mk~ga~lIn~srg~~vd  134 (221)
                      ++++.+|+|++++| +...+.++ ++.-.  .+++++++|+++.|=-.+
T Consensus        89 eav~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         89 EAVEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHHhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            99999999999999 22333333 33333  466788999999884433

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.49  E-value=4.8e-07  Score=79.86  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             EEEEEccCHHHHHHHHHHccCC--------CeEEEEcCCCC--Chh---HHHh--------------cCceecCCHHhhc
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQ---LEKE--------------TGAKFEEDLDTML   90 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~--~~~---~~~~--------------~g~~~~~~l~ell   90 (221)
                      +|+|||.|++|.++|..+...|        .+|..|.+.+.  ..+   ....              .++...+++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998877        89999987320  111   1100              0133457899999


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +++|+|++++| +...+.+ -.+.-..++++..+|+++.|=-
T Consensus        81 ~~ADiIIlAVP-s~~i~~v-l~~l~~~l~~~~~iVs~tKGie  120 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGI-CKQLKGHVKPNARAISCIKGLE  120 (342)
T ss_pred             hcCCEEEEECC-hHHHHHH-HHHHHhhcCCCCEEEEEeCCcc
Confidence            99999999999 2333333 3445556788999999998843

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.48  E-value=3.6e-06  Score=77.37  Aligned_cols=136  Identities=13%  Similarity=0.106  Sum_probs=88.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH----------------h-c--CceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-T--GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~--g~~~~~~l~ell~~aDv   95 (221)
                      ++|+|||+|.+|..+|..|...  |++|+++|.++...+...                + .  .....++.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999866  688999998653322211                1 0  13344567788899999


Q ss_pred             EEEeCCCChhh------------hhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee-CCCCCCC
Q 027577           96 VVVNTPLTEKT------------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPA  160 (221)
Q Consensus        96 Vv~~~p~~~~t------------~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD-V~~~ep~  160 (221)
                      +++|+| ||..            ..+.  -++.-..++++.+||.-|.-.+=..+.+...+.+.. .|.-.. ++.+|=+
T Consensus        82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl  159 (473)
T PLN02353         82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL  159 (473)
T ss_pred             EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence            999996 3321            1221  234566789999999999888777778888777631 111111 2344533


Q ss_pred             CC---CCCCCCCCCeEE
Q 027577          161 PK---DHPWRYMPNQAM  174 (221)
Q Consensus       161 ~~---~~~l~~~~n~~~  174 (221)
                      .+   -+.+...|.+++
T Consensus       160 ~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        160 AEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCCcccccCCCCEEEE
Confidence            33   334555666653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.48  E-value=3.9e-07  Score=82.68  Aligned_cols=93  Identities=26%  Similarity=0.432  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .+.|++|+|||.|.||+.+++.|...|+ +|+++++++.... .+...|...  ..++.+.+.++|+|+.|+|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            4789999999999999999999999998 7999999764433 444455332  245667788999999998733   33


Q ss_pred             cchHHHHhcC-----CCCCEEEEcC
Q 027577          109 MFDKDRIAKM-----KKGVLIVNNA  128 (221)
Q Consensus       109 ~i~~~~~~~m-----k~ga~lIn~s  128 (221)
                      ++..+.++.+     +.+.++||++
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeC
Confidence            4555555443     2345666664

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.44  E-value=8.6e-07  Score=77.77  Aligned_cols=91  Identities=20%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .-+++||||+|.+|+..++.+..  ...+|.+||++....+.+.    +.+  +..+.+.++++++||+|++|+|..   
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence            35899999999999998777643  2357999999865443222    234  445689999999999999999843   


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..++..+   .+|+|+.|..++.-.
T Consensus       204 ~P~~~~~---~l~~g~~v~~vGs~~  225 (325)
T TIGR02371       204 KPVVKAD---WVSEGTHINAIGADA  225 (325)
T ss_pred             CcEecHH---HcCCCCEEEecCCCC
Confidence            4566554   469999999998543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.42  E-value=3.4e-07  Score=72.77  Aligned_cols=97  Identities=20%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce---e-----------------------cCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK---F-----------------------EED   85 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~   85 (221)
                      ..+...+|.|+|.|..|+..++.++.+|++|..+|......+.....+..   .                       ...
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            35777999999999999999999999999999999765333333333221   1                       123


Q ss_pred             HHhhcCCCCEEEEeCC-CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           86 LDTMLPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        86 l~ell~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.+.++.+|+|+.++- .....-.++.++.++.|+++.+|+|+|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            5677788999986432 244556789999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.42  E-value=3.6e-06  Score=74.58  Aligned_cols=140  Identities=19%  Similarity=0.316  Sum_probs=94.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-------------------HHhcC-ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-------------------EKETG-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-------------------~~~~g-~~~~~~l~ell~~aDvV   96 (221)
                      .+|||||+|-||-++|..+...|++|+++|.++...+.                   +.+.| .+..++.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            79999999999999999999999999999987543211                   11122 344455555 4599999


Q ss_pred             EEeCCCChhhh-------hcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC--CceEEEeeC---CCCCCCCC
Q 027577           97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK  162 (221)
Q Consensus        97 v~~~p~~~~t~-------~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g--~i~~a~lDV---~~~ep~~~  162 (221)
                      ++|+| ||-+.       .+.  .+..-..|++|.++|==|.-.+=.++.+..-|.+.  .+. ..-|.   |.+|-..+
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99998 44322       222  23456779999999999988888888888877663  344 33564   35554444


Q ss_pred             CCCCC---CCCCeEECCCCCcCCHH
Q 027577          163 DHPWR---YMPNQAMTPHVSGTTID  184 (221)
Q Consensus       163 ~~~l~---~~~n~~~tPH~a~~t~~  184 (221)
                      .+.+.   +.|.|     |||.|.+
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~  186 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPK  186 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHH
Confidence            44444   34444     3677665

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.41  E-value=1.3e-06  Score=76.44  Aligned_cols=93  Identities=15%  Similarity=0.264  Sum_probs=64.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDvVv~~~p  101 (221)
                      ++|+|||.|.||..+|..|...|.+|.+|+|++...+...+.              ++....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            479999999999999999999999999999864322222210              122335666766 58999999999


Q ss_pred             CChhhhhcchHHHHh-cCCCCCEEEEcCCCC
Q 027577          102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA  131 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~-~mk~ga~lIn~srg~  131 (221)
                       +..+..++. +... .+++++.+|....|=
T Consensus        81 -s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 -TQQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             -HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence             333444332 3333 567778788777764

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.40  E-value=1.3e-06  Score=74.21  Aligned_cols=126  Identities=15%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             HHHHHccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577           51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus        51 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      +|+.|+..|  .+|+++|+++...+.+.+.|+.  ...+ .+.++++|+|++|+|.. .+.. +-++....++++++|++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~-~l~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIED-VLEEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHH-HHHHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHH-HHHHhhhhcCCCcEEEE
Confidence            477787777  7899999987666666667763  2223 57889999999999922 2333 33556677999999999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEee-CCCCC---CCCCCCCCCCCCCeEECCCCCc
Q 027577          127 NARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQ---PAPKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       127 ~srg~~vd~~al~~al~~g~i~~a~lD-V~~~e---p~~~~~~l~~~~n~~~tPH~a~  180 (221)
                      ++.-+.--.+++.+.+. ......+.- -|.+|   |...+..++.-.++++||+-..
T Consensus        78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~  134 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT  134 (258)
T ss_dssp             --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred             eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence            98866555555655555 233333333 23332   2223556788889999999873

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.40  E-value=1.1e-06  Score=77.51  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ++|+|||.|.||..+|..|...| .+..|.+++...+...+.               .+....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999888 677777654322212111               12344677888899999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                       +..++.++ ++....+++++.+|++..|=
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence             33344433 34445678888999998864

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.38  E-value=2.6e-07  Score=76.31  Aligned_cols=110  Identities=11%  Similarity=0.129  Sum_probs=74.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHH--ccCCCeEEE-EcCCCCChh-HHHhcCceecCCHHhhcCC--CCEEEEeCCCChhh--
Q 027577           35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLLY-HDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT--  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l--~~~G~~V~~-~d~~~~~~~-~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t--  106 (221)
                      ..++|+|||+|.+|+.+++.+  ...|+++.+ +|+++.... ......+...+++++++++  .|+|++|+|.+...  
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            456899999999999999863  457888664 676432211 1111112233567787754  99999999966542  


Q ss_pred             -hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       107 -~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                       ..+.......-+...++.+|+.+|.+|+..+|..+|..
T Consensus       163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence             12222223344566788899999999999999988864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.38  E-value=1.3e-06  Score=80.61  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (221)
                      ...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|.+..  +.                         
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            356999999999999999999999999999999998877777778887622  11                         


Q ss_pred             HHhhcCCCCEEEEeCCCChh-hhhcchHHHHhcCCCCCEEEEcCC
Q 027577           86 LDTMLPKCDIVVVNTPLTEK-TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        86 l~ell~~aDvVv~~~p~~~~-t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.+.++.+|+|+.|...... ...++.++.++.||+|.++++++-
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            01123579999998853111 223457889999999999999974

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.38  E-value=3.8e-06  Score=74.32  Aligned_cols=123  Identities=12%  Similarity=0.116  Sum_probs=97.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hhc----CceecCCHHhhc---CCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKFEEDLDTML---PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~~~~~~l~ell---~~aDvVv~~~p~~~~t~  107 (221)
                      ...||+||+|-||+.+|......|++|.+|||+....+.+ ++.    .+....+++|++   +.-.-|++++.......
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            3569999999999999999999999999999987554433 222    233455777764   56778888876432223


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      ..| ++++..|.+|-++||-+...--|+..-.++|.+..|.+.+.-|...|.
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe  133 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE  133 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence            333 467888999999999999999999999999999999999999988774

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.37  E-value=1.8e-06  Score=74.09  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHH-HhcC----ceecCCHHhhcCCCCEEEEeCCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~-~~~g----~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ..+.++++.|+|.|.+|++++..|...| .+|++++|+....+.+ +..+    +....+..+.+.++|+||.++|..
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g  196 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence            4688999999999999999999999999 6899999976433322 2222    111113456778899999999954

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.37  E-value=3.4e-06  Score=72.01  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhc---CceecCCHHh-hcCCCCEEEEeCCCCh--h
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~---g~~~~~~l~e-ll~~aDvVv~~~p~~~--~  105 (221)
                      ...+++++|+|.|.+|++++..+...|++|.+++|+..+.+. .+..   +.....++++ ...++|+|+.++|..-  .
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            356899999999999999999999999999999987543322 2221   2111123433 3357999999999642  1


Q ss_pred             hhh-cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~-~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ... .+.   ...++++.+++|+.-.....  .|.+..++.++.
T Consensus       194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~  232 (270)
T TIGR00507       194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK  232 (270)
T ss_pred             CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence            111 122   24467888888887665433  466666655444

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.34  E-value=6.6e-06  Score=63.60  Aligned_cols=80  Identities=25%  Similarity=0.332  Sum_probs=65.8

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||+|.|+|- ..+|+.++..|...|+.|..++++.              .++++.+++||+|+.+++..    ++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~   84 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK   84 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence            45799999999995 5789999999999999999998632              26778899999999999833    45


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ++.+.   +|+|++++|++...
T Consensus        85 i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          85 VPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             cCHHH---cCCCCEEEEcCCCc
Confidence            76655   68999999997654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.34  E-value=4e-06  Score=67.95  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHH--hcCceec--CC----HHhhcCCCCEEEEeCC
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKFE--ED----LDTMLPKCDIVVVNTP  101 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~~--~~----l~ell~~aDvVv~~~p  101 (221)
                      +.+++||++.|||-+ .+|+.+|..|...|+.|..+|.+.... ...  .......  .+    +.+.+++||+|+.+++
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~-~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV-FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc-cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            458999999999976 589999999999999999997532110 000  0000011  12    7789999999999998


Q ss_pred             CChhhhhc-chHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGM-FDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~-i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .    .++ +..+.   .|+|+++||++-
T Consensus       136 ~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         136 S----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             C----CCCccCHHH---cCCCcEEEEcCC
Confidence            2    344 66655   589999999984

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.33  E-value=2.4e-06  Score=67.45  Aligned_cols=81  Identities=25%  Similarity=0.341  Sum_probs=57.5

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.++..|...|+.|..++...              .++++.+++||+|+.+++    ..++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G----~~~~   92 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVG----KPNL   92 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SS----STT-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeec----cccc
Confidence            457999999999987 499999999999999999988632              367888999999999997    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+   .+|+|+++||++.-..
T Consensus        93 i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   93 IKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             B-GG---GS-TTEEEEE--CEEE
T ss_pred             cccc---cccCCcEEEecCCccc
Confidence            6544   4689999999986544

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=4.7e-06  Score=71.52  Aligned_cols=79  Identities=19%  Similarity=0.331  Sum_probs=65.2

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||.|. +|+.+|..|...|+.|.+++..              ..++++.+++||+|+.+++.    .++
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~----p~~  215 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGK----PGF  215 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCC----ccc
Confidence            4579999999999998 9999999999999999998753              13688899999999999951    134


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..   +.+|+|+++||++--
T Consensus       216 v~~---~~vk~gavVIDvGin  233 (285)
T PRK10792        216 IPG---EWIKPGAIVIDVGIN  233 (285)
T ss_pred             ccH---HHcCCCcEEEEcccc
Confidence            655   446899999999843

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=4.9e-06  Score=71.65  Aligned_cols=80  Identities=23%  Similarity=0.351  Sum_probs=64.9

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||.|. +|++++..|...|++|.++++..              .++.+.++++|+|+.+++ .+.   .
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG-~~~---~  215 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVG-KPE---L  215 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccC-CCC---c
Confidence            4579999999999998 99999999999999999998721              256677789999999996 222   5


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +++|++++|++-..
T Consensus       216 v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        216 IKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             CCHHH---cCCCCEEEEEEEee
Confidence            66544   68999999997543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.27  E-value=3.4e-06  Score=72.38  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=65.8

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||+|.|||-| .+|+.+|..|...|+.|.++....              .++.+.+++||+|+.+++    ..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~  213 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL  213 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence            457999999999999 899999999999999999886421              246788999999999997    3346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.+   |+|+++||++-..
T Consensus       214 i~~~~v---k~GavVIDvGi~~  232 (285)
T PRK14191        214 IKASMV---KKGAVVVDIGINR  232 (285)
T ss_pred             CCHHHc---CCCcEEEEeeccc
Confidence            766654   8999999998644

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.27  E-value=2.8e-06  Score=73.90  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH-HHhc---Ccee-cCCHHhhcCCCCEEEEeCCCChhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL-EKET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~-~~~~---g~~~-~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+. +...   ++.. +.+.+++++++|+|+.|+|.+   
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---  199 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---  199 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence            467899999999999999999854 564 59999997644332 2222   2222 468899999999999999844   


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      ..++..    .+|||+.|..++.-..
T Consensus       200 ~Pl~~~----~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        200 TPVYPE----AARAGRLVVAVGAFTP  221 (304)
T ss_pred             CceeCc----cCCCCCEEEecCCCCC
Confidence            355653    3699999999986544

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.26  E-value=2.9e-06  Score=69.91  Aligned_cols=96  Identities=27%  Similarity=0.447  Sum_probs=67.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCe-EEEEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~-V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|||||+|.||+.+.+.+..-  .++ +.+||++..... .....+....+++++++++.|+|+=|..  ++.   +.+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~A---v~e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEA---VRE   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHH---HHH
Confidence            4799999999999999999753  455 788998764433 3334444455789999999999998876  322   222


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHH
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~a  137 (221)
                      -..+.|+.|.-+|-+|-|.+.|+.-
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChHH
Confidence            2334456777777777788886554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.26  E-value=2.7e-06  Score=76.99  Aligned_cols=91  Identities=16%  Similarity=0.355  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcC-ce--ecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g-~~--~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .+.|++|.|||.|.||+.+++.|...|. ++++++|+....+ .+...+ ..  ..+++.+.+.++|+||.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5889999999999999999999999996 6999999854333 333333 22  2356677889999999999732   3


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .++..+...  .+..++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            445544432  1234555554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.23  E-value=3.1e-06  Score=76.05  Aligned_cols=93  Identities=27%  Similarity=0.428  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +|.++++.|||+|.||.-+|+.|...|. +|++.+|+... .+.+.+++...  .+++.+.+.++|+||.++.   ....
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            4899999999999999999999999995 69999998643 34566677543  4567778899999999975   2344


Q ss_pred             cchHHHHhcC-C--CCCEEEEcC
Q 027577          109 MFDKDRIAKM-K--KGVLIVNNA  128 (221)
Q Consensus       109 ~i~~~~~~~m-k--~ga~lIn~s  128 (221)
                      ++..+.+... +  +.-++||++
T Consensus       252 ii~~~~ve~a~~~r~~~livDia  274 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIA  274 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEec
Confidence            5555444332 1  124666665

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=5.7e-06  Score=71.05  Aligned_cols=79  Identities=27%  Similarity=0.373  Sum_probs=64.9

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||.|. +|+.+|..|...|+.|.+++...              .++.+..++||+|+.++.-    .++
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~  220 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHL  220 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccc
Confidence            4579999999999998 99999999999999999988521              3678889999999998752    245


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+   .+|+|+++||++--
T Consensus       221 i~~~---~vk~gavVIDvGin  238 (287)
T PRK14176        221 IKAD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             cCHH---HcCCCcEEEEeccc
Confidence            6655   46899999999853

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.22  E-value=1.4e-05  Score=68.14  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhc--CceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|||||+|.||+.+++.+... ++++. ++++...........  ++..+.+++++-.+.|+|+.|+|..  ..   -+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~--~~---~e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA--AL---KE   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH--HH---HH
Confidence            4899999999999999998765 56643 344422211111212  4566678888855699999999832  11   22


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~  148 (221)
                      -....|+.|.-++..+-+.+.|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            23344566767776666655543   4466666665544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.21  E-value=4.3e-06  Score=67.74  Aligned_cols=98  Identities=15%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hhc----Cc--ee--c---CCHHhhcCCCCEEEE
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GA--KF--E---EDLDTMLPKCDIVVV   98 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~--~~--~---~~l~ell~~aDvVv~   98 (221)
                      ..++++++.|+|. |.+|+.+++.|...|.+|.+++|+....+.. ...    +.  ..  .   +++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4678999999995 9999999999998999999999865322211 111    11  11  1   223467788999999


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                      ++|....+  ...  .-...+++.+++|+.+...+
T Consensus       104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence            88844321  111  11123446677777665443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=4.4e-06  Score=71.49  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.|+++.|+|.+ ..|+.+|..|...|+.|..+.++.              .++++.+++||+|+.+++..    ++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~l  208 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GF  208 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cc
Confidence            457999999999998 899999999999999999887532              36888899999999999722    56


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +.++.   +|+|+++||++-..
T Consensus       209 v~~~~---vk~GavVIDVgi~~  227 (279)
T PRK14178        209 ITPDM---VKPGATVIDVGINQ  227 (279)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77766   49999999998543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.20  E-value=6.1e-06  Score=72.39  Aligned_cols=89  Identities=21%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~-----~~g~--~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..++++|||+|.+|+..+..+. ..+. +|.+|+|++.+.+.+.     ..++  ..+++++++++++|+|++|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            5789999999999999988764 4565 5899999864433222     2233  34678899999999999999844  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       ..++.    +.+++|+.|+.++.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34554    456999999998764

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.20  E-value=7.9e-06  Score=70.42  Aligned_cols=70  Identities=24%  Similarity=0.233  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcC-------ceecCCHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG-------AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g-------~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+.++++.|+|.|.+|++++..|...|+ +|.++||+..+.+.. +..+       +...+++.+.++++|+||.++|.
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~  202 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT  202 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence            5788999999999999999999999998 699999976433322 2211       11223455677889999999984

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.18  E-value=7.8e-06  Score=71.75  Aligned_cols=88  Identities=26%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             EEEEccCHHHHHHHHHHcc-CCCeEEEEcC-CCCCh-hHHHhcC------------------ceecCCHHhhcCCCCEEE
Q 027577           39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETG------------------AKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g------------------~~~~~~l~ell~~aDvVv   97 (221)
                      |||+|+|.||+.+++.+.. -+++|++++. .+... ..+..++                  +....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6899999999999999764 4688776543 22111 1222222                  222346899999999999


Q ss_pred             EeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .|+|   .+.+..+.+.+..++++++|+..-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            9987   4556788888888998888886543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.17  E-value=2.4e-05  Score=68.20  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=75.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVv~~~p  101 (221)
                      .++|+|||.|.||..+|..|...|++|.++.|+.  .+.....|..              ...+. +....+|+|++|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK   81 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK   81 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence            4689999999999999999999999999999864  2333333321              11122 34578999999998


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l  152 (221)
                      .. ++...+ +.....+++++.++...-| +-.++.+.+.+...++.++..
T Consensus        82 ~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         82 TT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             CC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            43 333222 3344456778888877665 456777777777666665433

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.17  E-value=5e-06  Score=61.72  Aligned_cols=105  Identities=21%  Similarity=0.395  Sum_probs=67.2

Q ss_pred             EEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +|||||+|.+|+.....+...  +.++. ++|+++...+ ..+..++..+++++++++  +.|+|++++|..  .+.-+-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~--~h~~~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS--SHAEIA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG--GHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc--chHHHH
Confidence            799999999999999888765  55654 6787653333 345678888899999997  799999999932  222222


Q ss_pred             HHHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCc
Q 027577          112 KDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       112 ~~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i  147 (221)
                      ...   ++.|. +++.-= --.+-+.+.|.++.++.+.
T Consensus        80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence            233   33343 334321 1233344556666555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.16  E-value=1e-05  Score=71.01  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+.+.+ +.    .++  ..++++++.++++|+|+.++|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            4679999999999999999986 4675 599999986443322 22    243  33578899999999999999853  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ..++..+.   +++|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             35565544   689998888764

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06046 alanine dehydrogenase; Validated

Probab=98.16  E-value=8e-06  Score=71.68  Aligned_cols=88  Identities=26%  Similarity=0.421  Sum_probs=64.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-h----cC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-E----TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-~----~g--~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      -+++||||+|.+|+..++.+.. .+. +|.+||+++...+.+. +    .+  +..+.+++++++ +|+|++|+|..   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            5799999999999999998863 455 4888999764433222 1    24  344678899987 99999999843   


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ..++..+.   +|+|+.|..++.-
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs~  225 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGAD  225 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCCC
Confidence            35666544   5899999988853

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.16  E-value=4.2e-06  Score=72.01  Aligned_cols=95  Identities=18%  Similarity=0.259  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCCCCEEEEeC--CCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT  103 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~ell~~aDvVv~~~--p~~  103 (221)
                      .+..-+|.|||.|-+|..-|+.+..+|.+|...|.+..+....+. ++.+      ....+++.+.++|+||-++  | .
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp-g  243 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP-G  243 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec-C
Confidence            466778999999999999999999999999999987533322222 2222      1245788999999998654  4 2


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ...-.++.++.++.||||++|||++
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE
Confidence            3345578889999999999999995

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.16  E-value=3.1e-05  Score=64.23  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCCC----------CChhHHHhc-CceecC-----CHHhhc-CCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD   94 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~aD   94 (221)
                      +|.|+||.|.|+|++|+.+|+.|...|.+|+ +.|.+.          ...+..++. ++..+.     +.++++ .+||
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   99 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD   99 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence            5889999999999999999999999999755 456543          111111111 122111     123333 4799


Q ss_pred             EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +++-|.+     .+.++.+....++ =.+|+-.+.+.+- . .-.+.|++..+.
T Consensus       100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~  145 (217)
T cd05211         100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTT-D-EALRILHERGIV  145 (217)
T ss_pred             EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcE
Confidence            9999987     3467777777676 3455555555554 4 445666666555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.14  E-value=1.7e-05  Score=67.33  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC---CCeE-EEEcCCCCChhHHHhcCceecCCHHhh-cCCCCEEEEeCCCChhhhhcc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF---NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~---G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvVv~~~p~~~~t~~~i  110 (221)
                      .+||||||+|.||+.+++.+..-   ++++ .++++.+...+.+.. .+..+.+++++ ....|+|+=|..  ++.   +
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v   75 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG--QQA---I   75 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC--HHH---H
Confidence            36899999999999999998653   3554 446664422222222 25667889997 578999999886  222   2


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccC---HHHHHHHHHh
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSS  144 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd---~~al~~al~~  144 (221)
                      -+-....|+.|.-++-.|-|.+.|   .+.|.++.++
T Consensus        76 ~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         76 AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            222233456777888888888887   4445555544

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.14  E-value=2.9e-05  Score=74.91  Aligned_cols=115  Identities=13%  Similarity=0.137  Sum_probs=83.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------Hhc-------------CceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET-------------GAKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..+...|++|..||+++...+..           .+.             .+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            589999999999999999999999999999876432110           000             133445664 4789


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.+.+.. .-+.+++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecC
Confidence            99999999988788777777777888999988665443  556667777653 2334566644

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.14  E-value=2.6e-05  Score=65.12  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCC-------CChhHH----HhcC-------ceecCCHHhhc-C
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLE----KETG-------AKFEEDLDTML-P   91 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~-------~~~~~~----~~~g-------~~~~~~l~ell-~   91 (221)
                      .++.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+.       ...+..    ...+       .... +.++++ .
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~  105 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL  105 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence            3688999999999999999999999999998844 4321       111111    1122       1112 233433 4


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +||+++-|.+     .+.++.+....++  +-+|--+....+. ....+.|+++.+.
T Consensus       106 ~~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~  154 (227)
T cd01076         106 DCDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL  154 (227)
T ss_pred             cccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence            7999999886     4557777777776  4555444444455 5566788887777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=1.3e-05  Score=68.64  Aligned_cols=80  Identities=25%  Similarity=0.374  Sum_probs=65.1

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-| .+|+.+|..|...|+.|..+....              .++.+.+++||+|+.++.    ..++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~~  213 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPNL  213 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----cccc
Confidence            457999999999988 799999999999999998776421              357788999999999997    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++--.
T Consensus       214 i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        214 ITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            76655   57999999998543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.10  E-value=1.1e-05  Score=70.82  Aligned_cols=88  Identities=16%  Similarity=0.278  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHh-----cCce--ecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..++++|||.|.+|+..+..+.. .+ -+|.+|+|+..+.+.+.+     .++.  .+.+++++++++|+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            46899999999999999888874 55 469999998654433221     2343  3578899999999999999843  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       ..++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34565443   57888776654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=98.10  E-value=9e-06  Score=59.43  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      .++|++|.|||.|.+|..-++.|...|.+|+++++..  .......... ...+++.+..+|+|+.+++. ++    +++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-~~----~n~   75 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFSEGLIQLI-RREFEEDLDGADLVFAATDD-PE----LNE   75 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHHHTSCEEE-ESS-GGGCTTESEEEE-SS--HH----HHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-HH----HHH
Confidence            5889999999999999999999999999999999854  1111111111 23456778899999988862 22    344


Q ss_pred             HHHhcCCCCCEEEEcC
Q 027577          113 DRIAKMKKGVLIVNNA  128 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~s  128 (221)
                      ......+.-.+++|++
T Consensus        76 ~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   76 AIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHTTSEEEET
T ss_pred             HHHHHHhhCCEEEEEC
Confidence            4444445455677764

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=2.1e-05  Score=67.51  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=65.9

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.++..              ..++++.+++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG----~p~~  214 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVG----KPKL  214 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecC----CCCc
Confidence            45799999999996 568999999999999999988642              1367888999999999997    2346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.+   |+|+++||++.-.
T Consensus       215 i~~~~i---k~gavVIDvGi~~  233 (284)
T PRK14190        215 ITADMV---KEGAVVIDVGVNR  233 (284)
T ss_pred             CCHHHc---CCCCEEEEeeccc
Confidence            777665   8999999998655

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.08  E-value=1.8e-05  Score=69.20  Aligned_cols=91  Identities=19%  Similarity=0.318  Sum_probs=67.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .-++++|||.|..|+..++.+.. +.. +|.+|+|++...+.+.    ..+  +..+++.++++++||+|+.+++.   +
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---R  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---C
Confidence            36799999999999999987753 333 6999999875543222    223  33467899999999999999873   3


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..+++.+   .+|+|+.|+.++.-.
T Consensus       204 ~P~~~~~---~l~~G~hi~~iGs~~  225 (315)
T PRK06823        204 EPLLQAE---DIQPGTHITAVGADS  225 (315)
T ss_pred             CceeCHH---HcCCCcEEEecCCCC
Confidence            4667654   468999999998543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.07  E-value=9.9e-06  Score=62.69  Aligned_cols=110  Identities=16%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCCCCEEEEeCCCCh
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~ell~~aDvVv~~~p~~~  104 (221)
                      |+|+|.|.||.-+|..|+..|++|.++.+.. ..+...+.|+...              .+..+....+|+|++|+.. .
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence            6899999999999999999999999999865 3444444443221              1112456789999999973 3


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l  152 (221)
                      ++...+.. ....+.+++.++-.--| +-.++.+.+.+....+.++..
T Consensus        79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            34444433 55566677777766555 555667777765556654443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.07  E-value=1.6e-05  Score=71.07  Aligned_cols=104  Identities=18%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcC---c-------eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG---A-------KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++|.|||+|.||+.+|..|.+.| .+|++.||+..+...+....   +       .....+.+++++.|+|+.++|..  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            68999999999999999998888 89999999864444332221   2       12345678899999999999832  


Q ss_pred             hhhcchHHHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577          106 TRGMFDKDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       106 t~~~i~~~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                          ++...+ +.++.|.-.++++-.+.-- -++.+..++.++
T Consensus        80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi  117 (389)
T COG1748          80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI  117 (389)
T ss_pred             ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence                222222 4456777777777654432 344444444433

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.06  E-value=1.8e-05  Score=69.20  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeEEE-EcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ..+|||||+|+||+.+++.+... ++++.+ +++++. .......++....+.++++.+.|+|++|+|....     -+.
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~   76 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPE   76 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHH
Confidence            36899999999999999999765 788665 687631 1222234444445777888999999999994322     234


Q ss_pred             HHhcCCCCCEEEEcCCC--CccC-HHHHHHHHHh-CCce
Q 027577          114 RIAKMKKGVLIVNNARG--AIMD-TQAVVDACSS-GHIA  148 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg--~~vd-~~al~~al~~-g~i~  148 (221)
                      ....|+.|.-+|+..--  .+-+ .+.+.++.++ |++.
T Consensus        77 ~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        77 QAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            44557788888887531  1112 3345555554 5665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.06  E-value=4.5e-05  Score=73.44  Aligned_cols=115  Identities=14%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             CEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLP   91 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~   91 (221)
                      ++|+|||.|.||..+|..+. ..|++|..||+++...+..           .+             ..+...++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            58999999999999999887 5899999999875321110           00             1233445664 578


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.+.+.. .=+.+++.-|
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff  444 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF  444 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence            999999999988787777777777788999888655444  455667777643 2234566655

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=3.3e-05  Score=66.29  Aligned_cols=80  Identities=25%  Similarity=0.342  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++.+.+++||+|+.+++    ..++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~~~~  213 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATG----LAKF  213 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence            458999999999975 589999999999999999887521              357888999999999997    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++--.
T Consensus       214 i~~~~---vk~GavVIDvGin~  232 (284)
T PRK14170        214 VKKDY---IKPGAIVIDVGMDR  232 (284)
T ss_pred             cCHHH---cCCCCEEEEccCcc
Confidence            76655   58999999998654

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.06  E-value=2.8e-05  Score=71.68  Aligned_cols=72  Identities=24%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhh--cCCCCEEEEeCCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTM--LPKCDIVVVNTPLT  103 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~el--l~~aDvVv~~~p~~  103 (221)
                      +.++.+++++|+|.|.+|++++..+...|++|.+++++....+. ....+.... +++++  +.++|+|+.|+|..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence            44678999999999999999999999999999999986533322 222222211 22222  57899999999954

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.06  E-value=1.7e-05  Score=69.64  Aligned_cols=88  Identities=20%  Similarity=0.346  Sum_probs=66.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .|++|+|+|+|..|....+.++++|++|+++|+++.+.+.++++|...+ +     ..+++-+.+|+|+.++| ...   
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~---  241 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT---  241 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence            3999999999999999999999999999999999888888888886532 1     12223334999999988 332   


Q ss_pred             cchHHHHhcCCCCCEEEEcC
Q 027577          109 MFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~s  128 (221)
                       + ...++.|+++..++-++
T Consensus       242 -~-~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         242 -L-EPSLKALRRGGTLVLVG  259 (339)
T ss_pred             -H-HHHHHHHhcCCEEEEEC
Confidence             2 34566777777777653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.04  E-value=3.4e-05  Score=74.61  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..+...|++|..+|+++...+..           .+             ..+....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            589999999999999999999999999999876432110           00             0133445664 5789


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.  -++...|.+.+..- =+..++.-|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p-~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRP-EKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCc-cceEEEeccC
Confidence            9999999998878777777777788899998864433  35667777776542 3345777553

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.6e-05  Score=66.95  Aligned_cols=79  Identities=19%  Similarity=0.347  Sum_probs=65.0

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..++...              .++++..++||+|+.+++    ..++
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~~  215 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPEF  215 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcCc
Confidence            457999999999965 689999999999999999988531              367788999999999997    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+.   .|+|+++||++--
T Consensus       216 i~~~~---ik~gavVIDvGin  233 (284)
T PRK14177        216 IKADW---ISEGAVLLDAGYN  233 (284)
T ss_pred             cCHHH---cCCCCEEEEecCc
Confidence            76655   5899999999854

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=2.7e-05  Score=66.97  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++.+++||+|+.++.    ..++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~~  211 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPHL  211 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence            457999999999964 689999999999999999887521              367888999999999997    2356


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+.   +|+|+++||++--.+
T Consensus       212 i~~~~---vk~GavVIDVGin~~  231 (287)
T PRK14173        212 ITPEM---VRPGAVVVDVGINRV  231 (287)
T ss_pred             cCHHH---cCCCCEEEEccCccc
Confidence            77655   489999999987553

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.02  E-value=3.5e-05  Score=65.42  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=59.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHcc-CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ++|+|+|+ |.||+.+++.+.. -++++. ++|+...........++..+.+++++++.+|+|+.++|  |+..   .+-
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~--p~~~---~~~   76 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT--PEAT---LEN   76 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC--HHHH---HHH
Confidence            58999998 9999999998875 468855 47765433222233455556789999989999998876  3332   222


Q ss_pred             HHhcCCCCCEEEEcCCC
Q 027577          114 RIAKMKKGVLIVNNARG  130 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg  130 (221)
                      ....++.|.-+|-...|
T Consensus        77 ~~~al~~G~~vvigttG   93 (257)
T PRK00048         77 LEFALEHGKPLVIGTTG   93 (257)
T ss_pred             HHHHHHcCCCEEEECCC
Confidence            33345556666644444

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.02  E-value=2.8e-05  Score=68.35  Aligned_cols=90  Identities=7%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ++.+++|.|||.|.||+.+++.|...|. +|++.+|+...... ...   .. ..-++..++|+|+.|+..|.....++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~-~~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~  245 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY-RTV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS  245 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch-hhh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence            5899999999999999999999999996 59999997632111 100   00 111445789999997533333345565


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 027577          112 KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~s  128 (221)
                      .+.++..++ .++||.+
T Consensus       246 ~~~~~~~~~-r~~iDLA  261 (338)
T PRK00676        246 WESLADIPD-RIVFDFN  261 (338)
T ss_pred             HHHHhhccC-cEEEEec
Confidence            555543322 3666654

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.01  E-value=1.4e-05  Score=69.88  Aligned_cols=93  Identities=20%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHH----HhcC--ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE----KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~----~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      -++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+    ...+  +..+++.++++++||+|+.|+|.+..+ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence            4689999999999999998754 555 599999976433322    1223  345689999999999999999854422 


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      .++..+   .+++|+.|+.++....
T Consensus       207 P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  207 PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             ccccHH---HcCCCcEEEEecCCCC
Confidence            566654   5789999999997644

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.9e-05  Score=67.10  Aligned_cols=81  Identities=22%  Similarity=0.321  Sum_probs=65.7

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++.+++||+|+.+++-    .++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~  214 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNL  214 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence            457999999999965 589999999999999998886421              3678889999999999982    346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+.   +|+|+++||++--.+
T Consensus       215 i~~~~---ik~gavVIDvGin~~  234 (297)
T PRK14186        215 IGAEM---VKPGAVVVDVGIHRL  234 (297)
T ss_pred             cCHHH---cCCCCEEEEeccccc
Confidence            76655   589999999986553

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.01  E-value=5.9e-05  Score=65.50  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (221)
                      -++|||||.|.||+.+|..+...|++|..+|+++...+..           .+.|             +....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            4799999999999999999988779999999974321100           0111             12223333 678


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      +||+|+=++|-+.+.+.-+-++.-...+++++|=.-.++  +...++.++++ ..=+..++-.|.
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~-rper~iG~HFfN  143 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALK-RPERFIGLHFFN  143 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhC-CchhEEEEeccC
Confidence            999999999977777777767777778899998544333  55667777773 333446666444

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=3e-05  Score=66.55  Aligned_cols=80  Identities=20%  Similarity=0.322  Sum_probs=65.3

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++..++||+|+.+++    ..++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~~  212 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPHF  212 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457999999999965 589999999999999999886421              267888999999999997    2346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +|+|+++||++--.
T Consensus       213 i~~~~---vk~GavVIDvGin~  231 (282)
T PRK14169        213 IGADA---VKPGAVVIDVGISR  231 (282)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77665   58999999998644

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.01  E-value=2.6e-05  Score=69.81  Aligned_cols=93  Identities=17%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CC-C-eEEEEcCCCCChhH-HH----hc-C---ceecCCHHhhcCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FN-C-NLLYHDRVKMDPQL-EK----ET-G---AKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G-~-~V~~~d~~~~~~~~-~~----~~-g---~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      -++++|||.|..|+..++.+.. +. . +|.+|+|++.+.+. ++    .. +   +..+++.++++++||+|+.|++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            5799999999999999998865 42 3 69999998654332 11    11 2   455689999999999999999754


Q ss_pred             h---hhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          104 E---KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       104 ~---~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +   .+..++..+.   +|+|+.|+.++.-+
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            3   3346676544   68999888776644

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.2e-05  Score=66.22  Aligned_cols=80  Identities=25%  Similarity=0.387  Sum_probs=65.2

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.++..|...|+.|..++...              .++.+..++||+|+.+++    -.++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvG----kp~~  214 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIG----RPKF  214 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            457999999999965 589999999999999999987521              367888999999999997    2346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++--.
T Consensus       215 i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        215 IDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77665   58999999997533

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=3.3e-05  Score=66.27  Aligned_cols=79  Identities=22%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++..++||+|+.++.    -.++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~~  213 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVNL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            457999999999965 589999999999999999887532              368888999999999997    2356


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+.   .|+|+++||++--
T Consensus       214 i~~~~---vk~GavVIDvGin  231 (282)
T PRK14166        214 LRSDM---VKEGVIVVDVGIN  231 (282)
T ss_pred             cCHHH---cCCCCEEEEeccc
Confidence            77665   5899999999853

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.98  E-value=3.6e-05  Score=66.92  Aligned_cols=91  Identities=11%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~-~~----~g--~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ +.    .+  +..+.+.++++.+||+|+.++|.+  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            36899999999999999888754 444 599999986543322 11    24  445678999999999999998843  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                       ..++..+   .+|||+.+.-++...
T Consensus       194 -~P~~~~~---~l~pg~hV~aiGs~~  215 (301)
T PRK06407        194 -TPIFNRK---YLGDEYHVNLAGSNY  215 (301)
T ss_pred             -CcEecHH---HcCCCceEEecCCCC
Confidence             4667655   457998888877543

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.98  E-value=2.8e-05  Score=68.56  Aligned_cols=98  Identities=31%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHcc-CC-CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .++++++|.|+|. |.||+.+++.|.. .| .++++++|+...... ..+.+.....++++.+.++|+|+.++...   .
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~  227 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---K  227 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---c
Confidence            4689999999998 8999999999964 56 478899986533322 22222112346888999999998776522   2


Q ss_pred             h-cchHHHHhcCCCCCEEEEcCCCCccCH
Q 027577          108 G-MFDKDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       108 ~-~i~~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      . +++.+.   ++++.++||+++-.=||.
T Consensus       228 ~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        228 GVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            3 366654   478999999998766654

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=66.06  Aligned_cols=79  Identities=23%  Similarity=0.328  Sum_probs=64.3

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++.+..++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~~  214 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPNF  214 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcCc
Confidence            457999999999965 589999999999999999887532              367778899999999998    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+.   .|+|+++||++--
T Consensus       215 i~~~~---vk~gavVIDvGin  232 (282)
T PRK14180        215 ITADM---VKEGAVVIDVGIN  232 (282)
T ss_pred             CCHHH---cCCCcEEEEeccc
Confidence            76655   5899999999853

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.96  E-value=4.8e-05  Score=66.77  Aligned_cols=88  Identities=22%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHHH-----hcC--ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~-----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      -++++|||.|..++..++.++. ++. +|.+|+|++...+.+.     ..+  +..+.+.+++++.||+|+.|+|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            5689999999999999998864 555 5999999875544322     223  4567899999999999999998554  


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .++..+.   ++||+.|..++.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             6676655   579999999985

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.95  E-value=4.2e-05  Score=66.12  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=65.8

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...              ..++++.+++||+|+.++..    .++
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~~  223 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AMM  223 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cCc
Confidence            458999999999975 58999999999999999998752              13678899999999999972    356


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +|+|+++||++--.
T Consensus       224 i~~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        224 IKGDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             cCHHH---cCCCCEEEEeeccc
Confidence            77655   58999999998544

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=4.5e-05  Score=65.79  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.++..|...|+.|..+....              .++.+.+++||+|+.+++    ..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~  216 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF  216 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457999999999965 589999999999999999888532              367888999999999997    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++-..
T Consensus       217 i~~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        217 VKYSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            77655   47999999997543

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.94  E-value=7.6e-05  Score=65.35  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhH--H---Hh---cC----ceecCCHHhhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL--E---KE---TG----AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~--~---~~---~g----~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +..+||+|||.|.||..+|..+...| .++..+|.+....+.  .   ..   .+    +....+++ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            46789999999999999999988777 689999986532211  1   00   11    22234666 679999999998


Q ss_pred             --CCChh-hh--------hcch--HHHHhcCCCCCEEEEcCC
Q 027577          101 --PLTEK-TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       101 --p~~~~-t~--------~~i~--~~~~~~mk~ga~lIn~sr  129 (221)
                        |..+. ++        .++.  .+.+....|.+++|+++-
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              43320 00        1111  122344467888998864

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.94  E-value=3.7e-05  Score=68.04  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      -++++|||.|..++..++.+. -+.. +|.+|+|++...+.+.    ..+  +..+++.++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            578999999999999887664 3444 5999999865433221    123  445689999999999999999732 222


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .++..+   .+|+|+.|.-++.
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             ceecHH---HcCCCcEEEecCC
Confidence            456554   4689999888774

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.93  E-value=4e-05  Score=62.72  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=67.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC---CCCh---------------h----HHHhcC----cee--
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDP---------------Q----LEKETG----AKF--   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~---~~~~---------------~----~~~~~g----~~~--   82 (221)
                      ..|..++|+|+|+|.+|..+|+.|...|. ++.++|+.   ....               +    ...+..    +..  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            36889999999999999999999999998 59999876   1100               0    000111    111  


Q ss_pred             ----cCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577           83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus        83 ----~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                          .++++++++++|+|+-| ..+.+++..+.......++...++..
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                02345678899999988 57888898888888887876666664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.93  E-value=0.00011  Score=66.83  Aligned_cols=111  Identities=17%  Similarity=0.258  Sum_probs=72.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC--------CChhHH------------------HhcCceecC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE------------------KETGAKFEE   84 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~~~------------------~~~g~~~~~   84 (221)
                      +.+|.|+||.|.|+|++|...|+.|..+|++|+++..+.        ...+..                  ...++... 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-  301 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-  301 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence            457999999999999999999999999999998743311        111100                  01123333 


Q ss_pred             CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCC-CCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +.++++ ..|||++-|.     +.+.|+.+....++. ++.+|--+.-.++..++.... .+..|.
T Consensus       302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L-~~rgI~  361 (444)
T PRK14031        302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF-QDAKIL  361 (444)
T ss_pred             CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH-HHCCcE
Confidence            334443 4699988775     366788877777754 555565555557777766444 444444

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=4.6e-05  Score=65.56  Aligned_cols=79  Identities=22%  Similarity=0.301  Sum_probs=64.5

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.++..|...|+.|..+....              .++.+.+++||+|+.++.    -.++
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~  215 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK  215 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence            347999999999965 589999999999999999887421              367888999999999997    2356


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+.   .|+|+++||++--
T Consensus       216 i~~~~---vk~GavVIDvGin  233 (288)
T PRK14171        216 LTAEY---FNPESIVIDVGIN  233 (288)
T ss_pred             cCHHH---cCCCCEEEEeecc
Confidence            77655   5899999999843

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=5.1e-05  Score=65.05  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.++..|...++.|..+....              .++++..++||+|+.+++-    .++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~  213 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence            457999999999965 589999999999999999887521              3677888999999999972    456


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++--.
T Consensus       214 i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        214 VKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             cCHHH---cCCCCEEEEeecee
Confidence            77665   57999999998544

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.93  E-value=4.4e-05  Score=67.33  Aligned_cols=80  Identities=13%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...++.|..+....              .++++.+++||+|+.++.    ..++
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~~  287 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPNM  287 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            457999999999965 589999999999999999887521              367888999999999997    2346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   .|+|+++||++--.
T Consensus       288 i~~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        288 VRGSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             CCHHH---cCCCCEEEeccccc
Confidence            77665   58999999998544

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.92  E-value=5.3e-05  Score=65.95  Aligned_cols=116  Identities=22%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ++|+|||.|.||..+|..+...|. +|+.+|....... ...+         .  .+....++++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988775 8999998543211 1100         0  1233457776 78999999998731


Q ss_pred             hh-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHHHHHH--HHhCCceEEE--ee
Q 027577          104 EK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD  153 (221)
Q Consensus       104 ~~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~al~~a--l~~g~i~~a~--lD  153 (221)
                      ..           +..++..  +.+....+++++|+++.-.=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           1111111  12333457889999875332333334444  4445555554  55

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=5.5e-05  Score=64.98  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      +.++.||++.|||- ..+|+.+|..|..  .++.|.++...              ..++++.+++||+|+.+++.    .
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGk----p  214 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGV----A  214 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCC----c
Confidence            45799999999996 4689999999987  78999888752              13688889999999999972    2


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +++..+.   +|+|+++||++.-.
T Consensus       215 ~~i~~~~---ik~GavVIDvGin~  235 (284)
T PRK14193        215 HLVTADM---VKPGAAVLDVGVSR  235 (284)
T ss_pred             CccCHHH---cCCCCEEEEccccc
Confidence            4677655   58999999998654

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.91  E-value=5.1e-05  Score=56.80  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             EEEEEc-cCHHHHHHHHHHccC-CCeEEEE-cCCCCChhHHH-hcC-ce--ecCCH--Hhh-cCCCCEEEEeCCCChhhh
Q 027577           38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK--FEEDL--DTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        38 ~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~-~~g-~~--~~~~l--~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      +++|+| .|.+|+.+++.+... ++++.++ ++.....+... ..+ +.  ...+.  +++ ..++|+|++|+|.... .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence            589999 599999999999874 7776665 43321111111 111 11  00111  122 2589999999995432 2


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..+. .....+++|+++|+++.
T Consensus        80 ~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       80 EIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HHHH-HHHhhhcCCCEEEECCc
Confidence            2222 23455789999999973

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.91  E-value=0.0003  Score=59.60  Aligned_cols=115  Identities=15%  Similarity=0.223  Sum_probs=73.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cC-------CCCChhHH-------Hhc------------CceecC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR-------VKMDPQLE-------KET------------GAKFEE   84 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~-------~~~~~~~~-------~~~------------g~~~~~   84 (221)
                      .+|.|+||.|.|+|++|+.+|+.|...|++|+++ |.       .....+..       ...            +.+.. 
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-  112 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-  112 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-
Confidence            4789999999999999999999999999998843 42       21111111       011            12333 


Q ss_pred             CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +.++++ .+|||++-|.     +.+.|+.+....++ +++ +|+-.+-+.+ .. +-.+.|.++.|. .+=|+.
T Consensus       113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~-vvPD~l  178 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL-FAPGKA  178 (254)
T ss_pred             CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE-EECchh
Confidence            344444 4699998875     46778888777774 234 5555555555 44 455677777776 344443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.91  E-value=4.9e-05  Score=66.72  Aligned_cols=80  Identities=15%  Similarity=0.278  Sum_probs=65.1

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....              .++++..++||+|+.+++    ..++
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~~  270 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPNL  270 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457999999999965 589999999999999998887522              257888999999999997    2346


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +|+|+++||++--.
T Consensus       271 v~~d~---vk~GavVIDVGin~  289 (345)
T PLN02897        271 VRGSW---LKPGAVVIDVGTTP  289 (345)
T ss_pred             cCHHH---cCCCCEEEEccccc
Confidence            77655   58999999998644

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.90  E-value=5.3e-05  Score=73.08  Aligned_cols=115  Identities=13%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..+...|++|..+|+++...+...           +             ..+....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5899999999999999999999999999998754322100           0             013334555 44799


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ||+|+=++|-+.+.+.-+-.+.-+.++++++|-..+.+  ++..+|...++. .=+..++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff  452 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF  452 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC
Confidence            99999999977777777777777788999998665443  556667776653 2233456544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=6.5e-05  Score=64.57  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||-+ .+|+.+|..|...    +..|..+....              .++++.+++||+|+.+++.   
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~---  210 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV---  210 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence            457999999999975 5899999999877    78888876421              3688889999999999972   


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                       .+++..+.   +|+|+++||++--.
T Consensus       211 -p~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        211 -PLFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             -cCccCHHH---cCCCCEEEEecccc
Confidence             34677655   58999999998644

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.87  E-value=5.8e-05  Score=72.81  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=83.2

Q ss_pred             CEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhHH-----------Hh-------------cCceecCCHHhhcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLE-----------KE-------------TGAKFEEDLDTMLP   91 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~~-----------~~-------------~g~~~~~~l~ell~   91 (221)
                      ++|+|||.|.||..+|..+. ..|++|..+|+++...+..           .+             ..+...+++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999987 7899999999875322111           00             013344566 4579


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +||+|+=++|-+.+.+.-+-.+.-+.++|+++|...+.+  +....|.+.+... -+.+++.-|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence            999999999988787777777777788999999765544  5666777776532 234567755

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.87  E-value=0.00023  Score=53.21  Aligned_cols=100  Identities=20%  Similarity=0.314  Sum_probs=66.9

Q ss_pred             CEEEEEc----cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      |+|+|||    -+..|..+.+.|++.|++|+.+++....     -.|...+.+++|.-...|++++++| .+.+..+++ 
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~-   73 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVD-   73 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHH-
Confidence            6899999    7889999999999999999999986522     2366677889884478999999999 223333333 


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      + +..+....+++..+    ..++++.+.+++..+.
T Consensus        74 ~-~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   74 E-AAALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             H-HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             H-HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            2 23346678888877    6778888888888777

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.84  E-value=0.00016  Score=64.44  Aligned_cols=110  Identities=17%  Similarity=0.231  Sum_probs=80.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH----------------Hhc---C-ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----------------KET---G-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~----------------~~~---g-~~~~~~l~ell~~aDvV   96 (221)
                      |+|.|+|.|-+|...+..+..+|++|+.+|..+.+.+..                ++.   | ....++.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            689999999999999999999999999999865432211                111   1 34557889999999999


Q ss_pred             EEeCCCChhhhhcc--------hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577           97 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus        97 v~~~p~~~~t~~~i--------~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      ++|+|..+.-.+-+        -++..+.++..+++|+-|.-.+=..+.+.+.+.+..
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            99998433223322        234566677779999999988777777776655544

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.83  E-value=6.3e-05  Score=64.19  Aligned_cols=110  Identities=28%  Similarity=0.367  Sum_probs=80.5

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.+|+|+++.|||-++ +|+.++..|...++.|.++....              .++.+..++||+|+.++-    -.++
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~  212 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF  212 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence            3478999999999886 69999999999999999998632              367788899999999986    2355


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT  182 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t  182 (221)
                      +..+   ..|+|+++|+++--.+-+          +++   .=||-..+..        ...-.+||--||.-
T Consensus       213 i~~d---~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v~--------~~a~~iTPVPGGVG  261 (283)
T COG0190         213 IKAD---MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSVK--------EKASAITPVPGGVG  261 (283)
T ss_pred             cccc---cccCCCEEEecCCccccC----------Cce---EeeccHHHHH--------HhhcccCCCCCccC
Confidence            6544   468999999998654433          333   4566444321        12235889888763

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=8.1e-05  Score=64.01  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||-+ .+|+.++..|..    .++.|..+....              .++.+.+++||+|+.+++    
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG----  213 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG----  213 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence            457999999999965 589999999988    788888887421              368889999999999996    


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..+++..+.+   |+|+++||++-
T Consensus       214 ~p~li~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        214 RPRFVTADMV---KPGAVVVDVGI  234 (286)
T ss_pred             CCCcCCHHHc---CCCCEEEEeee
Confidence            3456777665   89999999974

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=9.6e-05  Score=63.89  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|..+....              .++++.+++||+|+.++.    
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG----  217 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG----  217 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC----
Confidence            45899999999996 46899999999876    68888876421              367888999999999986    


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..+++..+.   +|+|+++||++--.
T Consensus       218 kp~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        218 VPNLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CcCccCHHH---cCCCCEEEecCCCc
Confidence            234576655   58999999998644

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=0.00011  Score=63.38  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=63.6

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|.++....              .++.+.+++||+|+.+++    
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvG----  213 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALG----  213 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            457999999999965 5899999999876    68888886422              367888999999999997    


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..+++..+.   .|+|+++||++--.
T Consensus       214 kp~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        214 QPEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CcCccCHHH---cCCCCEEEEecCcc
Confidence            234576655   58999999998643

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.79  E-value=0.00014  Score=59.60  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCCCCEEEEeCCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~  103 (221)
                      .+|.|++|.|||.|.+|...++.|...|++|.++++.....  +.+....+...  .-.++.+..+|+|+.++...
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~   81 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP   81 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence            47999999999999999999999999999999998754221  11111112211  11234578899998888743

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=9.8e-05  Score=63.82  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=63.7

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||-+ .+|+.+|..|..    .+..|..+....              .++++.+++||+|+.+++..  
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~--  217 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA--  217 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc--
Confidence            457999999999965 589999999876    578888776532              25788899999999999622  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                        +++..+.+   |+|+++||++-..
T Consensus       218 --~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        218 --RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             --CccCHHHc---CCCCEEEEeeccc
Confidence              56877775   8999999997443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.78  E-value=0.00019  Score=62.34  Aligned_cols=114  Identities=11%  Similarity=0.066  Sum_probs=73.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec-----------CCHHhhcCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-----------EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-----------~~l~ell~~aDvVv~~~p~~  103 (221)
                      -++|+|+|.|.||.-+|-.|...|.+|.+++|.....+...+ .|+...           ....+....+|+|++|+...
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~   81 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY   81 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence            368999999999999999999999999999986433332222 122110           01112245789999999732


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l  152 (221)
                       ++...+ +.....+.+++.+|-.-- ++-.++.+.+.+.+.++.++..
T Consensus        82 -~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         82 -DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             -hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEe
Confidence             333332 345566778888877644 4556677777776666654433

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.77  E-value=0.00011  Score=55.03  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             EEEEEc-cCHHHHHHHHHHccC-CCe-EEEEcCCC-CChhHHHhcC-------ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           38 TVGTVG-CGRIGKLLLQRLKPF-NCN-LLYHDRVK-MDPQLEKETG-------AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        38 ~vgIIG-~G~iG~~iA~~l~~~-G~~-V~~~d~~~-~~~~~~~~~g-------~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ||+||| .|.+|+.+++.|... .++ +.+++++. .........+       ....+...+.+.++|+|++|+|..  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--~   78 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--A   78 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--H
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--H
Confidence            699999 999999999999763 445 44455544 1111111111       111111234459999999999922  2


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..-+....   +++|..+|+.|.
T Consensus        79 ~~~~~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   79 SKELAPKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             HHHHHHHH---HHTTSEEEESSS
T ss_pred             HHHHHHHH---hhCCcEEEeCCH
Confidence            22222222   578999999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.77  E-value=0.00016  Score=62.37  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~   69 (221)
                      .+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            57799999999999999999999999996 99999975

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.77  E-value=8.2e-05  Score=63.24  Aligned_cols=171  Identities=13%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             EEEEcc-CHHHHHHHHHHccCC----CeEEEEcCCCCChhHH--------H---hcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLE--------K---ETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        39 vgIIG~-G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~--------~---~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      |+|||. |.+|..+|..+...|    .+|..+|.++...+..        .   ...+...+++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999988777    6899999865332211        0   11233445667889999999996531


Q ss_pred             C--h---------hhhhcch--HHHHhcCCCCCEEEEcCCCCccCHH--HHHHH--HHhCCceEEE-eeCCCCCCCCC--
Q 027577          103 T--E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQ--AVVDA--CSSGHIAGYS-GDVWNPQPAPK--  162 (221)
Q Consensus       103 ~--~---------~t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~~--al~~a--l~~g~i~~a~-lDV~~~ep~~~--  162 (221)
                      .  +         .+..++.  .+.+....|++++||.+  .++|.-  .+.+.  +...++.|.+ +|...-.-.-.  
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la~~  158 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEK  158 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHHHH
Confidence            1  0         1111111  12334456899999995  555533  34444  4567788888 77532100000  


Q ss_pred             -CCCCCCC-CCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCccccc
Q 027577          163 -DHPWRYM-PNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIV  211 (221)
Q Consensus       163 -~~~l~~~-~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~  211 (221)
                       +-+--+. -.++--.|-.....-  .+.+..+.+.+++++.++.. .+++.++
T Consensus       159 l~v~~~~v~~~v~G~hg~~~~~~~s~~~~a~~~~~ii~ai~~~~~~~~~v~v~~  212 (263)
T cd00650         159 LGVDPDDVKVYILGEHGGSQVPDWSTVRIATSIADLIRSLLNDEGEILPVGVRN  212 (263)
T ss_pred             hCCCccceEEEEEEcCCCceEeccccchHHHHHHHHHHHHHcCCCEEEEEEEEe
Confidence             0000000 011222222111000  12566677888888887655 5556554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.00018  Score=63.09  Aligned_cols=124  Identities=12%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhc---CCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell---~~aDvVv~~~p~~~~t~  107 (221)
                      -..||+||++-||+.++-.....|+.|.+|+|+....+.+..     ..+....++++++   +.-.+|++.+.......
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD   85 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD   85 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence            357999999999999999999999999999998654432211     1133345788775   56778888876555554


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .+| +++...|.+|-+||+-+...--|+..-.+.|....|-..+.-|...|.-
T Consensus        86 ~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEG  137 (487)
T KOG2653|consen   86 QFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEG  137 (487)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccc
Confidence            444 4677889999999999999999999999999999999899999887753

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.76  E-value=0.00011  Score=53.95  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (221)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (221)
                      +-+..+++.|+..|++|.+|||.-.......   ..++...+++++.++.+|+|+++++. ++...+-..+....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence            3577899999999999999999653322222   14677778999999999999999983 3344443455667788899


Q ss_pred             EEEEc
Q 027577          123 LIVNN  127 (221)
Q Consensus       123 ~lIn~  127 (221)
                      +||++
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.76  E-value=0.00044  Score=62.97  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=76.4

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE   83 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~   83 (221)
                      +.+|.|+||.|-|+|++|+..|+.|...|++|++        ||+.....+..   .               .. +.+.+
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            3479999999999999999999999999999998        77654333221   0               11 33333


Q ss_pred             CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                       +.++++ .+|||++-|.     +.+.|+.+....+. .++ +|+-.+-+ ++..++- +.|.+..|. .+=|+.
T Consensus       303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~  368 (445)
T PRK14030        303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKA  368 (445)
T ss_pred             -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcce
Confidence             334444 4699888776     46678777766662 234 55555555 6666544 666666666 344443

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00016  Score=62.59  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=63.2

Q ss_pred             ccCCCCCEEEEEccC-HHHHHHHHHHccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|..+....              .++++..++||+|+.++.    
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG----  213 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG----  213 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            457999999999965 5899999999766    78888876421              367888999999999886    


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      -.+++..+.   +|+|+++||++-..
T Consensus       214 kp~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        214 VPELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CcCccCHHH---cCCCCEEEEccccc
Confidence            234677655   58999999998544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.73  E-value=0.00014  Score=59.69  Aligned_cols=91  Identities=20%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCCCCEEEEeCCCChhhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~-g~~~~--~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .+|.|++|.|||.|.+|..-++.|...|++|.++++...+. ....+. .+...  .--.+.+..+|+|+.++...+   
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~---   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE---   81 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence            36899999999999999999999999999999999864321 111122 23221  111345788999888876322   


Q ss_pred             hcchHHHHhcCCCCCEEEEc
Q 027577          108 GMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~  127 (221)
                        ++.......+.-.++||+
T Consensus        82 --ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        82 --LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             --HHHHHHHHHHHcCCEEEE
Confidence              233333334444566665

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.73  E-value=0.00012  Score=55.23  Aligned_cols=102  Identities=22%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHcc-CCCeE-EEEcCCCCC---hhH-----HHhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMD---PQL-----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~-~G~~V-~~~d~~~~~---~~~-----~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++|+|+|+ |+||+.+++.+.. -++++ .+++++...   .+.     ....++...++++++++++|+|+-.+  +|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            48999999 9999999999987 68884 456775411   111     11345666789999999999998776  343


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      .-.-.-+.   .++.+..+|-...|---.+.+.++.+.
T Consensus        79 ~~~~~~~~---~~~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   79 AVYDNLEY---ALKHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             HHHHHHHH---HHHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             HhHHHHHH---HHhCCCCEEEECCCCCHHHHHHHHHHh
Confidence            32212122   234477777777776433434444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.73  E-value=0.00026  Score=64.57  Aligned_cols=116  Identities=16%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE-cCCC-------CChhHHH----h-------c----CceecCCHH
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLEK----E-------T----GAKFEEDLD   87 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~~~-------~~~~~~~----~-------~----g~~~~~~l~   87 (221)
                      +.+|.|+||+|.|+|++|+.+|+.|..+|++|+++ |.+.       ...+...    .       +    +.+.. +.+
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~  305 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG  305 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence            34689999999999999999999999999998877 5221       1111110    0       0    12222 344


Q ss_pred             hhcC-CCCEEEEeCCCChhhhhcchHHHHhcCC-CCC-EEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        88 ell~-~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga-~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +++. +|||++-|..     .+.++.+....++ +++ +|+-.+-+.+ ..+ -.+.|.++.|. .+=|+.
T Consensus       306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~-~vPD~l  368 (445)
T PRK09414        306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL-FAPGKA  368 (445)
T ss_pred             cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE-EECchh
Confidence            4444 6999998886     4556666555552 234 5555555665 443 55677777666 334433

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.72  E-value=0.00023  Score=60.04  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE--------cCCCCChhHHH----hcCc--eecC----------CHH-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA--KFEE----------DLD-   87 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g~--~~~~----------~l~-   87 (221)
                      ++.|+|+.|-|+|++|+.+|+.|...|++|++.        |+.....+...    +.+.  ..+.          +-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999997765        54332222111    1222  1111          221 


Q ss_pred             hhc-CCCCEEEEeCCCChhhhhcchHHHHh-cCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus        88 ell-~~aDvVv~~~p~~~~t~~~i~~~~~~-~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +++ .+||+++-|.-     .+.|+.+... .+++++-+|--+.-..+..++.. .|.+..|. ..=|
T Consensus       109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD  169 (244)
T PF00208_consen  109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPD  169 (244)
T ss_dssp             HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-H
T ss_pred             ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcc
Confidence            555 57999999853     4668887777 77777777766666666666665 78877776 3444

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.72  E-value=0.00012  Score=59.89  Aligned_cols=61  Identities=18%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ++|+|||. |.||+.+++.++..|+.|.                          +++||+|++|+|-. .+..     .+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~-----~i   48 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALN-----YI   48 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHH-----HH
Confidence            48999997 9999999999999999885                          36899999999922 2222     23


Q ss_pred             hcCCCCCEEEEcCCCC
Q 027577          116 AKMKKGVLIVNNARGA  131 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~  131 (221)
                      +.+.  .+++|++.-+
T Consensus        49 ~~~~--~~v~Dv~SvK   62 (197)
T PRK06444         49 ESYD--NNFVEISSVK   62 (197)
T ss_pred             HHhC--CeEEeccccC
Confidence            3333  3788998644

>PLN02477 glutamate dehydrogenase

Probab=97.71  E-value=0.00054  Score=61.94  Aligned_cols=114  Identities=19%  Similarity=0.305  Sum_probs=74.5

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEE-EcCC-------CCChhHHHh----c-------CceecCCHHhh-c
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRV-------KMDPQLEKE----T-------GAKFEEDLDTM-L   90 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~-------~~~~~~~~~----~-------g~~~~~~l~el-l   90 (221)
                      +.+|.|+||+|.|+|++|+.+|+.|...|.+|++ .|.+       ....+...+    .       +.+.+ +.+++ .
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~  279 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILV  279 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCcccee
Confidence            3478999999999999999999999999999884 4443       111221111    0       11222 23333 3


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      .+||+++-|.-     .+.|+.+....++ -.+|+-.+-+.+ .. +-.+.|++..|. .+=|+
T Consensus       280 ~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~  334 (410)
T PLN02477        280 EPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDI  334 (410)
T ss_pred             ccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChH
Confidence            57999987753     5578888877775 356666666766 44 345778887776 33443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.71  E-value=9.8e-05  Score=63.56  Aligned_cols=70  Identities=13%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHhcC----ceecC---CHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG----AKFEE---DLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~~g----~~~~~---~l~ell~~aDvVv~~~p~  102 (221)
                      .+.++++.|||.|.+|++++..|...|+ +|.+++|+..+.+. +...+    +....   ++.+.+.++|+||.|+|.
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence            4679999999999999999999999998 59999997543332 22221    11121   233556789999999984

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.70  E-value=0.00014  Score=60.66  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--cCceec-------CCHHhh-cCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~-------~~l~el-l~~aDvVv~~~p~~~~  105 (221)
                      |++.|||+|.+|+.+|+.|...|++|+++|+.+...+....  .+...+       +.|+++ +.++|+++.++..+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            68999999999999999999999999999987644333112  333211       234444 6789999999985443

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.66  E-value=0.00044  Score=54.47  Aligned_cols=94  Identities=17%  Similarity=0.324  Sum_probs=67.2

Q ss_pred             CCCEEEEEc--cCHHHHHHHHHHccCCCeEEEEcCCC--CCh--hHH-------HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVK--MDP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG--~G~iG~~iA~~l~~~G~~V~~~d~~~--~~~--~~~-------~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .|+||++||  .+++.++++..+..+|+++.++.+..  -..  +..       ...|  +....++++.++++|+|...
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            488999999  38999999999999999999998865  122  111       1223  45568999999999999887


Q ss_pred             CCC----Chh-------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~p~----~~~-------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .-.    .+.       ....++.+.++.++++++|+.+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            653    111       11346778888888888888764

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.0001  Score=63.93  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHHhcCceec----CC---HHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE----ED---LDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~----~~---l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .|+.+||+|+|.+|.--.+.+++||++|+++|++. .+.+..+.+|.+.+    .+   .+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            79999999999999999999999999999999876 44455555776422    11   123445556665555421  1


Q ss_pred             hhcchHHHHhcCCCCCEEEEc
Q 027577          107 RGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .+-+ +..++.||++..+|-+
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLV  278 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEE
Confidence            2222 3455667776666654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.64  E-value=0.00046  Score=63.22  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      -+.+++|+|+|+|..|.++|+.|+..|++|.++|.+....     +.+...|+...  ....+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            3668999999999999999999999999999999764211     22445566542  2234556889999887 43322


Q ss_pred             hhhc-----------chH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          106 TRGM-----------FDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       106 t~~~-----------i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      +...           +.+ +.+... +...+-|.-+.|+--..+-+...|+...
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            2111           111 122222 2234556666788777776777776533

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.63  E-value=0.0004  Score=60.38  Aligned_cols=95  Identities=18%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhH-HHhc-------C--ce-ecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G--AK-FEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g--~~-~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ++|+|||.|.+|+.+|..|...|  .+|.++|++....+. +.++       +  .. ...+.+ .+++||+|++++...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence            48999999999999999998888  479999987643221 1111       1  11 123444 578999999998642


Q ss_pred             hh---h--------hhcch--HHHHhcCCCCCEEEEcCCCCccC
Q 027577          104 EK---T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       104 ~~---t--------~~~i~--~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                      ..   +        ..++.  .+.+....+.+++|+++  .++|
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d  121 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD  121 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence            11   1        11111  12234456788999987  4444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.61  E-value=0.0006  Score=58.93  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCC---Chh-HHHhcC------ceecCCH------HhhcCCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETG------AKFEEDL------DTMLPKCD   94 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~---~~~-~~~~~g------~~~~~~l------~ell~~aD   94 (221)
                      .++.++++.|+|.|..+++++..|...|. +|.+++|+..   +.+ .++..+      +.. .++      .+.+.++|
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASAD  198 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCC
Confidence            45789999999999999999999988887 6999999753   111 222221      111 122      23456789


Q ss_pred             EEEEeCCC
Q 027577           95 IVVVNTPL  102 (221)
Q Consensus        95 vVv~~~p~  102 (221)
                      +|+.++|.
T Consensus       199 ivINaTp~  206 (288)
T PRK12749        199 ILTNGTKV  206 (288)
T ss_pred             EEEECCCC
Confidence            99998883

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.61  E-value=0.00041  Score=60.19  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCCeEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----CCCEEEEeCCCChh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  105 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDvVv~~~p~~~~  105 (221)
                      ..+|||||.|+||+.++..+.. -++++. ++|+++...  ..+++.|+.. +.+.+++++     +.|+|+.++|.  .
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a--~   81 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSA--G   81 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCH--H
Confidence            4689999999999997777654 356754 566655322  4456678765 467888884     58999999983  2


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ...-.   .....+.|..+|+-+
T Consensus        82 ~H~e~---a~~a~eaGk~VID~s  101 (302)
T PRK08300         82 AHVRH---AAKLREAGIRAIDLT  101 (302)
T ss_pred             HHHHH---HHHHHHcCCeEEECC
Confidence            22112   223356788888876

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.60  E-value=0.0003  Score=62.23  Aligned_cols=65  Identities=28%  Similarity=0.355  Sum_probs=44.3

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCCeEEEE-cCCCCChh-HHHh------------------cCceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKE------------------TGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~-d~~~~~~~-~~~~------------------~g~~~~~~l~ell~~aDv   95 (221)
                      .+|||+|+|.||+.+++.+.. -++++.+. |+++.... .+..                  .++....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            489999999999999998864 46786665 43321111 1111                  123334567888889999


Q ss_pred             EEEeCC
Q 027577           96 VVVNTP  101 (221)
Q Consensus        96 Vv~~~p  101 (221)
                      |+.|+|
T Consensus        82 VIdaT~   87 (341)
T PRK04207         82 VVDATP   87 (341)
T ss_pred             EEECCC
Confidence            999998

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.60  E-value=0.00029  Score=61.43  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHcc-------CCCeEEEEcCCCC--C--hhHHHh-----------------cCceecC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKM--D--PQLEKE-----------------TGAKFEE   84 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~-------~G~~V~~~d~~~~--~--~~~~~~-----------------~g~~~~~   84 (221)
                      +-.-++|+|||.|++|+++|+.+..       |..+|..|-....  .  ....+-                 .++..+.
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3456799999999999999998853       2334554433221  1  111111                 0234568


Q ss_pred             CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ++.+++.+||+++..+|.+  -..-+-++...+.|+++..|+...|=
T Consensus        98 dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             hHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecce
Confidence            9999999999999999932  22224567888899999999998873

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.59  E-value=0.00028  Score=61.92  Aligned_cols=66  Identities=20%  Similarity=0.341  Sum_probs=47.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---c----CceecCCHHhhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +..+||+|||.|.||..+|..+...|. +|.++|.++....     ....   .    .+....++ +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            445799999999999999999887785 8999998764221     1111   1    12333566 4679999999976

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.59  E-value=0.00024  Score=64.35  Aligned_cols=109  Identities=13%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh--------
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~--------  107 (221)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++..........+-......+...+++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            468999999999999999999999999999976532211110000111233444578999888775433211        


Q ss_pred             --hcchH-HH-Hhc--C-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          108 --GMFDK-DR-IAK--M-KKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       108 --~~i~~-~~-~~~--m-k~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                        .++.+ +. +..  + +...+=|--+.|+--..+-+...|+.
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence              12222 11 111  1 11235566667877766667777765

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.57  E-value=0.00019  Score=63.29  Aligned_cols=63  Identities=22%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc--eec---CCHHhhcCCCCEEEE
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--KFE---EDLDTMLPKCDIVVV   98 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~--~~~---~~l~ell~~aDvVv~   98 (221)
                      ++||||||-|..|+.++...+.+|+++++.|+.+..+...-...+  ..+   ..+.++++.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999987654432111111  112   247788999999987

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.56  E-value=0.0007  Score=59.20  Aligned_cols=66  Identities=23%  Similarity=0.256  Sum_probs=46.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh----cCcee-cCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE----TGAKF-EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~----~g~~~-~~~l~ell~~aDvVv~~~p  101 (221)
                      .++||+|||.|.+|..+|..+...|.  ++..+|++....+     ....    ..+.. ..+. +.+++||+|+++.-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence            46799999999999999999988887  7999998653221     1111    01111 2333 55899999999764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.55  E-value=0.00021  Score=64.92  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec-------CCHHhh-cCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-------~~l~el-l~~aDvVv~~~p~~~~  105 (221)
                      |+|.|+|+|.+|+.+++.|...|++|.++|+++...+.+++ .++...       ..++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            57999999999999999999999999999987654444433 343221       234445 7889999999985443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.53  E-value=0.00041  Score=61.42  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhc----Cc--eecC--CHHhhcCCCCEEEEeCCCCh
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKET----GA--KFEE--DLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~----g~--~~~~--~l~ell~~aDvVv~~~p~~~  104 (221)
                      ++|+|+|. |.+|+.+++.|..+ +.++. +++++....+ .....    +.  ..+.  +.+++++++|+|++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            48999998 99999999999877 66777 4454321111 11111    11  0111  4566667899999999932 


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....+. ..   ..+.|..+|+.|.
T Consensus        80 ~s~~~~-~~---~~~~G~~VIDlS~  100 (346)
T TIGR01850        80 VSAELA-PE---LLAAGVKVIDLSA  100 (346)
T ss_pred             HHHHHH-HH---HHhCCCEEEeCCh
Confidence            222221 11   2356899999983

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.53  E-value=0.00054  Score=59.06  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=57.1

Q ss_pred             CEEEEEccCHHHHHHHHHHc-cCCCeEE-EEcCCCCC--hhHHHhcCcee-cCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAKF-EEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~~-~~~l~ell~--~aDvVv~~~p~~~~t~~~  109 (221)
                      .+|||||.|+||+.++..+. .-++++. ++|+++.+  ...+++.|+.. ..+.+++++  +.|+|++++|..  ++. 
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H~-   78 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AHA-   78 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HHH-
Confidence            47999999999999876665 3456755 46766543  24566677753 457888885  588999999933  221 


Q ss_pred             chHHHHhcCCCCCEEEEcC
Q 027577          110 FDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~s  128 (221)
                        +-....++.|..+++-.
T Consensus        79 --e~a~~al~aGk~VIdek   95 (285)
T TIGR03215        79 --RHARLLAELGKIVIDLT   95 (285)
T ss_pred             --HHHHHHHHcCCEEEECC
Confidence              12233355677775544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.51  E-value=0.0019  Score=58.96  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHH---H-----------h-----cCceec
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE---K-----------E-----TGAKFE   83 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~---~-----------~-----~g~~~~   83 (221)
                      +.+|.|+||.|-|+|++|+..|+.|...|.+|+ +.|.+       ....+..   .           .     .+.+.+
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            457999999999999999999999999999988 44443       1111111   0           0     022333


Q ss_pred             CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       +.++++ -.||+.+-|.     +.+.|+.+....+ +.++.+|--+....+..+| .+.|++..|.
T Consensus       312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI~  371 (454)
T PTZ00079        312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGVI  371 (454)
T ss_pred             -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCcE
Confidence             223333 4699988775     4566777766655 5566676666655666644 4566666665

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.51  E-value=0.00081  Score=59.51  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=74.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCC-hhhhhcc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMF  110 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~-~~t~~~i  110 (221)
                      -.+|||||+ .+|+..++.++..  ++++. ++|++... .+.++++|+..+.++++++++.|++++++|.+ +...|  
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H--   79 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG--   79 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH--
Confidence            368999999 6899999988765  47754 56776533 34556678877889999999999999998732 21111  


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a  150 (221)
                      .+-..+.|+.|..++.=-=-..-+.++|.++.++.++...
T Consensus        80 ~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        80 SALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            2223445566655554322223456668888888777733

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.50  E-value=0.00089  Score=58.07  Aligned_cols=63  Identities=24%  Similarity=0.374  Sum_probs=44.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-H----Hh---cC----ceecCCHHhhcCCCCEEEEeC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-E----KE---TG----AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~----~~---~g----~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +||+|||.|.||..+|..+...|. +|.++|+++...+. .    ..   .+    +....+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence            689999999999999999987664 89999986532211 1    11   01    11224554 579999999986

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.50  E-value=0.00079  Score=52.98  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC-ceec-CCH-HhhcCCCCEEEEeCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKFE-EDL-DTMLPKCDIVVVNTP  101 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~~-~~l-~ell~~aDvVv~~~p  101 (221)
                      .+|+|++|.|||.|.+|...++.|...|++|.++++.. ..+ ..+++ +... ..+ ++-+.++|+|+.++.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~~~-l~~l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-CKE-MKELPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-CHH-HHhccCcEEEecccChhcCCCceEEEECCC
Confidence            47999999999999999999999999999999997642 222 22222 1110 111 234678899888876

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00079  Score=57.97  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=60.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcC---c-eecCCHHhh--cCCCCEEEEeCCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG---A-KFEEDLDTM--LPKCDIVVVNTPLT  103 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g---~-~~~~~l~el--l~~aDvVv~~~p~~  103 (221)
                      ....|+++.|+|.|..+++++..|+..|. +|.+++|+..+.+.+ +..+   . .......++  ..++|+||.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            35568999999999999999999999996 699999976443322 2222   1 001122222  22699999999954


Q ss_pred             hhhh--h-cchHHHHhcCCCCCEEEEcCCC
Q 027577          104 EKTR--G-MFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       104 ~~t~--~-~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      -.-.  . .+.   ...++++.++.++--.
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~  228 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYN  228 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence            3321  1 222   3445666666665433

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.0011  Score=59.40  Aligned_cols=107  Identities=21%  Similarity=0.406  Sum_probs=73.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-CC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-PK   92 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~ell-~~   92 (221)
                      +|+|+||+|-|+|++|+..|+.|...|.+|++++.+..                  .. ......+.+.+.. ++++ .+
T Consensus       204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~  282 (411)
T COG0334         204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD  282 (411)
T ss_pred             CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence            48999999999999999999999989999998876543                  11 1111224455533 5555 47


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                      ||+.+-|.     +.+.|+.+....++.. +|+-.+.+.+- .++--..++.|-+
T Consensus       283 cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl  330 (411)
T COG0334         283 CDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL  330 (411)
T ss_pred             CcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence            99887665     4667888888888765 66666666654 4444444455533

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.48  E-value=0.00022  Score=64.83  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=46.5

Q ss_pred             CEEEEEccCHHHHHHHH---HH---ccCCCeEEEEcCCCCChhHH--------Hhc----CceecCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLE--------KET----GAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~---~l---~~~G~~V~~~d~~~~~~~~~--------~~~----g~~~~~~l~ell~~aDvVv~   98 (221)
                      .+|+|||.|++|.+.+.   .+   ...|.+|..||+++...+..        ...    .+....++++.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998554   22   34467999999876432211        111    23345688899999999999


Q ss_pred             eCC
Q 027577           99 NTP  101 (221)
Q Consensus        99 ~~p  101 (221)
                      ++|
T Consensus        81 ai~   83 (423)
T cd05297          81 TIQ   83 (423)
T ss_pred             eeE
Confidence            998

linked to 3D####ucture

>PRK11579 putative oxidoreductase; Provisional

Probab=97.47  E-value=0.00051  Score=60.58  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             CEEEEEccCHHHHH-HHHHHcc-CCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+|.||+. .+..++. -++++. ++|++..  ...... +...+.+++++++  +.|+|++|+|.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            48999999999984 5666654 368865 4676532  122223 3455689999996  58999999994

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.47  E-value=0.0015  Score=56.70  Aligned_cols=111  Identities=13%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh-------
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~-------  107 (221)
                      .|++++|||-=.--..+++.|.+.|++|.++.-...  + ....|+..+++.+++++++|+|+.-+|.+.+..       
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            378999999999999999999999999987654221  1 123367766678899999999999888643221       


Q ss_pred             ---hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577          108 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus       108 ---~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                         --++.+.++.|+++.+++ ++.+.   .. +-+.+.+.++.  .+|..
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~--~~~~~  121 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK--LVELF  121 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe--EEEEe
Confidence               113578899999998555 33332   22 44566677777  34544

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.45  E-value=0.0013  Score=56.11  Aligned_cols=107  Identities=21%  Similarity=0.266  Sum_probs=63.8

Q ss_pred             CEEEEEc-cCHHHHHHHHHHcc-CCCeEE-EEcCCCC-C--hhHHH-----hcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D--PQLEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~--~~~~~-----~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .+|+|+| +|.||+.+++.+.. -++++. ++|+... .  .+...     ..++..+++++++...+|+|+.++|  |+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence            4899999 69999999999874 578855 4674321 1  11111     1345666788888667999999987  33


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      ..   .+.....++.|.-+|-...|--. +.+.|.++.++..+.
T Consensus        80 ~~---~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~  120 (266)
T TIGR00036        80 GV---LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIA  120 (266)
T ss_pred             HH---HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence            22   22233345566555554445322 233355555554443

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.44  E-value=0.00096  Score=61.06  Aligned_cols=113  Identities=14%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC--CCC-h----h
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~--p~~-~----~  105 (221)
                      ++.|++|.|+|+|..|.++|+.|...|++|.++|............|+.....-.+.+.++|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            47799999999999999999999999999999996533222234456653221123356899887643  211 1    1


Q ss_pred             hh---h----cchH-HHHhc-C-----CCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          106 TR---G----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       106 t~---~----~i~~-~~~~~-m-----k~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ..   .    ++.+ +.+.. +     +...+-|.-+.|+--...-|...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            11   0    1221 22222 2     223455666788888777777778753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.44  E-value=0.00067  Score=49.94  Aligned_cols=86  Identities=23%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhhhcc
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~~~i  110 (221)
                      |.|+|+|.+|+.+++.|+..+.+|+++|.++...+.+.+.++..+    .+.+.    -++++|.|+++++....+  +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence            569999999999999999977799999987655555666665422    22222    247899999999844433  23


Q ss_pred             hHHHHhcCCCCCEEEE
Q 027577          111 DKDRIAKMKKGVLIVN  126 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn  126 (221)
                      -...++.+.+...++-
T Consensus        79 ~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   79 IALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHCCCCeEEE
Confidence            2334455555555553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.43  E-value=6.3e-05  Score=62.24  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=77.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC------------------ceecC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG------------------AKFEE   84 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g------------------~~~~~   84 (221)
                      -.=+.|+|||.|.||..+|+.....|+.|..+|.+......+.+           .+                  ++..+
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            34567999999999999999999999999999987643221110           00                  12235


Q ss_pred             CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +..++++++|+|+=+.--+.+.+.-+-++.-...|+.+++. |+|.   +...++..++++... .++|-.|.+-|
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP  160 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP  160 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence            66777888888876554333332223333334456777764 4443   456677777766544 47888776544

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.42  E-value=0.00058  Score=59.16  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=43.0

Q ss_pred             EEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh---c----CceecCCHHhhcCCCCEEEEeCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---T----GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~----g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      |+|||.|.||..+|..+...|. +|+++|+++....     ....   .    .+....+.+ .+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence            6899999999999999886665 9999998754211     1110   0    112234554 5899999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.42  E-value=0.00069  Score=59.61  Aligned_cols=90  Identities=13%  Similarity=0.234  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC---CCChhHHHhcCceecCC----HHh--hcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--ll~~aDvVv~~~p~~~~  105 (221)
                      .|.+|.|+|.|.+|...++.++..|++|++++++   +...+.++++|+..+..    ..+  .....|+|+-++... .
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence            6899999999999999999999999999999873   33445666777654321    111  123579998888621 1


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          .-.+.++.++++..++.++.
T Consensus       251 ----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             ----HHHHHHHHccCCcEEEEEec
Confidence                22456777888888887764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.42  E-value=0.00041  Score=64.12  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC--CHHhhcCCCCEEEEeCCCChhhh----
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTR----  107 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--~l~ell~~aDvVv~~~p~~~~t~----  107 (221)
                      +.|++|.|+|+|..|.+.++.|+..|++|+++|..+...+.+++.|+....  ...+.++++|+|+.+..-.+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            568999999999999999999999999999999754333334455765431  23455678998887653222211    


Q ss_pred             ------hcchHHHH--hcC------CC-CCEEEEcCCCCccCHHHHHHHHHh
Q 027577          108 ------GMFDKDRI--AKM------KK-GVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       108 ------~~i~~~~~--~~m------k~-ga~lIn~srg~~vd~~al~~al~~  144 (221)
                            .++.+-.+  ...      ++ ..+-|.-+.|+--...-+.+.|+.
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                  11222111  111      02 234466667887777767777765

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.41  E-value=0.0015  Score=60.33  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----------------------Cc
Q 027577           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA   80 (221)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~   80 (221)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+.-...+.....                      ++
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999997          4478889999999999999999863222111111                      12


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHH
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~  139 (221)
                      ....+++++++.+|+|++++... +.+.+--+.....|++..+|+|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            44556778999999999999743 33333233445667766689985 43 45655553

>PRK10206 putative oxidoreductase; Provisional

Probab=97.41  E-value=0.00041  Score=61.29  Aligned_cols=66  Identities=20%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             EEEEEccCHHHHH-HHHHH-cc-CCCeEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--CCCEEEEeCCCC
Q 027577           38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        38 ~vgIIG~G~iG~~-iA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~ell~--~aDvVv~~~p~~  103 (221)
                      +|||||+|.+++. .+..+ .. -++++. ++|+++...+.....+ +..+++++++++  +.|+|++++|..
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~   75 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   75 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            7999999998753 45544 32 357765 5787654333444444 556678999995  589999999943

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.41  E-value=0.00081  Score=67.05  Aligned_cols=89  Identities=16%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccC-CCe-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHhhc---C
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDTML---P   91 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~~~-~~~-g~---~~-~~~l~ell---~   91 (221)
                      ..++|+|||+|.||+.+|+.|... +.+             |.+.|++....+.+ +.. ++   .. +.+.+++.   +
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            477999999999999999999754 333             88888865333322 222 32   22 34555544   6


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ++|+|++|+|..  ....+   ....++.|..+++.+
T Consensus       648 ~~DaVIsalP~~--~H~~V---AkaAieaGkHvv~ek  679 (1042)
T PLN02819        648 QVDVVISLLPAS--CHAVV---AKACIELKKHLVTAS  679 (1042)
T ss_pred             CCCEEEECCCch--hhHHH---HHHHHHcCCCEEECc
Confidence            899999999942  22112   223334555555554

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.40  E-value=0.0015  Score=56.91  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|+||++||-   +++.++++..+..+|+++.+..|....++...  ......+++++++++|+|....
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence            488999999996   69999999999999999999987543222111  2355689999999999997743

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.40  E-value=0.00088  Score=58.71  Aligned_cols=91  Identities=22%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---CCCEEEEeCCCCh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE  104 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~---~aDvVv~~~p~~~  104 (221)
                      ..|++|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+     .+++++..   ..|+|+-++.. +
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~  246 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P  246 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence            368999999999999999999999998 58889887766777778886432     12333332   27898888762 1


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .    .....++.++++..++.++.
T Consensus       247 ~----~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        247 S----SINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H----HHHHHHHHhhcCCEEEEEcc
Confidence            1    12346677899999998874

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.40  E-value=0.002  Score=55.96  Aligned_cols=67  Identities=22%  Similarity=0.368  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCC--Chh---HHHhcCc--eecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGA--KFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~---~~~~~g~--~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.||+++|-   +++.++++..+..+|++|.+..|...  +.+   .+++.|.  ....++++.++.+|+|...
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence            488999999997   59999999999999999999987643  222   2223343  3468999999999999774

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.40  E-value=0.00055  Score=59.66  Aligned_cols=68  Identities=26%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             CCEEEEEccCHHHH-HHHHHHccCC--Ce-EEEEcCCCCC-hhHHHhcCce-ecCCHHhhcCC--CCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMD-PQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~-~iA~~l~~~G--~~-V~~~d~~~~~-~~~~~~~g~~-~~~~l~ell~~--aDvVv~~~p~~  103 (221)
                      -.+|||||+|.++. ..+..++..+  +. +.++|+++.. ...+++.++. .+.+++++++.  .|+|++++|..
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~   78 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA   78 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence            35899999997765 5788887765  34 5567887644 3355667774 67799999976  69999999943

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.35  E-value=0.00098  Score=57.45  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-Hhc----C---ceecC--CHHhhcCCCCEEEEeCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----G---AKFEE--DLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g---~~~~~--~l~ell~~aDvVv~~~p  101 (221)
                      .+.++++.|+|.|..|++++..|...|+ +|.++||+..+.+.. ...    +   +....  +.++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            5678999999999999999999999997 589999975433322 211    1   11111  12345567899999888


Q ss_pred             C
Q 027577          102 L  102 (221)
Q Consensus       102 ~  102 (221)
                      .
T Consensus       204 ~  204 (283)
T PRK14027        204 M  204 (283)
T ss_pred             C
Confidence            3

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.34  E-value=0.00064  Score=55.66  Aligned_cols=93  Identities=20%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC--c--e--
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG--A--K--   81 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g--~--~--   81 (221)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|+.....                   +    ...+.+  +  .  
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 688998762110                   0    011111  1  1  


Q ss_pred             --ec--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        82 --~~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                        ..  .+++++++++|+|+.|+. +.+++..+++...+.   +..+|..+
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~---~ip~i~~~  143 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL---GTPLISAA  143 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence              11  234567888999888874 566666666554443   33455543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.34  E-value=0.0021  Score=56.83  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccC----------CCeEE-EEcCCCC-------ChhH----HHhcCc-e------ecCCHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKM-------DPQL----EKETGA-K------FEEDLD   87 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~----------G~~V~-~~d~~~~-------~~~~----~~~~g~-~------~~~~l~   87 (221)
                      .+|+|+|+|.||+.+++.+...          +++|. ++|++..       ..+.    ....+. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998654          46654 4564321       1111    111121 1      123778


Q ss_pred             hhc--CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (221)
Q Consensus        88 ell--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~  148 (221)
                      +++  .+.|+|+.|+|....+...-..-....|+.|..+|....+.+ ...++|.++.++..+.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            888  468999999995443322222223556778888887655444 2456788877776665

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=97.34  E-value=0.0011  Score=55.88  Aligned_cols=96  Identities=14%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             HHHHHHHHccCCCeEEEEcCCCCC--h---hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCC
Q 027577           48 GKLLLQRLKPFNCNLLYHDRVKMD--P---QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (221)
Q Consensus        48 G~~iA~~l~~~G~~V~~~d~~~~~--~---~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga  122 (221)
                      |..+|-.+...|++|+..+++..-  .   +...+.|++.+++-.+.++++.+.++.+|....|.+ |.++.+..+..|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~-Iarei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFG-IAREILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHH-HHHHHHhhCcCCc
Confidence            677888888999999999987532  2   233456888888888999999999999998887766 4567899999999


Q ss_pred             EEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          123 LIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       123 ~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ++.|+..-+.+   .|+..| ++.++
T Consensus       112 VicnTCT~sp~---vLy~~L-E~~Lr  133 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL-EGELR  133 (340)
T ss_pred             EecccccCchh---HHHHHh-hhhhc
Confidence            99999876544   566666 34443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.33  E-value=0.0011  Score=58.62  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC-CCeEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCCCCEEEEeCCCChhh
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDvVv~~~p~~~~t  106 (221)
                      ++|+|+|. |.+|+.+++.+... ++++.. .++...........+ +.     .+.++++ ..+++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            68999996 99999999999876 677654 554322111111111 10     1223332 45789999999994221 


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .. +   ....++.|..+||.|..
T Consensus        82 ~~-~---v~~a~~aG~~VID~S~~  101 (343)
T PRK00436         82 MD-L---APQLLEAGVKVIDLSAD  101 (343)
T ss_pred             HH-H---HHHHHhCCCEEEECCcc
Confidence            11 2   12223578999999844

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.33  E-value=0.0006  Score=60.20  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC---------------------hh----HHHhc--Cc--e
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKET--GA--K   81 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~--g~--~   81 (221)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|+....                     .+    ...+.  ++  .
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999998 68888875310                     00    01111  11  1


Q ss_pred             ec------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           82 FE------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        82 ~~------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ..      .+++++++++|+|+.++ .+.+++.+++.-..
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~  138 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ  138 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence            11      34577888999998887 46677766665443

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.31  E-value=0.0016  Score=56.83  Aligned_cols=113  Identities=14%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHhc------CceecCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKET------GAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      -.||+|||.|.+|..+|..+...|.  ++..+|.+....+     .....      .+....+.++ +++||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence            3599999999999999998876664  6999998653221     11111      1222346665 8999999997542


Q ss_pred             Ch---hhhh-cc--hH-------HHHhcCCCCCEEEEcCCCCccCHHH--HHHH--HHhCCceEEE
Q 027577          103 TE---KTRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDTQA--VVDA--CSSGHIAGYS  151 (221)
Q Consensus       103 ~~---~t~~-~i--~~-------~~~~~mk~ga~lIn~srg~~vd~~a--l~~a--l~~g~i~~a~  151 (221)
                      .+   .++. ++  +.       +.+....+.+++|+++  .++|.-+  +.+.  +...++.|.+
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence            11   1221 11  11       2233447789999998  4444322  2332  3345555553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.31  E-value=0.00075  Score=55.69  Aligned_cols=90  Identities=24%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH---HhcCce---ecCCHHhhcCCCCEEEEeCCCChh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAK---FEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~---~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .+|.|++|.|||.|.+|..=++.+...|.+|+++.+.. ..+..   ...++.   ...+.++ +..+++|+.+++..+ 
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~-   84 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE-   84 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence            47999999999999999999999999999999999865 33221   111211   1123333 344999999997333 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                          +++..+...++-.++||+.
T Consensus        85 ----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          85 ----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             ----HHHHHHHHHHHhCCceecc
Confidence                5555555556666777763

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=97.29  E-value=0.0022  Score=55.84  Aligned_cols=67  Identities=24%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh--hH----HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL----EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~----~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|+++|- +++.++++..+..+|++|.+..|.....  +.    ++..|  +....+++++++++|+|..-
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            488999999996 8899999999999999999998754222  22    23345  44567999999999999875

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.29  E-value=0.0074  Score=51.80  Aligned_cols=168  Identities=13%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccC----CC-------eEEEEcCCCC----Ch-------hHHHhcCceecCCHHh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DP-------QLEKETGAKFEEDLDT   88 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~-------~~~~~~g~~~~~~l~e   88 (221)
                      +..|...||.|+|.|.-|..+|+.+...    |.       +++.+|+...    ..       ..++...-....+|.|
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e   99 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE   99 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence            4568899999999999999999998766    77       6888887631    11       1111111012358999


Q ss_pred             hcC--CCCEEEEeCCCChhhhhcchHHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeeCCCCCCC
Q 027577           89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA  160 (221)
Q Consensus        89 ll~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~--~g~-i~~a~lDV~~~ep~  160 (221)
                      +++  ++|+++=+..    ..++|.++.++.|.   +..+|.=.|.-....|..=.++.+  +|+ |.+.+.-.-..+..
T Consensus       100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~  175 (279)
T cd05312         100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN  175 (279)
T ss_pred             HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence            999  8898876542    23789999999998   889999999876643433333333  455 43222211011110


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH-------HHHHHHHHHHHHHHHcCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID-------LRYAAGVKDMLDRYFKGE  202 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~-------~~~~~~~~~~~~~~~~g~  202 (221)
                      .....--+..|+++-|=++-....       ..|.....+.|..+..-+
T Consensus       176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~  224 (279)
T cd05312         176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE  224 (279)
T ss_pred             CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc
Confidence            011112355789999988643332       444445556666665443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.28  E-value=0.00077  Score=63.30  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~~  108 (221)
                      .++-|+|+|++|+.+++.|+..|.++++.|.+++..+.+++.|...+    .+.+-    -++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            46789999999999999999999999999987765566666665422    22221    24689999999987666554


Q ss_pred             cchHHHHhcCCCCCEEEE
Q 027577          109 MFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn  126 (221)
                      ++..  ...+.+...+|-
T Consensus       498 iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        498 IVAS--AREKRPDIEIIA  513 (558)
T ss_pred             HHHH--HHHHCCCCeEEE
Confidence            4432  223345555554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0011  Score=57.88  Aligned_cols=95  Identities=8%  Similarity=-0.012  Sum_probs=69.6

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCCh-------hH-----------HHhc-------------CceecCC--HHhhcCCC
Q 027577           47 IGKLLLQRLKPFNCNLLYHDRVKMDP-------QL-----------EKET-------------GAKFEED--LDTMLPKC   93 (221)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~-------~~-----------~~~~-------------g~~~~~~--l~ell~~a   93 (221)
                      ||..+|..+...|++|.+||+++...       +.           ..+.             .+....+  +.+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            68899999999999999999987321       00           0011             1222322  56788999


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      |+|+-++|.+.+.+..+-.+..+.++++++|.+  .-+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence            999999999888888887778888999999954  444566777777764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.28  E-value=0.00082  Score=58.54  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHhc-Cce--------ecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.+|..+|..|...|  .+|.++|++....+ .+.++ ...        ...+. +.+++||+|+++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            47999999999999999998888  57999998753322 11111 111        11344 558999999999884

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.28  E-value=0.002  Score=58.87  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=80.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      +.+|+|.|+|+|.-|.++++.|.+.|++|+++|.++...    ......++...  ....+...++|+|+..-. -+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence            459999999999999999999999999999999765441    11112343322  112256788999988632 12111


Q ss_pred             h-----------cc-hHHHHhcC--CCCCEEEEcCCCCccCHHHHHHHHHh--------CCceEEEeeCCCCCC
Q 027577          108 G-----------MF-DKDRIAKM--KKGVLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQP  159 (221)
Q Consensus       108 ~-----------~i-~~~~~~~m--k~ga~lIn~srg~~vd~~al~~al~~--------g~i~~a~lDV~~~ep  159 (221)
                      .           ++ +-+++-..  +.-.+-|.-+.|+.-.+.-+...|++        |.|...++|+.++++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            1           12 22233332  22244455667887777667766665        777888889887743

>PLN02342 ornithine carbamoyltransferase

Probab=97.26  E-value=0.0027  Score=56.24  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh--hH---HHhcC---ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL---EKETG---AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~---~~~~g---~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|+||++||- .++.++++..+..+|++|.+..|.....  +.   ++..|   +....+++++++++|+|....
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~  267 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV  267 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence            488999999995 5799999999999999999998754221  11   22223   455689999999999998763

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.25  E-value=0.0022  Score=55.81  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-h-H-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~-~-------~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.||+++|- +++.++++..+..+|++|.+..|..... + .       +...|  +....++++.++++|+|..-
T Consensus       145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            488999999995 7899999999999999999998754221 1 1       12334  34567999999999999874

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.0015  Score=56.44  Aligned_cols=67  Identities=19%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEc---cCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|++|+|+|   +|+..++.++.|+.+|.+|.++.|.....     +.....|  +...+..++.++++||+.+.
T Consensus       155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            48999999999   99999999999999999999999865333     3333333  23355666699999999664

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.24  E-value=0.0011  Score=62.80  Aligned_cols=92  Identities=21%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhh----cCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDvVv~~~p~~~~t~  107 (221)
                      ..+|.|+|+|++|+.+++.|...|.++++.|.++...+.+++.|...+    ++.+-+    +++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            457999999999999999999999999999987766666666665421    222211    568999999999665554


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+.  ...+.+.|...+|--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            433  23444566766665544

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.24  E-value=0.00086  Score=60.18  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHh-c------CceecCCHHh-hcCCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKE-T------GAKFEEDLDT-MLPKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~-~------g~~~~~~l~e-ll~~aDvVv~~~p~~  103 (221)
                      -..++|+|+|. |.+|+.+.+.|... +++|..+.+.....+.... .      ....+.+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45669999995 99999999999877 6787777653221111111 0      0111122222 258899999999932


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHH
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ  136 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~  136 (221)
                            ...+....|+.|+.+|+.|..--.+.+
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~  142 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDI  142 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence                  333344445678999999865544444

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.24  E-value=0.0011  Score=56.53  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCH---Hh----hc--CCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----ll--~~aDvVv~~~p~~  103 (221)
                      ..|++|.|+|.|.+|...++.++.+|.+ |++.++++.+.+.++++|+..+-+.   .+    +.  ...|+++-++...
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~  198 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT  198 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence            3689999999999999999999999997 8888876655666677776432111   11    11  2367777665421


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .     .-...+..++++..++.++
T Consensus       199 ~-----~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       199 A-----AVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             H-----HHHHHHHHhcCCCEEEEec
Confidence            1     1123456667777777664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK04148 hypothetical protein; Provisional

Probab=97.24  E-value=0.00071  Score=51.81  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=53.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-----cCCHHhhcCCCCEEEEeCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+++++.+||+| -|..+|..|+..|++|++.|.++...+.++..++..     ++.--++.+.+|+|...-|.
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            356899999999 899999999999999999999876666565555432     22334677889999888873

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.22  E-value=0.0017  Score=56.65  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee------------cCCHHhhcCCCCEEEEeCCCCh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF------------EEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~------------~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      +||.|+|.|.||.-++..|...|..|.++.|.+. .+..++.|...            .....+.+..+|+|++++.. -
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence            5899999999999999999999977888887553 34444444321            11223556689999999873 2


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCC-CCCCCCCeEECCCCCcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH-PWRYMPNQAMTPHVSGTT  182 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~-~l~~~~n~~~tPH~a~~t  182 (221)
                      ++...+ +.....+++.+.|+-.-- ++=.++.+.+.....++- .++..+...-..+.+ .......+.+.+..++.+
T Consensus        79 q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          79 QLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             cHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            333333 445566777877775533 344455566666555444 233332221111111 112234566777666554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.21  E-value=0.012  Score=49.85  Aligned_cols=166  Identities=13%  Similarity=0.053  Sum_probs=100.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-----------eEEEEcCCCC----C--h-hHHHh---c--CceecCCHH
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D--P-QLEKE---T--GAKFEEDLD   87 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-----------~V~~~d~~~~----~--~-~~~~~---~--g~~~~~~l~   87 (221)
                      +..|...||.|+|.|..|-.+|+.+...+.           +++.+|+...    .  . ...+.   +  .-....+|.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~   99 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE   99 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence            456889999999999999999999877654           5888887631    1  0 10011   0  111235899


Q ss_pred             hhcC--CCCEEEEeCCCChhhhhcchHHHHhcCC---CCCEEEEcCCCCccCHHHHHHHHHh--CC-ceEEEeeCCCCCC
Q 027577           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--GH-IAGYSGDVWNPQP  159 (221)
Q Consensus        88 ell~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk---~ga~lIn~srg~~vd~~al~~al~~--g~-i~~a~lDV~~~ep  159 (221)
                      |+++  +.|+++=...    ..++|.++.++.|.   +..+|.=.|.-..-.|..=.++.+-  |+ |.+.+.-.+.++-
T Consensus       100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~  175 (254)
T cd00762         100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL  175 (254)
T ss_pred             HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence            9999  8998875432    24789999999998   8899999988766333333333333  43 3322222111111


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID-------LRYAAGVKDMLDRYFK  200 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~-------~~~~~~~~~~~~~~~~  200 (221)
                      .......-+..|+++-|=++-....       ..|.....+.|..+..
T Consensus       176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~  223 (254)
T cd00762         176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT  223 (254)
T ss_pred             CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC
Confidence            1111122356799999988643332       3444445555655554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.21  E-value=0.0039  Score=56.74  Aligned_cols=112  Identities=21%  Similarity=0.296  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~----~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++.+|++.|+|.|.+|.++|+.|...|++|.++|+.... .    +.....++..  ....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            467999999999999999999999999999999986421 1    1122334432  12334556789999987643332


Q ss_pred             hhhcc-----------hHHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          106 TRGMF-----------DKDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       106 t~~~i-----------~~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ...+.           ..+.+.. .+...+-|.-+.|+--..+-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            22111           0111222 232234455567887777777777765

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.21  E-value=0.0032  Score=55.66  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||- .++.++++..+..+|++|.++.|... . .+..       +..|  +....+++++++++|+|..-
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~  229 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD  229 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            588999999995 78999999999999999999987532 1 1211       1224  45568999999999999883

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.20  E-value=0.0041  Score=56.53  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCC-CCEEEEeC--C-C
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--P-L  102 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~-aDvVv~~~--p-~  102 (221)
                      ++.|+++.|+|.|.+|.++|+.|.+.|++|.++|+.....    +.....|+...  ....+++.. +|+|+...  | .
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            4679999999999999999999999999999999754221    22334465432  233444554 89888765  2 1


Q ss_pred             Chhh-------hhcchH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          103 TEKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       103 ~~~t-------~~~i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      .+..       ..++.+ +.+..+ +...+-|--+.|+--...-+...|+.
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            2211       112222 222233 33345566667887777777777765

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.19  E-value=0.001  Score=61.28  Aligned_cols=114  Identities=17%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCCCCEEEEeC--C-CChhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT  106 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVv~~~--p-~~~~t  106 (221)
                      .+.+++|.|+|+|..|+++|+.|...|++|.++|+...... .....|+....  ...+.+.++|+||..-  | ..|..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            57899999999999999999999999999999997543222 23445765432  2234567899888763  2 22221


Q ss_pred             h-------hcchHHHHh-c------C-CC-CCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          107 R-------GMFDKDRIA-K------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       107 ~-------~~i~~~~~~-~------m-k~-ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      .       .++.+-.+. .      + .+ ..+-|--+.|+--...-|.+.|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1       112221221 1      1 12 23445556787777777777777533

>PLN02527 aspartate carbamoyltransferase

Probab=97.19  E-value=0.0049  Score=53.72  Aligned_cols=68  Identities=22%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEccC---HHHHHHHHHHccC-CCeEEEEcCCCC--ChhH---HHhcCc--eecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM--DPQL---EKETGA--KFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~G---~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~---~~~~g~--~~~~~l~ell~~aDvVv~~~  100 (221)
                      ++.|.||++||-+   ++.++++..+..+ |++|.+..|...  +.+.   +++.|.  ...+++++.++++|+|....
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence            4889999999965   6899999998887 999998887542  1122   222343  44679999999999998843

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.18  E-value=0.0016  Score=59.30  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccC----------CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~----------G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~  103 (221)
                      .+|||+|+|.||+.+++.+...          +.+| .+++++..........+.....++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4799999999999998887432          3454 35576543222111112334578999985  579999998743


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCCccC-HHHHHHHHHhCCce
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMD-TQAVVDACSSGHIA  148 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd-~~al~~al~~g~i~  148 (221)
                      ....    .-....|+.|..+|....+.... -+.|.++.++.+..
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            2111    12335567888888654432222 35677777776654

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.17  E-value=0.0023  Score=55.84  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEE
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~   98 (221)
                      .+.|.+|++||=   +++.++++..+..+|+ ++.+..|....++......+...++++++++.+|+|..
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            478999999996   6999999999999999 89998875432221111235566899999999999987

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.16  E-value=0.0024  Score=56.18  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|+||++||-+  ++.++++..+..+|++|.+..|..... +        .++..|  +...++++++++++|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999986  799999999999999999988754221 1        122234  34567999999999999885


Q ss_pred             C
Q 027577          100 T  100 (221)
Q Consensus       100 ~  100 (221)
                      +
T Consensus       232 ~  232 (331)
T PRK02102        232 V  232 (331)
T ss_pred             C
Confidence            3

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.15  E-value=0.0016  Score=58.17  Aligned_cols=89  Identities=24%  Similarity=0.415  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccC----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      |.||||||.|+-          .-...+++.|+..|.+|.+|||...........++...++++++++.||++++++. .
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence            899999999964          35677899999999999999985422211111136778999999999999999986 2


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEE
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      ++.+.+ +-+.+ .|| +..+++
T Consensus       387 ~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         387 DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhcc-Chhhh-hcc-CCEEEe
Confidence            333332 32333 455 456665

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=97.15  E-value=0.0024  Score=56.30  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~-------~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|+||++||-+  ++.++++..+..+|++|.+..|... .. +.       ++..|  +....+++++++++|+|..-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            4889999999964  8999999999999999999887532 11 11       12334  45568999999999999885

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=97.15  E-value=0.0035  Score=52.96  Aligned_cols=89  Identities=18%  Similarity=0.340  Sum_probs=57.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      --++-|+|.|.+++++++.++..|++|.++|.++.   .+.          +..+..++.+....|          .+.+
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~----------~~~~~~~~~~~~~~~----------~~~~  156 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFP----------EDLPDGVATLVTDEP----------EAEV  156 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---ccc----------ccCCCCceEEecCCH----------HHHH
Confidence            35899999999999999999999999999997542   110          011123333322222          1122


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                      ..+.+++.+|-++++.-.|.+.|..+|.+...
T Consensus       157 ~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       157 AEAPPGSYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            23456777777778888888888888844333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.13  E-value=0.0022  Score=55.98  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCCCCEEEEeCCCChhhhhcchHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.++++.+.+.++++|+..+-+..+ .-+..|+++.+... ..    .-..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~-~~----~~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPA-GG----LVPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCc-HH----HHHH
Confidence            488999999999999999999999999999988776777888888764322211 12346877776652 11    2345


Q ss_pred             HHhcCCCCCEEEEcCC
Q 027577          114 RIAKMKKGVLIVNNAR  129 (221)
Q Consensus       114 ~~~~mk~ga~lIn~sr  129 (221)
                      .++.++++..++.++-
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6788999999988764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.13  E-value=0.00052  Score=50.94  Aligned_cols=100  Identities=23%  Similarity=0.361  Sum_probs=59.9

Q ss_pred             ccCHHHHHHHHHHccC----CCeEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcchHH
Q 027577           43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        43 G~G~iG~~iA~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      |+|.||+.+++.+...    +++|. +++++  ..........+.....++++++.  ..|+|+=|++. +..    .+-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~----~~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAV----AEY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHH----HHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHH----HHH
Confidence            8999999999999765    56754 55665  11111111223345678999998  89999999663 222    223


Q ss_pred             HHhcCCCCCEEEEcCCCCccC---HHHHHHHHHhCCc
Q 027577          114 RIAKMKKGVLIVNNARGAIMD---TQAVVDACSSGHI  147 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~vd---~~al~~al~~g~i  147 (221)
                      ....|+.|.-+|..+.+.+.|   -+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            445577899999999888872   3345455554443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.12  E-value=0.0036  Score=55.21  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|+||++||-+  ++.++++..+..+|++|.+..|... ..+        .++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999975  6899999999999999999987532 111        122234  44568999999999999874


Q ss_pred             C----CCC-h---h-----hhhcchHHHHhcC-CCCCEEEEcC
Q 027577          100 T----PLT-E---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (221)
Q Consensus       100 ~----p~~-~---~-----t~~~i~~~~~~~m-k~ga~lIn~s  128 (221)
                      .    ... +   +     ....++.+.++.. |++++|+.+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    100 0   0     0122566667765 6777777664

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.12  E-value=0.0017  Score=60.70  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=47.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCce--ecCCHHhhc-CCCCEEEEeCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAK--FEEDLDTML-PKCDIVVVNTP  101 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~--~~~~l~ell-~~aDvVv~~~p  101 (221)
                      ..+.++++.|+|.|.+|++++..|...|++|++++|+....+. +...+..  ...++.+.. ..+|+|+.++|
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~  448 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTS  448 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEeccc
Confidence            3578999999999999999999999999999999986432222 2222211  112222222 34677777776

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.10  E-value=0.0007  Score=60.51  Aligned_cols=84  Identities=21%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             EEEEccCHHHHHHHHHHccCC-C-eEEEEcCCCCChhHHHh----cCcee-------cCCHHhhcCCCCEEEEeCCCChh
Q 027577           39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE----TGAKF-------EEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~----~g~~~-------~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      |+|+|.|.+|+.+++.|...+ . +|++.||+....+...+    ..+..       ..+++++++++|+|+.|+|..  
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence            789999999999999998765 4 89999997644332221    12211       123678899999999999832  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEc
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      ...-+   .-..++.|...||+
T Consensus        79 ~~~~v---~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   79 FGEPV---ARACIEAGVHYVDT   97 (386)
T ss_dssp             GHHHH---HHHHHHHT-EEEES
T ss_pred             hhHHH---HHHHHHhCCCeecc
Confidence            11111   22234557777774

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.07  E-value=0.00066  Score=52.42  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------c--CceecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------T--GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~--g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      +||+|||. |.+|..+|..|...+  -++..+|+.....+ .+.+       .  .........+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            58999999 999999999986555  47999998642111 1111       1  11222355677899999999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.07  E-value=0.0026  Score=54.57  Aligned_cols=64  Identities=19%  Similarity=0.181  Sum_probs=45.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHH-HhcCceecCCHHhh-cCCCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLE-KETGAKFEEDLDTM-LPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~-~~~g~~~~~~l~el-l~~aDvVv~~~p~  102 (221)
                      ++++.|+|.|..+++++..|...|+. |.+++|+..+.+.. +..+....   +++ ...+|+||.|+|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCcc
Confidence            57899999999999999999999984 99999976433322 22332211   111 2458999999983

>PRK05086 malate dehydrogenase; Provisional

Probab=97.07  E-value=0.0049  Score=53.87  Aligned_cols=66  Identities=27%  Similarity=0.349  Sum_probs=44.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHc---cCCCeEEEEcCCCCC----hhHHH-h--cCcee--cCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMD----PQLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~----~~~~~-~--~g~~~--~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||. |.+|..++..+.   ..+.++..+|+++..    .+... .  ..+..  .+++.+.++++|+|++|.-.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            68999999 999999998773   345678999976432    12111 1  11111  24656788999999998753

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.06  E-value=0.00069  Score=57.16  Aligned_cols=93  Identities=20%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhc--Cc--ee-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--GA--KF-   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g~--~~-   82 (221)
                      ..|..++|+|||+|.+|..+++.|...|. ++.++|......                   +    ...+.  .+  .. 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999997 577777542110                   0    00111  11  11 


Q ss_pred             ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                         .  .+.+++++++|+|+.|+ .+.+++..+++...+.   +..+|..+
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~---~ip~v~~~  154 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA---KKPLVSGA  154 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh---CCEEEEee
Confidence               1  12356778899888887 4666666666554443   44566643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.04  E-value=0.0046  Score=55.90  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+.|++|+|+|+          .+-+..+++.|...|.+|.+||+...... ...  .....++++.++.+|+|+++++.
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence            588999999996          34678899999999999999998643222 222  22246888999999999999973


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEc
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      . +.+.+-.+.....|+ ..+++|.
T Consensus       387 ~-~~~~~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 D-EFKDLDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             H-HHhccCHHHHHHhcC-CCEEEeC
Confidence            3 333322233333454 4578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.00097  Score=56.10  Aligned_cols=103  Identities=18%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +++|+||.|+|..++++.+.+.|.    +++.+-++...... ++..|+..+.+-.+.++.+|++++++.  |.....+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence            479999999999999999988875    47777664434444 667788766555888899999999986  33332232


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      .+.-.....+.+++.+.-|..++  .|...|.
T Consensus        79 s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~  108 (267)
T KOG3124|consen   79 SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS  108 (267)
T ss_pred             hcCccccccceEEEEEeecccHH--HHHHhcC
Confidence            22222245678999998886543  3444443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.03  E-value=0.0015  Score=54.39  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhc----Cceec
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET----GAKFE   83 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~----g~~~~   83 (221)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|......                   +    ...+.    .+...
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 577777542110                   0    00011    11111


Q ss_pred             ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                            .+++++++++|+|+.|+. +..++..+++...+   .+..+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                  234567888999988875 66677666655443   345666664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.03  E-value=0.006  Score=50.50  Aligned_cols=93  Identities=26%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh-----cCCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM-----LPKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el-----l~~aDvVv~~~p~~  103 (221)
                      ..|.+|.|.|.|.+|+.+++.++..|.+|++.++++...+.++..+....     .+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            45889999999999999999999999999999886544444444443211     111111     24578888777621


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                           ......+..|+++..+++.+...
T Consensus       213 -----~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 -----ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             -----HHHHHHHHhcccCCEEEEEccCC
Confidence                 12344566778888888876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=97.02  E-value=0.0031  Score=55.63  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||-+  ++.++++..+..+|+++.+..|... ..+        .++..|  +...++++++++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4889999999975  6899999999999999999887542 111        122234  45568999999999999875

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=97.00  E-value=0.0023  Score=54.45  Aligned_cols=101  Identities=28%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             cccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHH-HhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE-KETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .|.+|+..+++|+|+ |.||..+|+-|...+......-|.....     ... .+.+-....+++..+.+.|+++.....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            467899999999995 9999999999999888766655432111     111 123333344666666666666554431


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                        .+-..|+.+.   +|||+.++|-++-.=+|+
T Consensus       241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             --CCCceechhh---ccCCeEEEcCCcCccccc
Confidence              2334566654   689999999888664544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.99  E-value=0.0012  Score=52.18  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             EEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCCCh
Q 027577           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        39 vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      |.|+|. |.+|+.+++.|...|++|.++.|++.+.+.  ..+++.       ..++.+.++.+|+|+.+++...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            679995 999999999999999999999997644332  233321       1244677889999999987433

...

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.99  E-value=0.0029  Score=58.14  Aligned_cols=114  Identities=17%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-----hhHHHhcCceecC-CHHhhcCCCCEEEEeCC---
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-----PQLEKETGAKFEE-DLDTMLPKCDIVVVNTP---  101 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-----~~~~~~~g~~~~~-~l~ell~~aDvVv~~~p---  101 (221)
                      +..+.+++|.|||.|.+|.++|+.|+..|++|.++|.....     .+.+++.|+.... +-.+....+|+|+++..   
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence            44678999999999999999999999999999999965421     1224455765431 11123456999998763   


Q ss_pred             CChhh-----hh--cchH-HHH-hcCCC----CCEEEEcCCCCccCHHHHHHHHHh
Q 027577          102 LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       102 ~~~~t-----~~--~i~~-~~~-~~mk~----ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      .++..     .+  ++.+ +.+ ..+.+    ..+-|--+.|+--...-+...|+.
T Consensus        91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            33321     11  1222 222 23322    235566667877666666677765

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.98  E-value=0.0069  Score=55.06  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccC-CCeEEEEcCCCC-C-hhH---HHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~-~~~---~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|+||++||-   +++.++++..+..+ |++|.+..|... . .+.   +++.|  +..+++++++++++|+|....
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~  316 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR  316 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            388999999997   59999999998876 999999887542 1 221   22224  445689999999999998844

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.98  E-value=0.011  Score=54.25  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcc----CHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        34 l~g~~vgIIG~----G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      ++-++|+|||.    |++|..+.+.++..|+  +|+.+++...     .-.|+..+.+++++-...|++++++| .+.+.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~   78 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVP-AKYVP   78 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecC-HHHHH
Confidence            56789999998    8899999999999887  6888887542     13467777889998888999999999 22333


Q ss_pred             hcchHHHHhcCCCCCE-EEEcCCCCc-----cCHHHHHHHHHhCCceEE
Q 027577          108 GMFDKDRIAKMKKGVL-IVNNARGAI-----MDTQAVVDACSSGHIAGY  150 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~-lIn~srg~~-----vd~~al~~al~~g~i~~a  150 (221)
                      .++. +..+ .+-..+ ++.-+-++.     ..++++.+..+++.+.-.
T Consensus        79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            3333 2332 333334 443333332     235678888888777733

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.97  E-value=0.0024  Score=58.54  Aligned_cols=113  Identities=18%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             CCCCEEEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCCCCEEEEeCCC---Chhhh
Q 027577           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTPL---TEKTR  107 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~---~~~t~  107 (221)
                      .++++|.|+|+|..|.+ +|+.|+..|++|.++|..... .+.+++.|+... ....+.+..+|+|+..-.-   +|...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 799999999999999975432 122344566543 1223556789988876422   22211


Q ss_pred             -------hcchH-HHHhcC-CC-CCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          108 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       108 -------~~i~~-~~~~~m-k~-ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                             .++.+ +.+..+ ++ ..+-|.-+.|+--...-+.+.|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   22332 333333 32 34556667888877777777787654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.97  E-value=0.0026  Score=58.85  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCCCCEEEEe--CCCC-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT-  103 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~ell~~aDvVv~~--~p~~-  103 (221)
                      ++.+++|.|+|+|..|.++|+.|+..|++|.++|......  +.+...  |+...  ....+.+..+|+|+..  +|.+ 
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~   83 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE   83 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence            3568999999999999999999999999999999754221  223333  33321  1234556789999886  3322 


Q ss_pred             ----hhh-------hhcc-hHHHH-hcC--------CCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          104 ----EKT-------RGMF-DKDRI-AKM--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       104 ----~~t-------~~~i-~~~~~-~~m--------k~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                          |..       ..++ ..+.+ ..+        ++..+-|--+.|+--...-|...|++....
T Consensus        84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence                211       1122 11221 112        122445555677776666677777654433

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.96  E-value=0.0031  Score=60.14  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHh----hcCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t~  107 (221)
                      ..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+.+++.|...+    ++.+-    -++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            468999999999999999999999999999987766666666665422    23221    2468999999998655554


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+.  ...+.+.|+..++--+
T Consensus       480 ~i~--~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIARA  498 (621)
T ss_pred             HHH--HHHHHhCCCCeEEEEE
Confidence            432  2334445665555433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.95  E-value=0.0052  Score=55.86  Aligned_cols=91  Identities=18%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--Cceec----CCHH----hhcCCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLD----TMLPKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~----ell~~aDvVv~~~p~~  103 (221)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|.++...+...+.  ++..+    .+.+    .-++++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            557899999999999999999999999999999876443333332  33211    1222    2346899999888854


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEE
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      ..+  ++.......+.+..+++-
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~  329 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIAL  329 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEE
Confidence            433  222233344444444443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.91  E-value=0.012  Score=50.86  Aligned_cols=111  Identities=14%  Similarity=0.184  Sum_probs=77.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh--------
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~--------  107 (221)
                      |++++|||-=.--..+++.|...|++|..+.-...... +  .|+......++.++++|+|++-+|.+.+..        
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~   77 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN   77 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence            68999999999999999999999999888764221111 1  155566666777999999999999655421        


Q ss_pred             --hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577          108 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus       108 --~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                        -.++++.++.+++++++ -++    ++..++.++.++..+.  ..|.++
T Consensus        78 ~~~~l~~~~l~~~~~~~~~-~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        78 EKVVLTPELLESTKGHCTI-YVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             CCccccHHHHHhcCCCCEE-EEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence              12467889999976653 333    3455666677777777  554443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.89  E-value=0.01  Score=51.78  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=44.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCC--CCh-----hHHH---hcC----ceecCCHHhhcCCCCEEEEe
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDP-----QLEK---ETG----AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~--~~~-----~~~~---~~g----~~~~~~l~ell~~aDvVv~~   99 (221)
                      ++|+|+|. |.+|..++..+...|.  +|.++|+..  ...     +..+   ..+    +....+.+ .+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            58999997 9999999999988776  499999843  111     1111   111    12223544 58999999999


Q ss_pred             CC
Q 027577          100 TP  101 (221)
Q Consensus       100 ~p  101 (221)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.87  E-value=0.0022  Score=57.18  Aligned_cols=64  Identities=20%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCc-eecC---CHHhhcCCCCEEEEe
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEE---DLDTMLPKCDIVVVN   99 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~---~l~ell~~aDvVv~~   99 (221)
                      .++|||||.|..|+.++..++.+|++|+++|+.+..+... ...-+ ..+.   .+.++++.+|+|...
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e   70 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE   70 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence            3789999999999999999999999999999865433211 11001 0112   355677889988653

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.87  E-value=0.0046  Score=53.80  Aligned_cols=90  Identities=18%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C----CH---HhhcC--CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~ell~--~aDvVv~~~p~~  103 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.+++....+.++++|+..+ +    +.   .++..  ..|+|+-++.. 
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~-  241 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN-  241 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC-
Confidence            489999999999999999999999999 9998887655566666675321 1    11   12222  47888877652 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.    .....+..++++..++.++.
T Consensus       242 ~~----~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         242 TA----ARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             HH----HHHHHHHHhhcCCEEEEEcC
Confidence            11    12344667788888887764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.85  E-value=0.0031  Score=55.73  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC---------------------hh----HHHhcC--c--e
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKETG--A--K   81 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~g--~--~   81 (221)
                      ..|..++|.|||+|.+|..+|+.|...|. ++.++|.....                     .+    ..++.+  +  .
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999998 78899875311                     00    111111  1  1


Q ss_pred             e------cCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        82 ~------~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                      .      ..+..++++++|+|+.|+- +.+++.++++...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688        100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            1      1234567888898887764 56666666655443

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=96.85  E-value=0.019  Score=53.43  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCC-CeEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCCCCE
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDv   95 (221)
                      .+.|++|++||-   +++.++++..+..+| ++|.+..|...  +.+   .+++.|  +....+++++++++|+
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~  244 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV  244 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence            588999999996   699999999999998 99998887542  222   222334  4456899999999995

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.84  E-value=0.014  Score=51.18  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC-------hhHHHhc-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD-------PQLEKET-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~-------~~~~~~~-----g~~~~~~l~ell~~aDvV   96 (221)
                      +||+|||. |.+|..+|..+...|.       ++..+|.....       .+.....     .+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999998876655       79999984321       1111110     122223456788999999


Q ss_pred             EEeCCCCh---hhhh-cc--hH-------HHHhcCC-CCCEEEEcCCCCccCHHH
Q 027577           97 VVNTPLTE---KTRG-MF--DK-------DRIAKMK-KGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        97 v~~~p~~~---~t~~-~i--~~-------~~~~~mk-~ga~lIn~srg~~vd~~a  137 (221)
                      +++.-...   .++. ++  +.       ..+.... +++++|.++  .++|.-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA  135 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence            99864311   1111 11  11       1222334 588999886  5555444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.83  E-value=0.011  Score=52.27  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-------~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||-+  ++.++++..+..+|++|.+..|... . .+.       ++..|  +...++++++++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  7999999999999999999887542 1 111       12234  44568999999999999875


Q ss_pred             CC----C-Ch---h-----hhhcchHHHHhcC-CCCCEEEEcC
Q 027577          100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (221)
Q Consensus       100 ~p----~-~~---~-----t~~~i~~~~~~~m-k~ga~lIn~s  128 (221)
                      .=    . .+   +     ...-++.+.++.. +++++|+.+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            41    0 00   0     0122455666654 5667666653

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.82  E-value=0.0032  Score=54.62  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=47.3

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p  101 (221)
                      |+|.|.| .|.+|+.+++.|...|++|.+.+|+..........+++.       ..++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            5899999 599999999999999999999998653322222234332       1345677899999987654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.78  E-value=0.0043  Score=52.21  Aligned_cols=84  Identities=23%  Similarity=0.204  Sum_probs=56.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----cee-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKF-   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~-   82 (221)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++.++|......                   +    ...+.+    +.. 
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            36899999999999999999999999997 477777643211                   0    001111    111 


Q ss_pred             ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                         .  .+.+++++++|+|+.|+ .+.+++..+++...+
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~  137 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFA  137 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHH
Confidence               1  23456788899888777 466777777665544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.76  E-value=0.0056  Score=53.74  Aligned_cols=69  Identities=25%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCC--CeEEEEcCCCCCh---hHHH---hcCceecCC---HHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDP---QLEK---ETGAKFEED---LDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~---~~~~---~~g~~~~~~---l~ell~~aDvVv~~~  100 (221)
                      -++.+||+|||. |++|..+|..+...+  .++..+|......   +...   ...+....+   ..+.++.||+|+++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            466779999999 999999999998444  5799999832221   1111   111222222   257899999999886


Q ss_pred             C
Q 027577          101 P  101 (221)
Q Consensus       101 p  101 (221)
                      -
T Consensus        85 G   85 (321)
T PTZ00325         85 G   85 (321)
T ss_pred             C
Confidence            5

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.76  E-value=0.013  Score=51.22  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|+||++||- +++.++++..+..+|++|.+..|.....+       .++..| +....+++++++.+|+|..-+
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~  226 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT  226 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence            488999999996 79999999999999999999988542211       112223 455679999999999998843

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.76  E-value=0.0055  Score=54.26  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCC---eEEEEc--CCCCChhHHHhcCceec-CCHHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHD--RVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d--~~~~~~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.++.  ++............... .+. +.++++|+|++++|.. ...
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~~-~s~   83 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGGS-ISK   83 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCcH-HHH
Confidence            467899999 69999999999987554   343332  22111111111111111 122 4458899999999933 222


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+. .+   ..+.|+.+||.|
T Consensus        84 ~~~-~~---~~~~g~~VIDlS  100 (344)
T PLN02383         84 KFG-PI---AVDKGAVVVDNS  100 (344)
T ss_pred             HHH-HH---HHhCCCEEEECC
Confidence            221 11   235689999988

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.76  E-value=0.0027  Score=45.62  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             CCEEEEEccCHHHHHHHHHH-ccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRL-KPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l-~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p  101 (221)
                      ..++.|+|+|+.|++++... ...|+. +.++|.++.... ..-.|+..+.+++++.+.  .|+-++++|
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~~~~~i~iaii~VP   71 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELEEFIEIDIAIITVP   71 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence            45799999999999997544 455665 455666553322 112256555567666655  999999999

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.75  E-value=0.0049  Score=54.10  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC--------CHHhhcC------CCC----EE
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--------DLDTMLP------KCD----IV   96 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--------~l~ell~------~aD----vV   96 (221)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.++++...+.++++|+..+-        ++.+.+.      ..|    +|
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v  245 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI  245 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence            48899999999999999999999999999998876566666666653211        1111111      133    56


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +-++.. +.    .....++.++++..++.++.
T Consensus       246 ~d~~g~-~~----~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       246 FECSGS-KP----GQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             EECCCC-hH----HHHHHHHHHhcCCeEEEECc
Confidence            666542 21    11234667788888888764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.74  E-value=0.0032  Score=51.34  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=33.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~   69 (221)
                      ..|.+++|.|+|+|.+|..+++.|...|.. +.++|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            468999999999999999999999999985 88888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.73  E-value=0.0098  Score=52.32  Aligned_cols=111  Identities=19%  Similarity=0.254  Sum_probs=66.4

Q ss_pred             CEEEEEccCHHHHHHHHHHcc--------CCCeEE-EEcCCCC---C----hhHH---HhcC-c--eecC--CHHhhc-C
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM---D----PQLE---KETG-A--KFEE--DLDTML-P   91 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~--------~G~~V~-~~d~~~~---~----~~~~---~~~g-~--~~~~--~l~ell-~   91 (221)
                      ++|+|+|+|++|+.+++.+..        .+.+|. +.|++..   +    .+..   .+.+ +  ....  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            479999999999999999865        456654 4455421   0    1111   0101 1  1112  455554 4


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      ++|+|+=|+|.+..-... -.-....|+.|..+|-.+.|.+. .-+.|.+..++++..
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            689999999743211111 12234557889999999888775 456666766666554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.72  E-value=0.0077  Score=50.12  Aligned_cols=89  Identities=12%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhcCceec---CCHHhhcCCCCEEEEeCCCChh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE---EDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~---~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..++|++|.|||.|.+|..=++.|..+|.+|.++.+... .+.   .....+...   .+ ++.+..+++|+.++. +++
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~-~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATd-D~~   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS-KEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATD-DEK   97 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCC-CHH
Confidence            467899999999999999989999999999999998542 221   111122211   12 234678899988876 222


Q ss_pred             hhhcchHHHHhcCCCCCEEEEc
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                          ++.......+.-.+++|+
T Consensus        98 ----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         98 ----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             ----HHHHHHHHHHHcCCeEEE
Confidence                344444444443444553

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.72  E-value=0.0067  Score=55.74  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhc-Cceec--CCHHhhcCCCCEEEEeCCCChhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~-g~~~~--~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .+|+|++|.|||.|.+|..=++.|..+|++|.++.+... .+.  .... .+...  .-.++.++.+++|+.++...+  
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~-~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--   84 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFI-PQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--   84 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence            479999999999999999989999999999999987532 221  1111 22211  112355788999888876433  


Q ss_pred             hhcchHHHHhcCCCCCEEEEcC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                         ++.+.....+...+++|++
T Consensus        85 ---~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 ---VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             ---HhHHHHHHHHHcCcEEEEC
Confidence               3333333344444555553

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.71  E-value=0.0089  Score=52.06  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCC------HHhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED------LDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~------l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .|.++.|.|.|.+|..+++.++.+|.+|++.+++....+.+.+.|+..+-+      .++.-...|+++-+++..     
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~-----  243 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS-----  243 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence            478999999999999999999999999999988765555555566532111      112234578888777622     


Q ss_pred             cchHHHHhcCCCCCEEEEcCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....+.+..++++..+++++.
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         244 HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             chHHHHHHHhcCCCEEEEEec
Confidence            123445677777778877754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.70  E-value=0.0074  Score=53.47  Aligned_cols=90  Identities=23%  Similarity=0.282  Sum_probs=64.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDvVv~~~p  101 (221)
                      .+.+|.|+|.|.||...+..++.+|. +|++.|+++.+.+.+++ .+.....+. +        ++-  ..+|+++-|+.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            34499999999999999999999996 58888998877777777 454432221 1        222  24999999987


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ++.    .-.+.+..++++..++.++=
T Consensus       248 -~~~----~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         248 -SPP----ALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             -CHH----HHHHHHHHhcCCCEEEEEec
Confidence             222    22456777888888888774

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.70  E-value=0.0064  Score=52.55  Aligned_cols=87  Identities=13%  Similarity=0.011  Sum_probs=56.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      .|+++.|+|.|.+|...++.++.+|++ |++.+++....+.+....+  ++.-++.-...|+|+-++.. +.    .-..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~-~~----~~~~  216 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGD-PS----LIDT  216 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCC-HH----HHHH
Confidence            578899999999999999999999997 5566664433333322211  21111112357988888762 11    1234


Q ss_pred             HHhcCCCCCEEEEcC
Q 027577          114 RIAKMKKGVLIVNNA  128 (221)
Q Consensus       114 ~~~~mk~ga~lIn~s  128 (221)
                      .++.++++..++.++
T Consensus       217 ~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       217 LVRRLAKGGEIVLAG  231 (308)
T ss_pred             HHHhhhcCcEEEEEe
Confidence            677888888888775

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.69  E-value=0.0059  Score=55.40  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=52.3

Q ss_pred             ccCCCCCEEEEEcc----------CHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEe
Q 027577           31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        31 ~~~l~g~~vgIIG~----------G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~   99 (221)
                      +.++.|++|+|+|+          .+-+..+++.|...| .+|.+||+.-..........+. ..++++.++.||+|+++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~  393 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML  393 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence            34688999999996          346778999999986 9999999863221111011222 36889999999999999


Q ss_pred             CCC
Q 027577          100 TPL  102 (221)
Q Consensus       100 ~p~  102 (221)
                      ++.
T Consensus       394 t~~  396 (415)
T PRK11064        394 VDH  396 (415)
T ss_pred             CCC
Confidence            983

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.69  E-value=0.012  Score=51.15  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             EEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhH-HHhc----------CceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET----------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~-~~~~----------g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      |+|||.|.+|..+|..+...|  .++.++|++....+. ..++          .+....+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998877  479999986532211 1110          0111233 4578999999999763211


Q ss_pred             ---h--------hhcch--HHHHhcCCCCCEEEEcC
Q 027577          106 ---T--------RGMFD--KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 ---t--------~~~i~--~~~~~~mk~ga~lIn~s  128 (221)
                         +        ..++.  ...+....|++++|+++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence               1        11111  11233345789999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.67  E-value=0.013  Score=51.84  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.+... .+.++++|+..+   .   .+.+.....|+|+-++.. +.+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence            5889999999999999999999999998887765433 234456676422   1   122333457988877652 111 


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        + .+.++.++++..++.++.
T Consensus       261 --~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 --L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             --H-HHHHHHhcCCcEEEEeCC
Confidence              2 335677889998888864

>PRK05442 malate dehydrogenase; Provisional

Probab=96.66  E-value=0.027  Score=49.56  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC-------hhHHHhc-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD-------PQLEKET-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~-------~~~~~~~-----g~~~~~~l~ell~~aDvV   96 (221)
                      +||+|||. |.+|..+|..|...|.       ++..+|..+..       .+.....     .+....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998765443       78999974321       1111110     122234556788999999


Q ss_pred             EEeCCC--Ch-hhhh-cc--h----HH---HHhc-CCCCCEEEEcCCCCccCHHH
Q 027577           97 VVNTPL--TE-KTRG-MF--D----KD---RIAK-MKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        97 v~~~p~--~~-~t~~-~i--~----~~---~~~~-mk~ga~lIn~srg~~vd~~a  137 (221)
                      +++.-.  .+ +++. ++  +    ++   .+.. -++.+++|.++  .++|.-.
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            998642  11 1111 11  1    11   1222 33688999987  5555444

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.66  E-value=0.0087  Score=49.40  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (221)
                      ..|..++|+|||+|.+|..+|+.|...|.. +.++|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999999985 8888875

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.65  E-value=0.014  Score=51.26  Aligned_cols=65  Identities=22%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC---hhHHHh----c-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKE----T-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~---~~~~~~----~-----g~~~~~~l~ell~~aDvV   96 (221)
                      .||+|||. |.+|..+|..|...|.       ++..+|.....   ...+.+    .     ++....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999876664       79999985311   111111    0     112223456788999999


Q ss_pred             EEeCC
Q 027577           97 VVNTP  101 (221)
Q Consensus        97 v~~~p  101 (221)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.65  E-value=0.01  Score=53.03  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+++... .+.++++|+..+   .+   +.+.....|+|+-++.. +.  
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~-~~--  254 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA-EH--  254 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc-HH--
Confidence            5899999999999999999999999999888765432 345556666422   11   12223347888877652 11  


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                        .-...++.++++..++.++
T Consensus       255 --~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        255 --ALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             --HHHHHHHhhcCCCEEEEEc
Confidence              1133456677888887775

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.64  E-value=0.0042  Score=47.72  Aligned_cols=85  Identities=15%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (221)
                      +-|+|.|.+++++++.++..|++|.++|+++..                  +..++-+ .+.+    .....  +.+ .+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------------~~~~~~~-~~~~----~~~~~--~~~-~~   54 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------------FPEADEV-ICIP----PDDIL--EDL-EI   54 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEE-ECSH----HHHHH--HHC--S
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------------cCCCCcc-EecC----hHHHH--hcc-CC
Confidence            468999999999999999999999999986321                  1133332 2222    01111  111 35


Q ss_pred             CCCCEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 027577          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (221)
Q Consensus       119 k~ga~lIn~srg~~vd~~al~~al~~g~i~~a~  151 (221)
                      .+++.+| ++++.-.|.+.|..+|+. .....+
T Consensus        55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            5666665 788888888888888776 344333

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.62  E-value=0.014  Score=51.07  Aligned_cols=92  Identities=28%  Similarity=0.319  Sum_probs=57.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh----hHHHhc---Cceec---CCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP----QLEKET---GAKFE---EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~----~~~~~~---g~~~~---~~l~ell~~aDvVv~~~p~~  103 (221)
                      +||+|||. |++|..+|..+...|.  ++..+|.. ...    +.....   .+...   +++.+.+++||+|+++....
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            58999999 9999999999987774  69999976 221    111110   12211   23457789999999986431


Q ss_pred             --h-hhhh-cc--hH-------HHHhcCCCCCEEEEcCC
Q 027577          104 --E-KTRG-MF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 --~-~t~~-~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                        | +++- ++  +.       +.+....|++++|+++-
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN  118 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN  118 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence              2 1111 11  11       12333468999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.62  E-value=0.018  Score=51.28  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             CCCCCEEEEEccC--------HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCCC
Q 027577           33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC   93 (221)
Q Consensus        33 ~l~g~~vgIIG~G--------~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~ell~~a   93 (221)
                      .|.|+||+|+|.|        ++.++++..+..+|++|.+..|...  ..+.       +++.|.  ...++++++++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999743        5668888899999999999987632  2222       123343  3568999999999


Q ss_pred             CEEEEeC
Q 027577           94 DIVVVNT  100 (221)
Q Consensus        94 DvVv~~~  100 (221)
                      |+|..-.
T Consensus       247 Dvvyt~~  253 (357)
T TIGR03316       247 DIVYPKS  253 (357)
T ss_pred             CEEEECC
Confidence            9998763

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.62  E-value=0.012  Score=51.52  Aligned_cols=96  Identities=22%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             EEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHh---cCceec---CCHHhhcCCCCEEEEeCCCCh-
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKE---TGAKFE---EDLDTMLPKCDIVVVNTPLTE-  104 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~---~g~~~~---~~l~ell~~aDvVv~~~p~~~-  104 (221)
                      ||+|||. |++|..+|..|...+.  ++..+|..+...   +....   ..+..+   +++.+.+++||+|+++..... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            6899999 9999999998876554  799999865211   11111   012211   134678999999999875321 


Q ss_pred             --h--------hhhcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577          105 --K--------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       105 --~--------t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                        .        +..++.  .+.+..-.|++++|+++-  ++|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence              1        111111  012333468999999864  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.62  E-value=0.0082  Score=52.90  Aligned_cols=88  Identities=22%  Similarity=0.297  Sum_probs=51.8

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhcC--ceecCCHH-hhcCCCCEEEEeCCCChhhhh
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFEEDLD-TMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~~~l~-ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +++|+|+| .|.+|+.+++.|...|+   ++.+..+.....+...-.+  +... +++ ..++.+|+|++|+|.. .+..
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~-d~~~~~~~~vDvVf~A~g~g-~s~~   78 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVE-DLTTFDFSGVDIALFSAGGS-VSKK   78 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEe-eCCHHHHcCCCEEEECCChH-HHHH
Confidence            46899999 69999999999988665   3455543321111111111  1211 222 3347899999999832 2222


Q ss_pred             cchHHHHhcCCCCCEEEEcCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +. .   ..++.|+.+||.|.
T Consensus        79 ~~-~---~~~~~G~~VIDlS~   95 (334)
T PRK14874         79 YA-P---KAAAAGAVVIDNSS   95 (334)
T ss_pred             HH-H---HHHhCCCEEEECCc
Confidence            11 1   12357889998874

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.61  E-value=0.0056  Score=53.11  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=56.9

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-----------hhH--------------HHhc--Cce--ec----
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-----------PQL--------------EKET--GAK--FE----   83 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-----------~~~--------------~~~~--g~~--~~----   83 (221)
                      +|.|||+|.+|..+|+.|...|. ++.++|.....           .+.              .++.  +++  .+    
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            58999999999999999999998 47777643210           000              0111  111  11    


Q ss_pred             -------------------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           84 -------------------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        84 -------------------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                                         +.++++++++|+|+.++ .+.+++.+++.....   .+..+|+.+-
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~---~~k~~I~aal  141 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAA---KNKLVINAAL  141 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHH---hCCcEEEEEe
Confidence                               12568899999999998 577788777654443   2346676543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02602 lactate dehydrogenase

Probab=96.61  E-value=0.0092  Score=52.98  Aligned_cols=91  Identities=18%  Similarity=0.279  Sum_probs=56.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---cC-cee--cCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TG-AKF--EEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g-~~~--~~~l~ell~~aDvVv~~~p~~  103 (221)
                      +||+|||.|.+|..+|..+...|.  ++..+|......+     ....   .+ ...  ..+.++ +++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence            699999999999999998876665  6999998653221     1111   01 121  134444 89999999985431


Q ss_pred             --h-hhh-hcc--hH-------HHHhcCCCCCEEEEcC
Q 027577          104 --E-KTR-GMF--DK-------DRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 --~-~t~-~~i--~~-------~~~~~mk~ga~lIn~s  128 (221)
                        + .++ .++  +.       +.+....+.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence              1 122 111  11       1233456789999987

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.59  E-value=0.008  Score=53.25  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-C----CHHh----hcC-CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DLDT----MLP-KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l~e----ll~-~aDvVv~~~p~~  103 (221)
                      .|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+..+ +    ++.+    +.. ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            48899999999999999999999999 59999887766667777776422 1    1111    111 378888777521


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .    .-...+..++++..++.++-
T Consensus       271 -~----~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 -P----ALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             -H----HHHHHHHHHhcCCEEEEEcc
Confidence             1    12334567788888887763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.57  E-value=0.016  Score=51.16  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHc-cCCCeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|+||++||-   +++..+++..+. -+|++|.+..|..-  +.+.   ++..|  +...++++++++++|+|...
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            589999999996   688999998766 45999999887542  2222   22333  44568999999999999874

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.014  Score=53.16  Aligned_cols=114  Identities=16%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCCCCEEEEeCCCC---
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTPLT---  103 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~ell~~aDvVv~~~p~~---  103 (221)
                      ++.+++|.|+|.|.+|.++|+.|...|++|.++|......  +..++  .|+...  ...+..+.++|+|+...--.   
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~   81 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ   81 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence            3678999999999999999999999999999999755332  12222  255432  11234456899998864322   


Q ss_pred             hhhhh-------cc-hHHHHhc-CC---CCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          104 EKTRG-------MF-DKDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       104 ~~t~~-------~i-~~~~~~~-mk---~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      |....       ++ ..+.+.. ++   ...+-|.-+.|+--...-+...|+...
T Consensus        82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            22111       22 1233323 32   234556666788777777777777533

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.55  E-value=0.024  Score=51.14  Aligned_cols=67  Identities=16%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             CCCCCEEEEEcc-----C---HHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCCC
Q 027577           33 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKC   93 (221)
Q Consensus        33 ~l~g~~vgIIG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~a   93 (221)
                      .+.|+||+|+|.     |   ++.++++..+..+|++|.+..|..-  .++.       +++.|  +...++++++++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   6789999999999999999988632  2221       22234  44568999999999


Q ss_pred             CEEEEe
Q 027577           94 DIVVVN   99 (221)
Q Consensus        94 DvVv~~   99 (221)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999876

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=96.54  E-value=0.0092  Score=51.53  Aligned_cols=92  Identities=24%  Similarity=0.217  Sum_probs=61.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCcee-cC----CHH--h--hcCCCCEEEEeCCCCh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-EE----DLD--T--MLPKCDIVVVNTPLTE  104 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~-~~----~l~--e--ll~~aDvVv~~~p~~~  104 (221)
                      .|.+|.|+|.|.+|+.+++.++..|++ |++.+++....+.+.+.++.. +.    +..  .  .-+..|+++-+++.. 
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~-  237 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP-  237 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence            578999999999999999999999998 888887654444445555421 11    110  0  124578888776521 


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                          ......+..|+++..+++++...
T Consensus       238 ----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 ----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             ----HHHHHHHHHHhcCCEEEEEecCC
Confidence                12344567778888888876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.54  E-value=0.0094  Score=47.61  Aligned_cols=78  Identities=24%  Similarity=0.336  Sum_probs=51.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCC------------------hh----HHHhc--Ccee--------cC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMD------------------PQ----LEKET--GAKF--------EE   84 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~------------------~~----~~~~~--g~~~--------~~   84 (221)
                      +|+|||+|.+|..+++.|...|.. +.++|.....                  .+    ...+.  .++.        ..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            589999999999999999999984 8888865310                  00    01111  1111        12


Q ss_pred             CHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                      +++++++++|+|+.|+ .+.+++..+.....+
T Consensus        81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~  111 (174)
T cd01487          81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG  111 (174)
T ss_pred             hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence            3456788899888884 466776656555544

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.53  E-value=0.0053  Score=49.49  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             CEEEEEccCHHHHHHHHH--HccCCCeE-EEEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQR--LKPFNCNL-LYHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~--l~~~G~~V-~~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -++.|||.|++|++++..  .+..|+++ .++|..+.... ......+...+++++.++  +.|+.++|+|.
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            368999999999999875  35788984 56887543111 111122344567788786  68899999993

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.53  E-value=0.022  Score=51.91  Aligned_cols=98  Identities=14%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             ccCCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577           31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        31 ~~~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +..+.|++|+|+|+          .+-+..+++.|...|.+|.+||+.-...+.....+.... + ...++.+|+|++++
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t  386 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV  386 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence            34689999999997          356888999999999999999986322222222332111 1 22467899999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      .-. +.+.+-.+...+.|+...+|||+ |+-+
T Consensus       387 ~h~-~f~~~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        387 GHQ-QFKQMGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             CCH-HhhcCCHHHHHHhcCCCCEEEEC-CCCC
Confidence            733 33332222333445545688884 5443

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.52  E-value=0.0097  Score=56.26  Aligned_cols=70  Identities=19%  Similarity=0.336  Sum_probs=49.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCCCCEEEEeCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVNTP  101 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVv~~~p  101 (221)
                      ..+..|||||||-|..|+.+++.++.+|++|+++|+.+..+.. ....-+ ..+.+   +.++++++|+|+.+..
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            3588999999999999999999999999999999986543221 111111 11234   4556678999877644

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.51  E-value=0.042  Score=49.54  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             cccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCCCC---h-hH-HHhcC-------ceecCCHHhhcCCCC
Q 027577           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMD---P-QL-EKETG-------AKFEEDLDTMLPKCD   94 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~~~---~-~~-~~~~g-------~~~~~~l~ell~~aD   94 (221)
                      .+..|+..||.+.|.|.-|-++++.+.+.|+   +|+.+|+...-   . +. .....       ...... ++.+..+|
T Consensus       193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~ad  271 (432)
T COG0281         193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGAD  271 (432)
T ss_pred             hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCC
Confidence            3567899999999999999999999999998   59999986421   1 10 00000       001111 44778899


Q ss_pred             EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCCCCCCCCCCeE
Q 027577           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQA  173 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g-~i~~a~lDV~~~ep~~~~~~l~~~~n~~  173 (221)
                      +++=+..     .+.+.++.++.|.++.+|.=+|.-.+--....+.....| .|.+      ..-|.   .|- +..|++
T Consensus       272 v~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd---~Pn-QvNNvL  336 (432)
T COG0281         272 VLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSD---YPN-QVNNVL  336 (432)
T ss_pred             EEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCC---Ccc-ccccee
Confidence            8876543     288999999999999999988876542222222222222 2331      11222   222 678999


Q ss_pred             ECCCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577          174 MTPHVSGTTID-------LRYAAGVKDMLDRYFK  200 (221)
Q Consensus       174 ~tPH~a~~t~~-------~~~~~~~~~~~~~~~~  200 (221)
                      +-|-|+-...+       +.|.....+.|..+..
T Consensus       337 ~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~  370 (432)
T COG0281         337 IFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR  370 (432)
T ss_pred             EcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc
Confidence            99999643333       4444445566666654

>PLN00106 malate dehydrogenase

Probab=96.51  E-value=0.0077  Score=52.90  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh---hHHHh---cCce---ecCCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP---QLEKE---TGAK---FEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~---~~~~~---~g~~---~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ..+||+|||. |++|..+|..|...+.  ++..+|..+...   +....   ..+.   ..+++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3569999999 9999999999975554  799999865221   11110   1121   123457889999999998643


Q ss_pred             --Ch-hhhh-cc------hH---HHHhcCCCCCEEEEcCCC
Q 027577          103 --TE-KTRG-MF------DK---DRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 --~~-~t~~-~i------~~---~~~~~mk~ga~lIn~srg  130 (221)
                        .+ .++. ++      -.   +.+....+.+++++++--
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP  137 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP  137 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence              11 1111 11      11   123334578899988653

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.50  E-value=0.017  Score=50.26  Aligned_cols=53  Identities=23%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCCHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD   87 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~   87 (221)
                      .|.+++|.|+|.+|.+++..++..|. +|+++|.++.+-+.++++|+..+-+..
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~  245 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK  245 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence            58999999999999999999999997 699999988777788888876543444

>PLN02740 Alcohol dehydrogenase-like

Probab=96.49  E-value=0.011  Score=52.63  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hcC-CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----MLP-KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~e----ll~-~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+-       ++.+    +.. ..|+|+-++.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G  277 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG  277 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 599998877666777777753211       1222    111 4788877765


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s  128 (221)
                      . +.    .-...+..++++ ..++.++
T Consensus       278 ~-~~----~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        278 N-VE----VLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             C-hH----HHHHHHHhhhcCCCEEEEEc
Confidence            2 11    123445566664 6666655

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.48  E-value=0.0051  Score=50.76  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             EEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC--hhHHHhcCceec-------CCHHhhcCCCCEEEEeCCCC
Q 027577           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        39 vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~-------~~l~ell~~aDvVv~~~p~~  103 (221)
                      |.|+|. |.+|+.+++.|...+++|.+.-|+..+  .+.++..|+..+       +++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            679995 999999999999999999999886522  223344565421       45667899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.47  E-value=0.0089  Score=55.04  Aligned_cols=111  Identities=17%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-Chh---HHHhcCcee-cCCHHhhcCCCCEEEEeC--C-CChh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK  105 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~---~~~~~g~~~-~~~l~ell~~aDvVv~~~--p-~~~~  105 (221)
                      +.|++|+|+|+|.-|.+.|+.|...|++|+++|.... ...   .+++.+... .....+.+.++|+||..-  | ..|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            5689999999999999999999999999999996432 111   122212111 112235667899988764  2 1221


Q ss_pred             h-------hhcchHHH--Hhc-CC-----CCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          106 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       106 t-------~~~i~~~~--~~~-mk-----~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      .       ..++.+-.  +.. ++     ...+-|.-+.|+--...-+.+.|+.
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            1       11233222  222 32     1345566667887777777777765

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.46  E-value=0.0099  Score=51.45  Aligned_cols=89  Identities=22%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVv~~~p~  102 (221)
                      .|.+|.|.| .|.+|...++.++..|.+|++.+++....+.++++|+..+      .++.+.+     ...|+|+-++. 
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G-  216 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG-  216 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence            588999999 5999999999999999999988876655566666675321      1222222     23678877665 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+    .+ ...++.++++..+|..+.
T Consensus       217 ~~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       217 GE----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             HH----HH-HHHHHHhCcCcEEEEecc
Confidence            11    12 456778888888888764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.46  E-value=0.012  Score=51.78  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDvVv~~~p~  102 (221)
                      .|++|.|.|.|.+|...++.++..|.+ |++.+++....+.++++|...+     .+..    ++..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            489999999999999999999999985 8888887666666677765321     1111    1222  37888877652


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       +.+   + ...+..++++..+|.++-
T Consensus       256 -~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       256 -PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -HHH---H-HHHHHHhccCCEEEEECC
Confidence             211   2 234566788888887764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.46  E-value=0.014  Score=50.26  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CCCCEEEEeCCCChhhhhcch
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -.|.+|.|.|.|.+|..+++.++..|.+|++.+.++...+.++++|+....+..+..  ...|+++-+.....     ..
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~  228 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GL  228 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HH
Confidence            358899999999999999999999999998888766555666667764332322222  34788887764211     12


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 027577          112 KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~s  128 (221)
                      ...++.++++..++..+
T Consensus       229 ~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         229 ELALRLVRPRGTVVLKS  245 (319)
T ss_pred             HHHHHHhhcCCEEEEEc
Confidence            34456677777777644

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=96.45  E-value=0.013  Score=50.67  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .|.+|.|+|.|.+|+.+++.++..|.+|++.+++....+...+.|.... ..    . ...-...|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            5789999999999999999999999999998887655555555554211 11    1 111235788887764211    


Q ss_pred             cchHHHHhcCCCCCEEEEcCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ...+.+..|+++..+++++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             23456778888888888863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd00704 MDH Malate dehydrogenase

Probab=96.45  E-value=0.025  Score=49.71  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCC--CChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV   96 (221)
                      .||+|+|. |.+|..+|..|...|.       ++..+|+..  ...+     .....     ++....+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998876443       588999864  2111     11110     112224567889999999


Q ss_pred             EEeCCC--Ch-hhh--------hcch--HHHHhcC-CCCCEEEEcCCCCccCHHH
Q 027577           97 VVNTPL--TE-KTR--------GMFD--KDRIAKM-KKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        97 v~~~p~--~~-~t~--------~~i~--~~~~~~m-k~ga~lIn~srg~~vd~~a  137 (221)
                      +++.-.  .+ +++        .++.  ...+... +|++++|.++  .++|.-.
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  133 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA  133 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence            987642  11 111        1111  0123334 5788888885  6666444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.44  E-value=0.015  Score=50.58  Aligned_cols=90  Identities=17%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh---cCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM---LPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el---l~~aDvVv~~~p~~~~t  106 (221)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+++....+.+.++|+..+     .++.+.   +...|+++-++....  
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--  240 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--  240 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence            5789999999999999999999999999999887655556666665321     112111   134677776543111  


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                         .....+..++++..+++++.
T Consensus       241 ---~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         241 ---AISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             ---HHHHHHHHcccCCEEEEEec
Confidence               22334566777777777654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.037  Score=50.45  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHh--cCceecC--CHHhhcCCCCEEEEeCCC---Chh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFEE--DLDTMLPKCDIVVVNTPL---TEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~~--~l~ell~~aDvVv~~~p~---~~~  105 (221)
                      ++-+|+|+|+|..|.++|+.|...|++|.++|......  +.+++  .|+....  .-.+.+.++|+|+..-.-   .|.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~   84 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA   84 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence            35689999999999999999999999999999754321  22333  2655421  123456789988775421   221


Q ss_pred             hh-------hcch-HHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          106 TR-------GMFD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       106 t~-------~~i~-~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ..       .++. .+.+.. ++...+-|--+.|+--...-+...|+.
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            11       1222 233322 333345566667887777767777765

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=96.44  E-value=0.033  Score=42.76  Aligned_cols=98  Identities=14%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             HHHHHHccCCCeEEEEcCCCC----ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577           50 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~~----~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                      ..++.|...|++|++=.-...    +.+...+.|+...++.++++++||+|+-.-|.        ..+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence            456778888999987654321    23444567888887778999999999877663        245677899999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus       126 n~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      ....-.  ....+++.|.+.++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            876544  588899999999999888875543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.42  E-value=0.025  Score=51.29  Aligned_cols=108  Identities=12%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--h---HHH-hcCceec--CCHHhhcCCCCEEEEeCCC---Chhh
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--Q---LEK-ETGAKFE--EDLDTMLPKCDIVVVNTPL---TEKT  106 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~---~~~-~~g~~~~--~~l~ell~~aDvVv~~~p~---~~~t  106 (221)
                      +|.|||+|..|.++|+.|+..|++|.++|......  .   ..+ ..|+...  .+ .+.+.++|+|+....-   +|+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            47899999999999999999999999999754321  1   122 2466532  23 4556789988775422   2221


Q ss_pred             h-------hcchH-HHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          107 R-------GMFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       107 ~-------~~i~~-~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      .       .++.+ +.+ ..++...+-|.-+.|+--...-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       12222 222 2233345556667888877777777777644

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.41  E-value=0.022  Score=50.09  Aligned_cols=98  Identities=20%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             EEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCC--h-----hHHHh-----cCceecCCHHhhcCCCCEEE
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD--P-----QLEKE-----TGAKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~--~-----~~~~~-----~g~~~~~~l~ell~~aDvVv   97 (221)
                      +|+|||. |.+|..+|..|...+.       ++..+|+.+..  .     +....     ..+....+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999876544       58899975421  1     00000     01111124467889999999


Q ss_pred             EeCCCCh---hhh-hcc--h----H---HHHhcC-CCCCEEEEcCCCCccCHHH
Q 027577           98 VNTPLTE---KTR-GMF--D----K---DRIAKM-KKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        98 ~~~p~~~---~t~-~~i--~----~---~~~~~m-k~ga~lIn~srg~~vd~~a  137 (221)
                      ++.-...   +++ .++  +    +   +.+... ++++++|.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            8764321   111 111  1    1   123334 4788888877  5555444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK08223 hypothetical protein; Validated

Probab=96.40  E-value=0.014  Score=50.30  Aligned_cols=93  Identities=16%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----cee-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKF-   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~-   82 (221)
                      ..|..++|.|||+|.+|..+++.|...|. ++.++|......                   +    ...+.+    +.. 
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999997 477777542110                   0    011111    111 


Q ss_pred             -----cCCHHhhcCCCCEEEEeCCCC-hhhhhcchHHHHhcCCCCCEEEEc
Q 027577           83 -----EEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus        83 -----~~~l~ell~~aDvVv~~~p~~-~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                           .++.+++++++|+|+-++..- -+++..+++.....   +.-+|..
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~  150 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA  150 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence                 135667888899888666421 25666676654432   4445554

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.40  E-value=0.016  Score=48.74  Aligned_cols=92  Identities=17%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCCCCEEEEeCCCChhhhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-el--l~~aDvVv~~~p~~~~t~~  108 (221)
                      -.|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.+++.| ........ ..  -...|+++.++....    
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----  171 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----  171 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----
Confidence            3588999999999999999999999999 988887655555555555 22111111 11  135898887765221    


Q ss_pred             cchHHHHhcCCCCCEEEEcCCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       .....+..++++..+++++-.
T Consensus       172 -~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         172 -ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             -HHHHHHHHhcCCcEEEEEecc
Confidence             234567788999999988643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.37  E-value=0.02  Score=50.15  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      .|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.++..+....  .+++.+  ..|+|+-++... .+...+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence            48999999999999999888875 54 679999987666666555444321  222222  379998887621 011112


Q ss_pred             hHHHHhcCCCCCEEEEcCC
Q 027577          111 DKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~sr  129 (221)
                       .+.++.++++..++.++-
T Consensus       240 -~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         240 -NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             -HHHHHhCcCCcEEEEEee
Confidence             346778899988887763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.37  E-value=0.013  Score=56.26  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (221)
                      -.|++|+|||.|..|.+.|..|...|++|.++++....                     .+.+...|+...        .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            46999999999999999999999999999999875321                     123344565421        1


Q ss_pred             CHHhhcCCCCEEEEeCCC
Q 027577           85 DLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~  102 (221)
                      +++++..+.|.|++++..
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            445666789999998754

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.011  Score=49.52  Aligned_cols=38  Identities=21%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      .++++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 89999999999999999999998753

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.36  E-value=0.014  Score=51.04  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C----CHHh---hcC--CCC-EEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DLDT---MLP--KCD-IVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l~e---ll~--~aD-vVv~~~p~  102 (221)
                      .|++|.|.|.|.+|...++.++.+|.+ |++.+++....+.+++.|+..+ .    +.++   +..  ..| +|+-|+..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~  239 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence            589999999999999999999999997 6788876655556666665321 1    1111   221  346 66666642


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       +.   .+ .+.++.++++..++.++
T Consensus       240 -~~---~~-~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        240 -PQ---TV-ELAIEIAGPRAQLALVG  260 (347)
T ss_pred             -HH---HH-HHHHHHhhcCCEEEEEc
Confidence             11   12 34567788888888875

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.35  E-value=0.048  Score=47.18  Aligned_cols=94  Identities=17%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHH----HhcC--ceecCCHHhhcCCCCEEEEeCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE----KETG--AKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~----~~~g--~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      |+|+|++.+|= .+|+.++......+|+++.+..|....+     +.+    ++.|  +...+++++.++.+|+|..-+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            89999999995 5799999999999999999888764222     112    2223  5567899999999999987654


Q ss_pred             CC--hhhh-----------hcchHHHHhcCCCCCEEEEc
Q 027577          102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       102 ~~--~~t~-----------~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .+  ++.+           .-++.+.++.-+++++|+.|
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            21  1111           23456666666667777666

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.35  E-value=0.05  Score=49.80  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC-------CC--eEEEEcCCCCChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~-------G~--~V~~~d~~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV   96 (221)
                      -+|+|||. |++|..+|-.|...       |.  +++.+|++....+     ..+..     .+....+..+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999988655       44  6888898654322     11111     222223445778999999


Q ss_pred             EEeCCC--Chh-h--------hhcchH--HHHhc-CCCCCEEEEcCCCCccCHHHHH
Q 027577           97 VVNTPL--TEK-T--------RGMFDK--DRIAK-MKKGVLIVNNARGAIMDTQAVV  139 (221)
Q Consensus        97 v~~~p~--~~~-t--------~~~i~~--~~~~~-mk~ga~lIn~srg~~vd~~al~  139 (221)
                      +++...  .+. +        ..++..  +.+.. -.+++++|.++  .++|.-..+
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v  235 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI  235 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence            998643  111 1        111111  12333 46788999887  556655543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.34  E-value=0.033  Score=42.65  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=28.5

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      +|.|||+|.+|..+++.|...|. ++.++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 589998653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.34  E-value=0.17  Score=49.31  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCCC----C---hhHHH-hc-CceecCCHHhhcCCCCEEEE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D---PQLEK-ET-GAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~~----~---~~~~~-~~-g~~~~~~l~ell~~aDvVv~   98 (221)
                      +..+...||.|.|.|.-|-.+++.|...|.   +++.+|+...    .   ....+ .+ .-....+++|+++.+|+++=
T Consensus       180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG  259 (752)
T PRK07232        180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG  259 (752)
T ss_pred             CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence            467889999999999999999999998898   6888887631    1   01111 11 00223589999999998764


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV  178 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~  178 (221)
                      + .    ..+.+.++.++.|.+..+|.=.|.-..--..+.......|.|.+-+-   ...|       -+..|+++-|-+
T Consensus       260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi  324 (752)
T PRK07232        260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP-------NQVNNVLCFPYI  324 (752)
T ss_pred             c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC-------Ccccceeecchh
Confidence            3 2    14789999999999999999998877522222222222344443321   1112       244688888887


Q ss_pred             CcC
Q 027577          179 SGT  181 (221)
Q Consensus       179 a~~  181 (221)
                      +-.
T Consensus       325 ~~g  327 (752)
T PRK07232        325 FRG  327 (752)
T ss_pred             hHH
Confidence            543

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.33  E-value=0.014  Score=53.50  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=65.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-Cceec-CCHHhhcCCCCEEEEeCCC---Chhh--
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNTPL---TEKT--  106 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~-~~l~ell~~aDvVv~~~p~---~~~t--  106 (221)
                      -.|++|+|+|+|.-|.+.++.|+. |++|+++|..........+. ..... ....+.+.++|+|+..-.-   +|..  
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~   82 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI   82 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence            358899999999999999999995 99999999543322211111 11111 1123456789988776422   2211  


Q ss_pred             -----hhcchH-HHH-hcCCC-CCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          107 -----RGMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       107 -----~~~i~~-~~~-~~mk~-ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                           ..++.+ +.+ ..+++ ..+=|--+.|+--...-+...|+..
T Consensus        83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence                 112322 232 23332 2344555678877777777777763

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=96.33  E-value=0.0074  Score=53.31  Aligned_cols=62  Identities=21%  Similarity=0.400  Sum_probs=44.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhcCceecCC---HHhhcCCCCEEEEe
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN   99 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~ell~~aDvVv~~   99 (221)
                      ||||||.|..|+.+++.++.+|++|+++|.++..+..  +...-+..+.+   +.++++.||+|...
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5999999999999999999999999999986543321  11100111234   56677889988654

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.31  E-value=0.015  Score=51.51  Aligned_cols=47  Identities=30%  Similarity=0.381  Sum_probs=39.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCce
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAK   81 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~   81 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~  232 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT  232 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence            58899999999999999999999999 799998876666666666653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.31  E-value=0.01  Score=48.93  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ++.++++.|+|. |.+|+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            477899999994 89999999999999999999998753

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.30  E-value=0.023  Score=49.50  Aligned_cols=77  Identities=17%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      -+|+|+| .|-.|..+.+.|.... +++.....+..         ... .+.+++++++|++++|+|.. ....+. ...
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~   69 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDD-AAREAV-SLV   69 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHH-HHHHHH-HHH
Confidence            3799999 5999999999998763 45554432221         111 24567778999999999933 222221 111


Q ss_pred             HhcCCCCCEEEEcC
Q 027577          115 IAKMKKGVLIVNNA  128 (221)
Q Consensus       115 ~~~mk~ga~lIn~s  128 (221)
                         .+.|+.+||.|
T Consensus        70 ---~~~g~~VIDlS   80 (310)
T TIGR01851        70 ---DNPNTCIIDAS   80 (310)
T ss_pred             ---HhCCCEEEECC
Confidence               25688999988

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.30  E-value=0.016  Score=51.95  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (221)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36899999999999999999999999998 58888875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.29  E-value=0.0079  Score=53.82  Aligned_cols=84  Identities=19%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC----ceec
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AKFE   83 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~~~   83 (221)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|......                   +    ...+.+    +...
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            46899999999999999999999999997 688888652100                   0    011111    1111


Q ss_pred             ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                            .+.+++++++|+|+.|+- +.+++.++++....
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                  245578889999877764 66777777765443

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.024  Score=56.76  Aligned_cols=84  Identities=23%  Similarity=0.291  Sum_probs=61.1

Q ss_pred             HHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhH
Q 027577           16 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQL   74 (221)
Q Consensus        16 ~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~   74 (221)
                      +..+| |-..   .+...-.|++|+|||-|..|-+.|..|...|+.|.+|.|+.+.                     .+.
T Consensus      1769 af~eg-wm~p---~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~l 1844 (2142)
T KOG0399|consen 1769 AFEEG-WMKP---CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844 (2142)
T ss_pred             HHHhc-CCcc---CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHH
Confidence            34444 7643   2233557999999999999999999999999999999986532                     112


Q ss_pred             HHhcCceec--------CCHHhhcCCCCEEEEeCCCC
Q 027577           75 EKETGAKFE--------EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        75 ~~~~g~~~~--------~~l~ell~~aDvVv~~~p~~  103 (221)
                      ....|+..+        .+++++.++-|.|++++..|
T Consensus      1845 l~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1845 LEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             HHhhCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence            233454322        47899999999999997544

>PRK08374 homoserine dehydrogenase; Provisional

Probab=96.28  E-value=0.016  Score=51.18  Aligned_cols=107  Identities=17%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             CEEEEEccCHHHHHHHHHHcc--------CC--CeEEEE-cCCC-------CChhHH----HhcC----ce-----ecCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLE----KETG----AK-----FEED   85 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~--------~G--~~V~~~-d~~~-------~~~~~~----~~~g----~~-----~~~~   85 (221)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.++ |++.       ...+.+    ++.+    +.     ...+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999998865        56  454433 4331       111111    0111    00     0115


Q ss_pred             HHhhc--CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577           86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus        86 l~ell--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      +++++  .++|+|+-+++. +.    ...-....++.|..+|-...|.+- ..++|.+..++.+..
T Consensus        83 ~~ell~~~~~DVvVd~t~~-~~----a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTND-KN----AHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCc-HH----HHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            67777  479999988752 21    222233456788888877776443 556676666555444

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.28  E-value=0.0071  Score=48.78  Aligned_cols=66  Identities=14%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      |||+||| -|.+|+.+++-+...|++|.++-|++.+....+.     ..+.-.+++.+.+..-|+||.+...
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            6899999 5999999999999999999999887643322111     1121123445678889999987643

>PRK07877 hypothetical protein; Provisional

Probab=96.27  E-value=0.013  Score=56.73  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCC------------------hhHHH----hc----Cceec
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMD------------------PQLEK----ET----GAKFE   83 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~------------------~~~~~----~~----g~~~~   83 (221)
                      ..|++++|+|+|+| +|..+|..|...|.  ++.++|.....                  .+.++    +.    .+..+
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            36899999999999 99999999998884  67777654210                  00011    11    11111


Q ss_pred             ------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhc
Q 027577           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (221)
Q Consensus        84 ------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~  117 (221)
                            ++++++++++|+|+-|+- +-+++.++++...+.
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                  357888999999988885 678888888766554

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.028  Score=51.08  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++.+++|.|+|+|..|.+.++.|+..|++|.++|......  +... .|+...  ....+.++..|+||.. |.-+....
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~   80 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVAS-PGIALAHP   80 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCH
Confidence            4668999999999999999999999999999999654322  1222 255432  1223456778976654 32221111


Q ss_pred             -----------cchH-HHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          109 -----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       109 -----------~i~~-~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                                 ++.+ +.+..+ +...+-|--+.|+--...-|...|+.
T Consensus        81 ~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         81 SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                       1221 333332 32344466667887777767777765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.23  E-value=0.028  Score=53.74  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC---------------------ChhHHHhcCceec--------C
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM---------------------DPQLEKETGAKFE--------E   84 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~   84 (221)
                      ..|++|.|||.|..|...|..|+..|++|.+|++...                     ..+.+...|+...        .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            4699999999999999999999999999999987642                     1123344555321        2


Q ss_pred             CHHhhcCCCCEEEEeCCC
Q 027577           85 DLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~  102 (221)
                      +++++....|.|++++..
T Consensus       388 ~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455666789999998864

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.22  E-value=0.025  Score=49.71  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             EEEEEccCHHHHHHHHHHccC----CCeEEEEcC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR   67 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~----G~~V~~~d~   67 (221)
                      +|||+|+|+||+.+.+.+...    +++|...+.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998754    377776653

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08328 hypothetical protein; Provisional

Probab=96.21  E-value=0.017  Score=48.32  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (221)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999997 47788754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.20  E-value=0.016  Score=50.53  Aligned_cols=64  Identities=16%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHhc------CceecCCHHhhcCCCCEEEEeCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKET------GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ||+|||.|.+|..+|..|...+.  ++..+|......+     .....      .+.....-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            68999999999999998876665  6999998643221     11110      11111122467899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.20  E-value=0.0069  Score=53.88  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (221)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 47778764

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.19  E-value=0.021  Score=50.49  Aligned_cols=47  Identities=26%  Similarity=0.230  Sum_probs=38.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCc
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ..|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga  230 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA  230 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence            358999999999999999999999999 69888886655556666665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.19  E-value=0.023  Score=48.95  Aligned_cols=90  Identities=22%  Similarity=0.297  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      -.|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++..|+....+.++ .-+..|+++.+.+..     ....
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~-----~~~~  240 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG-----ALVP  240 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH-----HHHH
Confidence            3578999999999999999999999999988887665555556666643212221 113468777765421     1234


Q ss_pred             HHHhcCCCCCEEEEcC
Q 027577          113 DRIAKMKKGVLIVNNA  128 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~s  128 (221)
                      +.+..++++..++..+
T Consensus       241 ~~~~~l~~~G~~v~~g  256 (329)
T cd08298         241 AALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHHhhcCCEEEEEc
Confidence            5677788888887654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.19  E-value=0.032  Score=48.82  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVv~~~p~  102 (221)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.+++....+.+.+.|+..+     .++    .++..  ..|+|+-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 78888876555555555565321     111    22222  38999888752


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..     .....+..++++..++.++.
T Consensus       252 ~~-----~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QA-----TLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HH-----HHHHHHHhccCCCEEEEEcc
Confidence            11     12345677888888888764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.17  E-value=0.026  Score=49.89  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCc
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (221)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+.++++|+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga  233 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV  233 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            58999999999999999999999999 79999887666666666665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=96.16  E-value=0.031  Score=48.40  Aligned_cols=92  Identities=22%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~--------l~ell~--~aDvVv~~~p~~  103 (221)
                      .|++|.|.|.|.+|..+++.++..| .+|++.++++...+.+++.|+..+.+        +.++..  ..|+++-+.+..
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~  246 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD  246 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence            5889999999999999999999998 89988887665555556666532211        222332  478888776521


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +     ...+.+..++++..++.++..+
T Consensus       247 ~-----~~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         247 E-----TLALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEcCCC
Confidence            1     2344567778888888876543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=96.15  E-value=0.026  Score=48.47  Aligned_cols=89  Identities=15%  Similarity=0.077  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH----hhc-----CCCCEEEEeCCCCh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD----TML-----PKCDIVVVNTPLTE  104 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~----ell-----~~aDvVv~~~p~~~  104 (221)
                      .+.+|.|+|. |.+|..+++.++..|.+|++.++++...+.+++.|+..+.+.+    +.+     ...|+|+-++.. +
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-~  224 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-K  224 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH-H
Confidence            3689999998 9999999999999999999888776555666666653221111    111     236777666541 1


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                           ...+.+..++++..+|.++.
T Consensus       225 -----~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         225 -----TLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             -----HHHHHHHHhhcCCEEEEEee
Confidence                 12345677788888887764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.15  E-value=0.014  Score=55.37  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDR   67 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~   67 (221)
                      ..|.+.+|.|||+|.+|..+|+.|.+.|.. ++++|.
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            468899999999999999999999999984 777764

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.14  E-value=0.021  Score=49.66  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CCCCEEEEeCCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDvVv~~~p~  102 (221)
                      |.+|.|.|. |.+|...++.++.+|+ +|++.+++....+.+.+ +|+..+     .++.+.+     ...|+|+-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999997 9999999999999999 79988876544444443 565321     1222222     247888877651


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       +    .+ .+.+..++++..+|.++
T Consensus       235 -~----~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 -E----IS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             -H----HH-HHHHHHhccCCEEEEEe
Confidence             1    12 45677788888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.14  E-value=0.026  Score=49.33  Aligned_cols=77  Identities=18%  Similarity=0.167  Sum_probs=50.0

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      .+|+||| .|..|+.+.+.|.... +++.....+... .      .   .+.++.++++|++|+|+|.... .. +-.+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~s-~~-~~~~~   70 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDAA-RE-AVALI   70 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHHH-HH-HHHHH
Confidence            5899999 6999999999998765 355444332211 1      1   2334566789999999993221 11 21222


Q ss_pred             HhcCCCCCEEEEcC
Q 027577          115 IAKMKKGVLIVNNA  128 (221)
Q Consensus       115 ~~~mk~ga~lIn~s  128 (221)
                         .+.|+.+||.|
T Consensus        71 ---~~~g~~VIDlS   81 (313)
T PRK11863         71 ---DNPATRVIDAS   81 (313)
T ss_pred             ---HhCCCEEEECC
Confidence               25688999988

>PRK12862 malic enzyme; Reviewed

Probab=96.13  E-value=0.1  Score=50.92  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=89.9

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCC-----CC-------hhHHHhcCceecCCHHhhcCCCCE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD-------PQLEKETGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~~-------~~~~~~~g~~~~~~l~ell~~aDv   95 (221)
                      +..+...||.|.|.|.-|..+|+.|...|.   +++.+|+..     ..       ...++..   ...+|+|+++.+|+
T Consensus       188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v  264 (763)
T PRK12862        188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV  264 (763)
T ss_pred             CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence            467889999999999999999999998898   688899653     11       1122221   23589999999998


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEEC
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~t  175 (221)
                      ++=+..     .+.+.++.++.|.+..+|.-.|.-..--..+.......|.|.+-+         ..+.| -+..|+++-
T Consensus       265 ~iG~s~-----~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atG---------rs~~p-~Q~NN~~~F  329 (763)
T PRK12862        265 FLGLSA-----AGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATG---------RSDYP-NQVNNVLCF  329 (763)
T ss_pred             EEEcCC-----CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEEC---------CcCCC-Ccccceeec
Confidence            865432     478999999999999999999887652112222222224444332         11111 235689999


Q ss_pred             CCCCcC
Q 027577          176 PHVSGT  181 (221)
Q Consensus       176 PH~a~~  181 (221)
                      |=++-.
T Consensus       330 Pgi~~g  335 (763)
T PRK12862        330 PYIFRG  335 (763)
T ss_pred             cchhhh
Confidence            987543

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=96.12  E-value=0.023  Score=49.89  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CCCCEEEEe
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDvVv~~   99 (221)
                      .|++|.|.|.|.+|..+++.++..|. +|++.+++....+.++++|+..+   .  +       +.++.  +..|+++-+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            68899999999999999999999999 89888876544555555665321   1  1       11122  246888777


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .....     .....+..++++..++.++.
T Consensus       257 ~g~~~-----~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         257 SGHPA-----AVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCChH-----HHHHHHHHhccCCEEEEEcC
Confidence            64211     22345677788888887764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.12  E-value=0.024  Score=48.80  Aligned_cols=66  Identities=23%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCCCCEEEEe
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDvVv~~   99 (221)
                      |++|.|.| .|.||+.+++.|...|++|.+.+++.........   .     .+.       ....++++++.+|+|+-+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   83 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT   83 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence            68999999 6999999999999999999988875432211110   0     111       113466778889988776


Q ss_pred             CC
Q 027577          100 TP  101 (221)
Q Consensus       100 ~p  101 (221)
                      ..
T Consensus        84 A~   85 (322)
T PLN02662         84 AS   85 (322)
T ss_pred             CC
Confidence            64

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.11  E-value=0.017  Score=47.34  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ++++++|.|.|. |.||..+++.+...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 88999999999999999999998653

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.09  E-value=0.022  Score=49.58  Aligned_cols=88  Identities=25%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|.|. |.+|..+++.++.+|.+|++..++....+.+++ +|+..+      .++.+.+     ...|+|+-++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            5899999997 999999999999999999888876555555555 665311      1222211     24677776654


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .  .    ...+.+..++++..++..+
T Consensus       231 ~--~----~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         231 G--K----MLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             H--H----HHHHHHHHhccCcEEEEec
Confidence            1  1    1234567777877777765

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.09  E-value=0.02  Score=50.47  Aligned_cols=88  Identities=24%  Similarity=0.228  Sum_probs=59.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|.|. |.+|...++.++.+|++|++.+++....+.++ ++|+..+      .++.+.+     ...|+++-++.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG  237 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG  237 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence            5899999998 99999999999999999998887654444444 4665321      1232222     13688877664


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       .+     .....+..++++..++.++
T Consensus       238 -~~-----~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        238 -GD-----MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -HH-----HHHHHHHHhccCCEEEEEC
Confidence             11     2244667788888887765

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=96.07  E-value=0.032  Score=49.21  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceec---CC---HHhhcCCCCEEEEeCCCChhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ..|.++.|.|.|.+|...++.++..|.+|++.+++..... ..+.+|+...   .+   +.+.....|+++-+++...  
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--  256 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--  256 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence            3688999999999999999999999999888876543332 2234565321   11   2223345799988876221  


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                         .....+..++++..++.++.
T Consensus       257 ---~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        257 ---PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ---HHHHHHHHhccCCEEEEECC
Confidence               22345677889999998874

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.068  Score=48.67  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             CCC-CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCCh--hHHHhcCceec-C-CHHhhcCCCCEEEEeCCC---C
Q 027577           34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE-E-DLDTMLPKCDIVVVNTPL---T  103 (221)
Q Consensus        34 l~g-~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~-~-~l~ell~~aDvVv~~~p~---~  103 (221)
                      +.+ ++|.|||+|..|.+.++.|...  |++|.++|......  +..+. |+... . .-.+.+.++|+|+....-   +
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~   82 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALAT   82 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence            556 7899999999999999999776  58899999654222  12222 66542 1 123445789988775422   2


Q ss_pred             hhhh-------hcch-HHHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          104 EKTR-------GMFD-KDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       104 ~~t~-------~~i~-~~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      |...       .++. .+.+ ..++...+-|--+.|+.-...-+...|+.
T Consensus        83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            2211       1222 2333 22343345566667887777767777765

>PRK07411 hypothetical protein; Validated

Probab=96.03  E-value=0.015  Score=52.44  Aligned_cols=87  Identities=23%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------h----HHHhcC--c--ee-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG--A--KF-   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g--~--~~-   82 (221)
                      ..|...+|.|||+|.+|..+|+.|...|. ++.++|......                   +    ...+.+  +  .. 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46899999999999999999999999998 477777642110                   0    001111  1  11 


Q ss_pred             ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCC
Q 027577           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  119 (221)
Q Consensus        83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk  119 (221)
                         .  .+..+++.++|+|+.|+- +.+++.++++.....-+
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~  154 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNK  154 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence               1  234567889998887763 66677777766554433

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.03  E-value=0.035  Score=48.49  Aligned_cols=49  Identities=29%  Similarity=0.356  Sum_probs=43.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE   83 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~   83 (221)
                      .|.++.|+|.|.||-.....++++|. +|++.|..+...+.++++|++.+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~  218 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT  218 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence            48999999999999999999999998 59999988878888888887654

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.02  E-value=0.06  Score=48.67  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CCCCEEEEeC--C-CChhh---hh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKT---RG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDvVv~~~--p-~~~~t---~~  108 (221)
                      ++|.|+|+|..|.++|+.|+ .|.+|.++|..+.... ..+.|+... + ++.+  +++|+|+..-  | .+|..   +.
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            47899999999999999999 9999999995432221 233466543 2 2234  4689887653  2 22221   11


Q ss_pred             cchH-HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       109 ~i~~-~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ++.+ +.+..+.+..+-|--+.|+.-...-+...|+.
T Consensus        77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~  113 (401)
T PRK03815         77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED  113 (401)
T ss_pred             HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            2222 22222223355566677887777777777775

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.01  E-value=0.016  Score=51.23  Aligned_cols=86  Identities=19%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             EEEEEc-cCHHHHHHHHHHccCCCe---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCCCCEEEEeCCCChhhhhcch
Q 027577           38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        38 ~vgIIG-~G~iG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +|+||| .|.+|+.+++.|...++.   +.++.+.....+.....+.. .+.++ .+.++++|+|++|+|... +.. +.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~-~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKE-FA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHH-HH
Confidence            589999 799999999999886664   33333322111111111211 11111 234588999999999332 221 11


Q ss_pred             HHHHhcCCCCCEEEEcC
Q 027577          112 KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~s  128 (221)
                      ..   .++.|+.+||.+
T Consensus        79 ~~---~~~~G~~VID~s   92 (339)
T TIGR01296        79 PK---AAKCGAIVIDNT   92 (339)
T ss_pred             HH---HHHCCCEEEECC
Confidence            22   235688899887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=96.00  E-value=0.032  Score=48.58  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---C---CHHh----hcC-CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~l~e----ll~-~aDvVv~~~p~~  103 (221)
                      .|++|.|.|.|.+|..+++.++..|.+|++.+++....+.+.+.|+..+   .   ++.+    +.. ..|+++-++.. 
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-  243 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI-  243 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence            5789999999999999999999999999988876555555555665311   1   1111    111 47888877642 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..    .....+..|+++..+++++.
T Consensus       244 ~~----~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         244 PE----TCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             HH----HHHHHHHHhhcCCEEEEeCC
Confidence            11    22345677888888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK15076 alpha-galactosidase; Provisional

Probab=95.99  E-value=0.019  Score=52.42  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CEEEEEccCHHHHHHHH--HH---ccC-CCeEEEEcCCCCChhHH--------HhcC----ceecCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~ell~~aDvVv~   98 (221)
                      +||+|||.|++|...+-  .+   .++ +.+|..+|..+...+..        ...+    +....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955433  22   223 45899999875333211        1112    3345677899999999999


Q ss_pred             eCCC
Q 027577           99 NTPL  102 (221)
Q Consensus        99 ~~p~  102 (221)
                      +...
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            8754

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.99  E-value=0.011  Score=51.28  Aligned_cols=96  Identities=22%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--------------ec----------CCHH
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FE----------EDLD   87 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~----------~~l~   87 (221)
                      -.....++-++|+|-+|-..+......|+-|..+|..+...+..+..|.+              ..          .-+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            35677888999999999999999999999999988654332222222211              00          1134


Q ss_pred             hhcCCCCEEEEe--CCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           88 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        88 ell~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.+++.|+||.+  .|.-| .-.++.++..+.||||+++||.+
T Consensus       240 ~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         240 EQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence            566889999875  35333 34578899999999999999986

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.98  E-value=0.014  Score=54.93  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=48.1

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---------cC------cee----c---CCHHhhc
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AKF----E---EDLDTML   90 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---------~g------~~~----~---~~l~ell   90 (221)
                      -.|++|.|.|. |.||+.+++.|...|++|.+++|+....+....         .|      +..    +   +++++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46889999995 999999999999999999999886543321110         01      111    1   2344567


Q ss_pred             CCCCEEEEeCCC
Q 027577           91 PKCDIVVVNTPL  102 (221)
Q Consensus        91 ~~aDvVv~~~p~  102 (221)
                      ..+|+||.+...
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            889999988653

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=95.98  E-value=0.015  Score=48.90  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577           60 CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus        60 ~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      .+|.+++|+....+. ..++|+....+..++++++|+|++|++  |....-+-.+.-..++++.+||.++-|  +..+.|
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~~~~~~~~~ivS~~ag--i~~~~l   85 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELKSEKGKDKLLISIAAG--VTLEKL   85 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHhhhccCCCEEEEecCC--CCHHHH
Confidence            468999997644333 344577767788899999999999999  433222223333345667899999887  566777


Q ss_pred             HHHHHh
Q 027577          139 VDACSS  144 (221)
Q Consensus       139 ~~al~~  144 (221)
                      .+.+..
T Consensus        86 ~~~~~~   91 (245)
T TIGR00112        86 SQLLGG   91 (245)
T ss_pred             HHHcCC
Confidence            776653

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.98  E-value=0.023  Score=46.29  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (221)
                      ..|++++|.|||+|.+|..+++.|...|.. +.++|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468899999999999999999999999985 8888865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=95.97  E-value=0.044  Score=46.62  Aligned_cols=91  Identities=23%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CCCCEEEEeCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVv~~~p  101 (221)
                      -.|.+|.|.|.|.+|..+++.++..|++ |++..+.....+.....|+..+     .++    .++.  ...|+++-+..
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g  207 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG  207 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            3588999999999999999999999999 8888765544444455554211     112    1222  23788877654


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..     ......+..|+++..+++++.
T Consensus       208 ~~-----~~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         208 HQ-----WPLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CH-----HHHHHHHHHhccCCEEEEEcc
Confidence            11     122345667788888887763

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.96  E-value=0.02  Score=50.39  Aligned_cols=65  Identities=17%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCC-------CeEEEEcCCCCC--hh-----HHH-----hcCceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQ-----LEK-----ETGAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G-------~~V~~~d~~~~~--~~-----~~~-----~~g~~~~~~l~ell~~aDvV   96 (221)
                      .+|+|+|. |.+|..++..|...+       .+|.++|+.+..  .+     ..+     ...+....++.+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            37999998 999999999987644       479999985421  11     110     00111235667889999999


Q ss_pred             EEeCC
Q 027577           97 VVNTP  101 (221)
Q Consensus        97 v~~~p  101 (221)
                      +.+.-
T Consensus        83 I~tAG   87 (325)
T cd01336          83 ILVGA   87 (325)
T ss_pred             EEeCC
Confidence            98764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.96  E-value=0.014  Score=50.20  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=45.9

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p  101 (221)
                      ++|.|.| .|.||+.+++.|...|++|++.+++..........++..       .++++++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4789998 599999999999999999999998653322111122221       1245667788999887764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.96  E-value=0.028  Score=49.77  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~-------~l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++....+.++++|+..+-       ++.+.+     ..+|+|+-++.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g  265 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG  265 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence            48999999999999999999999999 699998876666666666653211       121211     13677777664


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s  128 (221)
                      ...     ...+.+..++++ ..++.++
T Consensus       266 ~~~-----~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         266 NVK-----VMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             ChH-----HHHHHHHhhccCCCeEEEEc
Confidence            211     123345566664 5666554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK08324 short chain dehydrogenase; Validated

Probab=95.92  E-value=0.021  Score=54.99  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             cCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ..+.|+++.|.| .|.||+.+++.|...|++|++.+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            357899999999 599999999999999999999998753

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.90  E-value=0.031  Score=49.36  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCC-CeEEEE-cCCCCChhHHH-hc------C----ce--ecCC-HHhhcCCCCEEEEe
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFN-CNLLYH-DRVKMDPQLEK-ET------G----AK--FEED-LDTMLPKCDIVVVN   99 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~-~~------g----~~--~~~~-l~ell~~aDvVv~~   99 (221)
                      ++|+|+|. |.+|+.+++.+.... +++... +.......... ..      +    ..  .+.+ .++.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999997765 676655 43221111110 00      0    01  0111 12345789999999


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +|.... ..+. .   .....|..+|+.|
T Consensus        81 ~p~~~s-~~~~-~---~~~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVA-EEVE-P---KLAEAGKPVFSNA  104 (341)
T ss_pred             CCHHHH-HHHH-H---HHHHCCCEEEECC
Confidence            994322 1111 2   1234577777765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK10083 putative oxidoreductase; Provisional

Probab=95.90  E-value=0.039  Score=47.81  Aligned_cols=92  Identities=23%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHcc-CCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----CCCEEEEeCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~----~aDvVv~~~p~  102 (221)
                      -.|.+|.|+|.|.+|..+++.++. +|.+ +++.++++.+.+.+.+.|+..+     .++.+.+.    +.|+++-++..
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~  238 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH  238 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence            358899999999999999999986 6986 6777776655566666666422     12233332    24567666542


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       +.    ...+.+..++++..+|+++..
T Consensus       239 -~~----~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        239 -PS----ILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             -HH----HHHHHHHHhhcCCEEEEEccC
Confidence             11    124456778888888888643

>PLN02827 Alcohol dehydrogenase-like

Probab=95.89  E-value=0.038  Score=49.29  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-C------CHHhhc----C-CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDTML----P-KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~------~l~ell----~-~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++|+..+ +      +..+.+    . ..|+|+-++.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  272 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG  272 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence            589999999999999999999999985 7788876655566666675321 1      111111    1 3677777664


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s  128 (221)
                      ...    .+ ...+..++++ ..++.++
T Consensus       273 ~~~----~~-~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        273 DTG----IA-TTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             ChH----HH-HHHHHhhccCCCEEEEEC
Confidence            211    11 2345566676 6666654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=95.87  E-value=0.11  Score=46.69  Aligned_cols=99  Identities=21%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEE--cCCCCChh-----HHHhc-----CceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYH--DRVKMDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~--d~~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV   96 (221)
                      .||+|||. |++|..+|-.+...|.       .+..+  |.+....+     ..+..     .+....+..+.+++||+|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV  124 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA  124 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence            58999999 9999999998865543       24444  65443221     11111     222223445778999999


Q ss_pred             EEeCCC--Ch-hhh--------hcc---hHHHHhcCCCCCEEEEcCCCCccCHHH
Q 027577           97 VVNTPL--TE-KTR--------GMF---DKDRIAKMKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        97 v~~~p~--~~-~t~--------~~i---~~~~~~~mk~ga~lIn~srg~~vd~~a  137 (221)
                      +++...  .+ +++        .++   .....+.-++++++|.++  .++|.-.
T Consensus       125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t  177 (387)
T TIGR01757       125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNA  177 (387)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHH
Confidence            997642  11 111        111   111222234788888887  5555444

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.87  E-value=0.016  Score=43.93  Aligned_cols=119  Identities=20%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      +.....+.|+. |++|.+++..  ..           +++.+.++++|+++.... +     .++++.++.++.=..|..
T Consensus         7 ~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~-~-----~~~~~~l~~~~~Lk~I~~   66 (133)
T PF00389_consen    7 LPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSG-T-----PLTAEVLEAAPNLKLIST   66 (133)
T ss_dssp             -SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTT-S-----TBSHHHHHHHTT-SEEEE
T ss_pred             CCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCC-C-----CcCHHHHhccceeEEEEE
Confidence            34445556666 6677777721  11           134567788999987654 1     366777777744445555


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC-CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577          127 NARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       127 ~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~-~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~  203 (221)
                      .+-| + |.-++..+ .+.+|.  ..-+-..-+. .+++-              |+|.+  .++...+.+|+.+|++|++
T Consensus        67 ~~~G-~-d~id~~~a-~~~gI~--V~n~~g~~~~aVAE~a--------------~~T~e~~~~~~~~~~~ni~~~l~g~~  127 (133)
T PF00389_consen   67 AGAG-V-DNIDLEAA-KERGIP--VTNVPGYNAEAVAEHA--------------GYTDEARERMAEIAAENIERFLNGEP  127 (133)
T ss_dssp             SSSS-C-TTB-HHHH-HHTTSE--EEE-TTTTHHHHHHHH--------------TGBHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             cccc-c-CcccHHHH-hhCeEE--EEEeCCcCCcchhccc--------------hhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4444 3 44344444 444454  2221111110 01111              78888  7777889999999999987


Q ss_pred             C
Q 027577          204 F  204 (221)
Q Consensus       204 ~  204 (221)
                      +
T Consensus       128 ~  128 (133)
T PF00389_consen  128 P  128 (133)
T ss_dssp             -
T ss_pred             C
Confidence            5

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.86  E-value=0.039  Score=48.21  Aligned_cols=89  Identities=20%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVv~~~p~  102 (221)
                      .|++|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+     .++    .++.  ...|+++-++..
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            488999999999999999999999995 8888876555555566665321     111    1222  247888776652


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      . .    .-.+.+..++++..+|+++
T Consensus       246 ~-~----~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         246 Q-D----TFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             H-H----HHHHHHHHhhcCCEEEEec
Confidence            1 1    1234566678888888765

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=95.85  E-value=0.029  Score=49.60  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHcc--CC-CeEEEEcCCCCChhH--HHhcCceecCCHHhh-cCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKP--FN-CNLLYHDRVKMDPQL--EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~--~G-~~V~~~d~~~~~~~~--~~~~g~~~~~~l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      .+.+|+|||. |.+|+.+.+.|..  +- .++..+......-+.  +....... .++++. ++++|++++++|..    
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v-~~~~~~~~~~~Dvvf~a~p~~----   77 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTV-QDAAEFDWSQAQLAFFVAGRE----   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEE-EeCchhhccCCCEEEECCCHH----
Confidence            4679999995 9999999999987  43 355544322111110  11111222 244443 37899999999932    


Q ss_pred             hcchHHHHhc-CCCCCEEEEcC
Q 027577          108 GMFDKDRIAK-MKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~-mk~ga~lIn~s  128 (221)
                        +..+.... .+.|+.+||.|
T Consensus        78 --~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         78 --ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             --HHHHHHHHHHHCCCEEEECC
Confidence              22222222 25689999988

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=95.85  E-value=0.049  Score=46.59  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +.+|.|.|. |.+|..+++.++..|.+|++.+++....+.+.+.|.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~  192 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGA  192 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence            568999997 999999999999999999988887655555555554

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.85  E-value=0.049  Score=50.13  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCceec------C--
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE------E--   84 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~------~--   84 (221)
                      -.+++|.|||.|.+|...|..|+..|++|.++++.+..                     .+.+.+.|+...      .  
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            37899999999999999999999999999999865421                     233455665421      1  


Q ss_pred             CHHhhcCCCCEEEEeCCCCh
Q 027577           85 DLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        85 ~l~ell~~aDvVv~~~p~~~  104 (221)
                      .++++....|.|++++...+
T Consensus       219 ~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       219 SLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             CHHHHHhcCCEEEEEeCCCC
Confidence            34555567999999986543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.83  E-value=0.049  Score=47.32  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC-----CHHh--hc--CCCCEEEEeCCCCh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE  104 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--ll--~~aDvVv~~~p~~~  104 (221)
                      .|.+|.|.|. |.+|..+++.++..|.+|++.+.+. ..+.+++.|+..+.     ...+  ..  +..|+++-+... +
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~  254 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P  254 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence            5889999998 9999999999999999988777544 44455555542211     1111  11  347888776651 1


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                           .....+..++++..+|+++
T Consensus       255 -----~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         255 -----LFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             -----HHHHHHHHhccCCEEEEec
Confidence                 2244567778888887764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.78  E-value=0.036  Score=46.43  Aligned_cols=87  Identities=23%  Similarity=0.430  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH----hcCce--e-cCCHHhhcC---CCCEEEE-----
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----ETGAK--F-EEDLDTMLP---KCDIVVV-----   98 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~----~~g~~--~-~~~l~ell~---~aDvVv~-----   98 (221)
                      +.|++|.=||+|  |..++..+...|.+|++.|.++...+.++    +.++.  + ..+.+++..   +.|+|++     
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            789999999998  55788888889999999999876666554    22332  1 234566664   6899876     


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEE
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      |+| +|+.   +-....+.+|||.+++-
T Consensus       136 Hv~-dp~~---~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         136 HVP-DPES---FLRACAKLVKPGGILFL  159 (243)
T ss_pred             ccC-CHHH---HHHHHHHHcCCCcEEEE
Confidence            455 2221   44557778899877754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.77  E-value=0.04  Score=50.29  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHH-----hhcCCCCEEEEeCCCChh
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~-----ell~~aDvVv~~~p~~~~  105 (221)
                      +|.|||+|..|.+.|+.|...|++|.++|+.....     +.....|+...  ...+     +.+.+.|.|+......+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            68999999999999999999999999999764321     12334466432  1111     356789988875432222


Q ss_pred             hhh----------cchH-HHH-hcCCC-CCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          106 TRG----------MFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       106 t~~----------~i~~-~~~-~~mk~-ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ...          ++.+ +.+ ..+++ ..+-|--+.|+--...-|...|+..
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~  134 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA  134 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            111          1221 222 33333 3455666678777676666777653

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.77  E-value=0.032  Score=43.38  Aligned_cols=87  Identities=22%  Similarity=0.309  Sum_probs=51.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ..|++|++||+   =.++++.++..+.++.++|+++....  ...+.......++++++||+|+++-.  .-..+-+ ..
T Consensus         9 ~~~~~V~~VG~---f~P~~~~l~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~   80 (147)
T PF04016_consen    9 GPGDKVGMVGY---FQPLVEKLKERGAEVRVFDLNPDNIG--EEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD   80 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred             cCCCEEEEEcC---cHHHHHHHhcCCCCEEEEECCCCCCC--CCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence            56999999996   12377888888999999998762211  11111134567889999999988753  1111112 24


Q ss_pred             HHhcCCCCCEEEEcC
Q 027577          114 RIAKMKKGVLIVNNA  128 (221)
Q Consensus       114 ~~~~mk~ga~lIn~s  128 (221)
                      .++..++++.++=.+
T Consensus        81 iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   81 ILELARNAREVILYG   95 (147)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCccCCeEEEEe
Confidence            555566565555444

; PDB: 3L5O_B 3NPG_A.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.76  E-value=0.057  Score=45.81  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CCCCEEEEeCCCChhhhhcch
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell-~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .|.++.|.|. |.+|+.+++.++.+|.+|+..+++....+.+++.|+.. ....+++. ...|+++-++..    .  ..
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~--~~  205 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----P--QL  205 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----H--HH
Confidence            5899999998 99999999999999999998887655555555566521 11111222 247777766541    1  23


Q ss_pred             HHHHhcCCCCCEEEEcCC
Q 027577          112 KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~sr  129 (221)
                      ...+..|+++..+|+++.
T Consensus       206 ~~~~~~l~~~G~~v~~g~  223 (305)
T cd08270         206 ARALELLAPGGTVVSVGS  223 (305)
T ss_pred             HHHHHHhcCCCEEEEEec
Confidence            456778888888888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=95.76  E-value=0.053  Score=46.89  Aligned_cols=90  Identities=24%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceec------CCHH----hhcCCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----ell~~aDvVv~~~p~~  103 (221)
                      .|.+|.|.|.|.+|..+++.++. +|.+|++.++++...+.+++.|+..+      .+..    +.....|+++++.. .
T Consensus       162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~-~  240 (338)
T PRK09422        162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV-A  240 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-C
Confidence            57899999999999999999997 59999999887666666666665321      1111    22234575655543 1


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..    .-...++.++++..++.++.
T Consensus       241 ~~----~~~~~~~~l~~~G~~v~~g~  262 (338)
T PRK09422        241 KA----AFNQAVDAVRAGGRVVAVGL  262 (338)
T ss_pred             HH----HHHHHHHhccCCCEEEEEee
Confidence            21    23455677788888887753

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=95.75  E-value=0.12  Score=44.97  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh-h--------HHHhcCce--ecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g~~--~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|+||++||- -++.++++..+..+|++|.+..|....+ +        .++..|..  ..+++ +.++.+|+|..-.
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            588999999996 4688999999999999999998754221 1        12233543  34565 5789999998744

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=95.75  E-value=0.043  Score=47.62  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CCCCEEEEeCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~ell--~~aDvVv~~~p~  102 (221)
                      ..|.+|.|.|.|.+|..+++.++..|+ +|++.+......+.+.++|+..+    .+.    .++.  ...|+++-+...
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~  245 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG  245 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            358999999999999999999999997 78888665444444455563211    111    1222  347888777652


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      .     ......+..|+++..+|.++...
T Consensus       246 ~-----~~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         246 A-----AALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             H-----HHHHHHHHhcccCCEEEEECcCC
Confidence            1     12344567788888888887543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.061  Score=44.35  Aligned_cols=37  Identities=30%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999995 8999999999999999999888754

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=95.71  E-value=0.055  Score=47.00  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=53.6

Q ss_pred             EEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-HH----Hh-----cCceecCCHHhhcCCCCEEEEeCCCC--h-h
Q 027577           41 TVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LE----KE-----TGAKFEEDLDTMLPKCDIVVVNTPLT--E-K  105 (221)
Q Consensus        41 IIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~----~~-----~g~~~~~~l~ell~~aDvVv~~~p~~--~-~  105 (221)
                      |||.|.+|..+|..+...+.  ++..+|......+ .+    ..     ..+....+-.+.+++||+|+++.-..  + .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            69999999999999876665  6999998653221 11    11     11222223356789999999986431  1 1


Q ss_pred             hh--------hcch--HHHHhcCCCCCEEEEcC
Q 027577          106 TR--------GMFD--KDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~--------~~i~--~~~~~~mk~ga~lIn~s  128 (221)
                      ++        .++.  .+.+....|.+++|+++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            11        1111  11233356889999987

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.70  E-value=0.0076  Score=44.90  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----C----CHHhhcC--CCCEEEEeCCCChhhhhcchHHHH
Q 027577           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E----DLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        47 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~----~l~ell~--~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ||...++.++.+|.+|++.++++...+.++++|+..+     .    .+.++..  ..|+|+-|++. ++    .....+
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~----~~~~~~   76 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-GD----TLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-HH----HHHHHH
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-HH----HHHHHH
Confidence            7888888899999999999998777778888885432     1    1224444  49999999872 22    334567


Q ss_pred             hcCCCCCEEEEcCCCC
Q 027577          116 AKMKKGVLIVNNARGA  131 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~  131 (221)
                      ..++++..++.++-..
T Consensus        77 ~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHEEEEEEEEEESSTS
T ss_pred             HHhccCCEEEEEEccC
Confidence            7899999999887543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK12861 malic enzyme; Reviewed

Probab=95.70  E-value=0.31  Score=47.57  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCC-----C----C---hhHHHhcCceecCCHHhhcCCCCE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----M----D---PQLEKETGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~-----~----~---~~~~~~~g~~~~~~l~ell~~aDv   95 (221)
                      +..|...||.|.|.|.-|..+++.+...|.   +++.+|+..     .    .   ...++..   ...+|.|+++.+|+
T Consensus       184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv  260 (764)
T PRK12861        184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV  260 (764)
T ss_pred             CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence            467889999999999999999999999998   689888543     1    1   1122221   23589999999997


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEEC
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~t  175 (221)
                      ++= +.    ..+++.++.++.|.+..+|.=.|.-..--..+.... ..|... .+.-       ..+.| =+..|+++-
T Consensus       261 liG-~S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~ai-vaTG-------rs~~p-nQ~NN~l~F  325 (764)
T PRK12861        261 FLG-LS----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA-TRDDVV-IATG-------RSDYP-NQVNNVLCF  325 (764)
T ss_pred             EEE-cC----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh-cCCCEE-EEeC-------CcCCC-Cccceeeec
Confidence            754 33    247899999999999999999987664211122222 334422 2221       11111 245689999


Q ss_pred             CCCCcCCHH-------HHHHHHHHHHHHHHHc
Q 027577          176 PHVSGTTID-------LRYAAGVKDMLDRYFK  200 (221)
Q Consensus       176 PH~a~~t~~-------~~~~~~~~~~~~~~~~  200 (221)
                      |-++-....       +.|.....+.|..+..
T Consensus       326 Pgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~  357 (764)
T PRK12861        326 PYIFRGALDVGATTITREMEIAAVHAIAGLAE  357 (764)
T ss_pred             chhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence            988543322       3443444455555443

>PLN02214 cinnamoyl-CoA reductase

Probab=95.69  E-value=0.032  Score=48.98  Aligned_cols=69  Identities=25%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh--HHHhc-----Cce-------ecCCHHhhcCCCCEEE
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKET-----GAK-------FEEDLDTMLPKCDIVV   97 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~~~~~-----g~~-------~~~~l~ell~~aDvVv   97 (221)
                      .+.+++|.|.|. |.||+.+++.|...|++|.+.+|+.....  .....     .+.       ...+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            467899999996 99999999999999999999887643211  01110     111       1134567788899988


Q ss_pred             EeCC
Q 027577           98 VNTP  101 (221)
Q Consensus        98 ~~~p  101 (221)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.67  E-value=0.033  Score=46.50  Aligned_cols=70  Identities=20%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--hcCcee-----c---CCHHhhc-CCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKF-----E---EDLDTML-PKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~-----~---~~l~ell-~~aDvVv~~~  100 (221)
                      .+.+++|.|+| .|.+|+.+++.|...|++|++..|+........  ..++..     .   .++.+.+ ..+|+|+.+.
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~   93 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT   93 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence            46789999999 599999999999999999998887643221111  112221     1   1233445 5799999876


Q ss_pred             CC
Q 027577          101 PL  102 (221)
Q Consensus       101 p~  102 (221)
                      +.
T Consensus        94 g~   95 (251)
T PLN00141         94 GF   95 (251)
T ss_pred             CC
Confidence            54

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.64  E-value=0.033  Score=50.84  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             EEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCCCCEEEEeCCC---Chhhh-----
Q 027577           39 VGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNTPL---TEKTR-----  107 (221)
Q Consensus        39 vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~-~l~ell~~aDvVv~~~p~---~~~t~-----  107 (221)
                      |-+||.|..|.+ +|+.|+..|++|.++|..... .+.+++.|+.... .-.+.++++|+|+..---   +|...     
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~   81 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER   81 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence            679999999998 999999999999999975422 2233445665432 123456789998876322   22211     


Q ss_pred             --hcch-HHHH-hcCC-CCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          108 --GMFD-KDRI-AKMK-KGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       108 --~~i~-~~~~-~~mk-~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                        .++. .+.+ ..++ ...+-|--+.|+--...-+...|+...
T Consensus        82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  125 (448)
T TIGR01082        82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG  125 (448)
T ss_pred             CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence              1222 2233 2232 234556667888877777777787644

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.63  E-value=0.046  Score=47.26  Aligned_cols=67  Identities=18%  Similarity=0.189  Sum_probs=46.0

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---h-c----Cc-------eecCCHHhhcCCCCEEEE
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---E-T----GA-------KFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~-~----g~-------~~~~~l~ell~~aDvVv~   98 (221)
                      .||++.|.| .|.||+.+++.|...|++|++.+++........   . .    .+       ....+++++++.+|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            378999999 599999999999999999988776543221110   0 0    11       112345677888999887


Q ss_pred             eCC
Q 027577           99 NTP  101 (221)
Q Consensus        99 ~~p  101 (221)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            764

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=95.63  E-value=0.089  Score=45.47  Aligned_cols=107  Identities=11%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+|.|.| .|.+|..+.+.+...|.+ |..+++..-..   .-.|++.+.+++++-+.  .|+.++++|. +.+...+.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~---~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~   81 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF   81 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcc---eecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH
Confidence            56899999 699999999999998888 33345431011   23477778899998876  7999999992 22333332


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       +..+.=-+.++++..+-++ -++++|.+..++..++
T Consensus        82 -e~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir  116 (286)
T TIGR01019        82 -EAIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTR  116 (286)
T ss_pred             -HHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence             2222111234444433333 3567888888887766

ATP citrate lyases appear to form an outgroup.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.62  E-value=0.03  Score=50.47  Aligned_cols=84  Identities=18%  Similarity=0.178  Sum_probs=55.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-------------------hH----HHhcC----cee-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QL----EKETG----AKF-   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-------------------~~----~~~~g----~~~-   82 (221)
                      ..|.+.+|.|||+|.+|..+|+.|...|. ++.++|......                   +.    ..+.+    +.. 
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            46889999999999999999999999887 477887542110                   00    01111    111 


Q ss_pred             ---c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        83 ---~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                         .  .+..++++++|+|+.|+ .+..++..+++....
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~  155 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVL  155 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence               1  22356788899888765 456677777665544

>PLN02427 UDP-apiose/xylose synthase

Probab=95.62  E-value=0.033  Score=49.63  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             cccCCCCCEEEEEc-cCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhc-------Ccee-------cCCHHhhcCCC
Q 027577           30 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKET-------GAKF-------EEDLDTMLPKC   93 (221)
Q Consensus        30 ~~~~l~g~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~l~ell~~a   93 (221)
                      .+..+..|||.|.| .|.||+.+++.|... |++|++++++..........       +++.       ..+++++++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            35567788999999 599999999999887 58999999754222111111       1211       12356677889


Q ss_pred             CEEEEeC
Q 027577           94 DIVVVNT  100 (221)
Q Consensus        94 DvVv~~~  100 (221)
                      |+|+-+.
T Consensus        88 d~ViHlA   94 (386)
T PLN02427         88 DLTINLA   94 (386)
T ss_pred             CEEEEcc
Confidence            9887655

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.60  E-value=0.033  Score=48.93  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             ccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hh----cCcee-------cCCHHhhcCCCCEEE
Q 027577           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KE----TGAKF-------EEDLDTMLPKCDIVV   97 (221)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~----~g~~~-------~~~l~ell~~aDvVv   97 (221)
                      +++-++++|.|.| .|.||+.+++.|...|++|++.+++....... ..    .++..       ...+++++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5678899999999 69999999999999999999887754322111 11    01211       123456677889887


Q ss_pred             EeCC
Q 027577           98 VNTP  101 (221)
Q Consensus        98 ~~~p  101 (221)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6653

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.60  E-value=0.027  Score=49.47  Aligned_cols=37  Identities=30%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++|+|.|.| .|.||+.+++.|...|.+|+++|+..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46789999999 59999999999999999999999753

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.60  E-value=0.042  Score=48.74  Aligned_cols=87  Identities=17%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHcc-CCCe---EEEEcCC-C--CChhHH-HhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKP-FNCN---LLYHDRV-K--MDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~-~G~~---V~~~d~~-~--~~~~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .+.+|||||. |.+|+.+.+.|.. -.+.   +..+... .  ...... .+.-+... +.++ ++++|++++++|.. .
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~-~~~~Divf~a~~~~-~   80 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS-FEGVDIAFFSAGGE-V   80 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-CHHH-hcCCCEEEECCChH-H
Confidence            3579999995 9999999999984 4555   4444322 1  111110 01112222 3344 47899999999832 2


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ...+ ...   ..+.|+.+||.|
T Consensus        81 s~~~-~~~---~~~~G~~VID~S   99 (347)
T PRK06728         81 SRQF-VNQ---AVSSGAIVIDNT   99 (347)
T ss_pred             HHHH-HHH---HHHCCCEEEECc
Confidence            2222 111   235688899888

>PRK06182 short chain dehydrogenase; Validated

Probab=95.59  E-value=0.028  Score=47.35  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee----cCC---HHhhcC-------CCCEEEEe
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EED---LDTMLP-------KCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~---l~ell~-------~aDvVv~~   99 (221)
                      .++++.|.|. |.||+.+++.|...|++|++.+|+....+.....++..    +.+   ++++++       ..|+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999995 89999999999999999999988653322222222221    122   233333       67999887


Q ss_pred             CC
Q 027577          100 TP  101 (221)
Q Consensus       100 ~p  101 (221)
                      ..
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            64

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.59  E-value=0.047  Score=46.92  Aligned_cols=88  Identities=23%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|.+|.|.| .|.+|..+++.++.+|++|++.+++....+.++++|+..+     .++.+.+     ...|+|+-++.. 
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~-  221 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG-  221 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence            588999999 6999999999999999999888876655566666665321     1221111     235777665541 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +     .....+..++++..++.++
T Consensus       222 ~-----~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         222 E-----FSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             H-----HHHHHHHhhccCCEEEEEc
Confidence            1     1244566677777777764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.58  E-value=0.03  Score=38.42  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.2

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      +|.|||.|.+|-.+|..++.+|.+|.++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            588999999999999999999999999988653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.54  E-value=0.067  Score=47.10  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l----------~ell~-~aDvVv~~~p~  102 (221)
                      .|.+++|+|+|.+|-+..+.++..|.. |++.|.++.+.+.++++|...+-+.          .++-. .+|+.+-++-.
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~  264 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN  264 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence            589999999999999999999999985 9999999888888999987643222          22333 58888887763


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+     .-++.++...++...|-++
T Consensus       265 ~~-----~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         265 VE-----VMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             HH-----HHHHHHHHHhcCCeEEEEe
Confidence            32     2234455555554444444

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.52  E-value=0.11  Score=45.00  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=69.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+|.|.|. |.+|+.+.+.|..+|++ ++.+++..-..   .-.|+..+.+++++-+.  .|+.++++|. +.+...+.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~---~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~   83 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGT---TVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL   83 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCC---eEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH
Confidence            568999995 99999999999998886 44556641011   13477778899998887  8999999992 22333332


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a  150 (221)
                       +..+.=-+.++++..+- ..-+++.|.+..+++.++-.
T Consensus        84 -e~~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvl  120 (291)
T PRK05678         84 -EAIDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLI  120 (291)
T ss_pred             -HHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEE
Confidence             23221112334444332 33334488888888877733

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.51  E-value=0.063  Score=47.42  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             CC-CCCEEEEEccC-------HHHHHHHHHHccCCCeEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCC
Q 027577           33 DL-EGKTVGTVGCG-------RIGKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPK   92 (221)
Q Consensus        33 ~l-~g~~vgIIG~G-------~iG~~iA~~l~~~G~~V~~~d~-~~~--~~~~-------~~~~g--~~~~~~l~ell~~   92 (221)
                      .+ .|+||+|++.|       ++.++++..+..+|++|.+..| ...  ..+.       +...|  +....++++++++
T Consensus       165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~  244 (335)
T PRK04523        165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG  244 (335)
T ss_pred             CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence            36 79999876543       7899999999999999999988 432  2111       12334  4456899999999


Q ss_pred             CCEEEEeC
Q 027577           93 CDIVVVNT  100 (221)
Q Consensus        93 aDvVv~~~  100 (221)
                      +|+|..-.
T Consensus       245 aDvvy~~~  252 (335)
T PRK04523        245 ADVVYAKS  252 (335)
T ss_pred             CCEEEece
Confidence            99998754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.51  E-value=0.065  Score=49.30  Aligned_cols=70  Identities=26%  Similarity=0.410  Sum_probs=54.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC---------------------hhHHHhcCcee--------
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKF--------   82 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~--------   82 (221)
                      ....|++|+|||.|.-|.+.|..|...|+.|++|++....                     .+.+...|++.        
T Consensus       119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~  198 (457)
T COG0493         119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR  198 (457)
T ss_pred             CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence            3567899999999999999999999999999999876532                     12233345431        


Q ss_pred             cCCHHhhcCCCCEEEEeCC
Q 027577           83 EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        83 ~~~l~ell~~aDvVv~~~p  101 (221)
                      --++++++++.|.|++++.
T Consensus       199 ~it~~~L~~e~Dav~l~~G  217 (457)
T COG0493         199 DITLEELLKEYDAVFLATG  217 (457)
T ss_pred             cCCHHHHHHhhCEEEEecc
Confidence            2478999999999999875

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.50  E-value=0.061  Score=46.58  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCC-----HHhhc---CCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-----LDTML---PKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-----l~ell---~~aDvVv~~~p~~~~  105 (221)
                      .|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+.+.+.+...+-+     +.++.   ...|+++-+..... 
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~-  243 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA-  243 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence            78999999999999999999999998 7888887654444545555422111     11222   22678777654211 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          ...+.+..|+++..+|+++.
T Consensus       244 ----~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         244 ----ALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             ----HHHHHHHHHhcCCEEEEEec
Confidence                12345677788888887753

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.027  Score=48.37  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ...+.++++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45788999999995 9999999999999999999999864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.47  E-value=0.021  Score=50.86  Aligned_cols=66  Identities=20%  Similarity=0.123  Sum_probs=44.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~  100 (221)
                      .+|+|.|.|. |.||+.+++.|...|++|+++++..............       ...++..+++++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            4789999996 9999999999999999999998743211000000111       1122344567899888665

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=95.46  E-value=0.078  Score=45.69  Aligned_cols=88  Identities=20%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CCCCEEEEeCCCCh
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVv~~~p~~~  104 (221)
                      |.+|.|+| .|.+|+.+++.++..| .+|++.+.+....+.+.+.|+..+    .+..+.+     +..|+++-+++.. 
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~-  228 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTD-  228 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcH-
Confidence            78999999 5999999999999999 999998876655555555554211    1111111     2467776665421 


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                          ......+..++++..+++++
T Consensus       229 ----~~~~~~~~~l~~~g~~v~~g  248 (336)
T cd08252         229 ----QHWDAMAELIAPQGHICLIV  248 (336)
T ss_pred             ----HHHHHHHHHhcCCCEEEEec
Confidence                12234466677777777764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		1e-111
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-111
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		5e-57
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-56
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		3e-55
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-55
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-55
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-52
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		2e-52
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		3e-24
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		6e-24
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		6e-24
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		5e-23
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-22
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-22
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		4e-22
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		4e-22
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		4e-21
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		8e-20
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-19
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		2e-19
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		5e-19
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-16
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-16
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-16
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		3e-16
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		6e-16
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		8e-16
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		9e-16
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		9e-16
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		9e-16
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-15
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-15
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		2e-15
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		8e-15
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		9e-15
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		6e-14
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		8e-14
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		2e-13
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-13
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		8e-13
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		8e-13
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-12
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-12
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-12
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		2e-12
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		5e-12
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		4e-11
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		5e-11
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		8e-11
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-09
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		2e-09
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-08
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		1e-08
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		8e-07
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-06

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 135 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 194
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 195 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 254
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 255 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 314
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 315 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 357

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score =  217 bits (552), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 151/224 (67%), Gaps = 9/224 (4%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 130 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 189
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 190 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 249
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 250 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309
Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
           TPH SGTT+D   RYA G K++L+ +F G+ D+  Q+ I+  GE
Sbjct: 310 TPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGE 353

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 150/224 (66%), Gaps = 9/224 (4%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 215
           TPH SGTT+D   RYA G  ++L+ +F G+ D+  Q+ I+  GE
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGE 352

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           TT+    RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILEXFFEGRPIRDEYLIVQGGALA 375

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           TT+    RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTI--DLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           TT+    RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct: 337 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 2/219 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 156 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           T++    RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 336 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 374

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 2/219 (0%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 157 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 217
           T++    RYAAG +++L+ YF+G     +  IV+ G LA
Sbjct: 337 TSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 375

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW      +    R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168
Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R +    +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226
Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285
Query: 179 SGTTIDLRYAAGVK--DMLDRYFKGE 202
           +G  ++ +   G +  + L +  +GE
Sbjct: 286 AGLALEAQEDVGFRAVENLLKVLRGE 311

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG--VKDMLDRYFKGEDFP 205
                DV+  +P   D P   +    +TPH+  +T + +  AG  V + +     GE  P
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG--VKDMLDRYFKGEDFP 205
                DV+  +P   D P   +    +TPH+  +T + +  AG  V + +     GE  P
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  MKK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDLR 186
              R
Sbjct: 294 FGAR 297

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 10/166 (6%)
Query: 42  VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101
           VG GRIG+ + +R   F   ++YH R        K     F   L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           LT +T  + +++R+  MK+G +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 162 KDHPWRYMPNQAMTPHV--SGTTIDLRYAAGVKDMLDRYFKGEDFP 205
             HP   +PN  +TPH+  +G T   R A    + L    +G + P
Sbjct: 262 PGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +LEGKT+G +G GRIG  + +       N+L +D    + +  KE   KF  DL+T+L +
Sbjct: 139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKE 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D+V ++ PL E T  + +++R+  MKK  +++N +RG ++DT A+V A   G IAG   
Sbjct: 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGL 256
Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
           DV+  +P PKDHP     N  +TPH+  +T++ +  AGV+
Sbjct: 257 DVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 17  VISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           V SG W   G        L G+ +G  G GRIG+ +  R + F   + YH+R ++   LE
Sbjct: 153 VRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
           +  GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G +++N +RG +++ 
Sbjct: 213 E--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270
Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAG 190
            A+++A  S H+     DV+  +PA  D  +R + N  +TPH+   T + R A G
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDNIFLTPHIGSATHETRDAXG 324

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 108/184 (58%), Gaps = 8/184 (4%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+   KK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDLR 186
              R
Sbjct: 294 FGAR 297

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308
Query: 183 IDLRYAAG 190
            + +   G
Sbjct: 309 KEAQSRCG 316

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
           Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  +  
Sbjct: 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 205
Query: 89  -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +  + D +VV   LT  T G+ +KD   KMK+  + +N +RG +++   +  A +SG I
Sbjct: 206 ELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 265
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLRYAAGV--KDMLDRYFKGEDFP 205
           A    DV +P+P P +HP   + N  + PH+   T   R    +   + L    +GE  P
Sbjct: 266 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325
Query: 206 VQ 207
            +
Sbjct: 326 SE 327

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+ KT+G  G G IG+ L +R + F+ ++ Y D  +     E    A F + LD++L   
Sbjct: 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVS 203
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
               +N P T +TR  F+K  I  + +G ++VN ARG ++D + VV A  +G +A    D
Sbjct: 204 QFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFD 263
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLR--YAAGVKDMLDRYFKGED 203
           V+  +P   +  +  +PN  + PH+       R   A    D++D  F G D
Sbjct: 264 VFAGEPNINEGYYD-LPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W    +  R  ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D      +L+     K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYD---TSDKLQYGN-VKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----PWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298
Query: 179 SGTT 182
            G+T
Sbjct: 299 GGST 302

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT-- 88
           Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  +  
Sbjct: 149 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTP 203
Query: 89  -MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +  + D +VV   LT  T G+ +KD   K K+  + +N +RG +++   +  A +SG I
Sbjct: 204 ELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKI 263
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           A    DV +P+P P +HP   + N  + PH+   T
Sbjct: 264 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 298

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 16/163 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTT 182
           DV+  +    +  W                PN  +TPH +  T
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
           I G + DV   +P +    P +  PN   TPH +      +I++R  A 
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
           I G + DV   +P +    P +  PN   TPH +      +I++R  A 
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 159 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTL 217
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 218 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 277
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
           I G + DV   +P +    P +  PN   TPH +      +I++R  A 
Sbjct: 278 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 326

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR 167
           DV+  +    +  W 
Sbjct: 260 DVYEGEVGIFNEDWE 274

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V+  +       P   D      PN   TPH+      +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V+  +       P   D      PN   TPH+      +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T + +   G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 307

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T + +   G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 307

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 136 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 192
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 193 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALC 249
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDLRYAAGVK 192
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T + +   G++
Sbjct: 250 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLE 306

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V+  +       P   D      PN   TPH+      +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR G+ +  R K F  +++++D    D  +E+  G +    L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L + D V ++  L E    + +   I +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAGVK 192
           I G + DV   +P +    P +  PN   TPH +      ++++R AA  +
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATE 312

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V+  +       P   D      PN   TPH+      +R
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 301

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G  R+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS----GTTIDLRYAAG 190
           I G + DV   +P +    P +  PN   TPH +      +I++R  A 
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAA 329

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++ 
Sbjct: 139 LAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVR 198
Query: 64  YHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           Y +R  +     +  ++      D        D++ V    +  T+ + D   +  +   
Sbjct: 199 YWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDASLLQALGPE 251
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D  A+++A  SG IAG   DV+  +PA +   +   PN  + PH    
Sbjct: 252 GIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQGSA 310
Query: 182 TIDLRYAAG--VKDMLDRYFKGEDFP 205
           T++ R A G  V   L  +F GE  P
Sbjct: 311 TVETRXAXGKLVLANLAAHFAGEKAP 336

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 16/163 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ ++ ++ F   ++ +D  K +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M +   IA+MK GV+IVN +RG ++DT AV+    SG I G+  
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 153 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTT 182
           D       V+N     K+ P + +      PN  +TPH +  T
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYT 302

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG     RL+ +   L YH    +D Q E+  G + +     +    
Sbjct: 144 LDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLR-QVACSELFASS 202
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 203 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 262
Query: 154 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V+  +       P   D      PN   TPH+      +R
Sbjct: 263 VFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVR 302

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 22  WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 81
           W    ++   Y+L   TVG +G G IG  + +        ++ +D V  +P+ E      
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
              D DT+L + DIV ++TPL   T  M  + ++ +MKK   ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 142 CSSGHIAGYSGDVWNPQPA------------PKDH-PWRYMPNQAMTPH 177
              G IAG   D    + +            P+D+     MPN  +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG VG GRIG++  Q        ++  D  ++    +  T    +  LD +L K DI+ 
Sbjct: 148 TVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIIT 203
Query: 98  VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
           ++ P  ++   +  +D + KMK G ++VN ARG ++DT+AV++A  SG + GY  DV + 
Sbjct: 204 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 263
Query: 158 QPA 160
           + +
Sbjct: 264 EAS 266

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L     
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNA 191
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            + +  L  +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ 
Sbjct: 192 TQVQH-LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALC 250
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDLRYAAGVK 192
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T + +   G++
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLE 307

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L      + +  L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 147 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVK 192
           +AG + DV+  +PA    P   P     N  +TPH+ G+T + +   G++
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLE 301

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 11/203 (5%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKG 121
            Y  R K     +  T   +   +  +    DI+VV  PLT +T  + +++ I  +  KG
Sbjct: 191 SYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           VLI N  RG  +D   +V A   G + G   DV+  +P   +  +  + N  + PHV   
Sbjct: 246 VLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVVLLPHVGSG 303
Query: 182 TIDLR--YAAGVKDMLDRYFKGE 202
           T++ R   A  V   L+ +F G+
Sbjct: 304 TVETRKVMADLVVGNLEAHFSGK 326

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   ++
Sbjct: 114 LYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI 172
Query: 64  YHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            +D   M     K     F+   L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 173 AYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 227
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP----------APKDHPWRY---M 169
           +++N AR  ++DTQA++    SG +AG   D +  +           + KD  W     M
Sbjct: 228 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 287
Query: 170 PNQAMTPHV---SGTTIDLRYAAGVKDMLDRYFKGE 202
           PN  ++PH+   + T +       ++ ++D   KGE
Sbjct: 288 PNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGE 323

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
           A +L   T+G +G GRIG  +      F   +L +D VK +    KE G  +   LD +L
Sbjct: 136 ARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELL 192
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            + D++ ++ P T++T    +++RI+  K GV ++N ARG ++DT A+  A   G  +G 
Sbjct: 193 KESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGL 252
Query: 151 SGDVWNPQ 158
             DV+  +
Sbjct: 253 GLDVFEDE 260

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+G+T+G  G G+IG+L+    + F  N+L   R +   +  +  G    E  D +  + 
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D++ V+  L ++TR +     + +MK   L VN +R  +++   +V A + G     + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPH---VSGTTIDLRYAAGVKDMLD 196
           V+  +P  + H    M N   TPH   V   + ++ +    +++LD
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILD 322

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 90
           Y  E  +VG  G G +G  + + L+ +   L    R +   P +E   G    E+L   L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ + + + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNY 209
             DV++ +P P++ P WR+ P  A TPH++  T        +   + +  KGE  PV   
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAEAIDYISRTITQLEKGE--PVTGQ 308
Query: 210 IVKA 213
           + +A
Sbjct: 309 VDRA 312

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           + G  +G VG G +GK L + L  F   +   D       LE E G +    L+ +L K 
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE-PASLEDVLTKS 231
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D + V   +T + +     +  +  ++G   +  +R  ++D  A+  A SSGHI   S D
Sbjct: 232 DFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-D 290
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           V+  +P P DHP R +     + H +G 
Sbjct: 291 VYPEEPLPLDHPVRSLKGFIRSAHRAGA 318

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 88
           L+G+T+  +G G IG+ +    K F   +L   R            A F++      L+ 
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 89  MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148
           ML + D++V   P T +T  +F   R    K G ++ N  RG  ++   ++ A  +G + 
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 183
               DV+  +P P D P    PN  +TPH S  + 
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +L GKT+G VG GRIG  +          +L +D + +  + EK         L+ +L  
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++  +++  + + D  +   MK  V+IVN +R   ++ +A++D    G +  Y+ 
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 153 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTT 182
           DV+  +P  ++     + ++   +T H+   T
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQT 288

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELVQ 169
Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 148 AGYSGDVWNPQP 159
                DVW  +P
Sbjct: 230 LSVVLDVWEGEP 241

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           + +V   PLT  T  +F  +   + K+  +++N  RG  +DT A++ A     ++  + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDLR 186
           V  P+P P DHP     +  +TPH+SG     R
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISGQIAHFR 285

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 30  RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
           R  DL  +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ +
Sbjct: 110 RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCD----PPRQAREPDGEFVS-LERL 164
Query: 90  LPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L + D++ ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      G
Sbjct: 165 LAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
                + DVW  +  P+  P         TPH++G +++
Sbjct: 225 ADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLE 261

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 56  KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           K F   ++ + R  +D  ++        E    +  + D V++  PLT+KTRG  +   +
Sbjct: 142 KAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLL 196
Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           A  +K + IVN AR  ++     +          Y  DVW  +P   +   R   N  ++
Sbjct: 197 ANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NAILS 253
Query: 176 PHV----SGTTIDLRYAAGVKDMLDRYFKGE 202
           PHV    SG   D+      +++ + +F+GE
Sbjct: 254 PHVAGGXSGEIXDIAIQLAFENVRN-FFEGE 283

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           ++G+ V  +G G IG  + + L      +    R        KE   +F   L+  L + 
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
              V   PL + TRG+     +A   +  + VN  R  ++D   V+          ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 154 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 180
           V W      KD  +  +PN   TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-113
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-108
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-102
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	6e-61
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	4e-59
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-58
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	3e-58
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-58
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-57
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	5e-56
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	9e-56
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	3e-55
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	9e-55
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-54
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	4e-54
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-51
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	3e-51
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	3e-50
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	9e-50
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-49
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-48
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	2e-48
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	3e-48
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	3e-48
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	6e-48
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	3e-47
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	4e-47
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-46
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-45
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-45
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	8e-43
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	2e-42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	4e-18
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	2e-04

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  327 bits (841), Expect = e-113
 Identities = 183/223 (82%), Positives = 204/223 (91%), Gaps = 2/223 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 221
           TTID  LRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 309 TTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  315 bits (808), Expect = e-108
 Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 2/221 (0%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335

Query: 181 TTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ 219
           TT+    RYAAG +++L+ +F+G     +  IV+ G LA  
Sbjct: 336 TTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAGT 376

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  298 bits (764), Expect = e-102
 Identities = 108/228 (47%), Positives = 150/228 (65%), Gaps = 9/228 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188

Query: 61  N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N      AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ 219
           TPH SGTT+D   RYA G  ++L+ +F G+ D+  Q+ I+  GE   +
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK 356

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  192 bits (491), Expect = 6e-61
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 10/212 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            + L R+       V SG++      +    L+  TVG +G G IG  +  RL+ +   L
Sbjct: 112 AVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            YH+   +D Q E+  G +       +    D +++  PL   T  + + + +A ++ G 
Sbjct: 172 QYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGA 230

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------WNPQPAPKDHPWRYMPNQAMT 175
           L+VN  RG+++D  AV+ A   G + GY+ DV          +P   D      PN   T
Sbjct: 231 LLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFT 290

Query: 176 PHVSGTTIDLRYAAGVK--DMLDRYFKGEDFP 205
           PH+      +R          + +   GE   
Sbjct: 291 PHIGSAVRAVRLEIERCAAQNILQALAGERPI 322

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  187 bits (478), Expect = 4e-59
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 112 LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 171

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 172 IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+   
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 290

Query: 182 TIDLRYAAGVK--DMLDRYFKGEDFP 205
               R     +  D++D  F G D  
Sbjct: 291 ATQAREDMAHQANDLIDALFGGADMS 316

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  185 bits (471), Expect = 3e-58
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 16/211 (7%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 94  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 150

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R        KE   +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 151 RGFSRT------PKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 204

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           + VN  R  ++D   V+          ++ DV W      KD  +  +PN   TP V+G 
Sbjct: 205 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264

Query: 182 TIDLRY----AAGVKDMLDRYFKGEDFPVQN 208
             + R            L  Y  G     +N
Sbjct: 265 YGNERVWRQMVMEAVRNLITYATGG--RPRN 293

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  186 bits (474), Expect = 3e-58
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 9/212 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR-LK 56
           IL + R          +G+          +   A++  G  +G VG G I K + ++ + 
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
                L+Y+D    D + EK  GA+  + L+ +  + D V V+ P  + T  + D+   A
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
            MK G  IVN ARG ++   A++ A  SG +     DV   +P         M +  +T 
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVTLTT 303

Query: 177 HVSGTTIDLRYAAGVKDM--LDRYFKGEDFPV 206
           H+ G  I+  +      M  +DR+       +
Sbjct: 304 HIGGVAIETFHEFERLTMTNIDRFLLQGKPLL 335

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  185 bits (471), Expect = 7e-58
 Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 10/210 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRA-----YDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           FN  +LY+ R     ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  
Sbjct: 172 FNMRILYYSR-TRKEEVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MKK  +++N ARG ++DT A+V A   G IAG   DV+  +P   +     + N  +TPH
Sbjct: 230 MKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPH 288

Query: 178 VSGTTIDLRYAAGVK--DMLDRYFKGEDFP 205
           +   +   R          L  + +GE  P
Sbjct: 289 IGSASFGAREGMAELVAKNLIAFKRGEIPP 318

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  182 bits (463), Expect = 3e-57
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 15/209 (7%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +N L  +  + +G +           L GK +G +G G IG+ +    K F   +
Sbjct: 93  LLAHAKNILENNELMKAGIFR----QSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRV 148

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + + R      +++      E     +  + D V++  PLT+KTRGM +   +A  +K +
Sbjct: 149 IAYTRS----SVDQNVDVISE-SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            IVN AR  ++    ++          Y  DVW  +P   +     + N  ++PHV+G  
Sbjct: 204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGM 260

Query: 183 IDLRYAAGVK---DMLDRYFKGEDFPVQN 208
                   ++   + +  +F+GE     +
Sbjct: 261 SGEIMDIAIQLAFENVRNFFEGEGHHHHH 289

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  180 bits (458), Expect = 5e-56
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R       +V +G W     +    Y L   TVG +G GRIG+ + +RLKPF   
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
              +   +  P+   E  A+F      +  + D +VV   LT  T G+ +KD   KMK+ 
Sbjct: 181 RFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKET 239

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +N +RG +++   +  A +SG IA    DV +P+P P +HP   + N  + PH+   
Sbjct: 240 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 299

Query: 182 TIDLRYAAGVK--DMLDRYFKGEDFP 205
           T   R    +   + L    +GE  P
Sbjct: 300 THRTRNTMSLLAANNLLAGLRGEPMP 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  179 bits (457), Expect = 9e-56
 Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 9/209 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWN----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW     +     R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R      +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSR-HRKVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285

Query: 179 SGTTIDLRYAAGVK--DMLDRYFKGEDFP 205
           +G  ++ +   G +  + L +  +GE   
Sbjct: 286 AGLALEAQEDVGFRAVENLLKVLRGEVPE 314

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  178 bits (454), Expect = 3e-55
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 9/208 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 130 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 189

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 190 FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 248

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P +    P +  PN   TP
Sbjct: 249 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308

Query: 177 HVSGTTIDLRYAAGVK--DMLDRYFKGE 202
           H +  +         +    + R   G 
Sbjct: 309 HAAWYSEQASIEMREEAAREIRRAITGR 336

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  176 bits (449), Expect = 9e-55
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 7/208 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L +VR +                +      L G+ +   G G+IG+ L  +      ++
Sbjct: 106 MLSVVRGYHAAWLNQRGARQWALPMTTS--TLTGQQLLIYGTGQIGQSLAAKASALGMHV 163

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  +     P         F       L   + +V   PLT  T  +F  +   + K+  
Sbjct: 164 IGVNT-TGHPADHFHETVAFT-ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +DT A++ A     ++  + DV  P+P P DHP     +  +TPH+SG  
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281

Query: 183 IDLRYAAG--VKDMLDRYFKGEDFPVQN 208
              R            ++ K     V+N
Sbjct: 282 AHFRATVFPIFAANFAQFVKDGT-LVRN 308

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  176 bits (448), Expect = 1e-54
 Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +  + R       ++  G W          +LEGKT+G +G GRIG  + +       N+
Sbjct: 111 MFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNI 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    + +  KE   KF  DL+T+L + D+V ++ PL E T  + +++R+  MKK  
Sbjct: 169 LLYDPY-PNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N +RG ++DT A+V A   G IAG   DV+  +P PKDHP     N  +TPH+  +T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286

Query: 183 IDLRYAAGV---KDMLDRYFKG 201
           ++ +  AGV   + ++    KG
Sbjct: 287 VEAQERAGVEVAEKVVK-ILKG 307

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  174 bits (444), Expect = 4e-54
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 11/206 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L + R  + G      G W           DL+G T+G VG GRIG+ + +R   F   
Sbjct: 110 LLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMR 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH R        K     F   L+ +L + D+V ++TPLT +T  + +++R+  MK+G
Sbjct: 170 VVYHART------PKPLPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P  HP   +PN  +TPH+   
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281

Query: 182 TIDLRYAAGVK--DMLDRYFKGEDFP 205
               R        + L    +G + P
Sbjct: 282 GRTTRERMAEVAVENLLAVLEGREPP 307

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  169 bits (430), Expect = 1e-51
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R        V SG W            L G+ +G  G GRIG+ +  R + F   
Sbjct: 139 VLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLA 198

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + YH+R ++      E GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G
Sbjct: 199 IHYHNRTRLSH--ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            +++N +RG +++  A+++A  S H+     DV+  +PA  D  +R + N  +TPH+   
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSA 315

Query: 182 TIDLRYAAGVK--DMLDRYFKGE 202
           T + R A G      ++   + +
Sbjct: 316 THETRDAMGWLLIQGIEALNQSD 338

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  168 bits (428), Expect = 3e-51
 Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 11/210 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGKLLLQR 54
           ++   R        +  G W  +G+              L+G+T+G  G G+IG+L+   
Sbjct: 119 VMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGY 178

Query: 55  LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114
            + F  N+L   R +   +  +  G    E  D +  + D++ V+  L ++TR +     
Sbjct: 179 GRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237

Query: 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174
           + +MK   L VN +R  +++   +V A + G     + DV+  +P  + H    M N   
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297

Query: 175 TPHVSGTTID--LRYAAGVKDMLDRYFKGE 202
           TPH+     +    Y       +    +G 
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNILDILQGN 327

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  165 bits (420), Expect = 3e-50
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G +    L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308

Query: 183 ID--LRYAAGVKDMLDRYFKGEDFPVQN 208
            +   R    +        KG+   +  
Sbjct: 309 KEAQSRCGEEIAVQFVDMVKGK--SLTG 334

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  163 bits (415), Expect = 9e-50
 Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 10/204 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++   R          SG +          +L GKT+G VG GRIG  +          +
Sbjct: 113 MIAAARKMYTSMALAKSGIFK----KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D +    +  ++  AK    L+ +L   D++ ++  +++  + + D  +   MK  V
Sbjct: 169 LAYDIL-DIREKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH--PWRYMPNQAMTPHVSG 180
           +IVN +R   ++ +A++D    G +  Y+ DV+  +P  ++            +T H+  
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286

Query: 181 TTID--LRYAAGVKDMLDRYFKGE 202
            T +   R A      L    K  
Sbjct: 287 QTKEAQKRVAEMTTQNLLNAMKEL 310

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  163 bits (414), Expect = 3e-49
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 8/205 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV 197

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y +R  +             +    +    D++ V    +  T+ + D   +  +    
Sbjct: 198 RYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           ++VN ARG ++D  A+++A  SG IAG   DV+  +PA     +   PN  + PH    T
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSAT 311

Query: 183 IDLRYAAG--VKDMLDRYFKGEDFP 205
           ++ R A G  V   L  +F GE  P
Sbjct: 312 VETRMAMGKLVLANLAAHFAGEKAP 336

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  161 bits (409), Expect = 1e-48
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 18/189 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
              ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F   +
Sbjct: 115 AARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  + +P+LEK+ G   +  LD +  + D++ ++ P       M + + IAKMK+ V
Sbjct: 173 ITYDIFR-NPELEKK-GYYVD-SLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDV 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWRYM 169
           +IVN +RG ++DT AV+    SG I GY+ DV+                P  +       
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289

Query: 170 PNQAMTPHV 178
           PN  +TP  
Sbjct: 290 PNVLVTPKT 298

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  160 bits (408), Expect = 2e-48
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 9/205 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y  R K        T   +   +  +    DI+VV  PLT +T  + +++ I  +    
Sbjct: 191 SYFSRSKKP-----NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +D   +V A   G + G   DV+  +P         + N  + PHV   T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGT 304

Query: 183 IDLRYAAG--VKDMLDRYFKGEDFP 205
           ++ R      V   L+ +F G+   
Sbjct: 305 VETRKVMADLVVGNLEAHFSGKPLL 329

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  160 bits (406), Expect = 3e-48
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
              L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F  
Sbjct: 111 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA 169

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D     P         +   L+ +  + D++ ++ P  E+   + ++     MK 
Sbjct: 170 KVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWR 167
           G +++N AR  ++DTQA++    SG +AG   D +                  P      
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285

Query: 168 YMPNQAMTPHV 178
            MPN  ++PH+
Sbjct: 286 GMPNVVLSPHI 296

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  164 bits (416), Expect = 6e-48
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 111 LLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +    LD +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 169 VAYDPY-VSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+  +T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGAST 285

Query: 183 IDLRYAAGV---KDMLDRYFKGEDFP 205
            + +  AG    + +      GE  P
Sbjct: 286 AEAQDRAGTDVAESVRL-ALAGEFVP 310

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  157 bits (399), Expect = 3e-47
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 19/190 (10%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            ++L+R+      +     + V      + ++   TVG VG GRIG++  Q        +
Sbjct: 114 AMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  D          E        LD +L K DI+ ++ P  ++   +  +D + KMK G 
Sbjct: 173 IGEDVF---EIKGIEDYCTQV-SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGA 228

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWRYM-- 169
           ++VN ARG ++DT+AV++A  SG + GY  DV              Q        + +  
Sbjct: 229 ILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDL 288

Query: 170 -PNQAMTPHV 178
            P   +TPH+
Sbjct: 289 YPRVLITPHL 298

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  159 bits (404), Expect = 4e-47
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 114 LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D      +L      + +  L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 172 YFYDIE---NKLPLGNATQVQ-HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287

Query: 179 SGTT 182
            G+T
Sbjct: 288 GGST 291

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  157 bits (399), Expect = 2e-46
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 12/206 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W     A  + ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWE--KTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D              K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYDTSDKLQYG----NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298

Query: 179 SGTTIDLRYAAG--VKDMLDRYFKGE 202
            G+T + +   G  V   L  Y    
Sbjct: 299 GGSTEEAQERIGTEVTRKLVEYSDVG 324

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  153 bits (388), Expect = 1e-45
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 8/206 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R       Q     W     ++    L+G+T+  +G G IG+ +    K F  
Sbjct: 109 GHLLSLMRQLPLYREQQKQRLWQ----SHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM 164

Query: 61  NLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
            +L   R  +     ++         L+ ML + D++V   P T +T  +F   R    K
Sbjct: 165 KVLGVSRSGRERAGFDQVYQ---LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCK 221

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
            G ++ N  RG  ++   ++ A  +G +     DV+  +P P D P    PN  +TPH S
Sbjct: 222 PGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNS 281

Query: 180 GTTIDLRYAAGVKDMLDRYFKGEDFP 205
             +     A        R+  G+   
Sbjct: 282 AYSFPDDVAQIFVRNYIRFIDGQPLD 307

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  152 bits (386), Expect = 2e-45
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 8/204 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R F           W         Y  E  +VG +G G +G  + + L+ +   L
Sbjct: 110 VLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPL 165

Query: 63  LYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
               R  K  P +E   G    E+L   L +  +++   P T +T G+ + + + ++  G
Sbjct: 166 RCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
             ++N ARG  +    ++ A  SG + G   DV++ +P P++ P    P  AMTPH++  
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAV 282

Query: 182 TIDLRYAAGVKDMLDRYFKGEDFP 205
           T        +   + +  KGE   
Sbjct: 283 TRPAEAIDYISRTITQLEKGEPVT 306

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  147 bits (373), Expect = 8e-43
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 13/177 (7%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQ 169

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGE 202
                DVW  +P   +       +   T H++G T++   R    V +    +   E
Sbjct: 230 LSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  146 bits (371), Expect = 2e-42
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 29  YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT 88
            R  DL  +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ 
Sbjct: 109 VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLER 163

Query: 89  MLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144
           +L + D++ ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      
Sbjct: 164 LLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG 223

Query: 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
           G     + DVW  +P     P         TPH++G +++
Sbjct: 224 GADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLE 261

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 80.0 bits (197), Expect = 4e-18
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 5   ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ R+ +  ++ + + E  +  +A +  D  + G  V  +G GR+G  + ++       +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
               R         E G +          L   D+ +   P       +   + +A+M  
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236

Query: 121 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD 163
              +++ A          A      +  + G  G V     APK 
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV-----APKT 276

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 88
            G  G G  G +L+         + +H   +     DP  +       E G      L  
Sbjct: 5   FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58

Query: 89  ML--PKCDIVVVNTP 101
           M+   + D V + +P
Sbjct: 59  MMQHVQMDAVYIASP 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.97
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.97
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.86
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.79
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.67
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.66
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.66
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.65
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.63
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.6
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.59
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.59
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.59
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.59
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.58
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.58
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.57
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.55
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.54
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.53
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.52
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.51
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.5
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.48
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.47
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.43
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.42
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.42
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.4
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.4
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.39
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.39
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.39
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.38
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.37
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.36
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.36
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.35
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.34
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.33
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.33
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.33
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.33
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.29
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.29
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.28
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.27
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.26
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.23
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.23
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.87
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.22
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.22
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.19
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.19
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.17
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.17
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.16
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.15
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.13
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.13
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.12
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.12
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.12
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.11
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.1
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.09
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.08
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.07
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.05
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.05
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.05
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.05
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.99
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.98
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.96
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.96
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.95
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.95
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.95
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.94
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.94
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.93
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.93
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.87
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.86
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.85
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.84
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.82
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.82
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.78
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.75
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.75
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.73
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.72
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.72
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.71
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.71
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.69
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.69
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.69
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.69
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.68
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.66
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.65
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.61
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.6
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.59
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.57
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.56
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.55
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.54
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.54
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.53
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.52
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.52
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.49
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.49
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.48
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.46
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.45
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.42
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.42
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.41
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.41
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.4
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.39
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.39
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.39
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.38
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.38
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.38
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.36
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.35
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.35
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.33
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.33
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.33
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.31
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.31
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.29
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.29
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.28
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.27
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.26
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.26
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.25
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.25
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.24
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.24
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.23
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.22
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.21
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.19
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.18
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.18
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.17
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.16
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.15
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.13
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.13
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.13
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.12
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.11
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.09
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.07
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.06
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.05
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.05
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	98.04
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.04
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.04
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.03
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.02
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.02
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.02
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.0
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.99
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.98
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.98
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.98
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.97
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.97
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.97
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.96
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.92
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.9
4had_A	350	Probable oxidoreductase protein; structural genomi	97.89
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.89
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.89
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.88
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.88
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.86
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.84
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.83
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.82
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.81
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.81
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.8
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.8
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.79
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.79
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.79
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.79
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.78
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.77
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.77
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.77
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.77
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.76
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.76
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.76
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.76
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.76
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.74
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.74
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.74
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.73
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.73
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.69
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.69
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.69
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.69
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.68
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.67
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.67
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.66
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.65
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.65
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.63
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.63
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.62
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.62
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.61
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.6
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.59
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.59
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.59
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.59
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.59
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.57
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.57
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.57
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.56
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.56
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.56
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.55
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.54
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	97.54
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.54
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.53
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.53
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.53
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.53
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.52
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.51
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.5
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.49
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.49
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.49
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.49
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.48
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	97.48
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.48
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.48
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.46
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.46
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.45
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.45
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.43
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.43
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.43
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.42
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.42
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.42
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.42
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.41
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.41
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.41
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.4
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.4
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.4
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.39
1lnq_A	336	MTHK channels, potassium channel related protein;	97.39
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.38
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.38
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.38
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.37
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.37
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.37
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.37
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.36
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.36
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.35
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	97.35
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.35
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.35
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.34
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.33
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.33
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	97.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.31
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.31
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.31
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	97.31
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.3
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.29
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.28
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.27
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.27
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.27
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.25
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.24
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.24
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.24
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.24
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.23
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.22
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.22
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.22
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.21
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.2
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.16
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.16
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.16
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.16
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.15
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.15
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.12
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.12
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.12
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.12
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.11
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.1
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.1
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.09
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	97.09
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.08
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.08
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.08
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.07
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.07
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.07
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	97.06
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.06
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.05
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.05
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.04
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.04
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	97.04
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	97.02
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.02
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.01
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.0
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.0
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	97.0
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.99
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.98
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	96.97
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.97
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.96
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.95
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.95
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.94
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.94
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.92
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.9
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.9
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.89
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.89
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.88
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.88
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.84
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.83
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.82
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.82
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.81
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.81
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.81
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.81
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.81
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.79
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.79
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.79
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.79
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.78
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.78
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.76
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.76
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.76
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.76
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.76
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.75
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.75
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.75
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.75
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.75
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.74
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.74
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.74
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.74
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.73
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.72
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.71
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.71
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.71
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.7
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.69
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.68
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.67
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.67
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.67
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.66
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.66
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.65
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.65
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.64
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.62
2csu_A	457	457AA long hypothetical protein; structural genomi	96.61
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.6
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.59
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.59
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.58
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.57
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.57
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.57
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.56
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.56
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.54
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.54
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.53
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.52
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.5
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.48
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.48
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.46

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.1e-56  Score=394.03  Aligned_cols=221  Identities=83%  Similarity=1.393  Sum_probs=207.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|........+.+|.|+||||||+|.||+.+|+++++||++|++||+++...+.+.+.|+
T Consensus       129 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC
T ss_pred             HHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC
Confidence            57999999999999999999998543223467899999999999999999999999999999999998766777777788


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ..+.++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||++|||++||+
T Consensus       209 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  288 (351)
T 3jtm_A          209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA  288 (351)
T ss_dssp             EECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             eEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCC
Confidence            87789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR  221 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~~~  221 (221)
                      |.+||||++||+++|||+||+|.|  .++...+.+|+.+|++|+++.+.|+|+..++|+.+||
T Consensus       289 ~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~~~~~i~~~~~~~~~~~  351 (351)
T 3jtm_A          289 PKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR  351 (351)
T ss_dssp             CTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEECGGGC
T ss_pred             CCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEEecCCccccccC
Confidence            999999999999999999999999  6777889999999999998889999999999999998

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.3e-52  Score=365.72  Aligned_cols=205  Identities=28%  Similarity=0.498  Sum_probs=186.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|.... ....+.+|.||||||||+|.||+.+|+++++||++|++||+++...+...  +
T Consensus       137 ~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g  214 (345)
T 4g2n_A          137 LLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G  214 (345)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C
Confidence            47999999999999999999997532 12347899999999999999999999999999999999999765544332  7


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +..++++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            77767999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccc
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYI  210 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v  210 (221)
                       +.++|||++||+++|||+||+|.|  .++...+.+|+.+|++|+++  .|.|
T Consensus       295 -~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~--~~~V  344 (345)
T 4g2n_A          295 -AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP--DNLI  344 (345)
T ss_dssp             -SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBC
T ss_pred             -CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCC--CCCc
Confidence             889999999999999999999999  77778899999999999974  4554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=9.5e-53  Score=371.08  Aligned_cols=219  Identities=49%  Similarity=0.886  Sum_probs=198.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|........+.+|.|+||||||+|+||+.+|++++++|++ |++||++....+.+...|
T Consensus       129 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g  208 (364)
T 2j6i_A          129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG  208 (364)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT
T ss_pred             HHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC
Confidence            4799999999999999999999743221245789999999999999999999999999997 999999776666666778


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +....++++++++||+|++|+|++++|+++++++.++.||++++|||++||+++|+++|.++|++|+|.||+||||++||
T Consensus       209 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP  288 (364)
T 2j6i_A          209 ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQP  288 (364)
T ss_dssp             EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            77767899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC--C---CeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCC-CCCCccccccCCccCCC
Q 027577          160 APKDHPWRYM--P---NQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELAPQ  219 (221)
Q Consensus       160 ~~~~~~l~~~--~---n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~-~~~~~n~v~~~~~~~~~  219 (221)
                      +|.+||||.+  |   |+++|||+|++|.+  .++...+.+|+.+|++|+ ++++.|+|+.+.+|++|
T Consensus       289 ~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v~~~~~y~~~  356 (364)
T 2j6i_A          289 APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK  356 (364)
T ss_dssp             CCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEBTTBC---
T ss_pred             CCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCceecCCcCcchh
Confidence            9999999999  9   99999999999999  567778999999999998 55899999999999987

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=5.7e-53  Score=365.80  Aligned_cols=208  Identities=23%  Similarity=0.343  Sum_probs=186.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|...    .+.+|.|+||||||+|.||+.+|+++++||++|++||+++...+.....  
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--  181 (315)
T 3pp8_A          108 SQVLHWFRRFDDYQALKNQALWKPL----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--  181 (315)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--
T ss_pred             HHHHHHHhCChHHHHHHHhcccCCC----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--
Confidence            4799999999999999999999754    3578999999999999999999999999999999999876433211111  


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  261 (315)
T 3pp8_A          182 VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPL  261 (315)
T ss_dssp             ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCC
Confidence            11257999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCccccccCCcc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGEL  216 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~  216 (221)
                      |.+||||++||+++|||+|++|.+.++...+.+|+.+|++|++  +.|.|+.+.+|
T Consensus       262 ~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~ni~~~~~G~~--~~~~V~~~~GY  315 (315)
T 3pp8_A          262 PQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEP--VTGQVDRARGY  315 (315)
T ss_dssp             CTTCGGGGCTTEEECSSCSSCCCHHHHHHHHHHHHHHHHHTCC--CCCBCCCC---
T ss_pred             CCCChhhcCCCEEECCCCCcccHHHHHHHHHHHHHHHHHcCCC--CCceECcccCC
Confidence            9999999999999999999999988888889999999999997  47888888776

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=2.7e-53  Score=370.63  Aligned_cols=208  Identities=28%  Similarity=0.401  Sum_probs=186.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++...++.+++|.|.... ...+.+|.|+|+||||+|+||+.+|+++++|||+|++||+...  +.....++
T Consensus       107 ~l~L~~~r~~~~~~~~~~~~~~~~~~-~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~  183 (334)
T 3kb6_A          107 AMILTLVKRLKRIEDRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGC  183 (334)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHTTC
T ss_pred             HHHHHHhhcccccccccccccccccc-ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc--hhhhhcCc
Confidence            47999999999999999999987543 2357899999999999999999999999999999999998643  33445566


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       184 ~~-~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl  262 (334)
T 3kb6_A          184 VY-TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI  262 (334)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred             ee-cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence            65 48999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---------------CCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCcccccc
Q 027577          161 PKDH---------------PWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVK  212 (221)
Q Consensus       161 ~~~~---------------~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~  212 (221)
                      +.++               |||.+|||++|||+||+|.|  .++...+.+|+.+|++|++. ..+|.|+-
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~v~~  332 (334)
T 3kb6_A          263 LILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFVVG  332 (334)
T ss_dssp             HHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGEEEC
T ss_pred             cccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCcCCC
Confidence            7766               57889999999999999999  77788899999999999976 45566653

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.5e-52  Score=363.99  Aligned_cols=211  Identities=23%  Similarity=0.307  Sum_probs=186.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|...    .+.+|.|+||||||+|.||+++|+++++||++|++||+++...+.+.  +.
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~  182 (324)
T 3hg7_A          109 GHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QV  182 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EE
T ss_pred             HHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cc
Confidence            4799999999999999999999753    35689999999999999999999999999999999999764332211  12


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++.+.|+.||+|++|||+|||+++|+++|+++|++|+|.||++|||++||+
T Consensus       183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl  262 (324)
T 3hg7_A          183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL  262 (324)
T ss_dssp             ECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC
Confidence            23468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTIDLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ  219 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~  219 (221)
                      |.++|||++||+++|||+||+|.+.++...+.+|+.+|++|++  +.|.|+.+.++.|.
T Consensus       263 ~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~nl~~~~~G~~--~~~~V~~~~~~~~~  319 (324)
T 3hg7_A          263 PADSPLWGQPNLIITPHNSAYSFPDDVAQIFVRNYIRFIDGQP--LDGKIDFDKGYEGH  319 (324)
T ss_dssp             CTTCTTTTCTTEEECCSCSSCCCHHHHHHHHHHHHHHHHTTCC--CTTBCCCC------
T ss_pred             CCCChhhcCCCEEEeCCCccccHHHHHHHHHHHHHHHHHcCCC--CcceEChhhhcccc
Confidence            9999999999999999999999888888889999999999997  46888888777653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=4.8e-51  Score=359.38  Aligned_cols=214  Identities=23%  Similarity=0.329  Sum_probs=185.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV-AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|.+... ...+.+|.|+||||||+|.||+.+|+++++||++|++||++. ..+.+...|
T Consensus       140 ~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g  218 (365)
T 4hy3_A          140 GFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENG  218 (365)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTT
T ss_pred             HHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcC
Confidence            479999999999999999999654321 234679999999999999999999999999999999999975 455555677


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +.. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|. |+||||++||
T Consensus       219 ~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EP  296 (365)
T 4hy3_A          219 VEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEP  296 (365)
T ss_dssp             CEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSS
T ss_pred             eee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCC
Confidence            775 48999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCCC
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ  219 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~  219 (221)
                      ++.++|||++||+++|||+||+|.|  .++...+.+|+.+|++|+++  .|.++.+....+.
T Consensus       297 l~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~--~~~vn~~~~~~~~  356 (365)
T 4hy3_A          297 LPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPP--MRCKRAERETVSR  356 (365)
T ss_dssp             CCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCC--CSSEECCSCCC--
T ss_pred             CCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCc--ccccccchhhhhh
Confidence            9999999999999999999999999  67778899999999999986  3444434333333

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.4e-51  Score=359.41  Aligned_cols=211  Identities=25%  Similarity=0.402  Sum_probs=191.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|........+.+|.|+||||||+|.||+.+|++++++|++|++||+++...+.+...|+
T Consensus       110 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          110 GLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             HHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            47999999999999999999997432223467999999999999999999999999999999999998755666666777


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC--
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ--  158 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e--  158 (221)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|+++|++|+|.||++|||++|  
T Consensus       190 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~  268 (330)
T 4e5n_A          190 RQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW  268 (330)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCT
T ss_pred             eeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccc
Confidence            665 89999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             -----CCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCC
Q 027577          159 -----PAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  214 (221)
Q Consensus       159 -----p~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~  214 (221)
                           |++.++|||++||+++|||+||+|.|  .++...+.+|+.+|++|+++  .|.|+.+.
T Consensus       269 ~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~vn~~~  329 (330)
T 4e5n_A          269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP--INAVNRLP  329 (330)
T ss_dssp             TCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSCC--TTBSSCCC
T ss_pred             cccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCCC--CCccCCCC
Confidence                 99999999999999999999999998  77778899999999999874  55565543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5e-52  Score=361.01  Aligned_cols=212  Identities=21%  Similarity=0.311  Sum_probs=184.5

Q ss_pred             CcHHHHHhCchHH-HHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPG-HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~-~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+ ++.+++|.|....   .+.+|.|+||||||+|.||+.+|+++++||++|++||+++...+.+..  
T Consensus       104 ~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--  178 (324)
T 3evt_A          104 AAMLSVVRGYHAAWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--  178 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--
T ss_pred             HHHHHHHhChhHHHHHHHhcCCcccCC---CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--
Confidence            4799999999999 9999999998642   467999999999999999999999999999999999997654332211  


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      .....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|.||++|||++||
T Consensus       179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  258 (324)
T 3evt_A          179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP  258 (324)
T ss_dssp             EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred             ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            12345899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCC
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  218 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~  218 (221)
                      +|.++|||++||+++|||+||+|.+  .++...+.+|+.+|++|++. +.|.|+.+.++-|
T Consensus       259 l~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~-~~n~V~~~~~~~~  318 (324)
T 3evt_A          259 LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTL-VRNQVDLNRGYEG  318 (324)
T ss_dssp             CCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCC-CSCBCC-------
T ss_pred             CCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCC-CCceECcccccCC
Confidence            9999999999999999999999987  77778899999999976643 5788888877655

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.5e-51  Score=360.26  Aligned_cols=210  Identities=22%  Similarity=0.335  Sum_probs=190.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc--------cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV--------AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~--------~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (221)
                      ++||++.|++..+++.+++|.|.....        ...+.+|.|+||||||+|.||+++|++++++|++|++||++. ..
T Consensus       117 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~  195 (352)
T 3gg9_A          117 ALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SK  195 (352)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HH
T ss_pred             HHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CH
Confidence            479999999999999999999986320        124679999999999999999999999999999999999864 33


Q ss_pred             hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 027577           73 QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (221)
Q Consensus        73 ~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~l  152 (221)
                      +.+...|+..+.++++++++||+|++|+|++++|+++++.+.++.||+|++|||+|||+++|+++|+++|++|+|.||++
T Consensus       196 ~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~l  275 (352)
T 3gg9_A          196 ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAI  275 (352)
T ss_dssp             HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEE
T ss_pred             HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEe
Confidence            44556788877799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       153 DV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                      |||++||++.++|||++||+++|||+|++|.+  .++...+.+|+.+|++|+|++.+|.-.
T Consensus       276 DV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~~~Vn~~~  336 (352)
T 3gg9_A          276 DVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDSVANPTA  336 (352)
T ss_dssp             CCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCTTBSCGGG
T ss_pred             cccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcccCHHH
Confidence            99999999999999999999999999999999  677788999999999998766555433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.6e-50  Score=359.11  Aligned_cols=218  Identities=48%  Similarity=0.857  Sum_probs=193.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|........+.+|.|+||||||+|.||+.+|+++++||++|++||++....+.+...|+
T Consensus       156 ~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            47999999999999999999997422112356899999999999999999999999999999999997666666666788


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|.++|++|+|.||++|||++||+
T Consensus       236 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~  315 (393)
T 2nac_A          236 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  315 (393)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             eecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence            76668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP  218 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~  218 (221)
                      +.++|||++||+++|||+|++|.+  .++...+.+|+++|++|+++.....|+..+.++|
T Consensus       316 ~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~v~~~~~~~  375 (393)
T 2nac_A          316 PKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAG  375 (393)
T ss_dssp             CTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC-
T ss_pred             CCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeEeccCCcccc
Confidence            999999999999999999999998  6677789999999999998733333445666665

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=6.4e-50  Score=356.70  Aligned_cols=211  Identities=27%  Similarity=0.439  Sum_probs=182.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|.+..  ..+.+|.||||||||+|.||+.+|+++++|||+|++||+++....    .+.
T Consensus       123 ~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~  196 (416)
T 3k5p_A          123 GEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNV  196 (416)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTB
T ss_pred             HHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCc
Confidence            47999999999999999999998653  346799999999999999999999999999999999998653221    134


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||++||+
T Consensus       197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~  276 (416)
T 3k5p_A          197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPA  276 (416)
T ss_dssp             EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCS
T ss_pred             EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC----CCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcC-CCCCCccccccCCccC
Q 027577          161 PKD----HPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKG-EDFPVQNYIVKAGELA  217 (221)
Q Consensus       161 ~~~----~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g-~~~~~~n~v~~~~~~~  217 (221)
                      +.+    +|||++||+++|||+||+|.|  .++...+.+|+.+|+++ .+.+.+|.+...-...
T Consensus       277 ~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~p~~~~~~~  340 (416)
T 3k5p_A          277 SNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPR  340 (416)
T ss_dssp             STTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSCCCCCCCC
T ss_pred             CcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCceeeCCCcCCCCC
Confidence            765    799999999999999999999  77788899999999955 4557778776554443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.4e-50  Score=352.21  Aligned_cols=198  Identities=25%  Similarity=0.409  Sum_probs=154.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|++..+++.+++|.|........+.+|.||||||||+|.||+++|++++++|++|++||+++..     ..+.
T Consensus       136 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~  210 (340)
T 4dgs_A          136 ALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDW  210 (340)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCC
T ss_pred             HHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCc
Confidence            47999999999999999999998641112367999999999999999999999999999999999997643     2245


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.++.||++++|||++||+++|+++|+++|++|+|.||+||||++||+
T Consensus       211 ~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~  290 (340)
T 4dgs_A          211 IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA  290 (340)
T ss_dssp             EECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSS
T ss_pred             eecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      +. +|||++|||++|||+|++|.|  .++...+.+|+.+|++|+++
T Consensus       291 ~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~  335 (340)
T 4dgs_A          291 IR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA  335 (340)
T ss_dssp             CC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             Cc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            75 599999999999999999999  67778899999999999985

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=1e-49  Score=348.61  Aligned_cols=205  Identities=23%  Similarity=0.299  Sum_probs=181.0

Q ss_pred             CcHHHHHhCchHHHHHHH-cCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVI-SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~-~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.++ +|.|.+.. ...+.+|.|+||||||+|.||+.+|+++++||++|++||++... .  ...+
T Consensus       113 ~l~L~~~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~--~~~~  188 (343)
T 2yq5_A          113 TQAMYLLRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP-E--FEPF  188 (343)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG-G--GTTT
T ss_pred             HHHHHHHhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh-h--hhcc
Confidence            479999999999999999 99876532 24578999999999999999999999999999999999997643 1  1223


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +... ++++++++||+|++|+|++++|+++++.+.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       189 ~~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          189 LTYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             cccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            4444 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --CCCC-----------CCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccccc
Q 027577          160 --APKD-----------HPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVK  212 (221)
Q Consensus       160 --~~~~-----------~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~  212 (221)
                        ++.+           +|||++|||++|||+|++|.|  .++...+.+|+.+|++|+++  .|.|+.
T Consensus       268 ~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~--~~~v~~  333 (343)
T 2yq5_A          268 SYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRP--RSIVNL  333 (343)
T ss_dssp             GTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBC--
T ss_pred             CccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHHcCCCC--CceECC
Confidence              4555           489999999999999999999  67788899999999999985  455543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=5.1e-49  Score=351.24  Aligned_cols=204  Identities=26%  Similarity=0.411  Sum_probs=173.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|+++.+++.+++|.|.+..  ..+.+|.|||+||||+|+||+.+|+++++|||+|++||++....    ..++
T Consensus       112 ~~~L~~~R~i~~~~~~~~~g~W~~~~--~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~  185 (404)
T 1sc6_A          112 GELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNA  185 (404)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTC
T ss_pred             HHHHHHHhChHHHHHHHHcCCccccC--CCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCc
Confidence            47999999999999999999997543  34679999999999999999999999999999999999865322    1135


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|.++|++|++.||++|||+.||+
T Consensus       186 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~  265 (404)
T 1sc6_A          186 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  265 (404)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             eecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCC
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCcccc
Q 027577          161 PK----DHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYI  210 (221)
Q Consensus       161 ~~----~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v  210 (221)
                      +.    ++|||++||+++|||+|++|.|  .++...+.+|+.+|++|+++ +.+|.+
T Consensus       266 ~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~vn~p  322 (404)
T 1sc6_A          266 TNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFP  322 (404)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBSSSC
T ss_pred             CccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcceeccc
Confidence            74    5799999999999999999999  66777899999999998754 555544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.1e-48  Score=334.65  Aligned_cols=207  Identities=20%  Similarity=0.299  Sum_probs=184.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|....   ...+|.|+||||||+|.||+.+|++++++|++|++||++.. ..     +.
T Consensus        92 ~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~  162 (303)
T 1qp8_A           92 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PW  162 (303)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----Cc
Confidence            47999999999999999999996431   23489999999999999999999999999999999998764 21     33


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC-CCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQP  159 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~-~~ep  159 (221)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++||| ++||
T Consensus       163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep  242 (303)
T 1qp8_A          163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  242 (303)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCC
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999 8899


Q ss_pred             CCCCCCCCCCCCeEECCCCCcC--CHH--HHHHHHHHHHHHHHHcCCCCCCccccccCCccCCC
Q 027577          160 APKDHPWRYMPNQAMTPHVSGT--TID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ  219 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~--t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~~~~~~  219 (221)
                      ++.++|||++||+++|||+||+  |.+  .++...+.+|+.+|++|++  +.|.|+.+ +|.++
T Consensus       243 ~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~--~~~~v~~~-~y~~~  303 (303)
T 1qp8_A          243 FAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR--PRNIAKRE-DYIGS  303 (303)
T ss_dssp             CGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSC--CSCBCCGG-GTC--
T ss_pred             CCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCC--CCceeCHH-HcCCC
Confidence            9989999999999999999998  888  6677889999999999986  46777765 67764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=2.2e-48  Score=339.62  Aligned_cols=204  Identities=24%  Similarity=0.352  Sum_probs=181.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|.+..  ..+.++.|+||||||+|.||+.+|++++++|++|++||++....  +.. .+
T Consensus       113 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~  187 (333)
T 1j4a_A          113 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KG  187 (333)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TT
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCC--cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hC
Confidence            47999999999999999999997532  34678999999999999999999999999999999999976432  233 24


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC-
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-  159 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep-  159 (221)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|+++|++|+|.||+||||++|| 
T Consensus       188 ~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  267 (333)
T 1j4a_A          188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  267 (333)
T ss_dssp             CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            4445899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCCCC-----------CCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          160 -APKDH-----------PWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       160 -~~~~~-----------~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                       +|.+|           |||++|||++|||+|++|.+  .++...+.+|+.+|++|+++  .|.|+
T Consensus       268 ~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v~  331 (333)
T 1j4a_A          268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA--ETPVK  331 (333)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--SSBCC
T ss_pred             ccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCC--Ccccc
Confidence             45544           59999999999999999999  67788899999999999874  45554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.2e-48  Score=339.71  Aligned_cols=206  Identities=22%  Similarity=0.377  Sum_probs=180.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCcc-CcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|.+ ..  ..+.+|.|+||||||+|.||+.+|++++++|++|++||++....  +.. .
T Consensus       111 ~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~  185 (333)
T 1dxy_A          111 TDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--DHP-D  185 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHTC--CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--CCT-T
T ss_pred             HHHHHHhhhHHHHHHHHHcCCcccccC--CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--hHh-c
Confidence            479999999999999999999964 22  24678999999999999999999999999999999999876432  122 2


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +.. .++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       186 ~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          186 FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            443 4899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--C--------CC---CCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccCC
Q 027577          160 A--P--------KD---HPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKAG  214 (221)
Q Consensus       160 ~--~--------~~---~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~~  214 (221)
                      +  +        .+   +|||++||+++|||+|++|.+  .++...+.+|+.+|++|+++  .|.|+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~--~~~v~~~~  332 (333)
T 1dxy_A          265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET--STEVTGPA  332 (333)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC--TTEECC--
T ss_pred             CcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCCC--CceeCCCC
Confidence            3  1        12   589999999999999999999  67788899999999999874  56676654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.2e-47  Score=327.14  Aligned_cols=191  Identities=25%  Similarity=0.401  Sum_probs=174.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|....    ..+|.|+||||||+|.||+++|++++++|++|++||+++...+.     +
T Consensus        91 ~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~  161 (290)
T 3gvx_A           91 ALLLAHAKNILENNELMKAGIFRQSP----TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----D  161 (290)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC----CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----S
T ss_pred             HHHHHHHHhhhhhhhHhhhcccccCC----ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----c
Confidence            47999999999999999999998642    36899999999999999999999999999999999997644322     4


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.+|++|||++||+
T Consensus       162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCeEECCCCC-cCCHH--HHHHHHHHHHHHHHHcCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVS-GTTID--LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a-~~t~~--~~~~~~~~~~~~~~~~g~~  203 (221)
                         +|||++||+++|||+| ++|.+  .++...+.+|+.+|++|+-
T Consensus       242 ---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          242 ---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             ---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             ---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence               8999999999999999 88888  7888889999999999874

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=332.98  Aligned_cols=199  Identities=30%  Similarity=0.514  Sum_probs=178.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|....  ..+.+|.|+||||||+|.||+.+|++++++|++|++||++... +.+...|+
T Consensus       132 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          132 GMIMCLARQIPQATASMKDGKWERKK--FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCTGG--GCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTC
T ss_pred             HHHHHHHhchHHHHHHHHcCCCCccC--CCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            47999999999999999999997532  2367899999999999999999999999999999999987543 44556677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||+.|| 
T Consensus       209 ~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-  286 (335)
T 2g76_A          209 QQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-  286 (335)
T ss_dssp             EE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-
T ss_pred             ee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-
Confidence            65 4899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      +.++|||++||+++|||+|++|.+  .++...+.+|+.+|++|+++
T Consensus       287 ~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~  332 (335)
T 2g76_A          287 PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSL  332 (335)
T ss_dssp             CSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            667999999999999999999999  67778899999999999875

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.1e-46  Score=330.39  Aligned_cols=211  Identities=27%  Similarity=0.394  Sum_probs=187.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcc-----cCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (221)
                      ++||++.|++..+++.+++|.|.....     .....+|.|+||||||+|.||+.+|++++++|++|++||++... ...
T Consensus       128 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  206 (347)
T 1mx3_A          128 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVE  206 (347)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THH
T ss_pred             HHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhH
Confidence            479999999999999999999953210     01136899999999999999999999999999999999987543 334


Q ss_pred             HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ...|+..+.++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|.++|++|+|.||++|||
T Consensus       207 ~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~  286 (347)
T 1mx3_A          207 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  286 (347)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeec
Confidence            55677766789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC-CCcccccc
Q 027577          156 NPQPAP-KDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF-PVQNYIVK  212 (221)
Q Consensus       156 ~~ep~~-~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~-~~~n~v~~  212 (221)
                      +.||++ .++|||.+||+++|||+|++|.+  .++...+.+|+.+|++|+++ ++.|.|++
T Consensus       287 ~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~~  347 (347)
T 1mx3_A          287 ESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNK  347 (347)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC-
T ss_pred             ccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCCC
Confidence            999987 47899999999999999999999  67778899999999999876 46677753

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.9e-47  Score=326.51  Aligned_cols=197  Identities=32%  Similarity=0.569  Sum_probs=181.3

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|....  ..+.+|.|+||||||+|.||+.+|++++++|++|++||++... +.+.+.|+
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          109 GLMFSVARKIAFADRKMREGVWAKKE--AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCTTT--CCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccC--cCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCc
Confidence            47999999999999999999997422  2357899999999999999999999999999999999997644 45556777


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|++|+|.||++|||+.||+
T Consensus       186 ~~~-~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (307)
T 1wwk_A          186 KFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL  264 (307)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred             ccc-CHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            664 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKG  201 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g  201 (221)
                      +.++|||++||+++|||++++|.+  .++...+.+|+.+|++|
T Consensus       265 ~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          265 PKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             CTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999  67778899999999976

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=2.5e-47  Score=332.74  Aligned_cols=203  Identities=26%  Similarity=0.415  Sum_probs=178.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|.+.. ...+.+|.|+||||||+|.||+.+|++++++|++|++||++....  +.. .+
T Consensus       112 ~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~  187 (331)
T 1xdw_A          112 TQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--IED-YC  187 (331)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--CTT-TC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--HHh-cc
Confidence            47899999999999999999996411 134678999999999999999999999999999999999876433  122 24


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|+|.||+||||++||+
T Consensus       188 ~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  266 (331)
T 1xdw_A          188 TQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEAS  266 (331)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGG
T ss_pred             cc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            43 48999999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             --CCC-------C----CCCCC-CCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccc
Q 027577          161 --PKD-------H----PWRYM-PNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYI  210 (221)
Q Consensus       161 --~~~-------~----~l~~~-~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v  210 (221)
                        +.+       +    |||++ ||+++|||+|++|.+  .++...+.+|+.+|++|+++  .|.|
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v  330 (331)
T 1xdw_A          267 VFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDC--PNKI  330 (331)
T ss_dssp             TTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC--TTBC
T ss_pred             cccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCC--CCCC
Confidence              332       3    79999 999999999999999  67788899999999999874  4544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3e-46  Score=324.57  Aligned_cols=201  Identities=26%  Similarity=0.400  Sum_probs=182.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcC-CCCChhHHHhc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKET   78 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~   78 (221)
                      ++||++.|++..+++.+++|.|.... ....+.++.|+||||||+|.||+++|++++++|++|++||+ +... ..+.+.
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~  188 (320)
T 1gdh_A          110 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASY  188 (320)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhc
Confidence            47999999999999999999996321 12346789999999999999999999999999999999999 7643 445556


Q ss_pred             CceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC
Q 027577           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (221)
Q Consensus        79 g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e  158 (221)
                      |+....++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|++|++.||++|||+.|
T Consensus       189 g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~e  268 (320)
T 1gdh_A          189 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE  268 (320)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            77766689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          159 PAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       159 p~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      | +.++|||++||+++|||++++|.+  .++...+ +|+.+|++|+++
T Consensus       269 P-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~  314 (320)
T 1gdh_A          269 P-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGAD  314 (320)
T ss_dssp             T-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSC
T ss_pred             C-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCC
Confidence            9 889999999999999999999999  6777778 999999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.1e-45  Score=319.87  Aligned_cols=200  Identities=32%  Similarity=0.544  Sum_probs=179.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|.... ....+.++.|+||||||+|.||+.+|++++++|++|++||++.....      
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------  181 (311)
T 2cuk_A          108 ALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------  181 (311)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------
Confidence            47999999999999999999996321 11235789999999999999999999999999999999999764432      


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +. ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||++||+++|+++|.++|+ |++.||++|||+.||
T Consensus       182 ~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP  259 (311)
T 2cuk_A          182 YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP  259 (311)
T ss_dssp             SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred             cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence            22 4589999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccc
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYI  210 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v  210 (221)
                      ++.++|||++||+++|||++++|.+  .++...+.+|+.+|++|+++  .|.|
T Consensus       260 ~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~--~~~v  310 (311)
T 2cuk_A          260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREP--PNPV  310 (311)
T ss_dssp             CCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC--SSBC
T ss_pred             CCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CCcc
Confidence            9999999999999999999999999  67778899999999999864  4544

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.1e-46  Score=323.58  Aligned_cols=197  Identities=22%  Similarity=0.339  Sum_probs=180.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|..    ..+.++.|+||||||+|.||+.+|++++++|++|++||+++.. ..+...|+
T Consensus       111 ~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (313)
T 2ekl_A          111 GLMIAAARKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR-EKAEKINA  185 (313)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcch-hHHHhcCc
Confidence            479999999999999999999962    2467899999999999999999999999999999999997643 34556677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|++|++.||++|||+.||+
T Consensus       186 ~~~-~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (313)
T 2ekl_A          186 KAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPP  264 (313)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSC
T ss_pred             eec-CHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence            754 8999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---CCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCC
Q 027577          161 PKDH---PWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       161 ~~~~---~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~  204 (221)
                      + ++   |||++||+++|||++++|.+  .++...+.+|+.+|++|+++
T Consensus       265 ~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          265 K-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             C-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             C-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            7 66   99999999999999999999  67778899999999999874

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=2.9e-45  Score=319.76  Aligned_cols=201  Identities=25%  Similarity=0.417  Sum_probs=181.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++..+++.+++|.|..... ..+.+|.|+||||||+|.||+.+|+.++++|++|++||+++....     ++
T Consensus       130 ~l~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~  203 (333)
T 3ba1_A          130 GLILAVLRRICECDKYVRRGAWKFGDF-KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NY  203 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTGGGGCCC-CCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcccc-ccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----Cc
Confidence            479999999999999999999974321 235789999999999999999999999999999999999764321     55


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|.+++++++++++.++.||++++|||++||.++|+++|.++|++|++.+|++|||++||.
T Consensus       204 ~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~  283 (333)
T 3ba1_A          204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPE  283 (333)
T ss_dssp             EEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTC
T ss_pred             eecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCC
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccc
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYI  210 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v  210 (221)
                      +. +|||++||+++|||+|++|.+  .++...+.+|+.+|++|+++  .|.|
T Consensus       284 ~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~--~~~V  332 (333)
T 3ba1_A          284 VP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL--LTPV  332 (333)
T ss_dssp             CC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC--SSBC
T ss_pred             Cc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CCCC
Confidence            76 899999999999999999999  67778899999999999875  4444

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=3.5e-44  Score=312.80  Aligned_cols=208  Identities=28%  Similarity=0.433  Sum_probs=186.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccC-cccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      ++||++.|++..+++.+++|.|... .....+.++.|+||||||+|.||+.+|+.++++|++|++||++....+.....+
T Consensus       119 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g  198 (330)
T 2gcg_A          119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQ  198 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcC
Confidence            4799999999999999999999642 112335789999999999999999999999999999999998765555555667


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      +... ++++++++||+|++|+|.+++++++++++.++.||++++|||++||.++|+++|.++|++|++.|+++|||++||
T Consensus       199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep  277 (330)
T 2gcg_A          199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP  277 (330)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            7665 899999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          160 APKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                      ++.++|||+++|+++|||+|+.|.+  .++...+.+|+.+|++|+++  .|.|+
T Consensus       278 l~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~  329 (330)
T 2gcg_A          278 LPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM--PSELK  329 (330)
T ss_dssp             CCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCC--TTEEC
T ss_pred             CCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC--CCCCC
Confidence            9999999999999999999999988  67777899999999999874  45543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.1e-44  Score=317.95  Aligned_cols=209  Identities=25%  Similarity=0.345  Sum_probs=185.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCC---CccCc--ccCcccCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCCChhH
Q 027577            1 MRILILVRNFLPGHHQVISGE---WNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL   74 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~---w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~~~~~   74 (221)
                      ++||++.|++..+++.+++|.   |....  ....+.+|.|+||||||+|.||+.+|+.++ ++|++|++||++....+.
T Consensus       123 ~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~  202 (348)
T 2w2k_A          123 YLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET  202 (348)
T ss_dssp             HHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH
T ss_pred             HHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh
Confidence            479999999999999999999   94211  012356899999999999999999999999 999999999998766555


Q ss_pred             HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577           75 EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus        75 ~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +.+.|+....++++++++||+|++|+|.+++++++++++.++.||++++|||++||+++|+++|.++|++|++.||++||
T Consensus       203 ~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv  282 (348)
T 2w2k_A          203 EKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV  282 (348)
T ss_dssp             HHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESS
T ss_pred             HhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEecc
Confidence            55567776668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccccc
Q 027577          155 WNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVK  212 (221)
Q Consensus       155 ~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~  212 (221)
                      |++|| +.++||+.+||+++|||+|+.|.+  .++...+.+|+.+|++|+++  .|.|+.
T Consensus       283 ~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~--~~~v~~  339 (348)
T 2w2k_A          283 HEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKP--LLTPAG  339 (348)
T ss_dssp             CTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC--CSSBCS
T ss_pred             CCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--cceecc
Confidence            99999 667889999999999999999999  67777889999999999764  444443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.8e-44  Score=313.72  Aligned_cols=206  Identities=31%  Similarity=0.542  Sum_probs=182.7

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcc----cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRA----YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~----~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      ++||++.|++..+++.+++|.|........+    .+|.|+||||||+|.||+.+|+.++++|++|++||++... +.+.
T Consensus       107 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~  185 (333)
T 2d0i_A          107 GLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK  185 (333)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH
T ss_pred             HHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh
Confidence            4799999999999999999999631100123    6899999999999999999999999999999999997653 4445


Q ss_pred             hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        77 ~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ..|+... ++++++++||+|++|+|.+++++++++++.++.||++ ++||+|||.++|+++|.++|++|++.||++|||+
T Consensus       186 ~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          186 ELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             HHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             hcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            5677654 8999999999999999999999999998889999999 9999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCC-CeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCcccccc
Q 027577          157 PQPAPKDHPWRYMP-NQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVK  212 (221)
Q Consensus       157 ~ep~~~~~~l~~~~-n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~  212 (221)
                      +||++ ++|||++| |+++|||++++|.+  .++...+.+|+.+|++|+++  .|.|+.
T Consensus       264 ~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~~  319 (333)
T 2d0i_A          264 KEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP--EDLVNK  319 (333)
T ss_dssp             SSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCC--TTBSCT
T ss_pred             CCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--cCccCH
Confidence            99988 89999999 99999999999999  67778899999999999874  455553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=6.4e-44  Score=311.59  Aligned_cols=206  Identities=33%  Similarity=0.545  Sum_probs=183.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCc----c-CcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWN----V-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~----~-~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (221)
                      ++||++.|++..+++.+++|.|.    . ......+.+|.|+||||||+|.||+.+|+.++++|++|++||++... +.+
T Consensus       110 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~  188 (334)
T 2dbq_A          110 ALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE  188 (334)
T ss_dssp             HHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH
Confidence            47999999999999999999996    1 11112357899999999999999999999999999999999997654 444


Q ss_pred             HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ...|+.. .++++++++||+|++|+|.+++++++++++.++.||++++|||+|||.++|+++|.++|++|++.||++|||
T Consensus       189 ~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~  267 (334)
T 2dbq_A          189 RELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVF  267 (334)
T ss_dssp             HHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCC
T ss_pred             hhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCC
Confidence            5567765 489999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccc
Q 027577          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIV  211 (221)
Q Consensus       156 ~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~  211 (221)
                      ++|| +.++|||.+||+++|||+|+.|.+  .++...+.+|+.+|++|+++  .|.|+
T Consensus       268 ~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~--~~~v~  322 (334)
T 2dbq_A          268 EEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP--PTLVN  322 (334)
T ss_dssp             SSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCC--TTBSC
T ss_pred             CCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC--ccccC
Confidence            9999 888999999999999999999999  67778899999999999875  45554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.6e-41  Score=310.18  Aligned_cols=206  Identities=30%  Similarity=0.510  Sum_probs=185.1

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|+++++++.+++|.|....  +.+.+|.|+||||||+|.||+++|++++++|++|++||++. ..+.+.+.|+
T Consensus       109 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~  185 (529)
T 1ygy_A          109 ALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGI  185 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHHhCCCcccC--cCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCc
Confidence            47999999999999999999997542  34678999999999999999999999999999999999976 3455666788


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ... ++++++++||+|++|+|.++++.++++++.++.||+|+++||++||.++|+++|.++|++|++.||++|||+.||.
T Consensus       186 ~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~  264 (529)
T 1ygy_A          186 ELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  264 (529)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             EEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC
Confidence            765 8999999999999999999999999999899999999999999999999999999999999999999999999995


Q ss_pred             CCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCCccccccC
Q 027577          161 PKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPVQNYIVKA  213 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~~n~v~~~  213 (221)
                       .++|||+++|+++|||+++.|.+  .++...+.+++.+|+.|++.  .|.++..
T Consensus       265 -~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~--~~~v~~~  316 (529)
T 1ygy_A          265 -TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFV--PDAVNVG  316 (529)
T ss_dssp             -SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCC--TTBCSCC
T ss_pred             -CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CcccCCc
Confidence             68999999999999999999988  66777889999999999864  3444443

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.1e-42  Score=303.39  Aligned_cols=165  Identities=24%  Similarity=0.429  Sum_probs=148.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh----hh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~----t~  107 (221)
                      .+|.|+||||||+|+||+.+|++++++|++|++||+..   +. ...+. ...++++++++||+|++|+|++++    |+
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~---~~-~~~~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~  189 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA-RGDEG-DFRTLDELVQEADVLTFHTPLYKDGPYKTL  189 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHH---HH-TTCCS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCT
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCh---HH-hccCc-ccCCHHHHHhhCCEEEEcCcCCccccccch
Confidence            57999999999999999999999999999999999742   11 11233 346899999999999999999999    99


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--H
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--L  185 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~  185 (221)
                      ++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||++. ++||.++ +++|||+||+|.|  .
T Consensus       190 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~TPHiag~t~e~~~  267 (381)
T 3oet_A          190 HLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIGTSHIAGYTLEGKA  267 (381)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEECSSCTTCCHHHHH
T ss_pred             hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chhhhCC-EEECCccCcCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875 4688765 8999999999999  6


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 027577          186 RYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~  203 (221)
                      ++...+.+|+.+|+++.+
T Consensus       268 ~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          268 RGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             HHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            777789999999998854

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7.6e-40  Score=289.33  Aligned_cols=165  Identities=28%  Similarity=0.474  Sum_probs=148.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChh----hh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~----t~  107 (221)
                      .+|.|+||||||+|+||+.+|++++++|++|++||++..   . ...+.. ..++++++++||+|++|+|++++    |+
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~-~~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ---A-REPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH---H-HSTTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChh---h-hccCcc-cCCHHHHHHhCCEEEEeccCccccccchh
Confidence            479999999999999999999999999999999997431   1 123443 35899999999999999999999    99


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--H
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--L  185 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~  185 (221)
                      ++++++.++.||+|+++||+|||+++|+++|.++|++|+|.+|+||||++||++ +++|+. +|+++|||+||+|.|  .
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~  264 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKL  264 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999965 456777 599999999999999  6


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 027577          186 RYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~  203 (221)
                      ++...+.+|+.+|++|++
T Consensus       265 ~~~~~~~~nl~~~l~g~~  282 (380)
T 2o4c_A          265 RGTAQIYQAYCAWRGIAE  282 (380)
T ss_dssp             HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            777789999999999985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.97  E-value=8.8e-32  Score=243.47  Aligned_cols=184  Identities=15%  Similarity=0.167  Sum_probs=157.0

Q ss_pred             HHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCC
Q 027577            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (221)
Q Consensus         6 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (221)
                      +.|++....+.+++| |...    .+.++.|+||||||+|.||+.+|++++++|++|++||+++.....+...|+.. .+
T Consensus       232 l~r~~~~~~~~l~~g-w~r~----~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~  305 (479)
T 1v8b_A          232 KYDNVYGCRHSLPDG-LMRA----TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VT  305 (479)
T ss_dssp             TTHHHHHHHHHHHHH-HHHH----HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CC
T ss_pred             HHhchHhHHHHHhhh-hhhc----cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cC
Confidence            457777777788888 8642    35689999999999999999999999999999999999754322344557764 48


Q ss_pred             HHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH--HHHhCCceEEEeeCCCCCCCCC
Q 027577           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD--ACSSGHIAGYSGDVWNPQPAPK  162 (221)
Q Consensus        86 l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~--al~~g~i~~a~lDV~~~ep~~~  162 (221)
                      +++++++||+|++|+    .+.++++.+.|+.||+|++|||++||.+ ||+++|.+  +|++|+|. +++|||   |+|.
T Consensus       306 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~  377 (479)
T 1v8b_A          306 LDEIVDKGDFFITCT----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPN  377 (479)
T ss_dssp             HHHHTTTCSEEEECC----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTT
T ss_pred             HHHHHhcCCEEEECC----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCC
Confidence            999999999999995    5788999999999999999999999999 99999999  99999999 899998   4456


Q ss_pred             CCCCCCC--CCeEECCCCC-cCCHH---HHHHHHHHHHHHHHHcCC--CC
Q 027577          163 DHPWRYM--PNQAMTPHVS-GTTID---LRYAAGVKDMLDRYFKGE--DF  204 (221)
Q Consensus       163 ~~~l~~~--~n~~~tPH~a-~~t~~---~~~~~~~~~~~~~~~~g~--~~  204 (221)
                      ++|||.+  ||+++| |+| +.+.+   .++...+.+|+..|++|+  ++
T Consensus       378 ~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l  426 (479)
T 1v8b_A          378 GNKIIVLARGRLLNL-GCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKY  426 (479)
T ss_dssp             SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred             CCeeeEecCCCEEEE-eccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            8899999  999999 999 66644   456667899999999998  65

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.97  E-value=3.7e-32  Score=246.76  Aligned_cols=183  Identities=14%  Similarity=0.167  Sum_probs=151.9

Q ss_pred             HHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCC
Q 027577            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (221)
Q Consensus         6 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (221)
                      +.|++....+.+.+| |..    ..+.++.|+||||||+|.||+.+|++++++|++|++||+++.....+...|+.. .+
T Consensus       252 l~r~~~~~~~~l~~g-w~~----~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~  325 (494)
T 3d64_A          252 KFDNLYGCRESLVDG-IKR----ATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VT  325 (494)
T ss_dssp             HHHHHHHHHTTHHHH-HHH----HHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CC
T ss_pred             HHhhhHhhhhhhhhh-hhh----ccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CC
Confidence            456666666666666 753    235689999999999999999999999999999999999753322333456665 48


Q ss_pred             HHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeeCCCCCCCCCCC
Q 027577           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH  164 (221)
Q Consensus        86 l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~  164 (221)
                      +++++++||+|++|+    .|.++++.+.++.||+|++|||++||++ ||+++| ++|++|+|. +++||   +|+|.++
T Consensus       326 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~  396 (494)
T 3d64_A          326 MEYAADKADIFVTAT----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGK  396 (494)
T ss_dssp             HHHHTTTCSEEEECS----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSC
T ss_pred             HHHHHhcCCEEEECC----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCC
Confidence            999999999999998    4788999999999999999999999999 699999 999999988 55554   5777889


Q ss_pred             CCCCC--CCeEECCCCC-cCCHH---HHHHHHHHHHHHHHHcCCCC
Q 027577          165 PWRYM--PNQAMTPHVS-GTTID---LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       165 ~l~~~--~n~~~tPH~a-~~t~~---~~~~~~~~~~~~~~~~g~~~  204 (221)
                      |||.+  ||+++| |+| +.+.+   .++...+.+|+..|++|+++
T Consensus       397 pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~  441 (494)
T 3d64_A          397 RVILLAEGRLVNL-GCATGHPSFVMSNSFTNQTLAQIELFTRGGEY  441 (494)
T ss_dssp             EEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             chhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999  999999 999 66744   55667789999999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.86  E-value=1.3e-22  Score=184.49  Aligned_cols=164  Identities=16%  Similarity=0.173  Sum_probs=136.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+.|++|+|+|+|.||+.+|+.++.+|++|+++|+++...+.+.+.|+.. .+++++++.+|+|+.|++    +.++++
T Consensus       270 ~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atg----t~~~i~  344 (494)
T 3ce6_A          270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATG----NKDIIM  344 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSS----SSCSBC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCC----CHHHHH
Confidence            468999999999999999999999999999999999765545566778875 488999999999999986    456788


Q ss_pred             HHHHhcCCCCCEEEEcCCCCc-cCHHHHHH-HHHhCCceEEEeeCCCCCCCCCCCC--CCCCCCeE----ECCCCCcCCH
Q 027577          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD-ACSSGHIAGYSGDVWNPQPAPKDHP--WRYMPNQA----MTPHVSGTTI  183 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~-al~~g~i~~a~lDV~~~ep~~~~~~--l~~~~n~~----~tPH~a~~t~  183 (221)
                      .+.++.||++++++|++|+.. +|+.+|.. +|+++.+. +.+|+++.++  ..++  ++..++++    +|||+++.+.
T Consensus       345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~--~~~~l~LL~~grlvnL~~~TPH~a~~~~  421 (494)
T 3ce6_A          345 LEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD--TGRSIIVLSEGRLLNLGNATGHPSFVMS  421 (494)
T ss_dssp             HHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT--TCCEEEEEGGGSCHHHHHSCCSCHHHHH
T ss_pred             HHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC--cchHHHHHhCCCEEeccCCCCCccccch
Confidence            889999999999999999998 99999988 78888887 6679886532  1445  55567887    9999998877


Q ss_pred             HHHHHHHHHHHHHHHHcCCCC
Q 027577          184 DLRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~  204 (221)
                      +. +...+.++++.|.+|+++
T Consensus       422 ~s-~~~qa~~ai~~~~~g~~~  441 (494)
T 3ce6_A          422 NS-FANQTIAQIELWTKNDEY  441 (494)
T ss_dssp             HH-HHHHHHHHHHHHHTGGGC
T ss_pred             HH-HHHHHHHHHHHHHcCCCC
Confidence            63 456678899999998765

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.82  E-value=4.4e-22  Score=177.90  Aligned_cols=153  Identities=14%  Similarity=0.194  Sum_probs=115.6

Q ss_pred             ccC-CCCCEEEEEccCHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCE-EEEeCCCChhhh
Q 027577           31 AYD-LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI-VVVNTPLTEKTR  107 (221)
Q Consensus        31 ~~~-l~g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDv-Vv~~~p~~~~t~  107 (221)
                      +.+ |+|+||+|+|+|+||+.+|+.+++ +|++|++++++...  .   .+...+ +++++++.+|. .++ +|+ ++|+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~--~---~~~~gv-dl~~L~~~~d~~~~l-~~l-~~t~  277 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--I---YNPDGL-NADEVLKWKNEHGSV-KDF-PGAT  277 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--E---EEEEEE-CHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc--c---cCccCC-CHHHHHHHHHhcCEe-ecC-ccCe
Confidence            456 999999999999999999999999 99999999643311  1   111222 56666654443 222 465 5677


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCC-CCCCCCCCeEECCCC----C---
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHV----S---  179 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~-~~l~~~~n~~~tPH~----a---  179 (221)
                      + ++.+.|..||+ .++||++||++||+++ +++|+.+.|.+++     +||.+++ ++|+..+|+++|||+    |   
T Consensus       278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt  349 (419)
T 1gtm_A          278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT  349 (419)
T ss_dssp             E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred             e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence            7 78888888988 6999999999999999 6999999999887     8897654 789999999999999    5   


Q ss_pred             --------------cCCHH--HHHHHHHHHHHHHHH
Q 027577          180 --------------GTTID--LRYAAGVKDMLDRYF  199 (221)
Q Consensus       180 --------------~~t~~--~~~~~~~~~~~~~~~  199 (221)
                                    |.+.|  .++...+.+++.+++
T Consensus       350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence                          33333  555555667766666

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.79  E-value=2.5e-19  Score=158.43  Aligned_cols=130  Identities=17%  Similarity=0.232  Sum_probs=107.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCCCCEEEEeC--CC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PL  102 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~ell~~aDvVv~~~--p~  102 (221)
                      .++.|++|+|+|+|.||+.+++.++.+|++|+++|+++...+.+.+ .|..      ...+++++++++|+|+.++  |.
T Consensus       164 ~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          164 PGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            3789999999999999999999999999999999997644333433 4432      1235678888999999977  54


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCCceEEEeeCCCC-CCCCCCCCCCCCCCeE--ECCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQA--MTPH  177 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~i~~a~lDV~~~-ep~~~~~~l~~~~n~~--~tPH  177 (221)
                      + ++..++.++.++.||++++|||++  +|+                      ||+. ||.+.++|++..+|++  +|||
T Consensus       244 ~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~ph  300 (377)
T 2vhw_A          244 A-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVAN  300 (377)
T ss_dssp             S-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTT
T ss_pred             C-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCC
Confidence            4 677888999999999999999998  332                      6777 8888889999999988  9999


Q ss_pred             CCcCCHH
Q 027577          178 VSGTTID  184 (221)
Q Consensus       178 ~a~~t~~  184 (221)
                      +++.+..
T Consensus       301 l~~~~~~  307 (377)
T 2vhw_A          301 MPASVPK  307 (377)
T ss_dssp             GGGGSHH
T ss_pred             cchhhHH
Confidence            9999866

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.73  E-value=3.8e-18  Score=152.30  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +.++.||||+|+|+|.||+.+|++++++|++|+++|+++.....+...|+... ++++++++||+|+.+++    +.++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc
Confidence            45799999999999999999999999999999999986533333445677654 89999999999998753    67899


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~-vd~~al~~  140 (221)
                      +.+.|+.||+|++|||++||.+ +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99988874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=1.5e-17  Score=148.40  Aligned_cols=106  Identities=14%  Similarity=0.241  Sum_probs=92.3

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +.++.|++|+|+|+|.||+.+|+.|+++|++|+++|+++.....+...|+... ++++++++||+|+++.    .+.+++
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~----gt~~iI  280 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTT----GNDDII  280 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECS----SCSCSB
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECC----CCcCcc
Confidence            46799999999999999999999999999999999997644444555677654 8999999999999743    577889


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVDA  141 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~-vd~~al~~a  141 (221)
                      +.+.|+.||+|++|||++||.+ ||.++|.+.
T Consensus       281 ~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999997 999999764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.67  E-value=1.2e-16  Score=137.25  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=103.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH--HH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~--~~  114 (221)
                      +|||+||+|.||..+|++|...|++|.+|||++.+.+.+.+.|.....++.|+++.||+|++|+|..+..+.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999876667777789998999999999999999999988888777643  36


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      ++.+++|.++||++...+-+...+.+.+++..+.  ++|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999999887  7783

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.66  E-value=1.4e-16  Score=141.80  Aligned_cols=104  Identities=17%  Similarity=0.300  Sum_probs=89.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.....+...|+.. .+++++++++|+|++|    +.+.+++
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a----tgt~~lI  289 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC----TGNKNVV  289 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC----SSCSCSB
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC----CCCcccC
Confidence            4579999999999999999999999999999999998753333445567655 4899999999999995    3577899


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCc-cCHHHHH
Q 027577          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVV  139 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~-vd~~al~  139 (221)
                      +.+.|+.||+|++|||++||.+ +|.++|.
T Consensus       290 ~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          290 TREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             CHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999988 7776663

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.66  E-value=2.3e-16  Score=135.15  Aligned_cols=117  Identities=13%  Similarity=0.113  Sum_probs=100.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      .+||||||+|.||..+|++|...|++|++||+++...+.+.+.|+....++.|+++++|+|++|+|..+....++....+
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            36899999999999999999999999999999887777677788888899999999999999999977777777777788


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      ..++++.++||++...+-+...+.+.+.+..+.  ++|.
T Consensus        85 ~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            999999999999999999999999999999887  6774

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.65  E-value=3.4e-16  Score=133.72  Aligned_cols=97  Identities=15%  Similarity=0.231  Sum_probs=82.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +.++.|+||||||+|.||+.+|+.++++|++|+++|++....+.+.+.|+...  .+++++++++|+|++|+|.     +
T Consensus       150 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  224 (293)
T 3d4o_A          150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----L  224 (293)
T ss_dssp             SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----C
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----H
Confidence            45799999999999999999999999999999999997543333445566542  5788999999999999994     6


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCc
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +++++.++.||+++++||++||..
T Consensus       225 ~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          225 VVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             CBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             HhCHHHHHhcCCCCEEEEecCCCC
Confidence            788889999999999999999754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.65  E-value=4.3e-16  Score=133.40  Aligned_cols=98  Identities=19%  Similarity=0.306  Sum_probs=82.9

Q ss_pred             cccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .+.++.|+||||||+|.||+.+|+.++++|++|++||++....+.+.+.|+..  ..+++++++++|+|++|+|.     
T Consensus       151 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----  225 (300)
T 2rir_A          151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----  225 (300)
T ss_dssp             CSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----
T ss_pred             cCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----
Confidence            35689999999999999999999999999999999999754333333456543  35789999999999999994     


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      ++++++.++.||+++++||++||..
T Consensus       226 ~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            6788889999999999999999854

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.63  E-value=7.9e-17  Score=141.90  Aligned_cols=153  Identities=16%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCcee------cCCHHhhcCCCCEEEEeCCCCh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF------EEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~------~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .++.+++|+|+|.|.||+.+++.++.+|++|+++|+++...+.+.+ .+...      ..+++++++.+|+|+.|++...
T Consensus       162 ~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          162 PGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             TBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            3689999999999999999999999999999999987543333333 34321      2356677889999999998654


Q ss_pred             -hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeE---------E
Q 027577          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA---------M  174 (221)
Q Consensus       105 -~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~---------~  174 (221)
                       .+..++.++.++.|++++++||++-.             .|   |+ +||+  ||.+.++|++..+++.         .
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~  302 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGA  302 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGG
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchh
Confidence             56677888999999999999999832             12   34 8988  6767778899999998         8


Q ss_pred             CCCCCcCC--HH--HHHHHHHHHHHHHHHcCCC
Q 027577          175 TPHVSGTT--ID--LRYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       175 tPH~a~~t--~~--~~~~~~~~~~~~~~~~g~~  203 (221)
                      |||+|+..  .+  .++...+.+++..+..++.
T Consensus       303 ~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~  335 (369)
T 2eez_A          303 VPRTSTFALTNQTLPYVLKLAEKGLDALLEDAA  335 (369)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcChhhhhcChH
Confidence            89988753  33  3444445555666776654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.60  E-value=1.6e-14  Score=124.68  Aligned_cols=158  Identities=11%  Similarity=0.030  Sum_probs=105.5

Q ss_pred             HcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHh-hcCC
Q 027577           18 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLPK   92 (221)
Q Consensus        18 ~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e-ll~~   92 (221)
                      -.+.|.....+ ...++.-++|||||+|.||.++|+.|+..|+  +|++||+++...+.+.+.|+  ....++++ ++++
T Consensus        16 ~~~~~~~~~~~-~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~   94 (314)
T 3ggo_A           16 PRGSHMKNIIK-ILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS   94 (314)
T ss_dssp             --------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGC
T ss_pred             ccccCcCcCCc-hhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhcc
Confidence            34566543322 1234556899999999999999999999999  99999997655555666676  44568888 8999


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC---CCCCCCCCCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYM  169 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e---p~~~~~~l~~~  169 (221)
                      ||+|++|+|... +..++ ++....++++++|++++.......+++.+.+.. +..+ .--++..|   |......|+.-
T Consensus        95 aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~g  170 (314)
T 3ggo_A           95 PDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYEG  170 (314)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTTT
T ss_pred             CCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhcC
Confidence            999999999443 33333 556677999999999987765556667666654 2221 12334333   33344567777


Q ss_pred             CCeEECCCCCc
Q 027577          170 PNQAMTPHVSG  180 (221)
Q Consensus       170 ~n~~~tPH~a~  180 (221)
                      ..+++||+-++
T Consensus       171 ~~~il~~~~~~  181 (314)
T 3ggo_A          171 KKVILTPTKKT  181 (314)
T ss_dssp             CEEEECCCTTS
T ss_pred             CEEEEEeCCCC
Confidence            78999998554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.59  E-value=4.1e-15  Score=128.01  Aligned_cols=136  Identities=13%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             HHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC--CChhHHHhcCceecCCHHhhc
Q 027577           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQLEKETGAKFEEDLDTML   90 (221)
Q Consensus        14 ~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~--~~~~~~~~~g~~~~~~l~ell   90 (221)
                      ++..+.+.|.....-........++|||||+|.||..+|+.|...|+ +|.+||+++  ...+.+.+.|+....++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            45667777764432122334456899999999999999999999999 999999963  444555667888888999999


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC--CceEEEee
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGD  153 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g--~i~~a~lD  153 (221)
                      ++||+|++|+|...... .+ .+....++++++|||++...+....++.+.+.+.  .+.  .+|
T Consensus        82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd  142 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAA  142 (312)
T ss_dssp             HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEE
T ss_pred             hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEe
Confidence            99999999999655443 22 5677889999999999999999999999988876  444  455

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.59  E-value=1.5e-15  Score=130.30  Aligned_cols=120  Identities=14%  Similarity=0.079  Sum_probs=100.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++..++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|....++.++..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            46678999999999999999999999999999999865555555668887889999999999999999976667776642


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +.+..++++.++||+++..+.+...+.+.+.+..+.  ++|.
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            234557899999999999999999999999887776  5563

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.59  E-value=1.4e-14  Score=122.26  Aligned_cols=141  Identities=10%  Similarity=0.042  Sum_probs=103.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCce--ecCCHHhhcC-CCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ++|+|||+|.||..+|+.|...|+  +|++||+++...+.+.+.|+.  ...+++++++ ++|+|++|+|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999998  999999976544555556663  3457888899 999999999933 3444443


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC---CCCCCCCCCCCCCeEECCCCCcC
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYMPNQAMTPHVSGT  181 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e---p~~~~~~l~~~~n~~~tPH~a~~  181 (221)
                       +....++++++|++++++.....+.+.+.+.++.+.  ..-++..|   |....++++...+++++||.++.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~  150 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence             456678999999999988766667788888764222  12233333   33345567777789999998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.59  E-value=2.9e-15  Score=129.37  Aligned_cols=119  Identities=20%  Similarity=0.168  Sum_probs=100.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ....++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|.....+.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            45678999999999999999999999999999999765555555668887889999999999999999966666655532


Q ss_pred             -HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          113 -DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       113 -~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                       +.+..++++.+|||++++.+.+.+.+.+.+.+..+.  .+|
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~  147 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLD  147 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence             566779999999999999999999999999887776  455

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.58  E-value=5.3e-15  Score=126.33  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++ +|+|++|+|....++.++ .+..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999999999999887777777778888889999999 999999999666666666 6677


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ..++++.++||+++..+...+.+.+.+.+..+.  .+|
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  128 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVD  128 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence            889999999999999999899999999887666  455

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.58  E-value=5.9e-15  Score=126.81  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=101.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc-
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-  110 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i-  110 (221)
                      ....-++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....++++++++||+|++|+|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            3455689999999999999999999999999999998766666677788888899999999999999999655666555 


Q ss_pred             -hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          111 -DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       111 -~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                       ..+.+..++++.+|||+++..+...+.+.+.+.+..+.  .+|
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~  138 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE  138 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence             24556788999999999999998889999999887666  455

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.57  E-value=9e-15  Score=124.08  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|....++.++.  .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            789999999999999999999999999999987666666677888888999999999999999996666666652  556


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ...+++++++||+++..+.+.+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE  118 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence            7789999999999999998899999999887666  455

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.55  E-value=9.9e-15  Score=128.09  Aligned_cols=121  Identities=14%  Similarity=0.183  Sum_probs=101.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCC---CEEEEeCCCChhhhhcc
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC---DIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~a---DvVv~~~p~~~~t~~~i  110 (221)
                      +.+++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++.+   |+|++|+|.. .+..++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567999999999999999999999999999999986555556666787778999999888   9999999965 666655


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                       .+....++++.+|||++++...+...+.+.+.+..+......|+.
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence             567788999999999999999999999999999888744444443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.54  E-value=9.4e-15  Score=123.98  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=97.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....++++++++||+|++|+|..+.++.++.  .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            579999999999999999999999999999987666666667888888999999999999999996556666552  455


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +..++++.++||++++.+.+.+.+.+.+.+..+.  .+|
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~  118 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLE  118 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEE
Confidence            6778999999999999998889999998887665  455

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.53  E-value=1.3e-14  Score=124.19  Aligned_cols=116  Identities=16%  Similarity=0.059  Sum_probs=96.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhcCCCCEEEEeCCCChhhhhcch--H
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFD--K  112 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~  112 (221)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|... ..++++++++||+|++|+|.....+.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            47899999999999999999999999999999765555556667765 67899999999999999996555655542  4


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +....+++++++||+++..+...+.+.+.+.+..+.  .+|
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~  125 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD  125 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            456778999999999999988888999999887665  455

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.51  E-value=5.9e-14  Score=118.95  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhcCc--eecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -++|||||+|.||..+|+.|...  |++|++||+++...+.+.+.|.  ....+++++++++|+|++|+|.. ....++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH-
Confidence            36899999999999999999866  6899999997544444445565  34567888889999999999933 234444 


Q ss_pred             HHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee---CCCC---CCCCCCCCCCCCCCeEECCCCCcCC
Q 027577          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD---VWNP---QPAPKDHPWRYMPNQAMTPHVSGTT  182 (221)
Q Consensus       112 ~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD---V~~~---ep~~~~~~l~~~~n~~~tPH~a~~t  182 (221)
                      .+.... ++++++|++++.......+.+.+.+.+..+.  .++   ++..   .|......++.-..++++||.++..
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~  159 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP  159 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence            345566 8999999999887766667787777652333  233   2221   3444445677777799999987643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.50  E-value=6.4e-14  Score=120.90  Aligned_cols=136  Identities=14%  Similarity=0.009  Sum_probs=94.6

Q ss_pred             HHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCC-------ChhHHHhcCceecC
Q 027577           13 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-------DPQLEKETGAKFEE   84 (221)
Q Consensus        13 ~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~-------~~~~~~~~g~~~~~   84 (221)
                      ++.+.+.+.|...-.   ... ..++|||||+|.||..+|+.|...| ++|++||+++.       ..+.+.+.|+  ..
T Consensus         5 ~~~~~~~~~~~~~~~---~~~-M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~   78 (317)
T 4ezb_A            5 HHHSSGVDLGTENLY---FQS-MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EP   78 (317)
T ss_dssp             ----------CCCHH---HHT-SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EE
T ss_pred             cccccccccCcccCc---ccc-cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CC
Confidence            344555566764321   011 2479999999999999999999999 99999998752       1222334466  45


Q ss_pred             -CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           85 -DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        85 -~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                       ++++++++||+|++|+|.......+  .+....++++.+|||+++..+...+.+.+.+.+..+.....-|+.
T Consensus        79 ~s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g  149 (317)
T 4ezb_A           79 LDDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMA  149 (317)
T ss_dssp             ESSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECS
T ss_pred             CCHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCC
Confidence             7889999999999999965544432  567788999999999999999999999999988766532223444

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.48  E-value=3.6e-14  Score=126.37  Aligned_cols=139  Identities=19%  Similarity=0.266  Sum_probs=100.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++.|++|+|||+|.||+.+++.++.+|+ +|+++||+.... +.+...|...  ..++.+++..+|+|+.|+|.+   ..
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~---~~  240 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP  240 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC---Cc
Confidence            5889999999999999999999999999 899999976433 4455566653  246778888999999998743   34


Q ss_pred             cchHHHHhc--CC----CCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEE--CCCCCc
Q 027577          109 MFDKDRIAK--MK----KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM--TPHVSG  180 (221)
Q Consensus       109 ~i~~~~~~~--mk----~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~--tPH~a~  180 (221)
                      +++.+.++.  ||    ++.++||++                             +|.+.+++++++||+++  +||+++
T Consensus       241 ~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d~d~l~~  291 (404)
T 1gpj_A          241 VIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRTIDDLRV  291 (404)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEEHHHHHH
T ss_pred             eecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEeHhhHHH
Confidence            565556655  32    344555543                             36555678999999999  999998


Q ss_pred             CCHHH------------HHHHHHHHHHHHHHcCCC
Q 027577          181 TTIDL------------RYAAGVKDMLDRYFKGED  203 (221)
Q Consensus       181 ~t~~~------------~~~~~~~~~~~~~~~g~~  203 (221)
                      .+.+.            .+.....+++..|+.+.+
T Consensus       292 ~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          292 IARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88761            222233455667776543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.47  E-value=5.6e-13  Score=113.01  Aligned_cols=132  Identities=12%  Similarity=0.086  Sum_probs=99.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-------------------------CceecCCHHhhcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------------------GAKFEEDLDTMLP   91 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------------------------g~~~~~~l~ell~   91 (221)
                      ++|+|||+|.||..+|+.+...|++|++||+++...+.+.+.                         .+....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999976433322221                         1345678899999


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n  171 (221)
                      +||+|+.++|.+.+....+..+....+++++++++.+.+  +...++.+.+... -...++..+.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            999999999977667666667778889999999966554  3567787777543 3445666542        3455677


Q ss_pred             eEECCCCC
Q 027577          172 QAMTPHVS  179 (221)
Q Consensus       172 ~~~tPH~a  179 (221)
                      +.++||-.
T Consensus       154 vevv~~~~  161 (283)
T 4e12_A          154 AEVMGTTK  161 (283)
T ss_dssp             EEEEECTT
T ss_pred             EEEEeCCC
Confidence            88899854

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.43  E-value=2.7e-13  Score=123.19  Aligned_cols=120  Identities=12%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc---C--ceecCCHHhhcC---CCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g--~~~~~~l~ell~---~aDvVv~~~p~~~~t~  107 (221)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.   +  +....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            4689999999999999999999999999999987554444333   2  334578888876   5999999999777777


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      .++ .+....|++|.+|||++++...+...+.+.+.+..+.....-|..
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            766 567788999999999999999999999999998888744444443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.42  E-value=4.5e-13  Score=121.80  Aligned_cols=115  Identities=11%  Similarity=0.115  Sum_probs=94.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----CceecCCHHhhcCC---CCEEEEeCCCChh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~~~~~l~ell~~---aDvVv~~~p~~~~  105 (221)
                      ..+.++|||||+|.||+.+|+.|...|++|.+|||++...+.+.+.    |+....+++++++.   +|+|++++|....
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            4667899999999999999999999999999999976444444333    67777889998876   9999999997667


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ++.++ ++....++++.+|||++.|...+...+.+.+.+..+.
T Consensus        92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            77777 4567789999999999999988888898888876665

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.42  E-value=3.1e-13  Score=114.79  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=92.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|+|||+|.||..+++.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|....+..++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999976544555555777778899999999999999996655665553  345


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ...++++++||+++.+...+.+.+.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5778999999999999887788898888875554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.41  E-value=8e-13  Score=115.55  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +|.||||+|+|+|+||+.+|+.++.+|++|+++|++....+..+..+++.+ +.++++. +||+++.|     .+.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhcC
Confidence            799999999999999999999999999999999986432334455677665 6788887 89999854     4678899


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .+.++.|| ..+|+|.+++.+.++++ .+.|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999777 5889988776

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.40  E-value=4.2e-13  Score=114.04  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=91.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|+|||+|.||+.+++.|...|++|.+||+++...+...+.|+....+++++++++|+|++|+|....+..++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999976444444445777777899999999999999996666666664  356


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ...++++++||+++.|...+.+.+.+.+.+..+.
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            6778999999999998877788888888775444

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.40  E-value=4.9e-13  Score=113.23  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH--HH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~--~~  114 (221)
                      ++|+|||+|.||+.+|+.|...|++|.+|| ++...+.+.+.|+....+++++++++|+|++|+|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 776666555557776778999999999999999965555555532  44


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ...++++++||+++.+...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5678899999999999878888899988875444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.39  E-value=4.1e-12  Score=106.84  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|+|||+|.||+.+++.|...|++|.+||+++...+.+.+.|+.  ...+++++ +++|+|++++|. ..+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            589999999999999999999999999999876444444555652  35678888 999999999993 3344444 355


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC---CCCCCCCCCCCCCCeEECCCCCc
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---QPAPKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~---ep~~~~~~l~~~~n~~~tPH~a~  180 (221)
                      ...++++++||+++.......+.+.+.+.  ++.+ ..-++..   .|....+.++.-+.++++|+-++
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~-~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~  143 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIG-GHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEE-EEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEee-cCcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence            66789999999997766555555555443  2221 2233321   23333445666667888997654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-12  Score=119.44  Aligned_cols=112  Identities=11%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCC---CCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPK---CDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~---aDvVv~~~p~~~~t~  107 (221)
                      ..+|||||+|.||..+|+.|...|++|.+|||++...+.+.+     .|+....+++++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            568999999999999999999999999999998755554444     467767789998876   999999999766777


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .++ ++....+++|.+||+++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            776 4567789999999999999888888898888876555

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.39  E-value=7.1e-13  Score=117.94  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC---------------------------C
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE---------------------------D   85 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~   85 (221)
                      ++.|++|+|+|+|.||..+++.++.+|++|+++|+++...+.++++|...+.                           +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            5789999999999999999999999999999999987655556667765432                           3


Q ss_pred             HHhhcCCCCEEEEe--CCCChhhhhcchHHHHhcCCCCCEEEEcC--CCCccCH
Q 027577           86 LDTMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDT  135 (221)
Q Consensus        86 l~ell~~aDvVv~~--~p~~~~t~~~i~~~~~~~mk~ga~lIn~s--rg~~vd~  135 (221)
                      ++++++.+|+|+.|  +|. ..+..+++++.++.|++|++|||++  ||+.+++
T Consensus       249 l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            66778889999999  443 2355778889999999999999999  8876644

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=7.4e-13  Score=115.44  Aligned_cols=140  Identities=14%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC----CCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP----KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~----~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -++|||||+|.||.++|+.|+..|++|++||+++...+.+.+.|+....+++++++    ++|+|++|+|. ..+..++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence            36899999999999999999999999999999765556666778876678888776    47999999993 34555552


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEE-eeCCCCC---CCCCCCCCCCCCCeEECCCCCc
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~-lDV~~~e---p~~~~~~l~~~~n~~~tPH~a~  180 (221)
                       +. ..++++++|+|++..+....+++.+.+.  ...... --++..|   |......|+.-..+++||+-..
T Consensus        87 -~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~  155 (341)
T 3ktd_A           87 -AV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF  155 (341)
T ss_dssp             -HH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT
T ss_pred             -HH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCC
Confidence             33 3358999999998765433334443332  122111 2233332   2224456777778999998543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.37  E-value=5.1e-13  Score=113.28  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH--HH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~--~~  114 (221)
                      ++|+|||+|.||+.+++.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|....+..++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            4799999999999999999999999999999765555555567777778999999999999999866666665543  24


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      +..+++++++|+++...+.+.+.+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            4568899999998777776667777777653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=111.91  Aligned_cols=112  Identities=14%  Similarity=0.200  Sum_probs=90.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH--HH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~--~~  114 (221)
                      ++|+|||+|.||+.+|+.|...|++|.+||+++...+.+.+.|+....+++++++++|+|++|+|....+..++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999776555555667777778989999999999999965555555533  23


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +..++++.+||+++.+.....+.+.+.+....+.
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4678999999999998777778888888665444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.36  E-value=1.6e-12  Score=114.45  Aligned_cols=95  Identities=19%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-------------------------CCHH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------------------------EDLD   87 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-------------------------~~l~   87 (221)
                      .+.++||+|||+|.||..+|+.++.+|++|+++|+++...+.+.+.|.+..                         .+++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            578999999999999999999999999999999998766666666666533                         2467


Q ss_pred             hhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           88 TMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        88 ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.++++|+|+.++  |. ..+..+++++.++.||+|++|||++
T Consensus       261 e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEe
Confidence            8899999999875  43 2345678999999999999999997

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.36  E-value=9.5e-13  Score=111.02  Aligned_cols=109  Identities=12%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                      ++|+|||+|.||..+++.|.. |++|.+||+++...+.+.+.|+.... ++++++++|+|++|+|....+..++ ++...
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 99999999976544444444555554 7788889999999999554455554 45567


Q ss_pred             cCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       117 ~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .+++++++|+++.+...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            78999999999998888888899988875443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.35  E-value=5.7e-13  Score=110.71  Aligned_cols=97  Identities=13%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             cccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC--------------hhH-HHhcCceecCCHHhhcCCCC
Q 027577           30 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD--------------PQL-EKETGAKFEEDLDTMLPKCD   94 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~--------------~~~-~~~~g~~~~~~l~ell~~aD   94 (221)
                      ...++.+++|||||+|.||+++|+.|...|++|.+||+++..              .+. ....+.....++++++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            356899999999999999999999999999999999997532              111 12234444568889999999


Q ss_pred             EEEEeCCCChhhhhcchHHH-HhcCCCCCEEEEcCC
Q 027577           95 IVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNAR  129 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~-~~~mk~ga~lIn~sr  129 (221)
                      +|++|+|..... ..+. +. ...+ ++++||+++.
T Consensus        93 vVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           93 LVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC
T ss_pred             EEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC
Confidence            999999954433 2332 22 2334 7999999993

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.34  E-value=5e-12  Score=107.95  Aligned_cols=137  Identities=13%  Similarity=0.105  Sum_probs=87.6

Q ss_pred             HHHHHHHcCCCccCcccCcccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc
Q 027577           12 PGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML   90 (221)
Q Consensus        12 ~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell   90 (221)
                      ....++++..|....       ...++|+||| +|.||.++|+.|+..|++|.++|+++.             .+.++++
T Consensus         4 ~~~~~~~~~~~~~~~-------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~   63 (298)
T 2pv7_A            4 ESYANENQFGFKTIN-------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESIL   63 (298)
T ss_dssp             ---------CCCCSC-------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHH
T ss_pred             hHHhhhhccCccccC-------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHh
Confidence            344566777795321       1356899999 999999999999999999999998642             1467788


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CCCCCCCC
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYM  169 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~-~~~~l~~~  169 (221)
                      ++||+|++|+|.. .+..++ .+....++++++|++++.......+++.+.+   ...  .+.   ..|.. +..+++.-
T Consensus        64 ~~aDvVilavp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~--~v~---~hP~~g~~~~~~~g  133 (298)
T 2pv7_A           64 ANADVVIVSVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA--VLG---LHPMFGADIASMAK  133 (298)
T ss_dssp             TTCSEEEECSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE--EEE---EEECSCTTCSCCTT
T ss_pred             cCCCEEEEeCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC--EEe---eCCCCCCCchhhcC
Confidence            9999999999943 355555 3456678999999999876554344444432   122  222   22321 12245555


Q ss_pred             CCeEECCCC
Q 027577          170 PNQAMTPHV  178 (221)
Q Consensus       170 ~n~~~tPH~  178 (221)
                      ..+++|||-
T Consensus       134 ~~~~l~~~~  142 (298)
T 2pv7_A          134 QVVVRCDGR  142 (298)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEecCC
Confidence            578899974

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.33  E-value=2.7e-12  Score=116.39  Aligned_cols=117  Identities=14%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----CceecCCHHhhcCC---CCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~~~~~l~ell~~---aDvVv~~~p~~~~t~~~  109 (221)
                      ++|||||+|.||+.+|+.|...|++|.+||+++...+.+.+.    ++....+++++++.   +|+|++++|....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            589999999999999999999999999999976444433332    67777789998776   99999999976666666


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      + ++....+++|.+||+++.+...+...+.+.+.+..+.....-|
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv  129 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGV  129 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCC
Confidence            6 4566788999999999999888888888888776565333333

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.33  E-value=7.1e-12  Score=110.76  Aligned_cols=99  Identities=22%  Similarity=0.300  Sum_probs=81.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (221)
                      ++.|++|+|+|+|.+|..+++.++.+|++|+++|+++...+.++++|....  +.                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999999999999999999999999999999998766666666776543  11                         


Q ss_pred             --HHhhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcC--CCCc
Q 027577           86 --LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAI  132 (221)
Q Consensus        86 --l~ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~s--rg~~  132 (221)
                        ++++++.+|+|+.|+  |..+ +..++.++.++.||++++|||++  ||+.
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~  300 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN  300 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence              677889999999887  4332 34678889999999999999999  7653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.33  E-value=2.8e-12  Score=116.61  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=93.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhc---CCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell---~~aDvVv~~~p~~~~t~~  108 (221)
                      ++|||||+|.||+.+|..|...|++|.+||+++...+.+.+     .++....++++++   +++|+|++++|....+..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            57999999999999999999999999999997655444444     5676677898887   489999999996666776


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      ++. +....++++.+||+++.+...+...+.+.+.+..+.....-|
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv  127 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCC
Confidence            664 566778999999999999888888888888776555333333

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.33  E-value=4.1e-12  Score=112.71  Aligned_cols=100  Identities=20%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----------------------------
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----------------------------   83 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------   83 (221)
                      .+.+.||+|+|+|.||..+++.++.+|++|+++|+++...+.+++.|....                             
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            478999999999999999999999999999999998766566666665421                             


Q ss_pred             CCHHhhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcC--CCCcc
Q 027577           84 EDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIM  133 (221)
Q Consensus        84 ~~l~ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~s--rg~~v  133 (221)
                      .+++++++++|+||.++  |.. ....+++++.++.||+|++|||+|  +|+.+
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            15678889999999875  432 356678999999999999999998  55544

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.29  E-value=3.7e-12  Score=110.73  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=94.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .+.+++|+|||+|.||+++|+.|+..|++|++++++... .+.+.+.|+... ++++++++||+|++|+|... ...++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            578999999999999999999999999999999987643 345556787765 88899999999999999432 344444


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCC---CCC---CCCeEECCCCCc
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP---WRY---MPNQAMTPHVSG  180 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~---l~~---~~n~~~tPH~a~  180 (221)
                      .+....++++++|++++ |  +..  ..+.+.    ....+||+...|..+.+.   ++.   -.++++|||-..
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~  156 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDA  156 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECS
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCC
Confidence            35566799999999874 3  222  222111    112344554455333322   222   456888998643

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.29  E-value=6.6e-12  Score=114.02  Aligned_cols=117  Identities=14%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcC---CCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLP---KCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g-------~~~~~~l~ell~---~aDvVv~~~p~~~~  105 (221)
                      ++|||||+|.||+.+|..|...|++|.+||+++...+.+.+ .|       +....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            47999999999999999999999999999997544333332 24       556678888876   59999999997666


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +..++ ++....++++.+||+++.|...+...+.+.+.+..+.....-|
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv  129 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI  129 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeec
Confidence            66666 4566778999999999999888888888888876655333333

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.27  E-value=6.2e-12  Score=105.15  Aligned_cols=100  Identities=15%  Similarity=0.233  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHH-hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ++.+++|+|||+|.||+.+++.+...|++ |.+||+++...+.+. ..++....+++++++++|+|++++|.. ....++
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~   85 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL   85 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH
Confidence            45678999999999999999999988998 899998754433333 347777778999999999999999943 333333


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccC
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                       ++....+++++++|+++.|...+
T Consensus        86 -~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           86 -QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             -HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             -HHHHhhcCCCcEEEECCCCCchH
Confidence             34556788999999999987654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.26  E-value=5.3e-12  Score=105.34  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCC--CCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|||||+|.||..+|+.|...|++|+++|+.  +...+.+.+.|+.  .+++++++++|+|++|+|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            58999999999999999999999999999872  2222333345666  57888899999999999965444443  355


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ...+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            666776  99999888777777888887653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.23  E-value=2.6e-11  Score=109.68  Aligned_cols=96  Identities=20%  Similarity=0.267  Sum_probs=80.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +..|.||+++|+|+|.||+.+|+.|+++|++|+++|+++.....+...++.. .+++++++.+|+|+.+..    +.+++
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG----~~~vl  334 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTG----NKDII  334 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSS----CSCSB
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCC----Chhhh
Confidence            3569999999999999999999999999999999998754444444556654 488999999999997654    45678


Q ss_pred             hHHHHhcCCCCCEEEEcCCCC
Q 027577          111 DKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..+.+..||++++|+|++++.
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSSTT
T ss_pred             hHHHHHhcCCCeEEEEcCCCC
Confidence            888999999999999999983

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.23  E-value=4.4e-11  Score=102.12  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-------CceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      -..|+|||||+|.||..+|..+. .|++|++||+++...+.+.+.       ++....++++ +++||+|+.|+|.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            45789999999999999999999 999999999976544444443       5666667876 89999999999988876


Q ss_pred             hhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS  179 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a  179 (221)
                      +..+-.+ ++.+ ++++++ |+|.-.   ...+.+.+. ......++..|.  |.+      ..+-+.++|+-.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv~------~~~lveiv~g~~  147 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PPH------VMPLVEIVISRF  147 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--STT------TCCEEEEEECTT
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--ccc------cCCEEEEECCCC
Confidence            6665444 5566 999885 776643   345544443 223345666554  432      234566666544

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.87  E-value=9.1e-13  Score=106.65  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      +.+++|+|||+|+||+.+|+.|...|++|.+|+|++. .+.+...++... +++++++++|+|++++|.. .+..++  +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E   91 (201)
Confidence            6788999999999999999999999999999998764 333333455544 7888899999999999953 455555  2


Q ss_pred             HHhcCCCCCEEEEcCCCCcc
Q 027577          114 RIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~~v  133 (221)
                       +..++++++|||+++|-..
T Consensus        92 -l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 -LADSLKGRVLIDVSNNQKM  110 (201)
Confidence             3446789999999999754

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.22  E-value=1.1e-11  Score=111.80  Aligned_cols=97  Identities=16%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             ccCCCC-CEEEEEccCHHHHHHHHHHccC------CCeEEEEcCC-CCChhHHHhcCcee----cCCHHhhcCCCCEEEE
Q 027577           31 AYDLEG-KTVGTVGCGRIGKLLLQRLKPF------NCNLLYHDRV-KMDPQLEKETGAKF----EEDLDTMLPKCDIVVV   98 (221)
Q Consensus        31 ~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~-~~~~~~~~~~g~~~----~~~l~ell~~aDvVv~   98 (221)
                      ...|.| |||||||+|+||.++|+.|+..      |++|++.+++ ....+.+.+.|+..    ..++++++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            356899 9999999999999999999988      9998766554 44556666778764    2578999999999999


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ++|..... .++. +.+..|++|++ |..+.|
T Consensus       128 aVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          128 LISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             CSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            99965443 4554 68899999998 566677

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.22  E-value=6.4e-11  Score=100.30  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .++|||||+|+||.++++.+...|+   +|.+||+++...+.+.+ .|+....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4789999999999999999999998   89999998755544444 4888777899999999999999983 3333333 


Q ss_pred             HHHHhc-CCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       112 ~~~~~~-mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ++.... ++++++||+++.|-  ..+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            344445 68888999988774  45677777765

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.19  E-value=6.9e-11  Score=99.00  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCCCCEEEEeCCCCh--hhhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE--KTRG  108 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~--~t~~  108 (221)
                      .++.| +++|||+|.||+++++.|...|++|.++||+.... +.++..+.. ..+++++ +++|+|++|+|...  .+..
T Consensus       113 ~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          113 IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            46889 99999999999999999999999999999975332 233344555 4578888 99999999999652  2223


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .+.   ...++++++++|++.+.. +. .|.+++++..+.
T Consensus       190 ~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~  224 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLK  224 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCE
T ss_pred             CCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCE
Confidence            343   456899999999998743 33 477777765444

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.19  E-value=9.4e-11  Score=101.06  Aligned_cols=107  Identities=12%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCC--ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM--DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      ...++|+|||+|.||..+|..|...|    .+|.+|||++.  ..+.+.+.|+....+..++++++|+|++|+| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            44578999999999999999999888    78999999764  3444556688777788899999999999999 34444


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      .++ .+....++++++||+++.|-  ..+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            444 34556788899999998764  34566666664

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.17  E-value=2.6e-11  Score=100.57  Aligned_cols=104  Identities=17%  Similarity=0.319  Sum_probs=79.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ++|+|||+|+||..+++.|...|+    +|.+||+++...+.+. ..|+....+++++++++|+|++|+|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            689999999999999999999998    9999999765444443 45888888999999999999999973 3334444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ++....+++++++|++..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            44556688899999877664  45566666654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.17  E-value=6e-11  Score=100.21  Aligned_cols=110  Identities=14%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChh--hhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK--TRG  108 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~--t~~  108 (221)
                      .++.|++|+|||+|.||+++++.|...|++|.++||+....+ .++..++....+++++++++|+|++|+|....  +..
T Consensus       125 ~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~  204 (275)
T 2hk9_A          125 PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPE  204 (275)
T ss_dssp             TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            367899999999999999999999999999999999753322 22334666555888899999999999996532  122


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .++   ...++++++++|++.   . ...+.+..++..+.
T Consensus       205 ~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~~  237 (275)
T 2hk9_A          205 IFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGAK  237 (275)
T ss_dssp             SSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTCE
T ss_pred             CCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcCE
Confidence            343   456899999999988   2 33455555544333

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.16  E-value=3.3e-11  Score=109.07  Aligned_cols=110  Identities=12%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHH---------------h----cCceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK---------------E----TGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~---------------~----~g~~~~~~l~ell~~aDv   95 (221)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...               .    .++....++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            6899999999999999999887  899999998753322211               1    245555688888999999


Q ss_pred             EEEeCCCChhhhh-----------c--chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577           96 VVVNTPLTEKTRG-----------M--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus        96 Vv~~~p~~~~t~~-----------~--i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      |++|+|......+           +  ..++....++++++||+.|+..+-..+.+.+.+.+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~  149 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANT  149 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhC
Confidence            9999984333222           1  1234566789999999999988877888888888754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.15  E-value=6.2e-11  Score=100.28  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=72.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ++|+|||+ |.||+.+|+.|...|++|.+||+++...+.+.+.|+... +..++++++|+|++++|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            69999999 999999999999999999999997544444444565543 67788899999999999432 44444 4556


Q ss_pred             hcCCCCCEEEEcCCCC
Q 027577          116 AKMKKGVLIVNNARGA  131 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~  131 (221)
                      ..++++++||+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6788999999988875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.13  E-value=6e-11  Score=96.62  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ..++|+|||+|.||+.+++.|...|++|.++|+++...+.+.+.++... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            4579999999999999999999999999999987543333333466654 788899999999999993 34444443   


Q ss_pred             HhcCCCCCEEEEcCCCCccC
Q 027577          115 IAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd  134 (221)
                      +..+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            22223799999999987543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.13  E-value=1.5e-10  Score=88.16  Aligned_cols=89  Identities=12%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      +++|+|||.|.||+.+++.|...|++|.++|+++...+ .++..+..  ...+++++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            89999999999999999999999999999999754333 34445543  4578899999999999999954   233443


Q ss_pred             HHHhcCCCCCEEEEcCCC
Q 027577          113 DRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg  130 (221)
                         +.++++.+++|++..
T Consensus        98 ---~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNP  112 (144)
T ss_dssp             ---GGCCTTCEEEECCSS
T ss_pred             ---HHcCCCCEEEEccCC
Confidence               457889999998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.12  E-value=1.7e-10  Score=101.18  Aligned_cols=108  Identities=22%  Similarity=0.277  Sum_probs=83.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcc
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i  110 (221)
                      +|.||||+|+|+|+||+.+|+.|.++|++|+++|++....+ .+++.+...+ +.++++. +||+++.|.     +.+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence            69999999999999999999999999999999998653222 3344566655 5667766 899999875     35577


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +.+.++.|+ ..+|++.+++.+.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            777778884 5788999999888755 45666666554

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.12  E-value=6.4e-10  Score=94.76  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=80.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------hc------------------CceecCCHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET------------------GAKFEEDLD   87 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~------------------g~~~~~~l~   87 (221)
                      ++|+|||+|.||..+|..+...|++|++||+++...+...           +.                  .+....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999753322210           11                  234456888


Q ss_pred             hhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      +.+++||+|++++|...+....+-.+....++++++|+..+.+  +....+.+.+... -...++..+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence            8899999999999966544444444555678889999866555  3345565554321 1234555443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.12  E-value=3.1e-10  Score=94.40  Aligned_cols=101  Identities=12%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ++|||||+|.||+.+++.|...|.+|.+||+++...+.+. ..|+....+++++++++|+|++|+| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            5899999999999999999999999999999754433333 3477767789999999999999999 3332     3344


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ..++++.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55678999999976643  45566666544

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.11  E-value=3.2e-10  Score=101.52  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh------------------cCceecCCHHhhcCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLPK   92 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~------------------~g~~~~~~l~ell~~   92 (221)
                      +++..-++|+|||+|.||..+|..|.. |++|++||+++...+...+                  .++....++++++++
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~  109 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN  109 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC
Confidence            456667899999999999999999988 9999999997643332222                  135566788999999


Q ss_pred             CCEEEEeCCCChh-------hhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577           93 CDIVVVNTPLTEK-------TRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus        93 aDvVv~~~p~~~~-------t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                      ||+|++|+|...+       +..+.  .+.... +++++++|+.|...+-..+.+.+.+.+..+
T Consensus       110 aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          110 ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             CSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            9999999995421       11221  244556 899999999999888888889888876544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.10  E-value=2.7e-10  Score=92.34  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .++..++|+|||+|.||..+|+.|...|++|.+||+++.                  .++++|+|++++| +..+..++.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~   75 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAK   75 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHH
Confidence            468899999999999999999999999999999998643                  4678999999999 555555553


Q ss_pred             HHHHhcCCCCCEEEEcCCCCc
Q 027577          112 KDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~  132 (221)
                       +....++ ++++|++++|-.
T Consensus        76 -~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           76 -QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             -HTHHHHT-TSEEEECCCCBC
T ss_pred             -HHHHhcC-CCEEEEECCCCC
Confidence             3344567 999999999754

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.09  E-value=1.5e-10  Score=99.52  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhHH-HhcC--ceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~-~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ...++|||||+|.||+.+++.+.. +|+ +|.+||+++...+.+ +..+  +..+.+++++++++|+|++|+|..   ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence            457899999999999999999865 477 899999976443333 3335  666789999999999999999943   44


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ++..   ..+++|++|++++....-. ..+.+.+.+...  ..+|
T Consensus       210 v~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          210 ILFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             CBCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             ccCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            5544   5689999999998766532 444444433333  3677

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.08  E-value=9.3e-10  Score=99.02  Aligned_cols=109  Identities=14%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCCCCE
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDv   95 (221)
                      .-+|+|||+|.||..+|..|...|++|++||+++...+...+                    .++...+++++.+++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            458999999999999999999999999999998765544332                    124556789899999999


Q ss_pred             EEEeCCCChh----------hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577           96 VVVNTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus        96 Vv~~~p~~~~----------t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      |++|+|....          .+.. -+.....+++++++|+.|.-.+-..+.+.+.+.+.
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v-~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAA-AREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHH-HHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEcCCCCccccCCccHHHHHHH-HHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            9999883321          2222 24567789999999999976666667777777653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.07  E-value=3.4e-09  Score=95.58  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=90.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--------hHHHhcC-------------ceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--------QLEKETG-------------AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--------~~~~~~g-------------~~~~~~l~ell~~aDv   95 (221)
                      ++|+|||+|.||..+|..+...|++|++||+++...        +.+.+.|             +....+++ .+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            689999999999999999999999999999975411        0111112             23456775 6899999


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEEC
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~t  175 (221)
                      ||.++|.+.+.+..+-.+..+.++++++|++.+.+  +....+.+.+.. .-...++..|.  |.+      ..+-+.++
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv  202 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEII  202 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEE
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEE
Confidence            99999977766665656777889999999755444  445666665543 23456777665  432      22335566


Q ss_pred             CCCC
Q 027577          176 PHVS  179 (221)
Q Consensus       176 PH~a  179 (221)
                      |+-.
T Consensus       203 ~g~~  206 (460)
T 3k6j_A          203 YGSH  206 (460)
T ss_dssp             CCSS
T ss_pred             eCCC
Confidence            6543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.05  E-value=2.1e-10  Score=95.47  Aligned_cols=100  Identities=12%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|+|||+|.||..+|+.|...| ++|.+||+++...+.+.+ .|+....++++++ ++|+|++++| ......++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            58999999999999999999889 999999997544443333 4777667788888 9999999999 44443333    


Q ss_pred             HhcCC-CCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          115 IAKMK-KGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       115 ~~~mk-~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                       ..+. ++++||+++.|--  .+.+.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence             3332 2899999966543  36677776653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.05  E-value=3.2e-10  Score=101.62  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV   96 (221)
                      ++|+|||+|.||..+|..|...|++|+++|+++...+...+                   .+ +....++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            58999999999999999999999999999987543333222                   22 45566888889999999


Q ss_pred             EEeCCCChh---------hhhcchHHHHhcCCC---CCEEEEcCCCCccC-HHHHHHHHHh
Q 027577           97 VVNTPLTEK---------TRGMFDKDRIAKMKK---GVLIVNNARGAIMD-TQAVVDACSS  144 (221)
Q Consensus        97 v~~~p~~~~---------t~~~i~~~~~~~mk~---ga~lIn~srg~~vd-~~al~~al~~  144 (221)
                      ++|+|....         ....+ ++....+++   +++||+.|...+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999984433         33322 345556788   99999998766655 5667777765

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.05  E-value=6.2e-10  Score=100.33  Aligned_cols=107  Identities=14%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDvV   96 (221)
                      ++|+|||+|.||..+|..|...|++|++||+++...+...+                    .++...+++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            69999999999999999999999999999997543332222                    1244557889999999999


Q ss_pred             EEeCCCCh---------hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           97 VVNTPLTE---------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        97 v~~~p~~~---------~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ++|+|...         ..... -++....+++++++|+.|.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v-~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDA-ARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHH-HHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998442         22322 2456677899999999997655556666666654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.05  E-value=4.1e-10  Score=98.56  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=75.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC--------------ceecCCHHhhcCCCCEEEEeC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------------AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~aDvVv~~~  100 (221)
                      ..++|+|||.|.||..+|..|...|++|.+|++++...+...+.+              +....+++++++++|+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            357899999999999999999999999999999754333333322              334568889999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCCCccC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                      |. ...+.++ ++....+++++++|+++.|-..+
T Consensus       108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            93 3333333 45666788999999999876554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.00  E-value=1.8e-09  Score=93.39  Aligned_cols=105  Identities=16%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-Cc--------------eecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GA--------------KFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ++|+|||+|.||..+|..|...|++|.++++++...+...+. +.              ....+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            699999999999999999999999999999875433333332 21              234678888899999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      ... ...++ ++....+++++++|+. .|.......+.+.+..
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            443 33333 4566678999999998 4422344445555554

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.99  E-value=9e-10  Score=94.54  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcC--CCCChhHHHhcCc-----------eecC--CHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGA-----------KFEE--DLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~l~ell~~aDvVv~~~p  101 (221)
                      ++|+|||+|.||..+|..|...|++|.+|++  ++...+...+.+.           ....  ++++.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            5899999999999999999988999999998  6543343333332           3344  67788899999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCC---c-cCHHHHHHHHHh
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA---I-MDTQAVVDACSS  144 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~---~-vd~~al~~al~~  144 (221)
                      .. .+..++ .+... +++++++|+++.|-   . -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            43 444433 34556 88899999998774   1 123445555654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.98  E-value=1.2e-09  Score=99.16  Aligned_cols=108  Identities=12%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------------CceecCCHHhhcCCCCE
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------------GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDv   95 (221)
                      .++|+|||+|.||..+|..|...|++|++||+++...+...+.                    .+...+++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            6899999999999999999999999999999875433322221                    13445677788899999


Q ss_pred             EEEeCCCC---------hhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           96 VVVNTPLT---------EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        96 Vv~~~p~~---------~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      |++|+|..         ......+ ++....++++++||+.|.-.+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999842         2222222 445667899999999984334344445555443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.96  E-value=1.7e-09  Score=89.89  Aligned_cols=99  Identities=18%  Similarity=0.353  Sum_probs=72.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .++|+|||+|.||+.+++.|...|    .+|.+||+++..      .|+....+++++++++|+|++|+| ......++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~   76 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN   76 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH
Confidence            468999999999999999998888    689999997643      467767788899999999999999 344444442


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                       +....+ ++.++|....|  ++.+.+.+.+..+
T Consensus        77 -~l~~~l-~~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           77 -NIKPYL-SSKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             -HSGGGC-TTCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             -HHHHhc-CCCEEEEECCC--CCHHHHHHHhCCC
Confidence             334455 45666666554  3445666666553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.96  E-value=1.6e-09  Score=91.80  Aligned_cols=108  Identities=13%  Similarity=0.152  Sum_probs=75.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------------CCHHhhcC---CCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLP---KCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------------~~l~ell~---~aDvVv~~~p  101 (221)
                      ++|+|||+|.||..+|..|...|++|.+||+++...+...+.|....            .+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            58999999999999999999999999999997544444444343221            13344444   8999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCc
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                      . ..+..++ ++....+++++++|+++.|- -..+.+.+.+...++
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~v  126 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENI  126 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccE
Confidence            3 3444433 34556788999999998653 234556666654433

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.96  E-value=1.6e-09  Score=87.29  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=81.0

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g-------~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      ++|+||| .|.||+.+++.|...|++|.+++|++...+...+ .+       +. ..+++++++++|+|++++| .....
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHH
Confidence            5899999 9999999999999999999999986533322221 12       33 3577888899999999999 33333


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccC------------HHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMD------------TQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd------------~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .++. +....++ ++++|+++.|--.+            .+.+.+.+..  .  ..++++.+.|.
T Consensus        79 ~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~--~~v~~~~~~~~  137 (212)
T 1jay_A           79 DTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--E--KVVSALHTIPA  137 (212)
T ss_dssp             HHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--S--CEEECCTTCCH
T ss_pred             HHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--C--eEEEEccchHH
Confidence            3332 2333454 89999999875432            5667776652  2  36787776653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.95  E-value=1.5e-09  Score=94.11  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=71.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCC-------CeEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTM   89 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~el   89 (221)
                      .++|+|||+|.||..+|..|...|       ++|.+|++++.     ..+...+.              ++....+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998888       89999999764     33322221              23444678888


Q ss_pred             cCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      ++++|+|++++|. .....++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999993 3334433 345567888999999988754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.95  E-value=2.3e-09  Score=97.40  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=82.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLP   91 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~   91 (221)
                      -++|||||+|.||..+|..+...|++|++||+++...+.+.+           .|             +....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            368999999999999999999999999999997643332211           12             23445665 688


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE-EcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI-n~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      +||+|+.++|.+.+.+..+-.+..+.++++++|+ |+|.-   ....+.+.+.. .-...++..|.+
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~P  146 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNP  146 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecCh
Confidence            9999999999776665555556777889999995 56543   34555555542 234467775553

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.95  E-value=1.4e-09  Score=95.48  Aligned_cols=93  Identities=10%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-------CeEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTML   90 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~ell   90 (221)
                      ++|+|||+|.||..+|..|...|       .+|.+|++++.     ..+...+.              ++....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998888       89999999765     33332221              244456788889


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHh----cCCCCCEEEEcCCCC
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIA----KMKKGVLIVNNARGA  131 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~----~mk~ga~lIn~srg~  131 (221)
                      +++|+|++++| +.....++ .+...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            99999999999 34444443 23444    678899999998873

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.94  E-value=2.6e-09  Score=92.22  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=68.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC-----------ceecCCHHhhcCCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-----------AKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-----------~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ...+|+|||+|.||..+|..|...|++|.+|+|++...+...+.+           +....++++ ++.+|+|++++| +
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~   90 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-V   90 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-G
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-H
Confidence            367999999999999999999999999999999754444444433           455667888 899999999999 3


Q ss_pred             hhhhhcchHHHHhcCC-CCCEEEEcCCC
Q 027577          104 EKTRGMFDKDRIAKMK-KGVLIVNNARG  130 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk-~ga~lIn~srg  130 (221)
                      ..+..++     ..++ +++++|+++.|
T Consensus        91 ~~~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           91 QYIREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             GGHHHHH-----TTCSSCCSEEEECCCC
T ss_pred             HHHHHHH-----HHhCcCCCEEEEEeCC
Confidence            4444333     3344 78999999977

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.94  E-value=2.3e-09  Score=95.15  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc------------------eecCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA------------------KFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~------------------~~~~~l~ell~~aDvVv~   98 (221)
                      ++|+|||+|.||..+|..|.. |++|+++|+++...+...+.+.                  ....++++.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            589999999999999999998 9999999997543333332222                  334567788889999999


Q ss_pred             eCCCCh----------hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577           99 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus        99 ~~p~~~----------~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      |+|...          .....+ +.... ++++++||+.+.-.+-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999542          133333 34555 8899999998877776677777776554

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.93  E-value=5.5e-10  Score=97.50  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=70.8

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCCCCEEEEeCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      +|+|||+|.||..+|..|...|++|.+||+++...+...+.              ++....+++++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            89999999999999999999999999999875433333322              234446788889999999999993 


Q ss_pred             hhhhhcchHH---HHhcCCC-CCEEEEcCCCCcc
Q 027577          104 EKTRGMFDKD---RIAKMKK-GVLIVNNARGAIM  133 (221)
Q Consensus       104 ~~t~~~i~~~---~~~~mk~-ga~lIn~srg~~v  133 (221)
                      .....++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4444444321   4455678 8999999877433

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.93  E-value=9.6e-10  Score=89.68  Aligned_cols=92  Identities=16%  Similarity=0.261  Sum_probs=66.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEE-EcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      -++|+|||+|+||+.+|+.|...|++|.+ +||++...+. ....++....+..+.++++|+|++++|. .....++. +
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~-~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVT-Q  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHT-T
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHH-H
Confidence            36899999999999999999999999998 9987654443 3345654444556668999999999992 22222221 1


Q ss_pred             HHhcCCCCCEEEEcCCCC
Q 027577          114 RIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~  131 (221)
                       +.. .++.++|+++.|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             112 3588999998764

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.89  E-value=1.1e-08  Score=84.20  Aligned_cols=99  Identities=21%  Similarity=0.307  Sum_probs=74.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|||||+|.||+.+++.+...|+++ .++|++.. .+   .    .+.++++++ .++|+|++|+|..  .   ..+..
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~---~----~~~~~~~l~~~~~DvVv~~~~~~--~---~~~~~   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE---K----MVRGIDEFLQREMDVAVEAASQQ--A---VKDYA   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT---T----EESSHHHHTTSCCSEEEECSCHH--H---HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh---h----hcCCHHHHhcCCCCEEEECCCHH--H---HHHHH
Confidence            48999999999999999998889997 68898642 21   1    456899999 6999999999932  1   12223


Q ss_pred             HhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577          115 IAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~  148 (221)
                      ...++.|..+|+.+.+..-+.   +.|.++.++.+..
T Consensus        68 ~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           68 EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            455778999999988877666   5677777664444

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.87  E-value=1.3e-08  Score=77.39  Aligned_cols=106  Identities=12%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             CCCCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        34 l~g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      ++-++|+|||+    |.||+.+++.|...|++|+.+|++..  +   -.|...+.+++++.+.+|++++++| .+....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~--~---i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v   85 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD--E---IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV   85 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--E---ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCC--e---ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence            56789999999    99999999999999999888887542  1   1477777899999999999999999 4555555


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +. +..+ ...++++++.+.    ..+++.+..++..+.  .+|
T Consensus        86 ~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~--~ig  121 (138)
T 1y81_A           86 AK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE--YSF  121 (138)
T ss_dssp             HH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE--EEC
T ss_pred             HH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE--EEc
Confidence            54 3444 566777777643    257788888887777  555

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.86  E-value=5.6e-09  Score=94.64  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CC-eEEEEcCCCC----ChhHHHh---------------------cC-ceecCCHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NC-NLLYHDRVKM----DPQLEKE---------------------TG-AKFEEDLD   87 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~---------------------~g-~~~~~~l~   87 (221)
                      -++|+|||+|.||..+|..|... |+ +|++||+++.    ..+...+                     .+ +...++ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            36899999999999999999999 99 9999999875    3222211                     12 333445 6


Q ss_pred             hhcCCCCEEEEeCCCCh--------hhhhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHH
Q 027577           88 TMLPKCDIVVVNTPLTE--------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~--------~t~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~a  141 (221)
                      +.+++||+|++|+|...        +...+.  .+.....+++|+++|+.|.-.+-..+.+.+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            78899999999999542        222232  3456778999999999998777666777653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.85  E-value=4.2e-09  Score=88.33  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc---Cc----e-ecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GA----K-FEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g~----~-~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++|+|||+|.||..+|..|...|++|.+|++++...+.....   +.    . ..++ .+.++++|+|++++|.. .+..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence            589999999999999999999999999999976543322211   11    1 1233 46678899999999943 3444


Q ss_pred             cchHHHHhcCCCCCEEEEcCCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ++ ++....+++++++|+++.|
T Consensus        79 v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           79 AV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             HH-HHHHTTSCTTSCEEEECSS
T ss_pred             HH-HHHHhhCCCCCEEEEecCC
Confidence            44 3456678889999998765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.84  E-value=4.1e-09  Score=95.68  Aligned_cols=107  Identities=10%  Similarity=0.110  Sum_probs=78.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHh-------------------cCceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-------------------TGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv   95 (221)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...+                   .++...+++++.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            6999999999999999999876  7999999986533322221                   123445577788889999


Q ss_pred             EEEeCCCChh--------------hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHh
Q 027577           96 VVVNTPLTEK--------------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (221)
Q Consensus        96 Vv~~~p~~~~--------------t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~  144 (221)
                      |++|+|....              ... ..+.....++++++||+.|.-.+-..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~-~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVES-VSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHH-HHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHH-HHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999884321              111 12445677999999999987666566777777776

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.82  E-value=2.2e-08  Score=90.50  Aligned_cols=116  Identities=13%  Similarity=0.178  Sum_probs=78.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-----------ceecCCHHhhcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-----------AKFEEDLDTMLPKC   93 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~l~ell~~a   93 (221)
                      =++|+|||+|.||..+|..+...|++|++||+++...+....           .|           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999987533222111           01           1223466 568899


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      |+|+.++|...+....+-.+....++++++|++.+.+  +....+.+.+.. .-..+++..|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecC
Confidence            9999999965544444445566678999999974433  344466665543 2233566666

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.82  E-value=1.3e-08  Score=85.84  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      ++++.|+|.|.+|++++..|...|.+|.+++|+..+.+...+.++... +++++ .++|+||.++|........+..+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            899999999999999999999999999999998766544435565543 44443 3899999999954322122333322


Q ss_pred             -hcCCCCCEEEEcCCCC
Q 027577          116 -AKMKKGVLIVNNARGA  131 (221)
Q Consensus       116 -~~mk~ga~lIn~srg~  131 (221)
                       +.++++.+++|+....
T Consensus       196 ~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHHCSEEEESCCSS
T ss_pred             HhhCCCCCEEEEeCCCC
Confidence             2455666777766654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.78  E-value=1.9e-08  Score=89.43  Aligned_cols=96  Identities=25%  Similarity=0.357  Sum_probs=75.8

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC------CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK------MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~------~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ..-|+||||+|||+|+-|++-|..|+..|.+|++--|..      .+.+.+.+.|+... +.+|+++.||+|++.+|+..
T Consensus        32 ~~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~  110 (491)
T 3ulk_A           32 ASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQ  110 (491)
T ss_dssp             TGGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGG
T ss_pred             hHHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhh
Confidence            345899999999999999999999999999988765521      12345666788765 89999999999999999533


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      + ..++ ++....||+|+.+. .|.|
T Consensus       111 q-~~vy-~~I~p~lk~G~~L~-faHG  133 (491)
T 3ulk_A          111 H-SDVV-RTVQPLMKDGAALG-YSHG  133 (491)
T ss_dssp             H-HHHH-HHHGGGSCTTCEEE-ESSC
T ss_pred             H-HHHH-HHHHhhCCCCCEEE-ecCc
Confidence            3 3344 56899999999887 5555

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.78  E-value=7.6e-09  Score=90.54  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=73.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCCCh-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTE-  104 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~~~-  104 (221)
                      .+.+++|.|+|.|.+|+.+++.++.+|++|+++|+++...+.+.+.+...       ..++.+.+..+|+|+.+++... 
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            47789999999999999999999999999999999764444443332111       1245566778999999987432 


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....++.++.++.|+++.+++|++-
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEec
Confidence            1234457778899999999999974

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.75  E-value=2.4e-08  Score=89.45  Aligned_cols=110  Identities=16%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhh---------------cCCCCEEE
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTM---------------LPKCDIVV   97 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~el---------------l~~aDvVv   97 (221)
                      -.|.++.|||+|.||..+|..|...|++|++||+++...+...+..... ...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            4689999999999999999999999999999999765444333211100 0111111               46899999


Q ss_pred             EeCCCChhh--------hhcc--hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577           98 VNTPLTEKT--------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus        98 ~~~p~~~~t--------~~~i--~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      +|+|.....        ..+.  .+...+.|++|+++|+.|.-.+-..+.+.+.+.
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence            999943321        1222  245677899999999999887777777777643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.75  E-value=3.4e-08  Score=84.22  Aligned_cols=112  Identities=16%  Similarity=0.266  Sum_probs=77.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcCc---eec--CCHHhhcCCCCEEEEeCCCCh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGA---KFE--EDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~---~~~--~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .++.+++++|+|.|.+|++++..|...|+ +|.+++|+....+ .++..+.   ...  +++.+.+.++|+|+.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            35789999999999999999999999998 8999999753332 3333332   221  345677889999999999653


Q ss_pred             hhh--h-cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          105 KTR--G-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       105 ~t~--~-~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ...  . .++   ...++++.+++|++-. +..+ .|.+..++..+.
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~  258 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYN-PLET-KWLKEAKARGAR  258 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCE
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCE
Confidence            211  1 122   2457889999999885 3333 366666655544

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.73  E-value=1.6e-08  Score=77.45  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=78.0

Q ss_pred             CCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -++|+|||+    |++|..+++.|...|++|+.+|++....+   -.|+..+.+++++.+.+|++++++| .+....++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~   88 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ   88 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH
Confidence            578999999    89999999999999999888887541011   1477777789999899999999999 455555554


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      + ..+ ...+.++++.+  ..  ++++.+.+++..+.
T Consensus        89 ~-~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           89 E-AIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS  119 (145)
T ss_dssp             H-HHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred             H-HHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence            3 333 55667777753  22  67888888888777

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.72  E-value=1.2e-08  Score=96.81  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=81.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (221)
                      =++|||||+|.||..+|..+...|++|++||+++...+..           .+.|             +....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3579999999999999999999999999999975332221           1112             2334566 6788


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      +||+||.++|.+.+.+..+-.+....++++++|++.+.+  +....+.+.+.. .-...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC
Confidence            999999999977666555555667788999999855443  334455555532 22335667554

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.72  E-value=1.1e-07  Score=81.47  Aligned_cols=107  Identities=16%  Similarity=0.086  Sum_probs=76.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc---------------eecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~---------------~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.  .+...+.|+               ....+++++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            689999999999999999999999999999965  243333332               123466777668999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ... +..++ ++....++++++||.+..| +-.++.+.+.+...++.
T Consensus        81 ~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           81 VVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             CCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            433 33332 4455667889999998876 33346677777655544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.71  E-value=1.3e-08  Score=80.21  Aligned_cols=95  Identities=16%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceec----CC---HHhh--cCCCCEEEEeCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM--LPKCDIVVVNTP  101 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el--l~~aDvVv~~~p  101 (221)
                      .++.+++|+|+|+|.+|+.+|+.|... |++|+++|+++...+.+.+.|+..+    .+   ++++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357789999999999999999999998 9999999997654444555565422    22   3444  678999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ..+.+..++  ..+..+.+...+|..+
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            544443332  2455566666666543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.71  E-value=2.9e-09  Score=89.68  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeE-EEEcCCCCChhHH-HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|||||+|+||+.+++.|... ++| .+||+++...+.+ ...+. ...+++++++++|+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999877 888 5899875433333 24465 55678888899999999999432 2     233


Q ss_pred             HhcC-CCCCEEEEcCCCC
Q 027577          115 IAKM-KKGVLIVNNARGA  131 (221)
Q Consensus       115 ~~~m-k~ga~lIn~srg~  131 (221)
                      +..+ +++.+|||++-+-
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            3334 6789999998553

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.69  E-value=1.2e-08  Score=86.24  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=74.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceecCCHHhhcCCCCEEEEeCCCC--hhhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLT--EKTR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVv~~~p~~--~~t~  107 (221)
                      .++.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+.+.. ......++++++++++|+||.++|..  +...
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~  192 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD  192 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence            46789999999999999999999999999 89999997643322211 11112345667788999999999953  2221


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ..+.   .+.++++++++|+.-... .+ .|.+..++..+.
T Consensus       193 ~~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~~  228 (277)
T 3don_A          193 SVIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGNP  228 (277)
T ss_dssp             CSSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTCC
T ss_pred             CCCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcCE
Confidence            1222   355788999999887643 33 455555544443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.69  E-value=7.9e-09  Score=87.87  Aligned_cols=103  Identities=12%  Similarity=0.093  Sum_probs=72.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-----C-CeEEEEcCCCCChhHHHh-cCceecC-------------CHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-----N-CNLLYHDRVKMDPQLEKE-TGAKFEE-------------DLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~l~ell~~aDvV   96 (221)
                      ++|+|||+|.||..+|..|...     | ++|.+|+| +...+...+ .|+....             +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999888     8 99999998 433344444 4554321             233457889999


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCH-HHHHHHHHh
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT-QAVVDACSS  144 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~-~al~~al~~  144 (221)
                      ++++|... +..++ ++....++++++||++..|  +.. +.+.+.+..
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~  132 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPD  132 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCC
Confidence            99999543 33333 3445567788999999776  343 555555544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.69  E-value=4.1e-08  Score=84.76  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .++|+|||+|.||..+|..|...|.+|.+++|. ...+...+.|..             ...++++ ++.+|+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            478999999999999999999999999999984 233334444432             2346666 5889999999993


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       ..+..++ ++....++++++||.+..|
T Consensus        81 -~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 -PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             -HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             -hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence             3444333 2344556789999999988

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.69  E-value=2.2e-08  Score=83.60  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcCceecCCHHhhcCCCCEEEEeCCCChhh-hhc
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT-RGM  109 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t-~~~  109 (221)
                      .+.| +++|||.|.+|++++..|...|+ +|.++||+..+.+.. +..+....+++++.++++|+|+.++|..-.. ...
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            4678 99999999999999999999998 899999975322211 1222233457778889999999999853211 123


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      +..+.   ++++.+++++.-+   .+.-+.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44333   5789999999988   455555566555

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.68  E-value=3.2e-08  Score=94.02  Aligned_cols=116  Identities=14%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (221)
                      ++|+|||+|.||..+|..+...|++|++||+++...+....           .|             +....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            58999999999999999999999999999997533222110           11             2334566 56899


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~  156 (221)
                      ||+|+.++|.+.+.+..+-.+..+.++++++|++.+.+  +....+.+.+... -...++..|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCC-CCEEEecCCC
Confidence            99999999977665555555666778999999655443  3334555544321 1335666554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.66  E-value=8e-08  Score=82.48  Aligned_cols=106  Identities=16%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc-------------eecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------------KFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------------~~~~~l~ell~~aDvVv~~   99 (221)
                      ....++|+|||.|.||..+|..|...|.+|.+| +++...+...+.|.             ....++++ ++.+|+|+++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vila   93 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFC   93 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEEC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEE
Confidence            355789999999999999999999999999999 65433343333332             22345554 5889999999


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      +|.. .+..++ ++....++++++||++..|= -.++.+.+.+.
T Consensus        94 vk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           94 VKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             cccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            9943 444433 34556678899999997772 22345555553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.65  E-value=6e-08  Score=84.63  Aligned_cols=93  Identities=9%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHc-cCC-CeEEEEcCCCCChhHHH-hc----C--ceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLK-PFN-CNLLYHDRVKMDPQLEK-ET----G--AKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~-~~G-~~V~~~d~~~~~~~~~~-~~----g--~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ...++|+|||+|.+|+.+++.+. ..+ .+|.+|||++...+.+. ..    +  +..+.+++++++++|+|++|+|...
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~  206 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  206 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence            35789999999999999998874 334 57999999764433332 22    5  3456789999999999999999652


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       ...++..   +.+++|+.+++++..
T Consensus       207 -~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 -YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             -EEEEECG---GGCCTTCEEEECSCC
T ss_pred             -CCceecH---HHcCCCCEEEECCCC
Confidence             2344543   467899999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.65  E-value=1.9e-07  Score=79.78  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.  .+...+.|+.              ...+.++ ++.+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            689999999999999999999999999999965  3444444432              1234544 6789999999993


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a  150 (221)
                      . .+..+ -++....++++++||.+..| +-.++.+.+.+...++.+.
T Consensus        80 ~-~~~~~-l~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           80 F-ANSRY-EELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             G-GGGGH-HHHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             C-CcHHH-HHHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            2 33333 34455668889999999877 2235667777765555433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.61  E-value=2.1e-07  Score=71.40  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec----CC---HHhh-cCCCCEEEEeCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----ED---LDTM-LPKCDIVVVNTPL  102 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~---l~el-l~~aDvVv~~~p~  102 (221)
                      ....+++|.|+|+|.+|+.+++.|+..|++|+++|+++...+.+. ..|...+    .+   +.+. +..+|+|++++|.
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            356789999999999999999999999999999998765444443 4454322    12   2222 5679999999984


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ...+.  .-......+.+...+|-..++.
T Consensus        95 ~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           95 DSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             cHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            33322  1222344445556666655544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.60  E-value=3e-08  Score=81.76  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      .-++|||||+|.||.++|+.|+..|++|.+|++.                  ++ +++||  ++++|.. ....++ .+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l   61 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKL   61 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHH
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHH
Confidence            3479999999999999999999999999999972                  12 46789  8889954 444444 456


Q ss_pred             HhcCCCCCEEEEcC
Q 027577          115 IAKMKKGVLIVNNA  128 (221)
Q Consensus       115 ~~~mk~ga~lIn~s  128 (221)
                      ...+++++++++++
T Consensus        62 ~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           62 SAFARRGQMFLHTS   75 (232)
T ss_dssp             HTTCCTTCEEEECC
T ss_pred             HHhcCCCCEEEEEC
Confidence            66789999999985

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.60  E-value=3.2e-07  Score=78.87  Aligned_cols=89  Identities=21%  Similarity=0.371  Sum_probs=68.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHHh----cCc--eecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~----~g~--~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ..++++|||.|.||+.+++.+.. ++ .+|.+|||+ ...+.+++    .|+  ..+ +++++++++|+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            47899999999999999999875 44 479999998 55444432    354  455 8999999999999999954   


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ..++..   +.+++|++|++++...
T Consensus       195 ~pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          195 TPLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             SCSSCG---GGCCTTCEEEECCCSS
T ss_pred             CcccCH---HHcCCCcEEEECCCCC
Confidence            345543   4589999999998653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.59  E-value=7.4e-08  Score=69.55  Aligned_cols=89  Identities=20%  Similarity=0.217  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceec-------CCHHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .+++|+|+|.|.||+.+++.|...| ++|+++++++...+.....++...       .+++++++.+|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4679999999999999999999999 899999997544333333343321       235567889999999998322 1


Q ss_pred             hhcchHHHHhcCCCCCEEEEcC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ..++ .   ...+.|...++.+
T Consensus        83 ~~~~-~---~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIA-K---AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHH-H---HHHHTTCEEECCC
T ss_pred             HHHH-H---HHHHhCCCEEEec
Confidence            1111 1   2234577777765

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.57  E-value=2e-07  Score=78.66  Aligned_cols=81  Identities=20%  Similarity=0.286  Sum_probs=67.2

Q ss_pred             ccCCCCCEEEEEccCHH-HHHHHHHHccC--CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      +.++.|+++.|||.|.| |+.+|+.|...  |.+|++++++.              .++.+.+++||+|+.+++.    .
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p  214 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGV----A  214 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCC----C
Confidence            45799999999999985 99999999998  89999997642              4788999999999999982    2


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +++..+.   +|+|+++||++.-.+
T Consensus       215 ~~I~~~~---vk~GavVIDVgi~r~  236 (281)
T 2c2x_A          215 HLLTADM---VRPGAAVIDVGVSRT  236 (281)
T ss_dssp             TCBCGGG---SCTTCEEEECCEEEE
T ss_pred             cccCHHH---cCCCcEEEEccCCCC
Confidence            3566555   589999999987554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.56  E-value=1.9e-07  Score=78.93  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=66.5

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.|+++.|||.|. +|+.+|..|...|++|.+++++.              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF  217 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCC
Confidence            3579999999999988 69999999999999999987631              3788999999999999982    335


Q ss_pred             chHHHHhcCCCCCEEEEcCCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +..+.   +|+|+++||++.-.
T Consensus       218 I~~~~---vk~GavVIDvgi~~  236 (285)
T 3l07_A          218 ITADM---VKEGAVVIDVGINH  236 (285)
T ss_dssp             BCGGG---SCTTCEEEECCCEE
T ss_pred             CCHHH---cCCCcEEEEecccC
Confidence            65544   59999999998654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.55  E-value=2e-07  Score=78.81  Aligned_cols=81  Identities=21%  Similarity=0.361  Sum_probs=67.4

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.|+++.|||.|. +|+.+|..|...|++|.+++++.              .++++.+++||+|+.+++.    .++
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~  216 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL  216 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCc
Confidence            4579999999999988 69999999999999999998632              3788999999999999982    335


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+.   +|+|+++||++.-.+
T Consensus       217 I~~~~---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          217 LRSDM---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             BCGGG---SCTTEEEEECCCEEC
T ss_pred             CCHHH---cCCCeEEEEeccCcc
Confidence            66544   599999999987553

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.54  E-value=1.4e-07  Score=80.23  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=65.7

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH--hhcCCCCEEEEeCCCChhhh
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD--TMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~--ell~~aDvVv~~~p~~~~t~  107 (221)
                      +.++.|+++.|||.|. +|+.+|..|...|++|.+++++..              +++  +.+++||+|+.+++.    .
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~----p  221 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQ----P  221 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCC----C
Confidence            3579999999999987 799999999999999999987321              345  889999999999983    2


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +++..+.   +|+|+++||++.-.
T Consensus       222 ~~I~~~~---vk~GavVIDvgi~~  242 (300)
T 4a26_A          222 GYVKGEW---IKEGAAVVDVGTTP  242 (300)
T ss_dssp             TCBCGGG---SCTTCEEEECCCEE
T ss_pred             CCCcHHh---cCCCcEEEEEeccC
Confidence            3565544   69999999998654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.54  E-value=4.6e-07  Score=67.27  Aligned_cols=90  Identities=18%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec----CCHHh----hcCCCCEEEEeCCCChhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~l~e----ll~~aDvVv~~~p~~~~t  106 (221)
                      +++|+|+|+|.+|+.+++.|...|++|.++|+++...+... ..++...    .+.+.    .++++|+|++++|....+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57999999999999999999999999999998653333333 2354321    12222    257899999999854322


Q ss_pred             hhcchHHHHhcCCCCCEEEEc
Q 027577          107 RGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  222344556777666543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.53  E-value=1.5e-07  Score=79.66  Aligned_cols=81  Identities=17%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|.+++++.              .++.+.+++||+|+.+++.    .++
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~l  215 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGF  215 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCC----cCc
Confidence            4579999999999997 59999999999999999998532              4788899999999999982    235


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+.   +|+|+++||++.-.+
T Consensus       216 I~~~~---vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          216 IPGDW---IKEGAIVIDVGINRL  235 (288)
T ss_dssp             BCTTT---SCTTCEEEECCCEEC
T ss_pred             CCHHH---cCCCcEEEEccCCcc
Confidence            66544   589999999997553

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.52  E-value=3.4e-07  Score=77.89  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|.+++++              ..++++.+++||+||.+++.    .++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~----p~~  221 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQ----PEM  221 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCC----ccc
Confidence            4579999999999996 6999999999999999999753              24788999999999999983    235


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCcc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                      +..+.   +|+|+++||++.-.+-
T Consensus       222 I~~~~---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          222 VKGEW---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             BCGGG---SCTTCEEEECCCBC--
T ss_pred             CCHHH---cCCCcEEEEccCCCcc
Confidence            66555   5899999999986543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.52  E-value=1.7e-07  Score=78.91  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      +.|+++.|||.|. +|+.+|+.|...|++|++++++              ..++++.+++||+|+.+++.    .+++..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~----p~~I~~  209 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGR----PGFLNR  209 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSC----TTCBCG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCC----CccccH
Confidence            8999999999986 8999999999999999999863              14788999999999999983    235665


Q ss_pred             HHHhcCCCCCEEEEcCCCC
Q 027577          113 DRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~  131 (221)
                      +.   +|+|+++||++.-.
T Consensus       210 ~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          210 EM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             GG---CCTTCEEEECCCEE
T ss_pred             hh---ccCCcEEEEeccCc
Confidence            44   59999999998654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.52  E-value=1.8e-07  Score=70.62  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hhh-cCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l---~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      .++|.|+|+|.+|+.+|+.|...|++|+++|+++...+.+.+.|+..+    .+.   +++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            357999999999999999999999999999997655555555666432    122   221 468999999999655554


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+.  ..+..+.++..+|-..
T Consensus        87 ~~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEEE
Confidence            332  2445556666666543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.50  E-value=3.5e-07  Score=77.32  Aligned_cols=81  Identities=22%  Similarity=0.388  Sum_probs=67.0

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||.|. +|+.+|..|...|++|.+++++.              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGL  217 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCC
Confidence            4579999999999987 79999999999999999987632              3688889999999999982    345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCc
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +..+.   +|+|+++||++.-.+
T Consensus       218 I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          218 VKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             BCGGG---SCTTCEEEECCSCSS
T ss_pred             CCHHH---cCCCeEEEEeccccc
Confidence            66544   599999999987553

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.49  E-value=2.5e-07  Score=81.65  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCCeEEEEc---CCCCChhH-HHhcC------------c-------eecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD---RVKMDPQL-EKETG------------A-------KFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d---~~~~~~~~-~~~~g------------~-------~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   +++...+. ....+            .       ....+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 599999999   53222222 12211            1       134578888899


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEc
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      +|+|++++|.. ....++ ++....++++++|++.
T Consensus        83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999933 333333 3455567889999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.49  E-value=6.9e-08  Score=83.10  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             ccCCCCCEEEEEccCHH-HHHHHHHHccCCCeEEEEcCCCCC-hhHHHhcC---cee-----c--CCHHhhcCCCCEEEE
Q 027577           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETG---AKF-----E--EDLDTMLPKCDIVVV   98 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g---~~~-----~--~~l~ell~~aDvVv~   98 (221)
                      +.++.|+++.|||.|.| |+.+|+.|...|.+|.++||+... .+.....+   ...     .  .++++.+++||+||.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            44799999999999975 999999999999999999886210 00001111   111     1  478899999999999


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +++. +  ..++..+.   +|+|+++||++.-
T Consensus       252 Atg~-p--~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          252 GVPS-E--NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             CCCC-T--TCCBCTTT---SCTTEEEEECSSS
T ss_pred             CCCC-C--cceeCHHH---cCCCeEEEEcCCC
Confidence            9983 1  22366544   5899999999764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.48  E-value=5.1e-07  Score=77.75  Aligned_cols=88  Identities=18%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CC-CeEEEEcCCCCChhHHH-hc-----CceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEK-ET-----GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~-~~-----g~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ..++++|||+|.+|+.+++.+.. .+ .+|.+|||++...+.+. ..     .+. +.++++++ ++|+|++|+|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            57899999999999999998875 33 57999999764433322 21     244 67899999 9999999999542  


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       .++..   +.+++|+.+++++..
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSCC
T ss_pred             -ceecH---HHcCCCeEEEECCCC
Confidence             44432   468899999999643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.46  E-value=5.1e-07  Score=76.77  Aligned_cols=108  Identities=11%  Similarity=0.212  Sum_probs=72.4

Q ss_pred             CCEEEEEccCHHHHH-HHHHHcc-CCCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -.+|||||+|.||+. +++.++. -++++. ++|+++...+ .++..|+..+.+++++++++|+|++|+|.....  -+ 
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~--~~-   82 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHY--EI-   82 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHH--HH-
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHH--HH-
Confidence            468999999999996 8888876 467866 6888654333 344567766789999999999999999933221  12 


Q ss_pred             HHHHhcCCCCCEEEE--cCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVN--NARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn--~srg~~vd~~al~~al~~g~i~  148 (221)
                        ....++.|..++.  ...-.+-+.++|.++.++.++.
T Consensus        83 --~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           83 --IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             --HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence              2233455555543  2223344456677777765554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.45  E-value=3.8e-07  Score=78.52  Aligned_cols=136  Identities=10%  Similarity=-0.007  Sum_probs=93.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-----------Hhc--------------CceecCCHHhhc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET--------------GAKFEEDLDTML   90 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~--------------g~~~~~~l~ell   90 (221)
                      -.+|+|||.|.||+.+|..+...|++|.+||+++...+..           .+.              .+....++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            5689999999999999999999999999999875321110           000              123456888999


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCC
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP  170 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~  170 (221)
                      ++||+|+=++|-+.+.+.-+-++.=+.++++++|-..+++  +....|.+.+.. .=+..++-.|.  |.+ --||.+  
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffN--P~~-~m~LVE--  157 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVN--PPY-YIPLVE--  157 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECS--STT-TCCEEE--
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCC--Ccc-ccchHH--
Confidence            9999999999977777776666777778999998665555  455677666543 23334555443  321 123433  


Q ss_pred             CeEECCCCCc
Q 027577          171 NQAMTPHVSG  180 (221)
Q Consensus       171 n~~~tPH~a~  180 (221)
                       |+-+|+++-
T Consensus       158 -iv~g~~Ts~  166 (319)
T 3ado_A          158 -LVPHPETSP  166 (319)
T ss_dssp             -EEECTTCCH
T ss_pred             -hcCCCCCcH
Confidence             566666553

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.42  E-value=4.9e-07  Score=78.77  Aligned_cols=67  Identities=22%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -.+|||||+|.||+..++.++.. ++++. ++|+++...+.++..|+..+.+++++++  +.|+|++|+|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~   75 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN   75 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            35899999999999999999876 67765 5788654444555678887889999997  79999999994

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.42  E-value=5.7e-07  Score=67.50  Aligned_cols=90  Identities=17%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHH---hh-cCCCCEEEEeCCCChh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---TM-LPKCDIVVVNTPLTEK  105 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~---el-l~~aDvVv~~~p~~~~  105 (221)
                      ...++|.|+|+|.+|+.+|+.|...|++|+++|+++...+.+...++...    .+.+   ++ +.++|+|++++|..+.
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence            34678999999999999999999999999999987644444444454321    2222   22 4689999999983332


Q ss_pred             hhhcchHHHHhcCCCCCEEE
Q 027577          106 TRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lI  125 (221)
                      +  +......+.+....+++
T Consensus        84 n--~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           84 N--LKILKALRSVSDVYAIV  101 (141)
T ss_dssp             H--HHHHHHHHHHCCCCEEE
T ss_pred             H--HHHHHHHHHhCCceEEE
Confidence            2  22233344444333444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.41  E-value=2.7e-07  Score=68.78  Aligned_cols=96  Identities=13%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHH---hh-cCCCCEEEEeCCCCh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---TM-LPKCDIVVVNTPLTE  104 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~---el-l~~aDvVv~~~p~~~  104 (221)
                      .+.+++|.|+|+|.+|+.+++.|...|++|+++|+++...+.+...+....    .+.+   ++ +.++|+|+.+++...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   82 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence            356788999999999999999999999999999986432222223333211    2222   22 567999999998542


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +.. ..-......+.+. .+|..+.+
T Consensus        83 ~~~-~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           83 QAS-TLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             HHH-HHHHHHHHHTTCS-EEEEECCS
T ss_pred             HHH-HHHHHHHHHcCCC-eEEEEeCC
Confidence            222 1222334445665 55544443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.41  E-value=4.3e-07  Score=77.52  Aligned_cols=107  Identities=16%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCC----------HHhhcCCCCEEEEeCCCChh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED----------LDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~----------l~ell~~aDvVv~~~p~~~~  105 (221)
                      .++|+|||.|.||..+|..|. .|.+|.+++|+....+...+.|+....+          -++....+|+|++++|. ..
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~   79 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQ   79 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GG
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HH
Confidence            379999999999999999999 8999999998653334444445432210          02456789999999983 22


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +..++  +.++.+.+++ ||.+..|=- .++.+.+.+...++.
T Consensus        80 ~~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           80 LQSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            33333  2233345566 888877632 233444444444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.40  E-value=5.2e-07  Score=75.80  Aligned_cols=71  Identities=18%  Similarity=0.188  Sum_probs=52.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcC----ceecCCHHhhcC-CCCEEEEeCCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG----AKFEEDLDTMLP-KCDIVVVNTPLT  103 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g----~~~~~~l~ell~-~aDvVv~~~p~~  103 (221)
                      .++.+++++|+|.|.+|++++..|...|.+|.+++|+....+ .++..+    +.. .+++++.+ ++|+||.++|..
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC-
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCC
Confidence            467899999999999999999999999999999999753322 222221    222 24445444 899999999954

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.39  E-value=8.7e-07  Score=76.07  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=69.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .+|||||+|.||+.+++.+... ++++. ++|+++...+ .++..++. +.+++++++  ++|+|++|+|.....  -+ 
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~--~~-   79 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHA--DL-   79 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHH--HH-
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHH--HH-
Confidence            5899999999999999999875 77866 6888654332 34556787 789999997  799999999943222  12 


Q ss_pred             HHHHhcCCCCCEEEEc--CCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNN--ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~--srg~~vd~~al~~al~~g~i~  148 (221)
                        ....++.|..++.-  ..-.+-+.+.|.++.++.++.
T Consensus        80 --~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           80 --IERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             --HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence              22234445444431  122333444566666655544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.39  E-value=7e-07  Score=76.56  Aligned_cols=105  Identities=11%  Similarity=0.179  Sum_probs=68.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-----Hh-------cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-----KE-------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-----~~-------~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .++|+|||.|.||..+|..+...|+ +|.+||+++...+..     ..       ..+....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988888 999999976433221     00       123333566 778999999999842


Q ss_pred             Ch-----------hhhhc---chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577          103 TE-----------KTRGM---FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (221)
Q Consensus       103 ~~-----------~t~~~---i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al  142 (221)
                      ..           ++..+   +-++ +....+++++++++...-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~-i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEG-VKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHH-HHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           11111   1122 2223579999999875444444555544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.39  E-value=7.3e-08  Score=81.72  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=64.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc---eecCCHHhhc-CCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~---~~~~~l~ell-~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....+.....|.   ....+..+.+ +.+|+|++++|.. .+..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            68999999999999999999889999999987532222112231   1112334444 8899999999933 334333 2


Q ss_pred             HHHhcCCCCCEEEEcCCCCc
Q 027577          113 DRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~  132 (221)
                      +....++++++||.+..|=-
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~  100 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYG  100 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCC
T ss_pred             HHHHhhCCCCEEEEeccCcc
Confidence            34445678889999988743

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.39  E-value=7.9e-07  Score=76.73  Aligned_cols=66  Identities=23%  Similarity=0.369  Sum_probs=53.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+|.||+.+++.+... ++++. ++|+++...+ .++..|+..+.+++++++  ++|+|++|+|.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~   75 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPT   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999999999999876 67765 6888653332 344567777889999998  89999999994

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.38  E-value=8.1e-07  Score=77.00  Aligned_cols=67  Identities=15%  Similarity=0.299  Sum_probs=53.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhc--CCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTML--PKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell--~~aDvVv~~~p~~  103 (221)
                      .+|||||+|.||+.+++.++.. ++++. ++|+++...+ .++..|+..+.++++++  .++|+|++|+|..
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   77 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND   77 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence            5899999999999999999877 78855 6788654333 33456777788999999  6799999999953

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.38  E-value=5.4e-07  Score=76.27  Aligned_cols=96  Identities=15%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcC----ceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG----AKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g----~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+ .++..+    +... +++++.+++|+||.++|...
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~-~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQ-AFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEE-EGGGCCSCEEEEEECSCCCC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEe-eHHHhcCCCCEEEEcCcCCC
Confidence            346889999999999999999999999997 8999999753322 222222    2322 56666688999999999543


Q ss_pred             hhh-hcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTR-GMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~-~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ... ..+..   +.++++++++|+.-.
T Consensus       200 ~~~~~~l~~---~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          200 DGELPAIDP---VIFSSRSVCYDMMYG  223 (281)
T ss_dssp             ----CSCCG---GGEEEEEEEEESCCC
T ss_pred             CCCCCCCCH---HHhCcCCEEEEecCC
Confidence            211 11222   235566666666544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.38  E-value=2.1e-06  Score=73.27  Aligned_cols=107  Identities=17%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             CEEEEEccCHHHHH-HHHHHcc-CCCeEE-EEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      .+|||||+|.||+. +++.+.. -++++. ++|+++...+. ++..|+..+++++++..++|+|++++|.....     +
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-----~   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-----D   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-----H
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-----H
Confidence            58999999999997 8888765 467765 88987755443 44457766678887767899999999943221     2


Q ss_pred             HHHhcCCCCC-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga-~lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                      .....++.|. +++.- ..-.+-+.+.|.++.++..+.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            2223455666 44442 223344556688888777665

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.36  E-value=7.3e-07  Score=77.31  Aligned_cols=67  Identities=30%  Similarity=0.422  Sum_probs=53.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -.+|||||+|.||+.+++.+...  ++++. ++|+++...+ .++..++..+.+++++++  ++|+|++|+|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   85 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS   85 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence            46899999999999999999876  77855 7888654332 345568887889999996  89999999993

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.35  E-value=1.9e-06  Score=72.24  Aligned_cols=95  Identities=14%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcC----ceecCCHHhhc-CCCCEEEEeCCCChh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG----AKFEEDLDTML-PKCDIVVVNTPLTEK  105 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g----~~~~~~l~ell-~~aDvVv~~~p~~~~  105 (221)
                      .++.|+++.|+|.|.+|+++++.|...|.+|++++|+....+ .++..+    +.. .+++++. .++|+|+.++|....
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~-~~~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQA-LSMDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEE-CCSGGGTTCCCSEEEECCSCGGG
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeE-ecHHHhccCCCCEEEECCCCCCC
Confidence            467899999999999999999999999999999999753322 222222    222 2344444 589999999985432


Q ss_pred             hhhc--chHHHHhcCCCCCEEEEcCCCC
Q 027577          106 TRGM--FDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       106 t~~~--i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      . .+  +..   ..++++.+++|+.-..
T Consensus       194 ~-~~~~i~~---~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          194 G-DIPAIPS---SLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             T-CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred             C-CCCCCCH---HHcCCCCEEEEeccCC
Confidence            1 11  221   2356777888876654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1e-06  Score=77.75  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=66.8

Q ss_pred             EEEEEccCHHHHHHHHHHccCC--------CeEEEEcCCCCC--h---hHHHh--------------cCceecCCHHhhc
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKMD--P---QLEKE--------------TGAKFEEDLDTML   90 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G--------~~V~~~d~~~~~--~---~~~~~--------------~g~~~~~~l~ell   90 (221)
                      ||+|||.|.+|.++|..|...|        .+|..|.|.+..  .   +....              .++....++++++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999997654        358899875421  1   11110              1234557899999


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +++|+|++++| +...+.++ ++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            99999999999 33333333 34556788999999999983

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.33  E-value=2.1e-06  Score=72.34  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHhcC---ceecCCHHhhc-CCCCEEEEeCCCCh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG---AKFEEDLDTML-PKCDIVVVNTPLTE  104 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~~g---~~~~~~l~ell-~~aDvVv~~~p~~~  104 (221)
                      +.++.|+++.|+|.|.+|++++..|...|. +|.+++|+....+ .++..+   +... +++++- .++|+||.++|..-
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~-~~~~l~~~~~DivInaTp~gm  193 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS-RYEALEGQSFDIVVNATSASL  193 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE-CSGGGTTCCCSEEEECSSGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe-eHHHhcccCCCEEEECCCCCC
Confidence            346889999999999999999999999996 8999999754332 223322   2222 344443 78999999999432


Q ss_pred             hhh-hcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTR-GMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~-~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ... ..+..   +.++++.+++|+.-.
T Consensus       194 ~~~~~~i~~---~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          194 TADLPPLPA---DVLGEAALAYELAYG  217 (272)
T ss_dssp             GTCCCCCCG---GGGTTCSEEEESSCS
T ss_pred             CCCCCCCCH---HHhCcCCEEEEeecC
Confidence            111 11222   234566666665443

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.33  E-value=3.1e-06  Score=64.25  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             CCCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +-++|+|||.    |++|+.+++.|+..|++|+..++.....+   -.|...+.+++++-+..|++++++|. +....++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~---i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~   87 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL   87 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc---CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence            3578999999    89999999999999999777766411111   14777777899998899999999994 4455555


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      + +..+ .....++++.+-.    ++++.+..++..+.
T Consensus        88 ~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           88 P-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             H-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             H-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            3 3333 3334666654332    57788888877766

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.33  E-value=4.1e-06  Score=63.81  Aligned_cols=101  Identities=12%  Similarity=0.100  Sum_probs=72.9

Q ss_pred             CCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -++|+|||.    |++|..+++.|+..|++|+..++..  .+   -.|+..+.+++++....|++++++|. +....++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~--~~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY--EE---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SE---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC--Ce---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence            689999999    7999999999999999977776643  11   24777778899998899999999994 44444443


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       +..+ .....+++..  |.  .++++.+.+++..+.
T Consensus        96 -~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           96 -QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             -HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             -HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence             3333 2334555543  32  367788888887776

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.31  E-value=1.6e-06  Score=75.27  Aligned_cols=68  Identities=22%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             CCCEEEEEccCHHHH-HHHHHHccC-CCeEE-EEcCCCCCh-hHHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~-~iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .-.+|||||+|.||+ .+++.++.. +++|. ++|+++... +.++..|+..+.+++++++  +.|+|++|+|.
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~   99 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPA   99 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCc
Confidence            346899999999998 788888776 77765 678865333 3345568877789999996  58999999993

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.29  E-value=2e-06  Score=73.59  Aligned_cols=107  Identities=13%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             CEEEEEccCHHHHHH-HHHHccCCCeEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           37 KTVGTVGCGRIGKLL-LQRLKPFNCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        37 ~~vgIIG~G~iG~~i-A~~l~~~G~~V~-~~d~~~~~~~-~~~~~g~~-~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      .+|||||+|.||+.+ ++.+...+++++ ++|+++...+ .++..++. .+.+++++++  ++|+|++++|..  ...  
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~--~h~--   76 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNE--LHR--   76 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGG--GHH--
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChh--HhH--
Confidence            379999999999998 777766778865 6788653332 34455664 5678999987  599999999932  221  


Q ss_pred             hHHHHhcCCCCCEEEEc--CCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNN--ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~--srg~~vd~~al~~al~~g~i~  148 (221)
                       +.....++.|..++.-  .....-+.+.|.++.++..+.
T Consensus        77 -~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           77 -EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             -HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             -HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence             2223345567644432  122333345566666655444

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.29  E-value=5e-06  Score=73.07  Aligned_cols=97  Identities=23%  Similarity=0.310  Sum_probs=76.3

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCC----CCCh---------hHHHhcC-ceecCCHHhhcCCCCE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV----KMDP---------QLEKETG-AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~----~~~~---------~~~~~~g-~~~~~~l~ell~~aDv   95 (221)
                      +..+.+.+|.|+|.|.+|..+|+.+...|. +|+++|++    ....         ..+...+ .....+++++++.+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            347899999999999999999999999999 79999997    3221         1222211 1124579999999999


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      ++-+..     .+++.++.++.|+++++|+.+|+-..
T Consensus       267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            887642     37899999999999999999997553

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.28  E-value=3.6e-06  Score=70.03  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      -..++|+++|+|+||+.+++.  . ++++ .+|+  .+..    ++|+....++++++.++|+|+-|.+  .   ..+.+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~g----elgv~a~~d~d~lla~pD~VVe~A~--~---~av~e   75 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISK----DIPGVVRLDEFQVPSDVSTVVECAS--P---EAVKE   75 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCC----CCSSSEECSSCCCCTTCCEEEECSC--H---HHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cccc----ccCceeeCCHHHHhhCCCEEEECCC--H---HHHHH
Confidence            457899999999999999998  4 7875 5666  2222    2266667789999999999998886  2   23444


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCH---HHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~---~al~~al~~g~i~  148 (221)
                      .....|+.|.-+|-+|-|.+.|.   +.|.++.++|+-.
T Consensus        76 ~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           76 YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            45677899999999999888886   4566666666544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.27  E-value=2e-06  Score=74.00  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=69.6

Q ss_pred             CEEEEEccCHHHHHHHHHHc-c-CCCeE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~-~-~G~~V-~~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~~~~t~~~  109 (221)
                      .+|||||+|.||+.+++.++ . .++++ .++|+++...+ .++..|+ ..+.+++++++  ++|+|++|+|....    
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h----   84 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH----   84 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH----
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH----
Confidence            58999999999999999987 5 47775 56788653332 3344576 55678999986  69999999993222    


Q ss_pred             chHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhC-Cce
Q 027577          110 FDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSG-HIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g-~i~  148 (221)
                       -+.....++.|..++.-.  ...+-+.+.|.++.++. ++.
T Consensus        85 -~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           85 -PEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             -HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             -HHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence             122334456676554311  11222334577777776 665

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.26  E-value=5.9e-06  Score=70.97  Aligned_cols=72  Identities=17%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHH----h----cCc--e--ecCC---HHhhcCCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----E----TGA--K--FEED---LDTMLPKCD   94 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~----~----~g~--~--~~~~---l~ell~~aD   94 (221)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+.++    +    .++  .  ..++   +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            456899999999999999999999999999 8999999732222221    1    121  1  2223   445678999


Q ss_pred             EEEEeCCC
Q 027577           95 IVVVNTPL  102 (221)
Q Consensus        95 vVv~~~p~  102 (221)
                      +||.++|.
T Consensus       229 iIINaTp~  236 (315)
T 3tnl_A          229 IFTNATGV  236 (315)
T ss_dssp             EEEECSST
T ss_pred             EEEECccC
Confidence            99999984

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.26  E-value=3.9e-06  Score=72.09  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      .+|||||+|+||+.+++.+... ++++ .++|++... +. . .++..++++++++.++|+|++++|....     -+..
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~-~-~gv~~~~d~~~ll~~~DvViiatp~~~h-----~~~~   75 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DT-K-TPVFDVADVDKHADDVDVLFLCMGSATD-----IPEQ   75 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SS-S-SCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hh-c-CCCceeCCHHHHhcCCCEEEEcCCcHHH-----HHHH
Confidence            4899999999999999999776 5774 578886433 22 1 4666667888888889999999984322     2233


Q ss_pred             HhcCCCCCEEEEcCCCCc-c-CH-HHHHHHHHhCC
Q 027577          115 IAKMKKGVLIVNNARGAI-M-DT-QAVVDACSSGH  146 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~-v-d~-~al~~al~~g~  146 (221)
                      ...++.|..+|...-..+ + +. +.|.++.+++.
T Consensus        76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            455677887776554432 2 22 45666666554

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.25  E-value=2.1e-06  Score=74.03  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=51.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+|.||+.+++.+... ++++. ++|+++...+ .++..++ ..+.+++++++  ++|+|++|+|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   74 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST   74 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence            4899999999999999999775 67765 6788654332 3445566 36789999997  79999999993

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.25  E-value=6.9e-07  Score=76.21  Aligned_cols=106  Identities=17%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      .+|||||+|.||+.+++.+... ++++ .++|+++...+.+.+. +..+.+++++++  ++|+|++++|...  ..   +
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~--h~---~   84 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPAT--HA---E   84 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGG--HH---H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHH--HH---H
Confidence            5899999999999999999875 6774 5788864322221111 455678999985  7999999999322  21   2


Q ss_pred             HHHhcCCCCCE-EEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVL-IVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~-lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                      -....++.|.. ++.- ..-.+-+.+.|.++.++.++.
T Consensus        85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            22234556654 4442 122333445677776665544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.24  E-value=2.5e-06  Score=72.25  Aligned_cols=71  Identities=20%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHhc-------Cceec--CCHHhhcCCCCEEEEeC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKET-------GAKFE--EDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~~-------g~~~~--~~l~ell~~aDvVv~~~  100 (221)
                      .++.|+++.|+|.|.+|++++..|...|. +|.+++|+....+. ++..       .+...  +++++.++++|+||.++
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            46889999999999999999999999999 69999997543322 2211       12222  37788888999999999


Q ss_pred             CC
Q 027577          101 PL  102 (221)
Q Consensus       101 p~  102 (221)
                      |.
T Consensus       203 p~  204 (283)
T 3jyo_A          203 PM  204 (283)
T ss_dssp             ST
T ss_pred             CC
Confidence            94

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.24  E-value=3.8e-06  Score=71.82  Aligned_cols=107  Identities=14%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             CEEEEEccCHHHH-HHHHHHccC-CCeEEEEcCCCCChh-HHHhcCcee-cCCHHhhc-CCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLLYHDRVKMDPQ-LEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~-~iA~~l~~~-G~~V~~~d~~~~~~~-~~~~~g~~~-~~~l~ell-~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .+|||||+|.||+ .+++.+... ++++.++|+++...+ .++..++.. +.+..+++ +++|+|++++|..  ...   
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~--~h~---   77 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHS---   77 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCch--hHH---
Confidence            4899999999998 489988764 678778898654333 334556653 34555566 7899999999932  221   


Q ss_pred             HHHHhcCCCCC-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga-~lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                      +.....++.|. +++.- ..-.+-+.+.|.++.++.++.
T Consensus        78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            12223345565 45542 122333455677777777665

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.23  E-value=2e-06  Score=73.98  Aligned_cols=108  Identities=10%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~~~~t~~~  109 (221)
                      -.+|||||+|.||+.+++.++.. ++++. ++|+++...+ .++..++ ..+.+++++++  ++|+|++|+|......  
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~--   82 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS--   82 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH--
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH--
Confidence            35899999999999999999875 67766 6788654333 3445676 46789999997  7999999999432221  


Q ss_pred             chHHHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i~  148 (221)
                      +   ....++.|. +++.-- .-.+-+.++|.++.++.++.
T Consensus        83 ~---~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~  120 (330)
T 3e9m_A           83 A---AKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVF  120 (330)
T ss_dssp             H---HHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             H---HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            1   122333443 333321 22333445566666555544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.22  E-value=3.9e-06  Score=72.49  Aligned_cols=65  Identities=23%  Similarity=0.249  Sum_probs=50.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-----HHh---c----CceecCCHHhhcCCCCEEEEeC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-----EKE---T----GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-----~~~---~----g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .++|+|||.|.+|..+|..|...|+ +|..||+++...+.     ...   .    .+....++++.+++||+|+++.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            4699999999999999999988887 99999987643322     110   1    1333468888899999999998

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.21  E-value=4e-06  Score=71.51  Aligned_cols=65  Identities=15%  Similarity=0.319  Sum_probs=48.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhHHH-hc---------Ccee-cCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEK-ET---------GAKF-EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~-~~---------g~~~-~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.||..+|..|...|  .+|.++|+++...+... ..         .+.. ..++ +.+++||+|++++|.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            58999999999999999998878  68999998653222111 11         1232 3566 778999999999985

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.19  E-value=3.1e-06  Score=71.67  Aligned_cols=95  Identities=20%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-HhcCceecCCHHhhcCCCCEEEEeCCCC--hhh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLT--EKT  106 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~--~~t  106 (221)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+....+.. .......++++++ + ++|+||.++|..  +..
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~  194 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKE  194 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCC
Confidence            346889999999999999999999999998 899999975332222 1111122234444 4 899999999853  111


Q ss_pred             h-hcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 R-GMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~-~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      . ..+..+.   ++++.+++|+.-.
T Consensus       195 ~~~pi~~~~---l~~~~~v~DlvY~  216 (282)
T 3fbt_A          195 GESPVDKEV---VAKFSSAVDLIYN  216 (282)
T ss_dssp             TCCSSCHHH---HTTCSEEEESCCS
T ss_pred             ccCCCCHHH---cCCCCEEEEEeeC
Confidence            1 1133333   3566666666543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.18  E-value=5.1e-06  Score=72.18  Aligned_cols=68  Identities=24%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHc-c-CCCeEE-EEcCCCCChh-HHHhcC--ceecCCHHhhcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQ-LEKETG--AKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~-~-~G~~V~-~~d~~~~~~~-~~~~~g--~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .-.+|||||+|.||+..++.+. . -++++. ++|+++...+ .++..+  +..+.+++++++  +.|+|++|+|.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   97 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASN   97 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCc
Confidence            3468999999999999999987 4 477765 6888765433 344556  567789999986  59999999994

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.18  E-value=4.8e-06  Score=71.41  Aligned_cols=108  Identities=13%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~-~~~~l~ell~--~aDvVv~~~p~~~~t~~~  109 (221)
                      -.+|||||+|.||+.+++.++.. ++++. ++|+++...+ .++..++. .+.+++++++  ++|+|++++|....  .-
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--~~   82 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH--YK   82 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH--HH
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH--HH
Confidence            35899999999999999988765 55654 6788764433 44455764 6689999998  79999999993322  11


Q ss_pred             chHHHHhcCCCCCEEEE-cC-CCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGVLIVN-NA-RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn-~s-rg~~vd~~al~~al~~g~i~  148 (221)
                      +   ....++.|..++. -- .-.+-+.++|.++.++.++.
T Consensus        83 ~---~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~  120 (329)
T 3evn_A           83 V---AKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLF  120 (329)
T ss_dssp             H---HHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             H---HHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCE
Confidence            1   2233445544442 21 22333445566666665554

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.17  E-value=1.1e-05  Score=69.27  Aligned_cols=107  Identities=8%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             CEEEEEccCHHHH-HHHHHHccCCCeE-EEEcCCCCChh-HHHhc-CceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           37 KTVGTVGCGRIGK-LLLQRLKPFNCNL-LYHDRVKMDPQ-LEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        37 ~~vgIIG~G~iG~-~iA~~l~~~G~~V-~~~d~~~~~~~-~~~~~-g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      .+|||||+|.+|. .++..++..++++ .++|+++...+ .++.. ++..+.+++++++  +.|+|++|+|....     
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h-----   79 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR-----   79 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH-----
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH-----
Confidence            5899999999996 6777776678885 57888765444 34445 5666789999996  69999999993322     


Q ss_pred             hHHHHhcCCCCCE-EEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVL-IVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~-lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                      -+.....++.|.. ++.- ..-.+-+.++|.++.++.++.
T Consensus        80 ~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~  119 (336)
T 2p2s_A           80 AELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK  119 (336)
T ss_dssp             HHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence            1223334555653 4432 122223445566666655444

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.16  E-value=8.6e-06  Score=70.25  Aligned_cols=65  Identities=20%  Similarity=0.297  Sum_probs=49.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH-----Hh-------cCceecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-----KE-------TGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~-----~~-------~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .++|+|||.|.||..+|..+...|+ +|..||+++...+..     +.       ..+....++ +.+++||+|+++++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            3699999999999999999998898 999999976433210     10       123343577 77899999999983

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.15  E-value=3.6e-06  Score=71.80  Aligned_cols=102  Identities=18%  Similarity=0.269  Sum_probs=61.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCCeEE-EEcCCCCChhHHHhcCce--ecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -.+|||||+|+||+.+++.++. -++++. ++|+++...+   ..|+.  .++++.+. .++|+|++|+|.  ....   
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~---~~g~~~~~~~~l~~~-~~~DvViiatp~--~~h~---   79 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVP---FELQPFRVVSDIEQL-ESVDVALVCSPS--REVE---   79 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCH--HHHH---
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHH---HcCCCcCCHHHHHhC-CCCCEEEECCCc--hhhH---
Confidence            3589999999999999999976 467876 6888654332   24543  24455555 789999999992  2221   


Q ss_pred             HHHHhcCCCCCEEEEcCC--C-CccCHHHHHHHHHhCC
Q 027577          112 KDRIAKMKKGVLIVNNAR--G-AIMDTQAVVDACSSGH  146 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~sr--g-~~vd~~al~~al~~g~  146 (221)
                      +.....++.|..+++..-  + ...+.+.|.++.++..
T Consensus        80 ~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           80 RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            223345566777776532  1 1223345666655544

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.13  E-value=3.9e-06  Score=70.85  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=70.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcC----------ceecCCHHhhcCCCCEEEEeC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG----------AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g----------~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .++.|+++.|+|.|.||+++|+.|...| +|++++|+....+ ..+..+          +.. .++.+.+.++|+|+.++
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINAT  201 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECS
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECC
Confidence            4688999999999999999999999999 9999998643222 111111          111 23356678899999999


Q ss_pred             CCChhhh---hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          101 PLTEKTR---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       101 p~~~~t~---~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      |......   ..+.  ..+.++++++++|+.-.. ..+ .|.+..++.
T Consensus       202 g~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~  245 (287)
T 1nvt_A          202 PIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKV  245 (287)
T ss_dssp             CTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTT
T ss_pred             CCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHC
Confidence            8543210   0120  134577888899887643 222 344444433

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.13  E-value=7e-06  Score=70.87  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             CEEEEEccCHHHHH-HHH-HHcc-CCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCC--CCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKL-LLQ-RLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~-~l~~-~G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~~--aDvVv~~~p~~~~t~~~  109 (221)
                      .+|||||+|.||+. .+. .+.. -++++. ++|+++...+.+... ++..+.++++++++  .|+|++|+|.....   
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~---   79 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHF---   79 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHH---
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHH---
Confidence            48999999999996 565 4343 477765 788876544333333 66777899999976  89999999943221   


Q ss_pred             chHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCC
Q 027577          110 FDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~  146 (221)
                        +.....++.|..++.--  .-.+-+.++|.++.++..
T Consensus        80 --~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g  116 (345)
T 3f4l_A           80 --EYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKG  116 (345)
T ss_dssp             --HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence              22233455566665432  112223334555444433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.13  E-value=8.5e-06  Score=69.64  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             CEEEEEccCHHHHHHHHHHcc--CCCeEEEEcCCCCChhHHH---hc-------C--ceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK---ET-------G--AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~---~~-------g--~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.||..+|..|..  .|.+|.++|+++...+...   ..       .  +....++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            589999999999999999876  5789999999764333211   00       1  233356766 8999999999973

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.12  E-value=3.6e-06  Score=72.61  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=51.4

Q ss_pred             CEEEEEccCHHHHHHHHHHc-c-CCCeEE-EEcCCCCChh-HHHhcC--ceecCCHHhhcCC--CCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQ-LEKETG--AKFEEDLDTMLPK--CDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~-~-~G~~V~-~~d~~~~~~~-~~~~~g--~~~~~~l~ell~~--aDvVv~~~p~  102 (221)
                      .+|||||+|.||+.+++.+. . -++++. ++|+++...+ .++..+  ...++++++++++  +|+|++|+|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            48999999999999999987 5 467765 6788653333 344556  5677899999975  9999999993

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.11  E-value=6.8e-06  Score=70.50  Aligned_cols=73  Identities=19%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHH----Hh----cCc--e--ecCCH---HhhcCCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KE----TGA--K--FEEDL---DTMLPKCD   94 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~----~~----~g~--~--~~~~l---~ell~~aD   94 (221)
                      +.++.|+++.|+|.|.+|++++..|...|. +|.+++|+....+.+    ++    .+.  .  ...++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            346889999999999999999999999998 799999973222111    11    121  1  12343   45678899


Q ss_pred             EEEEeCCCC
Q 027577           95 IVVVNTPLT  103 (221)
Q Consensus        95 vVv~~~p~~  103 (221)
                      +||.++|..
T Consensus       223 iIINaTp~G  231 (312)
T 3t4e_A          223 ILTNGTKVG  231 (312)
T ss_dssp             EEEECSSTT
T ss_pred             EEEECCcCC
Confidence            999999953

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.10  E-value=6e-06  Score=74.05  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=71.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCCCCE
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDv   95 (221)
                      -.+|+|||+|-+|..+|..+...|++|+++|.++...+...                    .-.....++.++.++.||+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~  100 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA  100 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence            45899999999999999999999999999998653222111                    1123455688899999999


Q ss_pred             EEEeCCCChhh-------hhcc--hHHHHhcCC---CCCEEEEcCCCCccCHHHHHH
Q 027577           96 VVVNTPLTEKT-------RGMF--DKDRIAKMK---KGVLIVNNARGAIMDTQAVVD  140 (221)
Q Consensus        96 Vv~~~p~~~~t-------~~~i--~~~~~~~mk---~ga~lIn~srg~~vd~~al~~  140 (221)
                      +++|+| ||..       ..+.  .+..-+.|+   ++.+||.-|.-.+=..+.+..
T Consensus       101 ~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~  156 (444)
T 3vtf_A          101 TFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA  156 (444)
T ss_dssp             EEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred             eEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence            999998 4321       1111  122333343   688999999877755555443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.10  E-value=8.6e-06  Score=69.87  Aligned_cols=64  Identities=22%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHH-hc--------C--ceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK-ET--------G--AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~-~~--------g--~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.||..+|..|...|+  +|.++|+++...+... ..        .  +.. .+ .+.+++||+|++++|.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d-~~~~~~aDvViiav~~   77 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GD-YADLKGSDVVIVAAGV   77 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CC-HHHhCCCCEEEEccCC
Confidence            589999999999999999988888  9999998653222211 10        1  222 34 4567899999999985

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.10  E-value=5.6e-06  Score=66.75  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCceec----CC---HHhh-cCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~~---l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      ++|.|+|+|.+|+.+|+.|...|++|.++|+++...+.. ...++..+    .+   ++++ ++++|+|+++++....+ 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN-   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence            579999999999999999999999999999875433332 23344321    12   3343 67899999999854433 


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .+-......+.+...+|-..+
T Consensus        80 -~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           80 -LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             -HHHHHHHHHTSCCCEEEECCC
T ss_pred             -HHHHHHHHHHcCCCeEEEEEe
Confidence             222333333444455554433

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.09  E-value=7.5e-06  Score=62.32  Aligned_cols=91  Identities=12%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC-CChhHHH---hcCceec-------CCHHhh-cCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEK---ETGAKFE-------EDLDTM-LPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~---~~g~~~~-------~~l~el-l~~aDvVv~~~p~~  103 (221)
                      .++|.|+|+|.+|+.+++.|...|++|.++|+++ ...+...   ..++..+       ..++++ ++++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            5679999999999999999999999999999863 1111111   1233321       123444 78999999999854


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.+  +.-....+.+.+...+|...
T Consensus        83 ~~n--~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           83 ADN--AFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             HHH--HHHHHHHHHHTSSSCEEEEC
T ss_pred             HHH--HHHHHHHHHHCCCCEEEEEE
Confidence            333  22233444554444454433

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.07  E-value=9.2e-06  Score=70.50  Aligned_cols=107  Identities=18%  Similarity=0.308  Sum_probs=70.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeE-EEEcCCCCCh-hHHHhcC----ceecCCHHhhcC--CCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDP-QLEKETG----AKFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~-~~~~~~g----~~~~~~l~ell~--~aDvVv~~~p~~~~t~  107 (221)
                      .+|||||+|.||+.+++.+... ++++ .++|+++... ..++..+    ...+.+++++++  ++|+|++++|..  ..
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~--~h   84 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS--LH   84 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG--GH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH--HH
Confidence            5899999999999999988765 5665 5678765332 2334455    355678999986  599999999932  22


Q ss_pred             hcchHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCCce
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~i~  148 (221)
                         -+-....++.|..++.--  .-.+-+.++|.++.++.++.
T Consensus        85 ---~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           85 ---VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ---HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ---HHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence               122334566777655421  12233456678888777665

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.06  E-value=2e-05  Score=68.63  Aligned_cols=105  Identities=12%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++..  ..... ++..+.+++++++  +.|+|++|+|.....    
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~----   81 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEK--VKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHA----   81 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHH--HHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHH----
Confidence            58999999999997 77777665 67765 67875422  22233 5667789999997  799999999943221    


Q ss_pred             hHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~i~  148 (221)
                       +.....++.|..++.--  .-.+-+.++|.++.++..+.
T Consensus        82 -~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  120 (364)
T 3e82_A           82 -PLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL  120 (364)
T ss_dssp             -HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe
Confidence             12233445565555432  22333445566666655544

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.05  E-value=1.9e-05  Score=66.33  Aligned_cols=67  Identities=21%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCCh-hHHHhcCceecCCHHhhcCCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      .++++.|+|.|.+|++++..|...|. +|.+++|+.... +.++..+.....++.  +.++|+||.++|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g  186 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG  186 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence            47899999999999999999999998 799999975332 233344443222222  46899999999954

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.05  E-value=1.2e-05  Score=66.54  Aligned_cols=81  Identities=7%  Similarity=0.054  Sum_probs=57.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      +||+|+|+|+||+.+++.+...+.++. ++|++..     ...++..++++++++ ++|+|+-+++  |+..    .+.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~-----~~~gv~v~~dl~~l~-~~DVvIDft~--p~a~----~~~~   71 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK-----ATTPYQQYQHIADVK-GADVAIDFSN--PNLL----FPLL   71 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC--HHHH----HHHH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc-----ccCCCceeCCHHHHh-CCCEEEEeCC--hHHH----HHHH
Confidence            689999999999999999987655755 4787653     135777778899988 9999885543  2211    1233


Q ss_pred             hcCCCCCEEEEcCCC
Q 027577          116 AKMKKGVLIVNNARG  130 (221)
Q Consensus       116 ~~mk~ga~lIn~srg  130 (221)
                      . ++.|.-+|..+.|
T Consensus        72 ~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           72 D-EDFHLPLVVATTG   85 (243)
T ss_dssp             T-SCCCCCEEECCCS
T ss_pred             H-HhcCCceEeCCCC
Confidence            3 7788878877676

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=98.04  E-value=1e-05  Score=72.44  Aligned_cols=111  Identities=17%  Similarity=0.162  Sum_probs=78.9

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEc----CC--CCChhH---HHh--------cCce-ecCCHHhh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHD----RV--KMDPQL---EKE--------TGAK-FEEDLDTM   89 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d----~~--~~~~~~---~~~--------~g~~-~~~~l~el   89 (221)
                      +..+.++++.|+|.|..|+++++.|...|.   +|+++|    |+  ....+.   +..        .+.. ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            346889999999999999999999999998   799999    76  111111   111        1110 13468899


Q ss_pred             cCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      ++++|+|+.++|..+   +++.++.++.|+++.++++++  .+..+.-+.++.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLy--nP~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLA--NPVPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECC--SSSCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECC--CCCCcchHHHHHHcCC
Confidence            999999999998421   455556778899999999994  3344555555666564

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.04  E-value=7e-06  Score=71.54  Aligned_cols=107  Identities=18%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC------ceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG------AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g------~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      +-+.+||+|+|+|.+|+.+|+.|.. ..+|.+.|++....+...+..      +.-.+++.++++++|+|+.++|..  .
T Consensus        13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~--~   89 (365)
T 3abi_A           13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF--L   89 (365)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG--G
T ss_pred             cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc--c
Confidence            3446689999999999999999976 478999998653333332211      111234677889999999999932  2


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      ...+.   -.+++.|..+++++ ...-...+|.+..++..
T Consensus        90 ~~~v~---~~~~~~g~~yvD~s-~~~~~~~~l~~~a~~~g  125 (365)
T 3abi_A           90 GFKSI---KAAIKSKVDMVDVS-FMPENPLELRDEAEKAQ  125 (365)
T ss_dssp             HHHHH---HHHHHHTCEEEECC-CCSSCGGGGHHHHHHTT
T ss_pred             cchHH---HHHHhcCcceEeee-ccchhhhhhhhhhccCC
Confidence            21122   23345677888876 22233344444444433

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.04  E-value=3e-06  Score=74.77  Aligned_cols=84  Identities=19%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCC---eEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ..-+|.|||. |..|+..++.++.+|.   .|.++|++...      .|..    + +.+.++|+||.|+......-.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~----~-~~i~~aDivIn~vlig~~aP~Lv  281 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGP----F-DEIPQADIFINCIYLSKPIAPFT  281 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSC----C-THHHHSSEEEECCCCCSSCCCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCc----h-hhHhhCCEEEECcCcCCCCCccc
Confidence            3568999999 9999999999999998   89999975311      1221    2 23558999999998766666789


Q ss_pred             hHHHHhcC-CCCCEEEEcCC
Q 027577          111 DKDRIAKM-KKGVLIVNNAR  129 (221)
Q Consensus       111 ~~~~~~~m-k~ga~lIn~sr  129 (221)
                      .++.++.| |+|++|||++-
T Consensus       282 t~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          282 NMEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             CHHHHCCTTCCCCEEEETTC
T ss_pred             CHHHHhcCcCCCeEEEEEec
Confidence            99999999 99999999963

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.03  E-value=1.4e-05  Score=69.50  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCC--CCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~~--aDvVv~~~p~  102 (221)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++..  ..+.. ++..+.++++++++  .|+|++|+|.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKERYPQASIVRSFKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGTTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHHhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            58999999999997 77777665 67765 67876533  33444 56777899999976  9999999993

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.02  E-value=1.4e-05  Score=69.07  Aligned_cols=65  Identities=18%  Similarity=0.356  Sum_probs=50.0

Q ss_pred             CEEEEEccCHHHH-HHHHHHccC-CCeEE-EEcCCCCChhHHHh---cCceecCCHHhhcCC--CCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKE---TGAKFEEDLDTMLPK--CDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~---~g~~~~~~l~ell~~--aDvVv~~~p~  102 (221)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++ ...+.++.   .++..+.++++++++  .|+|++|+|.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   75 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA   75 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999998 577777665 67764 67876 34444444   466777899999976  9999999994

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.02  E-value=7.1e-06  Score=70.45  Aligned_cols=66  Identities=14%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC---Ce-EEEEcCCCCCh-hHHHhcCc-eecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G---~~-V~~~d~~~~~~-~~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+|.||+.+++.++..+   ++ +.++|++.... +.++..++ ..+.+++++++  +.|+|++++|.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   76 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQH   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence            48999999999999999998654   45 44678764332 34455676 45789999996  69999999993

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.02  E-value=1.8e-05  Score=68.61  Aligned_cols=67  Identities=21%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC--------CCeE-EEEcCCCCChh-HHHhcCce-ecCCHHhhcC--CCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF--------NCNL-LYHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~--------G~~V-~~~d~~~~~~~-~~~~~g~~-~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      --+|||||+|.||+..++.++..        +++| .++|+++...+ .++++++. .+++++++++  +.|+|++|+|.
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            34899999999999888877543        4664 46788765544 45566764 6789999985  58999999993

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.00  E-value=2.1e-05  Score=67.22  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhc-CceecCCHHhhc----------CCCCEEEEeCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML----------PKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~-g~~~~~~l~ell----------~~aDvVv~~~p  101 (221)
                      .+|||||+ |.||+..++.++..+.++ .++|+++......+.. +...+.++++++          ++.|+|++|+|
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            58999999 789999999998888874 5678876543333332 456678899987          67999999999

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.99  E-value=5.3e-06  Score=72.14  Aligned_cols=66  Identities=23%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             CCEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHH-Hhc-CceecCCHHhhcC--CCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLE-KET-GAKFEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~-~~~-g~~~~~~l~ell~--~aDvVv~~~p  101 (221)
                      ..+|||||+|.||+. +++.++.. ++++. ++|+++...+.+ +.. +...+.+++++++  +.|+|++|+|
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   77 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP   77 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence            358999999999995 88888765 67765 778865433322 333 3556789999996  4699999999

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.98  E-value=3.5e-05  Score=66.23  Aligned_cols=64  Identities=22%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH----HHh----c----CceecCCHHhhcCCCCEEEEeC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL----EKE----T----GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~----~~~----~----g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+||+|||.|.||..+|..+...|+ +|..+|.++...+.    ...    .    .+....++ +.+++||+|+++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3689999999999999999988888 89999987643221    010    1    13333577 7789999999998

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.98  E-value=7.8e-06  Score=72.72  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CC---HHhh-cCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      +++|.|+|+|.+|+.+++.|...|.+|+++|+++...+.++..|+..+    .+   ++++ +.++|+|+++++..+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            457999999999999999999999999999987655555555565322    22   2333 678999999998544433


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .  -......+.+...+|--++
T Consensus        84 ~--i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           84 Q--LTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             H--HHHHHHHHCTTCEEEEEES
T ss_pred             H--HHHHHHHhCCCCeEEEEEC
Confidence            2  2334555666655554433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.98  E-value=2.6e-05  Score=66.38  Aligned_cols=94  Identities=14%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh--HHH-hcC------ce--ecCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ--LEK-ETG------AK--FEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~--~~~-~~g------~~--~~~~l~ell~~aDvVv~~~p  101 (221)
                      ..++|+|||.|.||..+|..|...|+  +|.++|++....+  ..+ ..+      ..  ...+. +.++.+|+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence            35799999999999999999998898  9999998642222  111 111      11  11243 56789999999995


Q ss_pred             CChhh-----------hh---cchHHHHhcCCCCCEEEEcCCC
Q 027577          102 LTEKT-----------RG---MFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       102 ~~~~t-----------~~---~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .....           ..   -+-++ +....+++++|+++-|
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~-i~~~~~~~~vi~~~Np  126 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPN-LVKVAPNAIYMLITNP  126 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHH-HHHHCTTSEEEECCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEecCc
Confidence            32110           00   11112 2223688999988665

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.97  E-value=1.6e-05  Score=70.93  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             CEEEEEccCHHHH-HHHHHHccC-CCeE-EEEcCCCCChh-HHHhcCce-----ecCCHHhhcC--CCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNL-LYHDRVKMDPQ-LEKETGAK-----FEEDLDTMLP--KCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~-~iA~~l~~~-G~~V-~~~d~~~~~~~-~~~~~g~~-----~~~~l~ell~--~aDvVv~~~p~~~~  105 (221)
                      .+|||||+|.||+ .+++.+... ++++ .++|++....+ .++..|+.     .+.+++++++  ++|+|++++|... 
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~-  162 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL-  162 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG-
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh-
Confidence            5899999999997 899988765 5675 57787653322 33445653     4678999987  7999999999322 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCCce
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~i~  148 (221)
                       .   -+.....++.|..|+.--  .-.+-+.+.|.++.++.++.
T Consensus       163 -h---~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          163 -H---AEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             -H---HHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             -H---HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence             2   122233455666444321  12223344566666554444

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.97  E-value=2.4e-05  Score=67.02  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeE-EEEcCCCCChhHHHhc-CceecCCHHhhc-----------CCCCEEEEeCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML-----------PKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~-g~~~~~~l~ell-----------~~aDvVv~~~p~  102 (221)
                      .+|||||+ |.||+..++.++..+.++ .++|+++......... +...+.++++++           ++.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 789999999998888874 5678776543333333 456677899887           569999999993

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.97  E-value=1.5e-05  Score=68.89  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCCCCh
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p~~~  104 (221)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++...+ ....++..+.++++++++  .|+|++|+|...
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   79 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT   79 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            58999999999997 78877765 67765 6777542221 111245667899999965  999999999443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.96  E-value=1.5e-05  Score=67.88  Aligned_cols=113  Identities=17%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHhc--------Ccee-cCCHHhhcCCCCEEEEeCCCCh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKF-EEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~~-~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      +||+|||.|.||..+|..+...|+  +|.++|+++...+. ..+.        .... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            589999999999999999998898  99999986432211 1111        1111 134 356899999999995322


Q ss_pred             h-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 027577          105 K-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (221)
Q Consensus       105 ~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a  150 (221)
                      .           +..++..  +.+....|++++|+++-..-+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           1111110  12233368999998765433333334444444455444

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.93  E-value=3.1e-05  Score=69.21  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeE-EEEcCCCCChhHHH----hcC---ceecC----CHHhhcC--CCCEEEEeC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEK----ETG---AKFEE----DLDTMLP--KCDIVVVNT  100 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~----~~g---~~~~~----~l~ell~--~aDvVv~~~  100 (221)
                      -.+|||||+|.||+..++.+... +++| .++|+++...+.+.    +.|   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988765 6775 46787654333222    234   45566    8999997  599999999


Q ss_pred             CC
Q 027577          101 PL  102 (221)
Q Consensus       101 p~  102 (221)
                      |.
T Consensus       100 p~  101 (444)
T 2ixa_A          100 PW  101 (444)
T ss_dssp             CG
T ss_pred             Cc
Confidence            93

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.92  E-value=1.6e-05  Score=64.65  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=58.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CC---HHhh-cCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      .+++.|+|+|.+|+.+++.|...|+ |+++|+++...+.+. .++..+    .+   ++++ ++++|.|++++|..+.+ 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   85 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET-   85 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH-
Confidence            5689999999999999999999999 999998754333333 444321    22   2333 78899999999854333 


Q ss_pred             hcchHHHHhcCCCCCEEEE
Q 027577          108 GMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn  126 (221)
                       +.-....+.+.++..+|.
T Consensus        86 -~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           86 -IHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             -HHHHHHHHHHCSSSEEEE
T ss_pred             -HHHHHHHHHHCCCCeEEE
Confidence             333344555667644443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.90  E-value=3.9e-05  Score=65.19  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=64.4

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||++.|||-++ +|+.+|..|...++.|..+....              .++.+.+++||+|+.++.    ..++
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G----~p~~  235 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVG----KAEL  235 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSC----STTC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccC----CCCc
Confidence            4579999999999765 79999999999999999887532              368888999999999986    2345


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+   ..|+|+++||++--
T Consensus       236 i~~d---~vk~GavVIDVGin  253 (303)
T 4b4u_A          236 IQKD---WIKQGAVVVDAGFH  253 (303)
T ss_dssp             BCGG---GSCTTCEEEECCCB
T ss_pred             cccc---cccCCCEEEEecee
Confidence            6654   46899999999853

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.89  E-value=2e-05  Score=67.86  Aligned_cols=65  Identities=17%  Similarity=0.281  Sum_probs=48.7

Q ss_pred             EEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCC-hhHHHhcCce-ecCCHHhhcC--CCCEEEEeCCC
Q 027577           38 TVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMD-PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        38 ~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~-~~~~~~~g~~-~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      ||||||+|.||+. ++..++.. +++|. ++|+++.. .+.++++|+. .+++++++++  +.|+|++|+|.
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~   96 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT   96 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence            8999999999986 46667654 67765 57876533 2345567774 5789999984  58999999993

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.89  E-value=2.6e-05  Score=68.39  Aligned_cols=111  Identities=13%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC--CCeEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -.||||||+| +|+..++.++..  ++++. ++|++... .+.+++.|+..++++++++++.|++++++|...... .--
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~-~~~   84 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGG-AGT   84 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTS-HHH
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccch-hHH
Confidence            4589999999 799988888765  57755 56876533 345667899888999999999999999999432100 001


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +-....|+.|.-|+.=-=-.+-+.++|.++.++.++.
T Consensus        85 ~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~  121 (372)
T 4gmf_A           85 QLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCC  121 (372)
T ss_dssp             HHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCE
Confidence            1122334445444332111222344566666655555

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.89  E-value=3.5e-05  Score=65.22  Aligned_cols=105  Identities=14%  Similarity=0.161  Sum_probs=70.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..+|+|+|+ |++|+.+++.+...|++++ .+|+.....   ...|+..+.+++++.+  ..|++++++|. +.....+ 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~---~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~-   81 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSI-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHH-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc---eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHH-
Confidence            568999998 9999999999988899843 566642111   1357777889999998  89999999992 2222222 


Q ss_pred             HHHHhcCCCC-CEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKG-VLIVNNARGAI-MDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~g-a~lIn~srg~~-vd~~al~~al~~g~i~  148 (221)
                      .+..+   .| ..+|..+-|-. -+.+.+.++.++..+.
T Consensus        82 ~ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           82 LEAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22332   33 23455555532 2345788888876665

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.88  E-value=2.8e-05  Score=66.36  Aligned_cols=92  Identities=13%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCCh----hHHHh--cCceecCCHHhhcCCCCEEEEeCCCCh---
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP----QLEKE--TGAKFEEDLDTMLPKCDIVVVNTPLTE---  104 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~----~~~~~--~g~~~~~~l~ell~~aDvVv~~~p~~~---  104 (221)
                      .+||+|||.|.||..+|..+...|.  +|..+|.++...    +....  ..+....++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3799999999999999999887777  899999875321    11111  123444577 66899999999973210   


Q ss_pred             -------hhhhc---chHHHHhcCCCCCEEEEcCC
Q 027577          105 -------KTRGM---FDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 -------~t~~~---i~~~~~~~mk~ga~lIn~sr  129 (221)
                             .+..+   +-++ +....|++++++++-
T Consensus        93 tR~dl~~~n~~i~~~i~~~-i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPA-LGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHHhCCCeEEEEcCC
Confidence                   11111   1112 222348999999776

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.88  E-value=3.6e-05  Score=65.41  Aligned_cols=98  Identities=20%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---c--C--ceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---T--G--AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~--g--~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      +||+|||.|.||.++|..|...|.  +|..+|+++...+     ..+.   .  .  +....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999988787  8999998653221     1111   1  1  223345 7889999999999753


Q ss_pred             Chh-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHH
Q 027577          103 TEK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus       103 ~~~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~a  137 (221)
                      ...           +..++..  +.+....|++++++++  .++|.-.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t  125 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT  125 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence            211           1111111  2344457899999998  5666433

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.86  E-value=0.00011  Score=62.89  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC-C-hhH-HHhc--CceecCCHHhhcCCCCEEEEeC----CC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQL-EKET--GAKFEEDLDTMLPKCDIVVVNT----PL  102 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~~-~~~~--g~~~~~~l~ell~~aDvVv~~~----p~  102 (221)
                      .+.|.||++|| .+++.++++..+..+|++|.+..|... . .+. .+..  ++....+++++++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            58899999999 679999999999999999999987532 1 121 1122  3456789999999999998754    10


Q ss_pred             ---Ch-----hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 ---TE-----KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ---~~-----~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                         .+     -...-++.+.++.+|++++|+.+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence               00     012346888888889999888864

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.84  E-value=1.6e-05  Score=71.37  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             CCCEEEEEccCHH--HHHHHHHHcc----CCCeEEEEcCCCCChhHHHh---------cCceecCCHHhhcCCCCEEEEe
Q 027577           35 EGKTVGTVGCGRI--GKLLLQRLKP----FNCNLLYHDRVKMDPQLEKE---------TGAKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~G~i--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~---------~g~~~~~~l~ell~~aDvVv~~   99 (221)
                      +.+||+|||.|++  |..++..+..    .| +|..||+.+...+....         ..+....+++++++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999996  6788877653    46 99999986532221111         1244567899999999999999


Q ss_pred             CCC
Q 027577          100 TPL  102 (221)
Q Consensus       100 ~p~  102 (221)
                      ++.
T Consensus        83 irv   85 (450)
T 3fef_A           83 ILP   85 (450)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            963

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.83  E-value=1.1e-05  Score=72.85  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHH-hcCcee--c-----CCHHhhcCCCCEEEEeCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEK-ETGAKF--E-----EDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~-~~g~~~--~-----~~l~ell~~aDvVv~~~p  101 (221)
                      ...+.+++|+|+|.|.+|+.+++.|... |.+|.+++|+....+... ..++..  .     +++.++++.+|+|+.++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            4568899999999999999999999877 789999999753322222 223321  1     145567789999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ....  .-+..   ..++++..+++++--.. +...|.++.++.
T Consensus        98 ~~~~--~~v~~---a~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~a  135 (467)
T 2axq_A           98 YTFH--PNVVK---SAIRTKTDVVTSSYISP-ALRELEPEIVKA  135 (467)
T ss_dssp             GGGH--HHHHH---HHHHHTCEEEECSCCCH-HHHHHHHHHHHH
T ss_pred             hhhh--HHHHH---HHHhcCCEEEEeecCCH-HHHHHHHHHHHc
Confidence            4321  11222   23455677777643111 234455544443

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.82  E-value=0.00019  Score=62.10  Aligned_cols=96  Identities=15%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCCh-h-H-------HHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~-~-------~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++|| .+++.++++..+..+|++|.+..|....+ + .       ++..|  +....+++++++++|+|..-.
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence            48999999999 57899999999999999999998864222 1 1       12345  455689999999999998754


Q ss_pred             CCCh------h-----hhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTE------K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~------~-----t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      =...      +     ...-++.+.++.+|++++|+.+.
T Consensus       256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            2211      0     12346888888889999988875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.81  E-value=6.4e-05  Score=64.74  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=72.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++...+.++++|...+ .+.+++.+..|+|+-++....     .-..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            5899999999999999999999999999999988888888888886532 344444457999998887321     2345


Q ss_pred             HHhcCCCCCEEEEcCCCC
Q 027577          114 RIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~  131 (221)
                      .+..++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            678899999999987543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.81  E-value=8.6e-05  Score=60.63  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhcCceec--CCHHhhcCCCCEEEEeCCCChh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..+|.|++|.|||.|.+|..-++.|...|.+|+++++... .+.   ....++...  .-.++.+..+|+|+.++. +++
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~-~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~  103 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS-AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQA  103 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC-HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHH
Confidence            3479999999999999999999999999999999998542 221   122223321  112356788999987765 333


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .    +.......+ -.++||+.
T Consensus       104 ~----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          104 V----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             H----HHHHHHHSC-TTCEEEC-
T ss_pred             H----HHHHHHHHh-CCCEEEEe
Confidence            2    333333345 45778874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.80  E-value=5.9e-05  Score=60.92  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc-eec-----CCHHhhcCCCCEEEEeCCCC
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFE-----EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~-----~~l~ell~~aDvVv~~~p~~  103 (221)
                      ...+.||+|.|.|. |.||+.+++.|...|++|++.+|++...+.....++ ..+     +++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            45799999999996 999999999999999999999997654443333344 321     45678888999999887643

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.80  E-value=4.1e-05  Score=69.25  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCEEEEEcc----CHHHHHHHHHHccC--CCeE-EEEcCCCCChh-HHHhcCce---ecCCHHhhcC--CCCEEEEeCC
Q 027577           36 GKTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~----G~iG~~iA~~l~~~--G~~V-~~~d~~~~~~~-~~~~~g~~---~~~~l~ell~--~aDvVv~~~p  101 (221)
                      -.+|||||+    |.||+..++.++..  +++| .++|+++...+ .++..|+.   .+.+++++++  +.|+|++|+|
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp  117 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK  117 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence            358999999    99999999999876  6775 46787653332 34455653   6789999995  6999999999

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.79  E-value=2.3e-05  Score=69.10  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---------CCeEE-EEcCCCCCh-hHHHhcCc-eecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---------G~~V~-~~d~~~~~~-~~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+|.||+..++.++..         +.+|. ++|+++... +.+++.++ ..+.+++++++  +.|+|++|+|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999998888653         34654 568765333 34456676 46689999995  58999999993

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.79  E-value=0.00028  Score=60.21  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCCCh-h-H---HH----hcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~~-~-~---~~----~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.||++||=|  ++.++++..+..+|++|.+..|....+ + .   ++    +.|  +....+++++++++|+|...
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            5889999999975  999999999999999999999864322 1 2   11    445  55578999999999999884


Q ss_pred             CCC-------Chh-----hhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 TPL-------TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~p~-------~~~-----t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .=.       .++     ...-++.+.++.+|++++|+.+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            320       011     12346778888888888888764

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.79  E-value=0.0003  Score=59.85  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceecCCHHhhcCCCCEEEEeCCCC------
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT------  103 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~------  103 (221)
                      .+.|.||++||= +++.++++..+..+|++|.+..|....+  +......+....+++++++++|+|....=..      
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            588999999995 8999999999999999999999865322  2223334666789999999999998843210      


Q ss_pred             -hh-----hhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 -EK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 -~~-----t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       .+     ...-++.+.++.+|++++|+.+.
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl  261 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCL  261 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence             01     12346788888889999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.79  E-value=9.3e-05  Score=63.45  Aligned_cols=98  Identities=12%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh-----cCceec-CCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE-----TGAKFE-EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~-----~g~~~~-~~l~ell~~aDvVv~~~p~~  103 (221)
                      ++|+|||.|.||.++|..+...|+  +|..+|+++...+     ..+.     ...... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  8999998764322     1110     122221 24567899999999997632


Q ss_pred             hh-----------hhhcch--HHHHhcCCCCCEEEEcCCCCccCHH
Q 027577          104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQ  136 (221)
Q Consensus       104 ~~-----------t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~~  136 (221)
                      ..           +..++.  .+.+....|++++++++  .++|.-
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  124 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVM  124 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHH
Confidence            11           111111  12334457899999997  445443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.78  E-value=0.00014  Score=62.63  Aligned_cols=95  Identities=15%  Similarity=0.245  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----HHHh-----cC--ceecCCHHhhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----~~~~-----~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      ...++|+|||.|.||..+|..+...|+ +|..+|+.+...+     ..+.     ..  +....+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999988888 9999998764321     1111     12  2333455 7899999999997


Q ss_pred             CCC--hh---------hhhcchH--HHHhcCCCCCEEEEcCC
Q 027577          101 PLT--EK---------TRGMFDK--DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       101 p~~--~~---------t~~~i~~--~~~~~mk~ga~lIn~sr  129 (221)
                      +..  +.         +..++..  +.+....|++++++++.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            521  11         1111110  12333468999999973

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.77  E-value=4.1e-05  Score=66.40  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--CCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVv~~~p~~  103 (221)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++  ....+.. ++..+.+++++++  +.|+|++|+|..
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   76 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSG   76 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence            58999999999997 78877765 67765 667754  2233344 5677789999997  799999999943

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.77  E-value=6e-05  Score=64.95  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH----HHh------cCceecCCHHhhcCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL----EKE------TGAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~----~~~------~g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      .++|+|||.|.||.++|..|...|.  +|..+|+.....+.    +..      .++....+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5799999999999999999988776  89999985422211    111      12222223346789999999997531


Q ss_pred             --hh-hh-hcc--h----H---HHHhcCCCCCEEEEcCCCCccCH
Q 027577          104 --EK-TR-GMF--D----K---DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       104 --~~-t~-~~i--~----~---~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                        +. ++ .++  +    .   +.+....|++++++++  .++|.
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd~  127 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVDI  127 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHHH
Confidence              11 11 111  1    1   2233456899999997  44543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.77  E-value=5.2e-06  Score=68.86  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             HHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCC-------------------Ch
Q 027577           13 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-------------------DP   72 (221)
Q Consensus        13 ~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~-------------------~~   72 (221)
                      +.++++-..|....    ...|.+++|.|||+|.+|..+|+.|...|. ++.++|+...                   +.
T Consensus        12 y~Rq~~l~~~g~~~----q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka   87 (249)
T 1jw9_B           12 YNRQIILRGFDFDG----QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV   87 (249)
T ss_dssp             THHHHTSTTTHHHH----HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hhheecccccCHHH----HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH
Confidence            34555545575322    235889999999999999999999999997 7999998651                   11


Q ss_pred             hHH----Hhc--Cc--ee----c--CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEc
Q 027577           73 QLE----KET--GA--KF----E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus        73 ~~~----~~~--g~--~~----~--~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      +.+    ...  ++  ..    .  .+++++++++|+|+.+++ +.+++..++....+.   +..+|+.
T Consensus        88 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B           88 ESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            111    111  11  11    1  134567889999999986 567777776655442   3445554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.77  E-value=1.8e-05  Score=69.45  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             CEEEEEccC-HHHHHHHHHHccC-CCeEE-EEcCCCCCh-hHHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCG-RIGKLLLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G-~iG~~iA~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      .+|||||+| .||..++..+... ++++. ++|+++... +.++..|+..+.+++++++  +.|+|++++|.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~   74 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPH   74 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCc
Confidence            589999999 9999999988765 56755 678765332 3445568887889999996  59999999993

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.76  E-value=0.00041  Score=59.43  Aligned_cols=96  Identities=14%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC-hh-H---HH----hcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ-L---EK----ETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~-~---~~----~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++||= +++.++++..+..+|++|.+..|.... .+ .   ++    +.|  +....+++++++++|+|....
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            588999999995 899999999999999999999986432 21 2   11    445  455789999999999998844


Q ss_pred             CC-------Chh-----hhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PL-------TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~-------~~~-----t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      =.       .++     ...-++.+.++..|++++|+.+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            21       111     12346788888889999888864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.76  E-value=3.3e-05  Score=69.34  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcC-cee----cC---CHHhhcCCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG-AKF----EE---DLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g-~~~----~~---~l~ell~~aDvVv~~~p~~  103 (221)
                      .+++|+|+|.|.||+.+++.|...|.+|.+++|+....+.. ...+ +..    ..   +++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            47899999999999999999999999999999864322211 1111 211    12   3457788999999999853

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.76  E-value=4e-05  Score=65.66  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH-----HHhc-----CceecCCHHhhcCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-----EKET-----GAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-----~~~~-----g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      -+||+|||.|.||.++|..++..|.  +|.++|+++...+.     .+..     .+....+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999976664  79999986431111     1110     1111123456789999999997643


Q ss_pred             hhh-----------hhcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577          104 EKT-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       104 ~~t-----------~~~i~--~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ..-           ..++.  .+.+....|++++++++.  ++|.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~  128 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDI  128 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHH
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHH
Confidence            210           01110  012233358899999743  5554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.76  E-value=3.3e-05  Score=66.56  Aligned_cols=67  Identities=24%  Similarity=0.405  Sum_probs=51.2

Q ss_pred             CCEEEEEccC-HHHHHHHHHHccC--CCeE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--CCCEEEEeCCC
Q 027577           36 GKTVGTVGCG-RIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G-~iG~~iA~~l~~~--G~~V-~~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -.+|||||+| .+|+..+..++..  ++++ .++|+++...+ .++..++ ..+.+++++++  +.|+|++++|.
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   92 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   92 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            3589999999 8999999999876  5675 56787653332 3445566 66789999985  69999999993

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.76  E-value=7e-05  Score=63.44  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .++|+|+|+ |++|+.+++.++..|++++ .+++.....   ...|+..+.+++++.+  .+|++++++|. +.+...+ 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-   81 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH-
Confidence            578999998 9999999999988899843 566643111   1357777889999988  89999999992 2222223 


Q ss_pred             HHHHhcCCCCC-EEEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGV-LIVNNARGAI-MDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga-~lIn~srg~~-vd~~al~~al~~g~i~  148 (221)
                      .+..+   .|. .+|..+.|=. .+++.+.+..++..+.
T Consensus        82 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           82 LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22322   232 2555665522 3455788888776665

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.75  E-value=6.8e-05  Score=65.99  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=100.9

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC-----C-C-h-----hHHHhcC-ceecCCHHhhcCCCCEE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-----M-D-P-----QLEKETG-AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~-----~-~-~-----~~~~~~g-~~~~~~l~ell~~aDvV   96 (221)
                      +..+...||.|+|.|..|..+|+.+..+|. +|+++|++.     . . .     ..+.... .....+++|+++.+|++
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            457889999999999999999999999999 899999863     1 0 1     1111111 11134689999999988


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP  176 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tP  176 (221)
                      +=+.     ..+++.++.++.|+++++|+.+|+-..  |-.=.++.+.|... .+.=.       ++.| -+..|+++-|
T Consensus       263 IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i-~atGr-------s~~p-~Q~NN~~~FP  326 (398)
T 2a9f_A          263 IGVS-----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYI-VGTGR-------SDFP-NQINNVLAFP  326 (398)
T ss_dssp             EECC-----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSE-EEESC-------TTSS-SBCCGGGTHH
T ss_pred             EecC-----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeE-EEeCC-------CCCC-CcCCceeEcc
Confidence            7553     247899999999999999999998654  22222233345532 22221       1111 3445777777


Q ss_pred             CCCcCCHH-------HHHHHHHHHHHHHHHcCCCC
Q 027577          177 HVSGTTID-------LRYAAGVKDMLDRYFKGEDF  204 (221)
Q Consensus       177 H~a~~t~~-------~~~~~~~~~~~~~~~~g~~~  204 (221)
                      =++-....       +.|.....+.|..+...+.+
T Consensus       327 gi~~Gal~~~a~~I~d~m~~aAa~alA~~~~~~~~  361 (398)
T 2a9f_A          327 GIFRGALDARAKTITVEMQIAAAKGIASLVPDDAL  361 (398)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHTCSSCSS
T ss_pred             hHHHHHHHcCCcCCCHHHHHHHHHHHHhcCCcccC
Confidence            66321111       44444555666666554433

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.74  E-value=0.0001  Score=62.97  Aligned_cols=95  Identities=19%  Similarity=0.286  Sum_probs=60.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HH---h----c--C--ceecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EK---E----T--G--AKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~---~----~--g--~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      +||+|||.|.||..++..+...|. +|..+|.++...+. ..   .    .  .  +....+. +.+++||+|+++.+. 
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~-   80 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA-   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC-
Confidence            689999999999999999988886 89999987533221 01   0    0  1  2233566 678999999999853 


Q ss_pred             hhhhhc-----------chHH---HHhcCCCCCEEEEcCCCCccCH
Q 027577          104 EKTRGM-----------FDKD---RIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       104 ~~t~~~-----------i~~~---~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      +...+.           +-.+   .+....|++++++++  .++|.
T Consensus        81 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t--NPv~~  124 (309)
T 1ur5_A           81 PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDA  124 (309)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC--SSHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC--CchHH
Confidence            211110           1111   233345889999874  35544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.74  E-value=0.00011  Score=69.85  Aligned_cols=135  Identities=13%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh---------------c-------CceecCCHHhhcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------------T-------GAKFEEDLDTMLPKC   93 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~---------------~-------g~~~~~~l~ell~~a   93 (221)
                      =++|||||.|.||..+|..+...|++|+.+|+++...+....               .       .+....+++ .+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            369999999999999999999999999999987532211100               0       012333444 47899


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeE
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA  173 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~  173 (221)
                      |+|+=++|-+.+.+.-+-++.-+.++++++|-.-+.+  +....|.+.++ ..=+.+++--|.  |.+ .-||.+   |+
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn--P~~-~m~LVE---vi  465 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS--PAH-VMRLLE---VI  465 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS--STT-TCCEEE---EE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC--CCC-CCceEE---Ee
Confidence            9999999977777776666777778999998765544  55566766654 333445666553  322 223443   66


Q ss_pred             ECCCCCc
Q 027577          174 MTPHVSG  180 (221)
Q Consensus       174 ~tPH~a~  180 (221)
                      -+|+++-
T Consensus       466 ~g~~Ts~  472 (742)
T 3zwc_A          466 PSRYSSP  472 (742)
T ss_dssp             ECSSCCH
T ss_pred             cCCCCCH
Confidence            6666553

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.73  E-value=0.00031  Score=60.31  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHH-------HhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~-------~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++|| .+++.++++..+..+|++|.+..|....+  +..       +..|  +....+++++++++|+|....
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            48899999999 68999999999999999999998764222  111       1234  556689999999999998754


Q ss_pred             CCCh----------h--hhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTE----------K--TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~----------~--t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      =...          +  ...-++.+.++.+|++++|+.+.
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            2111          0  11246788888888888888764

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.73  E-value=3.4e-05  Score=62.66  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             CCEEEEEccCHHHHHHHHH--HccCCCeEE-EEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~--l~~~G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .++|+|||+|++|+.+++.  ....|+++. ++|.++..... ....++...+++++++++.|++++++|
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvP  154 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVP  154 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecC
Confidence            4679999999999999994  345678754 67876543321 222334456789999977799999999

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.69  E-value=3.1e-05  Score=67.13  Aligned_cols=66  Identities=23%  Similarity=0.234  Sum_probs=48.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--------CCeE-EEEcCCCCCh-hHHHhcCc-eecCCHHhhcC--CCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNL-LYHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--------G~~V-~~~d~~~~~~-~~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -+|||||+|.||+..++.++..        +.+| .++|+++... ..+++.|+ ..+.+++++++  +.|+|++++|.
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~   85 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG   85 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            4899999999999988877543        2354 4678765332 34455676 45679999995  48999999993

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.69  E-value=0.00038  Score=59.83  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---H----HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~----~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.||++||=|  ++.++++..+..+|++|.+..|... .. +.   +    ++.|  +....+++++++++|+|...
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            5889999999974  9999999999999999999988542 11 12   1    1445  45578999999999999884


Q ss_pred             CCC-------Chh-----hhhcchHHHHhcC-CCCCEEEEcC
Q 027577          100 TPL-------TEK-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (221)
Q Consensus       100 ~p~-------~~~-----t~~~i~~~~~~~m-k~ga~lIn~s  128 (221)
                      .=.       .++     ...-++.+.++.+ |++++|+.+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            321       011     1234678888888 8888888875

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.69  E-value=0.00012  Score=62.77  Aligned_cols=60  Identities=23%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             CCEEEEEccCHHHH-HHHHHHccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCC---CCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDvVv~~~p  101 (221)
                      -.+|||||+|.||+ ..++.++.. +++|. ++|++..      ..++..+.++++++++   .|+|++++|
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~------~~g~~~~~~~~~ll~~~~~vD~V~i~tp   90 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT------VEGVNSYTTIEAMLDAEPSIDAVSLCMP   90 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC------CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh------hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence            46899999999998 788888765 67754 5677643      2467777899999854   999999999

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.69  E-value=0.0002  Score=64.02  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEc--------CCCCChhH------------------HHhcCceecC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHD--------RVKMDPQL------------------EKETGAKFEE   84 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d--------~~~~~~~~------------------~~~~g~~~~~   84 (221)
                      +.+|.|+||.|-|+|++|..+|+.|...|.+|++.+        +.....+.                  ....+...++
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            346899999999999999999999999999987644        32222211                  1122444332


Q ss_pred             CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCCC--CEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~g--a~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       .++++ .+|||.+-|.-     .+.|+.+....++.+  .++++.+-+.+ ..++ .+.|.+..|.
T Consensus       310 -~~~i~~~~~DI~iPcAl-----~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          310 -GQQPWSVPVDIALPCAT-----QNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGVL  368 (450)
T ss_dssp             -TCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             -CcccccCCccEEeeccc-----cccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCCE
Confidence             23333 47999988764     466887777777643  46777776664 4444 3567776666

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.68  E-value=5.5e-05  Score=65.75  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=67.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec---CC---HHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|++|.|+|.|.||...++.++.+|++|++.++++...+.+. ++|...+   .+   +.++...+|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            689999999999999999999999999999998765555544 6675422   22   23344568999998873221  


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                         ....+..|+++..+|+++..
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCEEEEEccC
Confidence               24566778899999998753

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.67  E-value=3.8e-05  Score=68.13  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CCEEEEEccCH---HHHHHHHHHccCC-CeEE--EEcCCCCCh-hHHHhcCc---eecCCHHhhcCC-------CCEEEE
Q 027577           36 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDP-QLEKETGA---KFEEDLDTMLPK-------CDIVVV   98 (221)
Q Consensus        36 g~~vgIIG~G~---iG~~iA~~l~~~G-~~V~--~~d~~~~~~-~~~~~~g~---~~~~~l~ell~~-------aDvVv~   98 (221)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++... +.+++.|+   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999988887665 6765  568765332 34455677   467899999865       999999


Q ss_pred             eCCCC
Q 027577           99 NTPLT  103 (221)
Q Consensus        99 ~~p~~  103 (221)
                      ++|..
T Consensus       117 ~tp~~  121 (417)
T 3v5n_A          117 VTPNH  121 (417)
T ss_dssp             CSCTT
T ss_pred             CCCcH
Confidence            99943

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.67  E-value=2.3e-05  Score=69.01  Aligned_cols=67  Identities=21%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CCEEEEEccCH---HHHHHHHHHccCC-CeEE--EEcCCCCCh-hHHHhcCc---eecCCHHhhcCC-------CCEEEE
Q 027577           36 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDP-QLEKETGA---KFEEDLDTMLPK-------CDIVVV   98 (221)
Q Consensus        36 g~~vgIIG~G~---iG~~iA~~l~~~G-~~V~--~~d~~~~~~-~~~~~~g~---~~~~~l~ell~~-------aDvVv~   98 (221)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++... +.+++.|+   ..+.++++++++       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            46899999999   9999998887654 6765  468765333 34456777   567899999864       999999


Q ss_pred             eCCC
Q 027577           99 NTPL  102 (221)
Q Consensus        99 ~~p~  102 (221)
                      |+|.
T Consensus        92 ~tp~   95 (398)
T 3dty_A           92 ATPN   95 (398)
T ss_dssp             ESCG
T ss_pred             CCCc
Confidence            9994

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.66  E-value=0.00025  Score=60.30  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccC-CCeEEEEcCCCC--ChhHHHhcCc--eecCCHHhhcCCCCEEEEeCCCCh
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM--DPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~~~~~~g~--~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .+.|.||++||=   +++.++++..+..+ |++|.+..|...  +.+..++.|.  ....+++++++++|+|....=..+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            588999999996   69999999999999 999999988542  2222334453  345789999999999988654331


Q ss_pred             ------hh-----hhcchHHHHhcCCCCCEEEEcC
Q 027577          105 ------KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ------~t-----~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                            +.     ..-++.+.++.+|++++|+.+.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                  11     2346778888888888888763

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.65  E-value=0.0004  Score=59.28  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             CCC-CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC-Ch-hHH---H----hcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLE-GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-QLE---K----ETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~-g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~~---~----~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+. |.||++|| .+++.++++..+..+|++|.+..|... .. +..   +    ..|  +....+++++++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            578 99999999 678999999999999999999988642 22 221   1    333  44567999999999999876


Q ss_pred             C---CCCh-h--------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 T---PLTE-K--------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~---p~~~-~--------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .   -..+ +        ...-++.+.++.+|++++|+.+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            5   1110 0        12346788888888888888875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.65  E-value=0.00025  Score=60.97  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh----HHHh------cC--ceecCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ----LEKE------TG--AKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~----~~~~------~g--~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ..++|+|||.|.||.++|..+...|+ +|..+|+++...+    ....      ..  +....+ .+.+++||+|+++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            35799999999999999999987777 9999998764322    0111      11  222234 478899999999975


Q ss_pred             CC--hh---------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHH
Q 027577          102 LT--EK---------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQ  136 (221)
Q Consensus       102 ~~--~~---------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~  136 (221)
                      ..  +.         +..++..  +.+....|++++++++  .++|.-
T Consensus        83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  128 (321)
T 3p7m_A           83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIM  128 (321)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            22  11         1111110  1233345889999995  555543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.63  E-value=0.00015  Score=62.42  Aligned_cols=100  Identities=18%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh----cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~----~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      -.+++|+|||.|.||.++|..+...|.  ++..+|.+....+     ....    ..+....+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            457899999999999999999987776  8999998542211     1010    1222233446778999999998753


Q ss_pred             Chh-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 TEK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 ~~~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ...           +..++..  +.+....|++++++++  .++|.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi  130 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHH
Confidence            211           1111111  2344456899999996  45553

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.63  E-value=3.6e-05  Score=68.76  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CCEEEEEcc----CHHHHHHHHHHccC--CCeE-EEEcCCCCChh-HHHhcCce---ecCCHHhhcC--CCCEEEEeCC
Q 027577           36 GKTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~----G~iG~~iA~~l~~~--G~~V-~~~d~~~~~~~-~~~~~g~~---~~~~l~ell~--~aDvVv~~~p  101 (221)
                      -.+|||||+    |.||+.+++.++..  +++| .++|+++...+ .++..|+.   .+.+++++++  +.|+|++|+|
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp   98 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ   98 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence            358999999    99999999999876  6775 56787653332 34445654   6689999985  6999999999

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.62  E-value=0.00021  Score=61.19  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhc--------CceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .+||+|||.|.+|.+++..+...|.  +|.++|.+....+ ...++        .+....+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999988887  8999998753322 11111        11111223567899999999987422


Q ss_pred             hhhhc------------ch--HHHHhcCCCCCEEEEcCCCCccCHHH--HHHH--HHhCCceEE
Q 027577          105 KTRGM------------FD--KDRIAKMKKGVLIVNNARGAIMDTQA--VVDA--CSSGHIAGY  150 (221)
Q Consensus       105 ~t~~~------------i~--~~~~~~mk~ga~lIn~srg~~vd~~a--l~~a--l~~g~i~~a  150 (221)
                       ..+.            +.  .+.+....|+++++++  ..++|.-.  +.+.  +...++.|.
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence             1111            10  0122333689999996  44555433  2232  233466655

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.62  E-value=0.00012  Score=61.93  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             CEEEEEccCHHHHHHHHHHcc----CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP----FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~----~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~  109 (221)
                      .+|||||+|.||+..++.+..    -++++. ++|++..    ++..++. ..+++++++  +.|+|++++|..  .+. 
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~--~H~-   79 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----GSLDEVR-QISLEDALRSQEIDVAYICSESS--SHE-   79 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----CEETTEE-BCCHHHHHHCSSEEEEEECSCGG--GHH-
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcH--hHH-
Confidence            489999999999999998865    356655 5676432    2234555 368999986  689999999932  222 


Q ss_pred             chHHHHhcCCCCC-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga-~lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                        +.....++.|. +++.- ..-.+-+.++|.++.++.++.
T Consensus        80 --~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           80 --DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             --HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence              22334455565 44442 112233446677777665554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.61  E-value=8.6e-05  Score=64.67  Aligned_cols=91  Identities=16%  Similarity=0.230  Sum_probs=68.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---CC---HHhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+   .+   .+++...+|+|+-++....    
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~----  269 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH----  269 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence            4889999999999999999999999999999987766777777776432   12   2233356899998886321    


Q ss_pred             cchHHHHhcCCCCCEEEEcCCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       .-...++.++++..++.++..
T Consensus       270 -~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          270 -NLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             -CHHHHHTTEEEEEEEEECCCC
T ss_pred             -HHHHHHHHhccCCEEEEeccC
Confidence             224567888999999988753

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.60  E-value=0.00043  Score=59.84  Aligned_cols=95  Identities=12%  Similarity=0.092  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCC-hh-H-------HHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~-~-------~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++|| .+++.++++..+..+|++|.+..|.... .+ .       ++..|  +....+++ +++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            58899999999 6899999999999999999999886422 21 1       12335  44567899 999999998633


Q ss_pred             --C--CCh----h----h--hhcchHHHHhcCCCCCEEEEcC
Q 027577          101 --P--LTE----K----T--RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 --p--~~~----~----t--~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                        +  ..+    +    .  ..-++.+.++.+|++++|+.+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              1  001    1    1  1335666777777777777654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.59  E-value=0.00019  Score=61.51  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH-----HHh-----cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-----EKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-----~~~-----~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ..+||+|||.|.+|.+++..+...|.  +|..+|.++...+.     ...     ..+....+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            35799999999999999999876664  89999986421111     110     1112222446779999999999864


Q ss_pred             Chhh-----------hhcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 TEKT-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 ~~~t-----------~~~i~--~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ....           ..++.  .+.+....|++++++++  .++|.
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  128 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDI  128 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHH
Confidence            3211           01111  01233347899999975  55554

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.59  E-value=9.6e-05  Score=63.26  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CEEEEEccCHHHHHHHHHHcc--CCCeE-EEEcCCCCC--hhHHHhcCcee-cCCHHhhcC-----CCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP--FNCNL-LYHDRVKMD--PQLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~--~G~~V-~~~d~~~~~--~~~~~~~g~~~-~~~l~ell~-----~aDvVv~~~p~~~~  105 (221)
                      .+|||||+|.||+.+++.+..  -+.++ .++|+++..  .+.++..|+.. ..+.+++++     +.|+|+.++|  ..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp--~~   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS--AS   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC--HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC--hH
Confidence            589999999999999999844  45664 567877655  34455667652 356677754     5899999999  22


Q ss_pred             hhhcchHHHHhcCCCCCEEEE
Q 027577          106 TRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      ...-+....++ .++|..+++
T Consensus        83 ~h~~~a~~al~-a~~Gk~Vi~  102 (312)
T 1nvm_B           83 AHVQNEALLRQ-AKPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHH-HCTTCEEEE
T ss_pred             HHHHHHHHHHH-hCCCCEEEE
Confidence            22222222222 123777777

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.59  E-value=0.00012  Score=63.05  Aligned_cols=67  Identities=28%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcCc------------------eecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA------------------KFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~------------------~~~~~l~ell~~aDv   95 (221)
                      .+|||+|+|.||+.+++.+... ++++. +.|+++.... .++..|+                  ....++++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3899999999999999999765 46754 4566433222 2222222                  233578888889999


Q ss_pred             EEEeCCCC
Q 027577           96 VVVNTPLT  103 (221)
Q Consensus        96 Vv~~~p~~  103 (221)
                      |+.|+|..
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999943

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.59  E-value=7.3e-05  Score=64.96  Aligned_cols=66  Identities=12%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             CCEEEEEccCHHHH-HHHHHHccCCCeEE-EEcCCCCCh-hHHHhcC-ceecCCHHhhcCC--CCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNLL-YHDRVKMDP-QLEKETG-AKFEEDLDTMLPK--CDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~-~iA~~l~~~G~~V~-~~d~~~~~~-~~~~~~g-~~~~~~l~ell~~--aDvVv~~~p  101 (221)
                      -.+|||||+|.+|. .++..+..-++++. ++|+++... +.++..+ ...+.++++++++  .|+|++++|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp   97 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV   97 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            45899999999995 56777777788854 678765333 2344555 4567899999975  899999999

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.59  E-value=0.00033  Score=60.49  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---HH----hcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~~----~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||=|  +++++++..+..+|++|.+..|... .. +.   ++    +.|  +....+++++++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            5889999999975  9999999999999999999988642 11 12   11    445  45578999999999999884


Q ss_pred             CCC--------Chh-----hhhcchHHHHhcC-CCCCEEEEcCC
Q 027577          100 TPL--------TEK-----TRGMFDKDRIAKM-KKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~--------~~~-----t~~~i~~~~~~~m-k~ga~lIn~sr  129 (221)
                      .=.        .++     ...-++.+.++.. +++++|+.+.-
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            321        011     1234688888888 88999988743

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.57  E-value=9.4e-05  Score=64.03  Aligned_cols=92  Identities=24%  Similarity=0.174  Sum_probs=68.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC------CHHhhc-CCCCEEEEeCCCC-hhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE------DLDTML-PKCDIVVVNTPLT-EKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~------~l~ell-~~aDvVv~~~p~~-~~t  106 (221)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++...+.++++|...+-      ++.+.+ ...|+|+-+++.+ +. 
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~-  257 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  257 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHH-
Confidence            48999999999999999999999999999999887777777778764321      232223 4689999998742 11 


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                         .-...++.++++..++.++..
T Consensus       258 ---~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          258 ---DFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             ---CTTTGGGGEEEEEEEEECCCC
T ss_pred             ---HHHHHHHHhcCCCEEEEecCC
Confidence               123456778888899888653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.57  E-value=7.8e-05  Score=64.70  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC---CChhHHHhcCceecC--CHHhhc----CCCCEEEEeCCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKETGAKFEE--DLDTML----PKCDIVVVNTPLT  103 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~---~~~~~~~~~g~~~~~--~l~ell----~~aDvVv~~~p~~  103 (221)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   ...+.++++|+..++  ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999999876   455666667765441  111111    3589999988732


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ...    ....+..|+++..+|+++-
T Consensus       258 ~~~----~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI----LGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH----HHHHGGGEEEEEEEEECSC
T ss_pred             HHH----HHHHHHHHhcCCEEEEEec
Confidence            221    0456778889889998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.57  E-value=0.00024  Score=61.69  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVv~~~p  101 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987777777777776432       12333222     4899998886


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      ..+     .-...+..++++ ..++.++-
T Consensus       272 ~~~-----~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVG-----VMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHH-----HHHHHHHTBCTTTCEEEECSC
T ss_pred             CHH-----HHHHHHHHhhcCCcEEEEEcC
Confidence            311     124567888998 88888864

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.56  E-value=0.0003  Score=60.04  Aligned_cols=108  Identities=16%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CCCCCEEEEE-cc-CHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhh
Q 027577           33 DLEGKTVGTV-GC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (221)
Q Consensus        33 ~l~g~~vgII-G~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~  107 (221)
                      -+..++++|| |+ |++|+.+++.++..|++++ .+++.....+   ..|+..+.+++++.+  ..|++++++|. +...
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~   85 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAA   85 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCH-HHHH
Confidence            4667889999 98 9999999999999999943 5565421111   357777788999988  89999999992 2223


Q ss_pred             hcchHHHHhcCCCC-CEEEEcCCCCc-cCHHHHHHHHHhC-Cce
Q 027577          108 GMFDKDRIAKMKKG-VLIVNNARGAI-MDTQAVVDACSSG-HIA  148 (221)
Q Consensus       108 ~~i~~~~~~~mk~g-a~lIn~srg~~-vd~~al~~al~~g-~i~  148 (221)
                      ..+. +..+   .| ..+|+.+-|-. -++..+.+..++. .+.
T Consensus        86 ~~~~-e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           86 AAIN-EAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HHHH-HHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HHHH-HHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            3332 2332   22 35567777643 2344788888877 666

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.56  E-value=0.00025  Score=61.52  Aligned_cols=90  Identities=16%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+       .++.+.+     ...|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 79999987777777788886432       1233222     15899998886


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      . +.    .-...++.++++ ..++.++-
T Consensus       271 ~-~~----~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 R-IE----TMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEEEECCC
T ss_pred             C-HH----HHHHHHHHHhcCCCEEEEEcc
Confidence            2 22    124567888998 88888764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.56  E-value=0.00023  Score=61.77  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVv~~~p  101 (221)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            58899999999999999999999999 79999987766777777776432       12333221     4899998886


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      . +.    .-...++.++++ ..++.++-
T Consensus       271 ~-~~----~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          271 R-LD----TMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             C-HH----HHHHHHHHBCTTTCEEEECSC
T ss_pred             C-HH----HHHHHHHHhhcCCcEEEEecc
Confidence            2 11    124566778888 88888763

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.55  E-value=0.00022  Score=62.10  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             CEEEEEc-cCHHHHH-HH----HHHccCC-CeE----------EEEcCCCCCh-hHHHhcCce-ecCCHHhhcCC--CCE
Q 027577           37 KTVGTVG-CGRIGKL-LL----QRLKPFN-CNL----------LYHDRVKMDP-QLEKETGAK-FEEDLDTMLPK--CDI   95 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~-iA----~~l~~~G-~~V----------~~~d~~~~~~-~~~~~~g~~-~~~~l~ell~~--aDv   95 (221)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++|+++... +.++..++. .+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4899999 9999998 66    6665443 222          4888876433 344566774 56899999965  899


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                      |++++|....     -+-....|+.|..++
T Consensus        87 V~i~tp~~~h-----~~~~~~al~~Gk~V~  111 (383)
T 3oqb_A           87 FFDAATTQAR-----PGLLTQAINAGKHVY  111 (383)
T ss_dssp             EEECSCSSSS-----HHHHHHHHTTTCEEE
T ss_pred             EEECCCchHH-----HHHHHHHHHCCCeEE
Confidence            9999994322     122334455555555

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.54  E-value=0.00035  Score=60.73  Aligned_cols=90  Identities=14%  Similarity=0.034  Sum_probs=67.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+       .++.+.+     ...|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            58899999999999999999999999 79999987777777777876432       1232222     25899998886


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      . +.    .-...++.++++ ..++.++-
T Consensus       275 ~-~~----~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 T-AQ----TLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEEEECCC
T ss_pred             C-HH----HHHHHHHHhhcCCCEEEEECC
Confidence            2 11    124567788998 88888764

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=97.54  E-value=0.00052  Score=58.64  Aligned_cols=96  Identities=19%  Similarity=0.308  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccC-CCeEEEEcCCCC-Chh----HHHhcCc--eecCCHHhhcCCCCEEEEeCC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-DPQ----LEKETGA--KFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~-~~~----~~~~~g~--~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .+.|.||++||=   |++.++++..+..+ |++|.+..|... ..+    .+++.|.  ....+++++++++|+|....=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            588999999996   69999999999999 999999987542 221    2223353  456799999999999987643


Q ss_pred             CCh-----hh-----hhcchHHHHhcCCCCCEEEEcC
Q 027577          102 LTE-----KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~-----~t-----~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ..+     +.     ..-++.+.++..|++++|+.+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            111     10     1335667777777777777653

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.54  E-value=8.7e-05  Score=63.70  Aligned_cols=64  Identities=25%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEE-EEcCCC-CChhHHH----hcC--ceecCCHHhhcC--CCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK-MDPQLEK----ETG--AKFEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~-~~~~~~~----~~g--~~~~~~l~ell~--~aDvVv~~~p  101 (221)
                      .+|||||+|.+|...++.+ .-+++|. ++|+++ ...+.+.    +.+  ...+.+++++++  +.|+|++++|
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp   76 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV   76 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            4899999999999888777 5677765 578765 3333222    234  366789999996  4999999998

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.53  E-value=8.1e-05  Score=64.23  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHhc------CceecCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKET------GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ..++|+|||.|.||..+|..+...|+  +|..+|.+....+     ..+..      .+....++++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            57899999999999999999987787  8999998642211     11110      1223346665 899999999864


Q ss_pred             CCh-----------hhhhcchH--HHHhcCCCCCEEEEcC
Q 027577          102 LTE-----------KTRGMFDK--DRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~-----------~t~~~i~~--~~~~~mk~ga~lIn~s  128 (221)
                      ...           .+..++..  +.+....|++++++++
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt  138 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP  138 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence            221           11111110  1233447899999987

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.53  E-value=0.00016  Score=62.60  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=43.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEE-EcCCCCCh-hHHHhcCceec-----------------CCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDP-QLEKETGAKFE-----------------EDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~-~d~~~~~~-~~~~~~g~~~~-----------------~~l~ell~~aDvV   96 (221)
                      .+|||+|+|.||+.+++.+... ++++.+ .|++.... ..+...++...                 .+++++++++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998764 567654 45543211 12222233222                 2344555679999


Q ss_pred             EEeCCCC
Q 027577           97 VVNTPLT  103 (221)
Q Consensus        97 v~~~p~~  103 (221)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999843

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.53  E-value=7.8e-05  Score=67.45  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             CCEEEEEccCHH--HHHHHHHHcc---C-CCeEEEEcCCCCChhHH----H----hc----CceecCCHHhhcCCCCEEE
Q 027577           36 GKTVGTVGCGRI--GKLLLQRLKP---F-NCNLLYHDRVKMDPQLE----K----ET----GAKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        36 g~~vgIIG~G~i--G~~iA~~l~~---~-G~~V~~~d~~~~~~~~~----~----~~----g~~~~~~l~ell~~aDvVv   97 (221)
                      .+||+|||.|.|  |.++|..+..   + |.+|..||+++...+..    .    ..    .+....++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            479999999997  5666666642   3 78999999975322111    1    11    1334468888899999999


Q ss_pred             EeCCC
Q 027577           98 VNTPL  102 (221)
Q Consensus        98 ~~~p~  102 (221)
                      +++|.
T Consensus        83 iaagv   87 (480)
T 1obb_A           83 NTAMV   87 (480)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99973

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.53  E-value=0.00085  Score=58.30  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC--ChhHH---Hh--------cCceecCCHHhhcCCCCEEEE
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE---KE--------TGAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~---~~--------~g~~~~~~l~ell~~aDvVv~   98 (221)
                      .|.|.||++|| .-++.++++..+..+|++|.+..|...  +.+..   ++        .++....+++++++++|+|..
T Consensus       185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt  264 (353)
T 3sds_A          185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT  264 (353)
T ss_dssp             SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe
Confidence            47999999999 457999999999999999999988643  22221   11        134566899999999999987


Q ss_pred             eC--CCChh----------hhhcchHHHHhc--CCCCCEEEEcC
Q 027577           99 NT--PLTEK----------TRGMFDKDRIAK--MKKGVLIVNNA  128 (221)
Q Consensus        99 ~~--p~~~~----------t~~~i~~~~~~~--mk~ga~lIn~s  128 (221)
                      -+  +...+          ...-++.+.++.  ++++++|+.+.
T Consensus       265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            43  11111          012356677776  67777777653

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.52  E-value=0.00062  Score=59.38  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCCCh----hH-------HHhcC--ceecCCHHhhcCCCCEEE
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP----QL-------EKETG--AKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~-------~~~~g--~~~~~~l~ell~~aDvVv   97 (221)
                      .+.|+||++||=+  +++++++..+..+|++|.+..|....+    +.       +++.|  +....+++++++++|+|.
T Consensus       177 ~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVy  256 (365)
T 4amu_A          177 NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIY  256 (365)
T ss_dssp             SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEE
Confidence            4899999999976  899999999999999999998754222    21       22334  455689999999999998


Q ss_pred             EeC----CCChh---------hhhcchHHHHhcCCCCCEEEEcC
Q 027577           98 VNT----PLTEK---------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        98 ~~~----p~~~~---------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .-+    ....+         ...-++.+.++..+++++|+-+.
T Consensus       257 td~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          257 TDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             ECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             ecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            742    11111         01336788888888888888875

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.51  E-value=0.00026  Score=60.44  Aligned_cols=95  Identities=19%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCC-Chh-H---HHhcCc--eecCCHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ-L---EKETGA--KFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~-~---~~~~g~--~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+.|.||++||=   |++.++++..+..+|++|.+..|... ..+ .   +++.|.  ....+++++++++|+|....=.
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            588999999996   59999999999999999999987542 222 1   223343  3457899999999999885532


Q ss_pred             C------hhh-----hhcchHHHHhcCCCCCEEEEc
Q 027577          103 T------EKT-----RGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       103 ~------~~t-----~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .      ++.     ..-++.+.++..|++++|+.+
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~  267 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHP  267 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECC
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECC
Confidence            1      111     123466667777777777765

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.50  E-value=0.00057  Score=59.38  Aligned_cols=95  Identities=12%  Similarity=0.086  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCC-hh-H-------HHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~-~-------~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++|| .+++.++++..+..+|++|.+..|.... .+ .       ++..|  +....+++ +++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            58899999999 6899999999999999999999886422 21 1       12334  44567899 999999998633


Q ss_pred             ----CCC----hh----h--hhcchHHHHhcCCCCCEEEEcC
Q 027577          101 ----PLT----EK----T--RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 ----p~~----~~----t--~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                          ...    ++    .  ..-++.+.++.+|++++|+.+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                100    11    1  1335777777778888888764

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.49  E-value=0.00031  Score=60.58  Aligned_cols=97  Identities=11%  Similarity=0.117  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---H----HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~----~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||=|  +++++++..+..+|++|.+..|... .. +.   +    ++.|  +....+++++++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            5889999999975  9999999999999999999988542 21 12   1    1445  45578999999999999884


Q ss_pred             CCC-----C---hh-----hhhcchHHHHhcC-CCCCEEEEcCC
Q 027577          100 TPL-----T---EK-----TRGMFDKDRIAKM-KKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~-----~---~~-----t~~~i~~~~~~~m-k~ga~lIn~sr  129 (221)
                      .=.     .   ++     ...-++.+.++.+ +++++|+.+.-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            321     0   11     1234688888888 88999988753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.49  E-value=0.00024  Score=61.88  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=67.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988877788888886532       12222221     4899998887


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      . +.    .-...+..++++ ..++.++-
T Consensus       273 ~-~~----~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          273 N-VS----VMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             C-HH----HHHHHHHTBCTTTCEEEECSC
T ss_pred             C-HH----HHHHHHHHhhccCCEEEEEcc
Confidence            2 21    224567788886 88887763

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.49  E-value=0.00034  Score=60.67  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvVv~~~p  101 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987767777777776432       12333222     4899998886


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~sr  129 (221)
                      .. .    .-...++.++++ ..++.++-
T Consensus       270 ~~-~----~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NV-K----VMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CH-H----HHHHHHHTBCTTTCEEEECSC
T ss_pred             cH-H----HHHHHHHhhccCCcEEEEEec
Confidence            21 1    124567888998 88888764

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.49  E-value=0.00082  Score=57.68  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC--ChhHHH-------hcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQLEK-------ETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~-------~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.+|++||= .++.++++..+..+|++|.+..|...  +.+...       +.|  +....+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            588999999995 56999999999999999999998653  222211       233  556789999999999999843


Q ss_pred             ----CCChh--------hhhcchHHHHhcCCCCCEEEEc
Q 027577          101 ----PLTEK--------TRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       101 ----p~~~~--------t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                          ....+        ...-++.+.++.+|++++|+.+
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~  270 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC  270 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECC
Confidence                11111        0133577777888888888775

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.48  E-value=0.00011  Score=59.52  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             CCEEEEEccCHHHHHHHHH--HccCCCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC-CCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~--l~~~G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~-~aDvVv~~~p  101 (221)
                      .++|+|||+|.+|+.+++.  ... |+++. ++|.++.... ......+...++++++++ +.|+|++|+|
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~P  149 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP  149 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCC
Confidence            3689999999999999996  334 78754 5676654322 122223444678899886 5999999999

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=97.48  E-value=9.9e-05  Score=66.69  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             CCEEEEEccCHH-HHHHHHHHccC-----CCeEEEEcCCCCChhH----HH----hc----CceecCCHHhhcCCCCEEE
Q 027577           36 GKTVGTVGCGRI-GKLLLQRLKPF-----NCNLLYHDRVKMDPQL----EK----ET----GAKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        36 g~~vgIIG~G~i-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~----~~----~~----g~~~~~~l~ell~~aDvVv   97 (221)
                      .+||+|||.|.+ |.++|..|...     +.+|..||+.+...+.    ..    ..    .+....++++.++.||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66677666444     5679999996532211    01    11    1333468888999999999


Q ss_pred             EeCCC
Q 027577           98 VNTPL  102 (221)
Q Consensus        98 ~~~p~  102 (221)
                      +++|.
T Consensus       108 iaag~  112 (472)
T 1u8x_X          108 AHIRV  112 (472)
T ss_dssp             ECCCT
T ss_pred             EcCCC
Confidence            99985

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.48  E-value=0.0004  Score=59.75  Aligned_cols=91  Identities=18%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---C---C-HHhh---c-----CCCCEEEEe
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---D-LDTM---L-----PKCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~---~-l~el---l-----~~aDvVv~~   99 (221)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++...+.++++|+..+   .   + .+++   .     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            4889999999999999999999999999999987655666777776321   1   1 1222   2     358999998


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +... .    .-...+..++++..++.++..
T Consensus       248 ~g~~-~----~~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNE-K----CITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCH-H----HHHHHHHHSCTTCEEEECSCC
T ss_pred             CCCH-H----HHHHHHHHHhcCCEEEEEecC
Confidence            8632 1    124567788999999998753

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.48  E-value=0.00031  Score=59.83  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCCh-----
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE-----  104 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~-----  104 (221)
                      .+.|.||++||=   +++.++++..+..+|++|.+..|....++. ...|  ...+++++++++|+|....-..+     
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~-~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~  220 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE-NTFG--TYVSMDEAVESSDVVMLLRIQNERHQSA  220 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-CSSC--EECCHHHHHHHCSEEEECCCCTTTCCSS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch-hhcC--ccCCHHHHhCCCCEEEeccchhhccccc
Confidence            588999999995   579999999999999999999875422221 2233  34589999999999988532111     


Q ss_pred             ----h--hhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 ----K--TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ----~--t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                          +  ...-++.+.++.++++++|+.+.
T Consensus       221 ~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          221 VSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             CCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             hhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence                1  12346888888899999988764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.46  E-value=0.00036  Score=55.65  Aligned_cols=91  Identities=11%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHc-cCCCeEEEEcCCCC-ChhHH--HhcCcee-------cCCHHhhcCCCCEEEEeCCCCh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLK-PFNCNLLYHDRVKM-DPQLE--KETGAKF-------EEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~-~~G~~V~~~d~~~~-~~~~~--~~~g~~~-------~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      |+|.|.| .|.||+.+++.|. ..|++|++.+|++. ..+..  ...++..       .++++++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5799999 6999999999999 89999999998643 22221  1112221       1345677899999999887421


Q ss_pred             hhhhcchHHHHhcCCC--CCEEEEcCCCC
Q 027577          105 KTRGMFDKDRIAKMKK--GVLIVNNARGA  131 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~--ga~lIn~srg~  131 (221)
                       ..   ....+..|++  ...||++|...
T Consensus        86 -~~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 -SD---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             -HH---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             -hh---HHHHHHHHHhcCCCeEEEEeece
Confidence             11   3344444432  24678777544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.46  E-value=0.00034  Score=51.69  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             CEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|||.    +..|..+.+.|+..|++|+.+++....     -.|...+.++.++-. .|++++++| .+.+..++.+
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e   77 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE-----VLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNY   77 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE-----ETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHH
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc-----CCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHH
Confidence            68999996    579999999999999999999985421     246666778888777 999999999 3344444433


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       ..+ +...+++++.  |-  .++++.+.+++..+.
T Consensus        78 -~~~-~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           78 -ILS-LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             -HHH-HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             -HHh-cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence             322 3444666654  32  356777777777777

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.45  E-value=0.00035  Score=59.86  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHh--------cCceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKE--------TGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~--------~g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .+||+|||.|.+|.+++..+...+.  ++..+|......+. +.+        ..+....+..+.+++||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999876665  89999985422211 111        112222244677999999999986432


Q ss_pred             hh-----------hhcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577          105 KT-----------RGMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       105 ~t-----------~~~i~--~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ..           ..++.  .+.+....|+++++++  ..++|.
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  126 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDI  126 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHH
Confidence            11           01111  0223334789999997  445554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.45  E-value=0.0003  Score=60.53  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .+||+|||.|.+|.+++..+...+.  ++..+|......+. +.++        .+....+..+.+++||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4799999999999999999876665  79999985422211 1111        12222244677999999999986432


Q ss_pred             hh-----------hhcchH--HHHhcCCCCCEEEEcCCCCccCH
Q 027577          105 KT-----------RGMFDK--DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       105 ~t-----------~~~i~~--~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ..           ..++..  +.+....|+++++++  ..++|.
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  130 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDI  130 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHH
Confidence            11           011110  122333689999997  445554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.43  E-value=0.00023  Score=57.63  Aligned_cols=97  Identities=19%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeCCCCh
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ...|+|.|.| .|.||+.+++.|...| ++|++++|++.........++.       ..++++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3457899999 6999999999999999 8999999865322111111221       11345677899999998876432


Q ss_pred             hhhhcchHHHHhcCCC--CCEEEEcCCCCc
Q 027577          105 KTRGMFDKDRIAKMKK--GVLIVNNARGAI  132 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~--ga~lIn~srg~~  132 (221)
                      ..  ......+..|++  ...||++|....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112233444432  247888887443

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.43  E-value=0.00026  Score=63.43  Aligned_cols=108  Identities=15%  Similarity=0.248  Sum_probs=67.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeE-EEEcCCCCChhHH-Hhc-C----------------------ceecCCHHhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLE-KET-G----------------------AKFEEDLDTML   90 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~-~~~-g----------------------~~~~~~l~ell   90 (221)
                      .+|||||+|.||+.+++.+... +++| .++|++....+.+ .+. |                      +..++++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999988654 6674 4567765333222 222 3                      34567999999


Q ss_pred             C--CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 027577           91 P--KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (221)
Q Consensus        91 ~--~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~-~vd~~al~~al~~g~i~  148 (221)
                      +  +.|+|++++|. +....   +-.+..|+.|..++.....- ...-+.|.++.++.++.
T Consensus       104 ~d~dIDaVviaTp~-p~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGI-PEVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCC-HHHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCC-hHHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  58999999983 22211   22344566777777533211 11234566666665555

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.43  E-value=0.0014  Score=58.09  Aligned_cols=113  Identities=20%  Similarity=0.267  Sum_probs=73.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHcc-CCCeEE-EEcCC-------CCChhHHH----hcC-------ceecCCHHhhc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRV-------KMDPQLEK----ETG-------AKFEEDLDTML   90 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~-~G~~V~-~~d~~-------~~~~~~~~----~~g-------~~~~~~l~ell   90 (221)
                      +.++.|++|.|.|+|++|+..|+.|.. .|.+|+ +.|.+       ....+...    ..+       .+.. +.++++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil  282 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  282 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-Cchhhh
Confidence            346899999999999999999999998 999987 34432       11222111    111       2233 455665


Q ss_pred             -CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577           91 -PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus        91 -~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                       .+||+++-|..     .+.++.+....++ -.+|+-.+.+.+ ..++- +.|.+..+. .+=|
T Consensus       283 ~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a~-~~l~~~Gi~-~~PD  337 (415)
T 2tmg_A          283 ELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEAD-EILSRRGIL-VVPD  337 (415)
T ss_dssp             TCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHHH-HHHHHTTCE-EECH
T ss_pred             cCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHHH-HHHHHCCCE-EECh
Confidence             47999999886     3456677777773 456666666665 44443 556666665 3444

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.42  E-value=0.0001  Score=63.49  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p~  102 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+     .++.+.+      ...|+|+-++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 89999987655566666675422     1222222      247888888762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+     .-...+..++++..++.++.
T Consensus       247 ~~-----~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PK-----ALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HH-----HHHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEcc
Confidence            11     12345667788888887754

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.42  E-value=0.00043  Score=58.62  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+.|.||++||=   +++.++++..+..+|++|.+..|....++...+.|+....+++++++++|+|.. +-.
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            488999999995   899999999999999999999875422222335577777899999999999998 653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.42  E-value=0.00016  Score=60.92  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=64.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC------CHHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~------~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|++|.|+|. |.+|...++.++..|++|++.++++...+.++++|...+-      ++.+.+..+|+|+- +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4889999998 9999999999999999999999876666666777754321      12233367899888 753 1   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .-...++.|+++..++.++.
T Consensus       200 --~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC--
T ss_pred             --HHHHHHHhhccCCEEEEEeC
Confidence              23456778888888888753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.42  E-value=0.00034  Score=61.54  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CCCCEEEEeCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVv~~~p  101 (221)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+     .++.+    +.  ...|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            358999999999999999999999999 89999987766677778886532     12222    22  25999999987


Q ss_pred             CChhhhhcchHHHHhcC----CCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKM----KKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~m----k~ga~lIn~sr  129 (221)
                      ....+.    ...+..+    +++..++.++-
T Consensus       292 ~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            332221    2233344    89999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.41  E-value=0.0006  Score=61.13  Aligned_cols=102  Identities=21%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             cCCCCCEEEEEccC----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-CceecCCHHhhcCCCCEEEEeC
Q 027577           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        32 ~~l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      ..+.|+||+|+|+.          +-...+++.|...|.+|.+|||... .+....+ ++..+.++++.++.+|+|++++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV-EQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH-HHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC-HhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            46899999999987          5688999999999999999998542 2222222 5666778899999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      .-.+ .+.+--....+.|+ ..+|+|+ |+ +.+.+.+
T Consensus       397 ~~~~-f~~~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EWDA-FRALDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CCTT-TTSCCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CCHH-hhcCCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            7432 23222233445565 4678885 54 4555444

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.41  E-value=0.00024  Score=61.31  Aligned_cols=91  Identities=22%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-C-C---HHh----hc----CCCCEEEEeC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E-D---LDT----ML----PKCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~e----ll----~~aDvVv~~~  100 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+ + +   .++    +.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            48899999999999999999999999 89999987655667777776421 1 1   111    11    3589999988


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .. +.    .-...++.++++..++.++-.
T Consensus       251 g~-~~----~~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GA-EA----SIQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CC-HH----HHHHHHHHSCTTCEEEECSCC
T ss_pred             CC-hH----HHHHHHHHhcCCCEEEEEecC
Confidence            72 21    124567789999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.41  E-value=0.00017  Score=61.82  Aligned_cols=91  Identities=22%  Similarity=0.230  Sum_probs=66.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc----CCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell----~~aDvVv~~~p~~~~  105 (221)
                      .|++|.|+|.|.+|..+++.++.+|++|++.++++...+.++++|...+     .++.+.+    ...|+|+.++...+ 
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~-  242 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP-  242 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence            4889999999999999999999999999999987655566666775422     1222222    46899998886322 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                          .....+..|+++..++.++..
T Consensus       243 ----~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          243 ----AFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             ----HHHHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHHhhcCCEEEEeccc
Confidence                124566778888899988754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.41  E-value=0.00043  Score=59.30  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC--CCh-----hHHHh-----c--CceecCCHHhhcCCCCEEEE
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDP-----QLEKE-----T--GAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~--~~~-----~~~~~-----~--g~~~~~~l~ell~~aDvVv~   98 (221)
                      ...++|+|||.|.||..+|..+...|+ +|..+|+++  ...     +....     .  .+....+ .+.+++||+|++
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIi   84 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVI   84 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEE
Confidence            346899999999999999999998898 999999863  111     11111     1  1222234 467899999999


Q ss_pred             eCCC--Chh---------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHH
Q 027577           99 NTPL--TEK---------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus        99 ~~p~--~~~---------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~a  137 (221)
                      +...  .|.         +..++..  +.+....|++++++++  .++|.-.
T Consensus        85 aag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t  134 (315)
T 3tl2_A           85 TAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMT  134 (315)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHH
Confidence            9742  111         1111111  1233346899999997  4444433

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.40  E-value=0.00039  Score=59.87  Aligned_cols=111  Identities=10%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---------CCeEE-EEcCCCCCh-----h-HHH-hc-CceecC--CHHhhcC--CCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDP-----Q-LEK-ET-GAKFEE--DLDTMLP--KCD   94 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---------G~~V~-~~d~~~~~~-----~-~~~-~~-g~~~~~--~l~ell~--~aD   94 (221)
                      .+|||||+|.||+.+++.+...         +.+|. ++|++....     . ... .. ....+.  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            3899999999999999998754         66655 456653211     1 111 11 112233  8899884  699


Q ss_pred             EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      +|+.|+|....... .-+-....|+.|..+|....+.+. .-+.|.+..++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999994432111 223346678899999988666553 456777777777665

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.40  E-value=0.00031  Score=56.88  Aligned_cols=67  Identities=19%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             CCEEEEEccCHHHHHHHHHH--ccCCCeEE-EEcCCCC-ChhH--HHhcCceecCCHHhhcCC--CCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKM-DPQL--EKETGAKFEEDLDTMLPK--CDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l--~~~G~~V~-~~d~~~~-~~~~--~~~~g~~~~~~l~ell~~--aDvVv~~~p~  102 (221)
                      .++++|+|+|++|+.+++.+  ...|+++. ++|.++. ....  .....+...+++++++++  .|++++|+|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            46899999999999999984  45678855 5677654 3221  122223345688888874  9999999993

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.40  E-value=0.0009  Score=52.83  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CCH----HhhcCCCCEEEEeCCCChhhhhc-
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDL----DTMLPKCDIVVVNTPLTEKTRGM-  109 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l----~ell~~aDvVv~~~p~~~~t~~~-  109 (221)
                      |+|.|.| .|.||+.+++.|.+.|++|++.+|++...+... .++..+ .|+    .+.+..+|+|+.+.......... 
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence            5799999 599999999999999999999999753222211 233211 111    16778999999988654322111 


Q ss_pred             --chHHHHhcCCC--CCEEEEcCCC
Q 027577          110 --FDKDRIAKMKK--GVLIVNNARG  130 (221)
Q Consensus       110 --i~~~~~~~mk~--ga~lIn~srg  130 (221)
                        .....++.+++  ...+|.+|..
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecc
Confidence              12334555544  3567777653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.39  E-value=0.00081  Score=53.37  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CCH----HhhcCCCCEEEEeCCCC--h---h
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDL----DTMLPKCDIVVVNTPLT--E---K  105 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l----~ell~~aDvVv~~~p~~--~---~  105 (221)
                      |+|.|.|. |.||+.+++.|.+.|++|++.+|++.........++..+ .|+    .+.+..+|+|+.+....  +   .
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            57999996 999999999999999999999986532222211233221 122    16778999999887642  1   1


Q ss_pred             hhhcchHHHHhcCCC-CCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKK-GVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~-ga~lIn~sr  129 (221)
                      ..-......++.+++ +..+|.+|.
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEec
Confidence            111112345555543 467888765

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.39  E-value=0.00023  Score=60.93  Aligned_cols=87  Identities=17%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----C---CHHhh-cCCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----E---DLDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~---~l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      .+++.|+|+|.+|+.+++.|...|. |.+.|+++...+ ..+.++...    .   .++++ ++++|.|+++++..+.  
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~--  190 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE--  190 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH--
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH--
Confidence            5689999999999999999999999 999998765555 555555422    1   23344 6789999999984432  


Q ss_pred             hcchHHHHhcCCCCCEEEE
Q 027577          108 GMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn  126 (221)
                      .+.-....+.+.+...++-
T Consensus       191 n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          191 TIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             HHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEE
Confidence            3333445566777645544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.38  E-value=0.00097  Score=59.80  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             cCCCCCEEEEEccC----------HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        32 ~~l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      ..+.|+||+|+|+-          +-...+++.|...|.+|.+|||... .+.....+  +....++++.++.+|+|+++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM-KEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCH-HHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCc-HHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            46899999999974          2478899999999999999998542 22222233  66677889999999999999


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ++-. +.+.+--....+.|+ ..+|+|+ |+
T Consensus       393 t~~~-~f~~~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          393 TEWK-EFRMPDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SCCG-GGSSCCHHHHHHHSS-SCEEEES-SC
T ss_pred             cCCH-HHhhcCHHHHHHhcC-CCEEEEC-CC
Confidence            9733 333322233444565 5688885 54

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.38  E-value=0.00011  Score=64.97  Aligned_cols=89  Identities=16%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC---CeEEEEcCCCCChhH-HHhc------Ccee-------cCCHHhhcCC--CCEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQL-EKET------GAKF-------EEDLDTMLPK--CDIVV   97 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~-~~~~------g~~~-------~~~l~ell~~--aDvVv   97 (221)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++++....+. +...      .+..       .+++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999998887   389999987533222 1111      1211       1345667776  89999


Q ss_pred             EeCCCChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .++|...  ..-+..   ..++.|..+++++--
T Consensus        82 n~ag~~~--~~~v~~---a~l~~g~~vvD~a~~  109 (405)
T 4ina_A           82 NIALPYQ--DLTIME---ACLRTGVPYLDTANY  109 (405)
T ss_dssp             ECSCGGG--HHHHHH---HHHHHTCCEEESSCC
T ss_pred             ECCCccc--ChHHHH---HHHHhCCCEEEecCC
Confidence            9987321  111222   223456677776543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.38  E-value=0.00019  Score=62.23  Aligned_cols=89  Identities=15%  Similarity=0.045  Sum_probs=63.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDvVv~~~p~~  103 (221)
                      .|++|.|+|.|.+|...++.++..|++|++.++++...+.++++|+..+     .++.+.    .  ...|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            5899999999999999999999999999999987655666777776422     122221    1  15788887776 1


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +     .-...++.++++..++.++.
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEec
Confidence            1     22445667777777777653

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.37  E-value=0.0017  Score=57.89  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHH----hcC-------ceecCCHHhhc-C
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK----ETG-------AKFEEDLDTML-P   91 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~----~~g-------~~~~~~l~ell-~   91 (221)
                      .++.|+||.|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+...    +.+       .+.+ +.++++ .
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~  309 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGL  309 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTC
T ss_pred             CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcC
Confidence            46899999999999999999999999999988 44442       11222111    111       2333 455665 3


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +||+++-|..     .+.++.+....++ -.+|+-.+.+.+ ..++- +.|.+..+.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~eA~-~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPAAD-DILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHHH-HHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHHHH-HHHHHCCCE
Confidence            7999999876     3445555556663 456666666665 44443 555555555

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=0.00041  Score=60.24  Aligned_cols=87  Identities=23%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEc--CCCCChhHHH---------------hcCceecCCHHhhcC-CCCEE
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHD--RVKMDPQLEK---------------ETGAKFEEDLDTMLP-KCDIV   96 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d--~~~~~~~~~~---------------~~g~~~~~~l~ell~-~aDvV   96 (221)
                      ++|+|+| .|.+|+.+++.|.... ++|.++.  +.........               ...+.. .+++++++ .+|+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIP-TDPKHEEFEDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEE-SCTTSGGGTTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEe-CCHHHHhcCCCCEE
Confidence            5899999 8999999999997664 5776664  2221111111               111111 24566656 89999


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ++|+|... ... +-.   ..++.|+.+|+.+.
T Consensus        88 ~~atp~~~-~~~-~a~---~~~~aG~~VId~s~  115 (354)
T 1ys4_A           88 FSALPSDL-AKK-FEP---EFAKEGKLIFSNAS  115 (354)
T ss_dssp             EECCCHHH-HHH-HHH---HHHHTTCEEEECCS
T ss_pred             EECCCchH-HHH-HHH---HHHHCCCEEEECCc
Confidence            99999321 111 112   22356888999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.37  E-value=0.00075  Score=57.66  Aligned_cols=98  Identities=23%  Similarity=0.275  Sum_probs=62.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhc--C-----cee---cCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKET--G-----AKF---EEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~--g-----~~~---~~~l~ell~~aDvVv~~~p~~  103 (221)
                      +||+|||. |.+|..++..|...|  .+|..+|+.+ ....+.++  .     +..   ..++++.+++||+|+++....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence            58999998 999999999998777  5899999865 22221111  1     222   136788899999999987532


Q ss_pred             hh---h-hhc------chH---HHHhcCCCCCEEEEcCCCCccCHHH
Q 027577          104 EK---T-RGM------FDK---DRIAKMKKGVLIVNNARGAIMDTQA  137 (221)
Q Consensus       104 ~~---t-~~~------i~~---~~~~~mk~ga~lIn~srg~~vd~~a  137 (221)
                      ..   + ..+      +-.   +.+....|++.+|++  ..++|.-.
T Consensus        80 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            11   1 001      111   122333588999997  45666554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.37  E-value=0.00023  Score=62.19  Aligned_cols=68  Identities=22%  Similarity=0.347  Sum_probs=48.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhcCceecCC---HHhhcCCCCEEEEe
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEED---LDTMLPKCDIVVVN   99 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~~---l~ell~~aDvVv~~   99 (221)
                      .-+.|+||+|+|.|.+|+.+++.++.+|++|+++|+.+.....  +...-+..+.+   +.++++++|+|+..
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            3478999999999999999999999999999999976532211  11100011222   56778889998664

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.36  E-value=0.00022  Score=61.68  Aligned_cols=90  Identities=14%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec---CC---HHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~---l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++...+.+. ++|...+   .+   +.++....|+|+-++....   
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~---  256 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH---  256 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence            689999999999999999999999999999998765555555 6775421   22   2233346899998886321   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .-...++.++++..++.++.
T Consensus       257 --~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          257 --ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             --CSHHHHTTEEEEEEEEECSC
T ss_pred             --HHHHHHHHhccCCEEEEeCC
Confidence              12446678899999998874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.36  E-value=0.00018  Score=62.62  Aligned_cols=90  Identities=23%  Similarity=0.275  Sum_probs=66.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC--------CCCEEEEeC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP--------KCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~--------~aDvVv~~~  100 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+     .++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            48999999999999999999999999 89999987666667777776532     23333332        479999887


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .. +.    .-...+..++++..++.++-
T Consensus       262 G~-~~----~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GV-AE----TVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CC-HH----HHHHHHHHEEEEEEEEECSC
T ss_pred             CC-HH----HHHHHHHHhccCCEEEEEec
Confidence            62 21    22456677889988888864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.35  E-value=0.0011  Score=59.63  Aligned_cols=97  Identities=15%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEccCH----------HHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-------------CceecCCHHhh
Q 027577           33 DLEGKTVGTVGCGR----------IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------GAKFEEDLDTM   89 (221)
Q Consensus        33 ~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------------g~~~~~~l~el   89 (221)
                      .+.|+||+|+|+.-          -...+++.|...|.+|.+|||.....+.....             ++....+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            48899999999764          78889999999999999999964222211111             24455678889


Q ss_pred             cCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus        90 l~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      ++.+|+|++++.-. +.+.+-.......|+...+|+|. |+-
T Consensus       406 ~~~ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999999843 33333223445567776668886 543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=97.35  E-value=0.00091  Score=58.15  Aligned_cols=97  Identities=18%  Similarity=0.233  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEccC--HHHHHHHHHHccCCCeEEEEcCCCC-Ch-hH---H----HhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKM-DP-QL---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~iA~~l~~~G~~V~~~d~~~~-~~-~~---~----~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .|.|.+|++||=|  +++++++..+..+|++|.+..|... .. +.   +    ++.|  +....+++++++++|+|..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            5889999999975  9999999999999999999987542 11 12   1    1345  55578999999999999884


Q ss_pred             CC----CC--hh-----hhhcchHHHHhcCC---CCCEEEEcCC
Q 027577          100 TP----LT--EK-----TRGMFDKDRIAKMK---KGVLIVNNAR  129 (221)
Q Consensus       100 ~p----~~--~~-----t~~~i~~~~~~~mk---~ga~lIn~sr  129 (221)
                      .=    ..  ++     ...-++.+.++..+   ++++|+.+.-
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            42    00  11     12346778888888   8888888754

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.35  E-value=0.00049  Score=58.24  Aligned_cols=89  Identities=13%  Similarity=0.188  Sum_probs=59.7

Q ss_pred             CEEEEEc-cCHHHHHHHHHHc-cCCCeEE-EEcCCCCC---hh--HH---HhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMD---PQ--LE---KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~---~~--~~---~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .||+|+| +|+||+.+++.+. .-++++. ++|++...   .+  ..   ...|+..+.++++++.++|+|+-+++  |+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            5899999 9999999999886 4578855 55775321   01  11   12466677899999999999997775  33


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .   ........++.|.-+|-.+.|
T Consensus       100 a---~~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          100 A---SVLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             H---HHHHHHHHHHHTCEEEECCCC
T ss_pred             H---HHHHHHHHHHcCCCEEEECCC
Confidence            2   111222335567777776666

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.35  E-value=0.00027  Score=59.99  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ..++.|+|. |++|+.+++.+...|++ |..+++.....+   -.|+..+.+++++.+  .+|++++++|  ++...-+-
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~ii~vp--~~~~~~~v   87 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN---VHGVPVFDTVKEAVKETDANASVIFVP--APFAKDAV   87 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCC--HHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCEEEEccC--HHHHHHHH
Confidence            345788898 99999999999988998 335555321111   247787889999998  8999999999  33222222


Q ss_pred             HHHHhcCCCCCE-EEEcCCCC-ccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVL-IVNNARGA-IMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~-lIn~srg~-~vd~~al~~al~~g~i~  148 (221)
                      .+..+   .|.- +|..+.|= ..+++.+.++.++..+.
T Consensus        88 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           88 FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22332   3333 55555552 23456788888876665

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.34  E-value=0.00015  Score=62.06  Aligned_cols=90  Identities=20%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc----CCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell----~~aDvVv~~~p~~~~  105 (221)
                      .|++|.|+|.|.+|...++.++..|.+|++.++++...+.++++|...+     .++.+.+    ...|+|+.++...+ 
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~-  244 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK-  244 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence            5889999999999999999999999999999987766677777776432     1222222    25788888875221 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          .-...+..++++..++.++-
T Consensus       245 ----~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          245 ----AFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             ----HHHHHHHHEEEEEEEEECSC
T ss_pred             ----HHHHHHHHhccCCEEEEeCC
Confidence                22456677888888888764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.33  E-value=0.00031  Score=62.88  Aligned_cols=116  Identities=15%  Similarity=0.182  Sum_probs=73.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC--C--hhHHHhcCceec--CCHHhhcCC-CCEEEEeCCC--
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM--D--PQLEKETGAKFE--EDLDTMLPK-CDIVVVNTPL--  102 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~--~--~~~~~~~g~~~~--~~l~ell~~-aDvVv~~~p~--  102 (221)
                      .++.||+|.|||+|..|.++|+.|+..|++|.++|....  .  .+.+++.|+...  ...++++.+ +|+|+++...  
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~   84 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPY   84 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCT
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCC
Confidence            357899999999999999999999999999999998542  1  123455676542  233456666 8999886432  


Q ss_pred             -Chhh-----h--hcchH-HHHhcCCCCC-EEEEcCCCCccCHHHHHHHHHhCCc
Q 027577          103 -TEKT-----R--GMFDK-DRIAKMKKGV-LIVNNARGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       103 -~~~t-----~--~~i~~-~~~~~mk~ga-~lIn~srg~~vd~~al~~al~~g~i  147 (221)
                       +|..     .  .++.+ +.+..+.+.. +-|.-+.|+--...-+...|+....
T Consensus        85 ~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           85 NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             TSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             CChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence             2221     1  12322 3333333333 3344557776666666677776543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.33  E-value=0.00045  Score=57.07  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhhcCCCCEEEEeCCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell~~aDvVv~~~p~~  103 (221)
                      .++|.|.|.|.||+.+++.|...|++|++.+|+..........+++.+    .+++  +..+|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            479999999999999999999999999999997644443333444321    2333  78899999887643

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=97.32  E-value=0.0015  Score=56.15  Aligned_cols=96  Identities=17%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcc--CHHHHHHHHHHccCCCeEEEEcCCCCC---hh-H---HH----h--cC--ceecCCHHhhcCCCCE
Q 027577           33 DLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMD---PQ-L---EK----E--TG--AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        33 ~l~g~~vgIIG~--G~iG~~iA~~l~~~G~~V~~~d~~~~~---~~-~---~~----~--~g--~~~~~~l~ell~~aDv   95 (221)
                      .+.|.||++||=  .++.++++..+..+|++|.+..|....   .+ .   ++    +  .|  +....+++++++++|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            588999999995  499999999999999999999875422   11 1   11    1  34  4556899999999999


Q ss_pred             EEEe----CC-CCh---h-----hhhcchHHHHhcCCCCCEEEEcC
Q 027577           96 VVVN----TP-LTE---K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        96 Vv~~----~p-~~~---~-----t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      |..-    +. ..+   +     ...-++.+.++.+|++++|+.+.
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            9863    22 111   0     12346888888899999998864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00037  Score=59.89  Aligned_cols=91  Identities=16%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhcC-----CCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell~-----~aDvVv~~~p~  102 (221)
                      .|++|.|+|. |.||..+++.++..|++|++.++++...+.+++.|....      .++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4899999998 899999999999999999999987665566666665321      23333332     47999888762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      .+     .....+..|+++..+|+++..
T Consensus       249 ~~-----~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EA-----AIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HH-----HHHHHTTSEEEEEEEEECCCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEeCC
Confidence            12     224567788888899988753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.31  E-value=0.001  Score=56.86  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             CCEEEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC--hhHHHhcCceec--CCHHhhc-CCCCEEEEeC--C-CChhh
Q 027577           36 GKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE--EDLDTML-PKCDIVVVNT--P-LTEKT  106 (221)
Q Consensus        36 g~~vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~--~~l~ell-~~aDvVv~~~--p-~~~~t  106 (221)
                      .|+|.|||.|.+|.+ +|+.|+..|++|.++|.+...  .+.+++.|+...  .+.+++. .++|+|+...  | .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            579999999999996 999999999999999986532  234455677543  3445555 5799998863  2 23322


Q ss_pred             h-------hcch-HHHHhc--CCCC-CEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          107 R-------GMFD-KDRIAK--MKKG-VLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       107 ~-------~~i~-~~~~~~--mk~g-a~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      .       .++. .+.+..  ++.. .+-|--+.|+--...-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            1       1232 233332  2322 3445556788777777777777644

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.31  E-value=0.00022  Score=59.86  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             cCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .++.|+++.|+| .|.+|+++++.|...|++|++++|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            457899999999 99999999999999999999999864

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=97.31  E-value=0.0015  Score=58.74  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=67.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEc-------CCCCChhHH------Hhc-------------Cceec
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD-------RVKMDPQLE------KET-------------GAKFE   83 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d-------~~~~~~~~~------~~~-------------g~~~~   83 (221)
                      +.+|.|+||.|-|+|++|...|+.|...|.+|+ +.|       +.....+..      +..             +.+.+
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            346899999999999999999999999999987 344       322211110      000             22333


Q ss_pred             CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcC-CCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~m-k~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      + .++++ ..||+.+-|..     .+.|+.+....+ +.++.+|--+.-..+..+| .+.|.+..|.
T Consensus       327 ~-~~~~~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 P-NEKPWGVPCTLAFPCAT-----QNDVDLDQAKLLQKNGCILVGEGANMPSTVDA-INLFKSNNII  386 (470)
T ss_dssp             S-SCCTTSSCCSEEEECSS-----TTCBCSHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHTTCE
T ss_pred             c-CcCeeecCccEEEeccc-----cCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHH-HHHHHHCCcE
Confidence            2 12333 47999988874     345655544444 2334444444444456666 6777777776

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.30  E-value=0.00033  Score=59.72  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-----HHh---c--C--ceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-----EKE---T--G--AKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-----~~~---~--g--~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ||+|||.|.||..++..+...|+ +|..+|.+....+.     .+.   .  .  +....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998876676 69999987543221     111   1  2  2333465 67899999999976332


Q ss_pred             h-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCH
Q 027577          105 K-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       105 ~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      .           +..++..  +.+....|++.+|+++-  ++|.
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~  121 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA  121 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence            1           1111110  12233358999999743  5553

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.29  E-value=0.00021  Score=61.76  Aligned_cols=67  Identities=22%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCCeEEEE-cCCCCChh-HHHhc------------------CceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~-d~~~~~~~-~~~~~------------------g~~~~~~l~ell~~aDv   95 (221)
                      .+|||+|+|.||+.+++.|.. -++++.+. |+++.... .+...                  ++....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999876 46776554 55432111 11111                  11111256677789999


Q ss_pred             EEEeCCCC
Q 027577           96 VVVNTPLT  103 (221)
Q Consensus        96 Vv~~~p~~  103 (221)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999943

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.28  E-value=0.00096  Score=57.77  Aligned_cols=86  Identities=17%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCCh-hHHH------h-cCceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEK------E-TGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~-~~~~------~-~g~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      ++|+|+| .|.||+.+++.|.... +++.++....... +...      . .... +.++++ +..+|+|++|+|.... 
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~s-   81 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGVF-   81 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHHH-
Confidence            5899999 7999999999997654 4766655432111 1111      0 1111 234444 5789999999994432 


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .. +-.   ..++.|+.+|+.|.
T Consensus        82 ~~-~a~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           82 AR-EFD---RYSALAPVLVDLSA  100 (345)
T ss_dssp             HH-THH---HHHTTCSEEEECSS
T ss_pred             HH-HHH---HHHHCCCEEEEcCc
Confidence            11 112   23467889999875

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.27  E-value=0.00077  Score=58.59  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC------CeEEEEc-CCCC-C-hhH----HH---hcCceecCCHHhhcCCCCEEEEe
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN------CNLLYHD-RVKM-D-PQL----EK---ETGAKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G------~~V~~~d-~~~~-~-~~~----~~---~~g~~~~~~l~ell~~aDvVv~~   99 (221)
                      ++|+|+| .|.+|+.+.+.|...+      .++..+. ++.. . ...    +.   ...+... +.+ .+..+|+|++|
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~~-~~~~~DvVf~a   87 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EAA-VLGGHDAVFLA   87 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CHH-HHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CHH-HhcCCCEEEEC
Confidence            6899999 9999999999998776      4666654 3221 1 110    11   1112222 333 35689999999


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      +|...      ..+....++.|+.+|+.|..--
T Consensus        88 lg~~~------s~~~~~~~~~G~~vIDlSa~~R  114 (352)
T 2nqt_A           88 LPHGH------SAVLAQQLSPETLIIDCGADFR  114 (352)
T ss_dssp             CTTSC------CHHHHHHSCTTSEEEECSSTTT
T ss_pred             CCCcc------hHHHHHHHhCCCEEEEECCCcc
Confidence            99432      2333333367899999985443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.27  E-value=0.00031  Score=54.83  Aligned_cols=67  Identities=19%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~  102 (221)
                      +|+|.|.|. |.||+.+++.|.+.|++|++.+|++.........++..       .++++++++.+|+|+.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            489999997 99999999999999999999998653221110112221       12455778899999988764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.27  E-value=0.00038  Score=58.46  Aligned_cols=89  Identities=20%  Similarity=0.331  Sum_probs=58.6

Q ss_pred             CEEEEEc-cCHHHHHHHHHHcc-CCCeEEE-EcCCCCCh------hHH-HhcCceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLLY-HDRVKMDP------QLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~-~G~~V~~-~d~~~~~~------~~~-~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .||+|+| +|.||+.+++.+.. -++++.+ +|++....      +.. ...++...++++++++++|+|+-+++  ++.
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~--p~a   85 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL--PEG   85 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC--HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC--HHH
Confidence            6899999 89999999998864 4778665 68753211      000 01156666899999999999998886  332


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ..   .-....++.|.-+|-.+.|
T Consensus        86 ~~---~~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           86 TL---VHLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             HH---HHHHHHHHHTCEEEECCCC
T ss_pred             HH---HHHHHHHHcCCCEEEECCC
Confidence            11   1122234556677766666

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.25  E-value=0.00015  Score=57.03  Aligned_cols=89  Identities=12%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCH-H---hhc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL-D---TML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l-~---ell--~~aDvVv~~~p~  102 (221)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+.+++.|....     .+. +   +..  ...|+|+.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            589999999 6999999999999999999999986543334444443211     111 1   111  13677766553 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ..    .....+..|+++..+|+++.
T Consensus       117 -~~----~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          117 -GE----AIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             -TH----HHHHHHHTEEEEEEEEECSC
T ss_pred             -hH----HHHHHHHHhccCCEEEEEcC
Confidence             11    12345566677767776654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.24  E-value=0.0012  Score=57.40  Aligned_cols=87  Identities=15%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCC-hhHHHhc----Cc---e-ecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKET----GA---K-FEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~-~~~~~~~----g~---~-~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ..+|+|+| .|.+|+.+++.|.... +++.++...... .......    +.   . .+.+ ++.++.+|+|++|+|...
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~   94 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT   94 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence            46899999 8999999999997765 477766543211 1111111    11   0 1122 455678999999998332


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .      .+.....+.|+.+|+.+.
T Consensus        95 s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           95 T------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             H------HHHHHTSCTTCEEEECSS
T ss_pred             H------HHHHHHHhCCCEEEECCc
Confidence            2      222222277899999885

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.24  E-value=0.00053  Score=61.00  Aligned_cols=108  Identities=13%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCCC------------CChhHH----HhcC-------ceecCCHH
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK------------MDPQLE----KETG-------AKFEEDLD   87 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~------------~~~~~~----~~~g-------~~~~~~l~   87 (221)
                      .++.|+||.|.|+|++|+.+|+.|...|.+|+ +.|.+.            ...+..    .+.+       .+.+ +.+
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~  286 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDE  286 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC--------------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Ccc
Confidence            46889999999999999999999999999988 445541            111111    1111       1222 223


Q ss_pred             hhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        88 ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +++ .+||+++-|..     .+.++.+....+ ...+|+-.+.+.+- .++ .+.|.+..+.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~ea-~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PEG-DKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HHH-HHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HHH-HHHHHHCCCE
Confidence            444 36999998876     345777777777 35677777777753 443 3455555555

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.24  E-value=0.00019  Score=61.63  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhcCceecCCHH-------hhcC--CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TMLP--KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-------ell~--~aDvVv~~~p~~  103 (221)
                      .|++|.|+|.|.+|...++.++.+  |.+|++.++++...+.++++|...+-+..       ++-.  ..|+|+-++.. 
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~-  248 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGT-  248 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCC-
Confidence            689999999999999999999998  99999999876556667777764322221       1221  57888888762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.    .-...++.++++..++.++.
T Consensus       249 ~~----~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          249 EE----TTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             hH----HHHHHHHHhhcCCEEEEeCC
Confidence            21    12345677788888887753

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.24  E-value=0.00065  Score=57.97  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +||+|||.|.+|.+++..+...+  -++..+|......+. +.++        .+....+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999987666  479999986422211 1111        112111336678999999998864321


Q ss_pred             -----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCH
Q 027577          106 -----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       106 -----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                                 +..++..  +.+....|+++++++  ..++|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  121 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA--TNPVDV  121 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC--SSSHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe--cCchHH
Confidence                       0111110  122333789999997  445554

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.23  E-value=0.00088  Score=57.77  Aligned_cols=100  Identities=12%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh--c----CceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE--T----GAKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~--~----g~~~~~~l~ell~~aDvVv~~   99 (221)
                      ....++|+|||.|.||..+|..+...|.  ++..+|.+....+     ....  .    .+....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            4567899999999999999998877776  8999998642111     1111  0    112234555 58999999998


Q ss_pred             CCCCh---hhh-hcch--H-------HHHhcCCCCCEEEEcCCCCccCH
Q 027577          100 TPLTE---KTR-GMFD--K-------DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       100 ~p~~~---~t~-~~i~--~-------~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      .....   .++ .++.  .       +.+....|++++++++  .++|.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvdi  141 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVDI  141 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHHH
Confidence            64211   111 1111  1       1233447899999998  44543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.22  E-value=0.0043  Score=55.03  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=71.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHH----hcC-ce--ecCCHHhhc-CCCCE
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK----ETG-AK--FEEDLDTML-PKCDI   95 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~----~~g-~~--~~~~l~ell-~~aDv   95 (221)
                      .+|.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+...    +.+ +.  .. +.++++ -.||+
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DV  292 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEV  292 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSE
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceE
Confidence            46899999999999999999999999999988 44542       22222211    222 11  11 223433 47999


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ++-|..     .+.++.+....++ =.+|+..+.+.+ ..++ .+.|.+..|.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~-t~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGL-NPEA-EAYLLGKGAL  337 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCB-CHHH-HHHHHHHTCE
T ss_pred             EEeccc-----ccccccchHhhCC-ceEEEECCCCcC-CHHH-HHHHHHCCCE
Confidence            998875     4557777777774 357888887775 4444 3556666665

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.22  E-value=0.00045  Score=59.32  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhh----c--CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----L--PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l--~~aDvVv~~~p~~  103 (221)
                      .|++|.|+|. |.||...++.++.+|++|++.+++....+.++++|...+    .++.+.    .  ...|+|+-++.. 
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~-  237 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG-  237 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch-
Confidence            5899999998 999999999999999999999987766677777775422    122222    2  147888887762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +     .....+..++++..++.++
T Consensus       238 ~-----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          238 P-----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             h-----HHHHHHHhhcCCCEEEEEE
Confidence            1     2345667788888888775

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.22  E-value=0.00046  Score=59.11  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             CCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDvVv~~~p~  102 (221)
                      .|++|.|+|.| .||...++.++..|++|++.+++....+.++++|...+     .++.+.    .  ...|+|+-++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            58999999987 99999999999999999999988877777777776422     122222    1  258999888762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       +.+     .+.+..++++..++.++-
T Consensus       224 -~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 -PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             -hhH-----HHHHHHhcCCCEEEEEee
Confidence             211     234577888888888864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.21  E-value=0.00053  Score=59.77  Aligned_cols=67  Identities=22%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH--HHhcCceecC---CHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEE---DLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~~---~l~ell~~aDvVv~~   99 (221)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+.....  +...-+....   .+.++++++|+|+..
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~   80 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYE   80 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceec
Confidence            467999999999999999999999999999999986543211  1110000112   245667789988663

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.20  E-value=0.00064  Score=58.91  Aligned_cols=68  Identities=21%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh----cCceecCCHHhhcCCCCEEEEeCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE----TGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~----~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      +.++||+|||. |.+|..+|..+...|.  +|..+|......+     ....    ..+....++.+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999997 9999999998887774  7999998542211     1111    123334678888999999999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.16  E-value=0.00026  Score=60.98  Aligned_cols=89  Identities=20%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHh----hcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll~--~aDvVv~~~p~  102 (221)
                      .|.+|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+     .++.+    +..  ..|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            48899999999999999999999999 79999987655667777776432     12222    221  47888887762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+     .-...+..++++..++.++
T Consensus       246 ~~-----~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          246 VH-----TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECC
T ss_pred             hH-----HHHHHHHHHhcCCEEEEec
Confidence            21     2244566788888888775

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.16  E-value=0.0022  Score=56.91  Aligned_cols=109  Identities=15%  Similarity=0.270  Sum_probs=72.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHHhc----C------ceecCCHHhhc-C
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----G------AKFEEDLDTML-P   91 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~----g------~~~~~~l~ell-~   91 (221)
                      +.++.|+||.|.|+|++|+..|+.|...|.+|+ +.|.+       ....+...+.    +      .+.+ +.++++ .
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~  294 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEK  294 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHS
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceec
Confidence            457899999999999999999999999999975 44543       1122222211    1      2222 345544 5


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +||+++-|..     .+.|+.+....++ -.+|+-.+.+.+ ..+ ..+.|.+..|.
T Consensus       295 ~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI~  343 (424)
T 3k92_A          295 DCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGVL  343 (424)
T ss_dssp             CCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             cccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCCE
Confidence            7999998876     3567666666663 456666677764 443 45667777665

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.16  E-value=0.00044  Score=58.52  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-CCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      .|++|.|+|.|.+|...++.++..|++|++.+ ++...+.++++|+..+ .+.+++-...|+|+-++.. +..     ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HH
Confidence            58999999999999999999999999999999 7777888888887543 2333333468888887762 211     34


Q ss_pred             HHhcCCCCCEEEEcC
Q 027577          114 RIAKMKKGVLIVNNA  128 (221)
Q Consensus       114 ~~~~mk~ga~lIn~s  128 (221)
                      .++.++++..++.++
T Consensus       215 ~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          215 LVPSLKANGHIICIQ  229 (315)
T ss_dssp             TGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEe
Confidence            567788888888874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.16  E-value=0.00033  Score=59.70  Aligned_cols=89  Identities=20%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVv~~~p~  102 (221)
                      .|++|.|.|. |.||..+++.++..|++|++.+++....+.+++.|....      .++.+.+     ...|+++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5899999997 999999999999999999999986544444555554211      2222222     146888777751


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .    .....+..++++..++.++-
T Consensus       225 --~----~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --E----FLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --H----HHHHHHTTEEEEEEEEECCC
T ss_pred             --H----HHHHHHHHHhcCCEEEEEec
Confidence              1    12456677788888887763

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.15  E-value=0.00069  Score=57.51  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcC--C-CCEEEEeCCCChhhhhcc
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--K-CDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~-aDvVv~~~p~~~~t~~~i  110 (221)
                      ..++.|+|. |++|+.+++.+...|++ |..+++.....+   ..|+..+.+++++.+  . +|++++++|. +.+...+
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v   88 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSE---VHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV   88 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH
Confidence            445777798 99999999999888998 345565321111   247887889999886  5 9999999992 2222222


Q ss_pred             hHHHHhcCCCCCE-EEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVL-IVNNARGAI-MDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~-lIn~srg~~-vd~~al~~al~~g~i~  148 (221)
                       .+..+   .|.- +|..+.|=. .+++.+.++.++..+.
T Consensus        89 -~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           89 -YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             -HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             -HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence             22222   2333 555555522 3456788888876664

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.15  E-value=0.00065  Score=58.59  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCHHHHHH-HHHH-ccCCCe-EEEEcCCCC---ChhHHHhcCceec----CCHHh---hcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGCGRIGKLL-LQRL-KPFNCN-LLYHDRVKM---DPQLEKETGAKFE----EDLDT---MLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~i-A~~l-~~~G~~-V~~~d~~~~---~~~~~~~~g~~~~----~~l~e---ll~~aDvVv~~~  100 (221)
                      +.+++|.|+|.|.+|... ++.+ +.+|.+ |++.++++.   ..+.++++|+..+    .++.+   +-...|+|+-++
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~  250 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEAT  250 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECC
Confidence            345899999999999999 9999 999998 999998776   5677778887543    11222   101478888777


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .. +.    .-...++.++++..++.++.
T Consensus       251 g~-~~----~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          251 GF-PK----HAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CC-HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             CC-hH----HHHHHHHHHhcCCEEEEEeC
Confidence            62 11    12345667788878877753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.15  E-value=0.00026  Score=61.37  Aligned_cols=90  Identities=18%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc----C-CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----P-KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell----~-~aDvVv~~~p~~  103 (221)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|...+     .++.+.+    . ..|+|+-++.. 
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~-  268 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS-  268 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCC-
Confidence            58899999999999999999999999 69999987656666777775421     1222222    1 47888888762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.    .-...+..++++..++.++-
T Consensus       269 ~~----~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          269 PE----ILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HH----HHHHHHHTEEEEEEEEECCC
T ss_pred             HH----HHHHHHHHHhcCCEEEEeCC
Confidence            11    12456677888888888764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.12  E-value=0.00094  Score=59.35  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=66.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCH------------------------H--
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL------------------------D--   87 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l------------------------~--   87 (221)
                      .|++|.|+|. |.||...++.++..|.+|++.+++....+.++++|...+-+.                        +  
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  299 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV  299 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence            5899999998 999999999999999999998876655666677776422111                        1  


Q ss_pred             -hhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           88 -TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        88 -ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ++. ...|+|+-++..  .    .....+..++++..+|+++.
T Consensus       300 ~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          300 VEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             HHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence             111 358999998862  1    22456778999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.12  E-value=0.00044  Score=62.20  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCceec----CC---HHhh-cCCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE----ED---LDTM-LPKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~~---l~el-l~~aDvVv~~~p~~  103 (221)
                      ..|+|-|+|+|.+|+.+|+.|...|++|.+.|.++...+.+ ..+++..+    .+   |+++ +++||+++.+++..
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            36799999999999999999999999999999875443333 23454322    12   3333 57899998887743

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.12  E-value=0.00046  Score=59.47  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--------CCeE-EEEcCCCCChhH-------HH---hcCce-ecC---CHHhhc-CC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNL-LYHDRVKMDPQL-------EK---ETGAK-FEE---DLDTML-PK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--------G~~V-~~~d~~~~~~~~-------~~---~~g~~-~~~---~l~ell-~~   92 (221)
                      .+|||||+|.||+.+++.+...        +++| .++|++......       ..   ..++. ..+   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            4799999999999999988653        3565 456765421111       11   11221 233   788887 46


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      .|+|+.|+|.. .+.....+-....|+.|..+|......+. .-+.|.++.++.++.
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999954 11111222344567788888876554432 335566666655544

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.12  E-value=0.00047  Score=61.89  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             CCEEEEEccCHH-HHHHHHHHcc----C-CCeEEEEcCCC--CChhH----HH----hcC----ceecCCHHhhcCCCCE
Q 027577           36 GKTVGTVGCGRI-GKLLLQRLKP----F-NCNLLYHDRVK--MDPQL----EK----ETG----AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        36 g~~vgIIG~G~i-G~~iA~~l~~----~-G~~V~~~d~~~--~~~~~----~~----~~g----~~~~~~l~ell~~aDv   95 (221)
                      .+||+|||.|.+ |.+++..|..    + +.+|..||+.+  ...+.    ..    ..+    +....++++.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999998 8887666544    2 55799999865  32211    11    111    2334688889999999


Q ss_pred             EEEeCCC
Q 027577           96 VVVNTPL  102 (221)
Q Consensus        96 Vv~~~p~  102 (221)
                      |++++|.
T Consensus        87 VVitagv   93 (450)
T 1s6y_A           87 VTTQFRV   93 (450)
T ss_dssp             EEECCCT
T ss_pred             EEEcCCC
Confidence            9999984

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.12  E-value=0.0017  Score=58.76  Aligned_cols=100  Identities=12%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             ccCCCCCEEEEEccCH----------HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577           31 AYDLEGKTVGTVGCGR----------IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +..+.|++|+|+|+--          =...+++.|...|.+|.+|||....   ..  .+....++++.++.+|+|++++
T Consensus       348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~---~~--~~~~~~~~~~~~~~ad~vvi~t  422 (478)
T 3g79_A          348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN---YP--GVEISDNLEEVVRNADAIVVLA  422 (478)
T ss_dssp             TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC---BT--TBCEESCHHHHHTTCSEEEECS
T ss_pred             ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc---cc--CcceecCHHHHHhcCCEEEEec
Confidence            3468999999999642          4678999999999999999986431   11  2334568999999999999999


Q ss_pred             CCChhhhhcchHHHHhcCC-CCCEEEEcCCCCccCHHHH
Q 027577          101 PLTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk-~ga~lIn~srg~~vd~~al  138 (221)
                      +- ++.+.+--....+.|+ +..+|+|+ |+ +.|.+.+
T Consensus       423 ~~-~~f~~~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          423 GH-SAYSSLKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             CC-HHHHSCCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             CC-HHHHhhhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            73 3333332334455677 47899995 54 3454443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.11  E-value=0.0011  Score=57.48  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEE-cCCCCChhH---------------------HHhcCceecCCHHhhcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQL---------------------EKETGAKFEEDLDTMLPKC   93 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~~---------------------~~~~g~~~~~~l~ell~~a   93 (221)
                      .+|||+|+|.||+.+++.+... +++|.++ |.++.....                     +...++....+.++++..+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998765 5786655 432211110                     1111111122455566789


Q ss_pred             CEEEEeCCCChhhhhcchHHH-HhcCCCCCEEEEcC
Q 027577           94 DIVVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNA  128 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~-~~~mk~ga~lIn~s  128 (221)
                      |+|+.|+|.....     +.. -..++.|+.+|..+
T Consensus        83 DiV~eatg~~~s~-----~~a~~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGK-----QNLENIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHH-----HHHHHTTTTTTCEEEECT
T ss_pred             CEEEECCCccccH-----HHHHHHHHHCCCEEEECC
Confidence            9999999833211     111 24567777776544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.10  E-value=0.003  Score=56.97  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             CCCCCEEEEEccCH----------HHHHHHHHHccCCCeEEEEcCCCCChhHHHhc------------CceecCCHHhhc
Q 027577           33 DLEGKTVGTVGCGR----------IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET------------GAKFEEDLDTML   90 (221)
Q Consensus        33 ~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~------------g~~~~~~l~ell   90 (221)
                      .+.|++|+|+|+--          -...+++.|...|.+|.+|||.. ..+....+            .+....++++.+
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVA-QEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTT-HHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCc-cHHHHHhhccccccccccccceeecCCHHHHH
Confidence            68999999999642          57789999999999999999863 12211112            255667889999


Q ss_pred             CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHH
Q 027577           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ  136 (221)
Q Consensus        91 ~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~  136 (221)
                      +.+|+|++++.-. +.+.+-.....+.|+ ..+|+|+ |+ +.+.+
T Consensus       404 ~~ad~~vi~t~~~-~f~~~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFKSPDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TTCSEEEECSCCG-GGGSCCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             hCCCEEEEecCCh-HhhccCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            9999999999843 333322233445565 4789987 43 34544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.10  E-value=0.00035  Score=59.67  Aligned_cols=89  Identities=21%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHH-HhcCceec-----CCHHhhc-----CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~  102 (221)
                      .|++|.|+|. |.||..+++.++..|++|++.++++...+.+ +++|...+     .++.+.+     ...|+|+.++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            5899999998 9999999999999999999999876555555 56665321     1222222     247888877751


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       +     .....+..++++..++.++.
T Consensus       229 -~-----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          229 -E-----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             -H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             -c-----hHHHHHHHHhhCCEEEEEee
Confidence             1     23456677888888887764

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.09  E-value=0.0017  Score=56.50  Aligned_cols=87  Identities=22%  Similarity=0.296  Sum_probs=53.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEEcC-CCCChh---HH-H--h-c-------------------Cceec--CCH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR-VKMDPQ---LE-K--E-T-------------------GAKFE--EDL   86 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~-~~~~~~---~~-~--~-~-------------------g~~~~--~~l   86 (221)
                      .+|||+|+|.||+.+.+.|... .++|.+.+. .. ..+   .. +  + .                   .+...  .++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~-~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp   96 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFM-DVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP   96 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTS-CHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCC-ChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence            4899999999999999998765 678776653 22 221   10 0  0 0                   01111  144


Q ss_pred             Hhhc---CCCCEEEEeCCCChhhhhcchHHHHhcCCCCC--EEEEcCC
Q 027577           87 DTML---PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV--LIVNNAR  129 (221)
Q Consensus        87 ~ell---~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga--~lIn~sr  129 (221)
                      +++-   ..+|+|+.|+|....     .+..-..++.|+  +||+.+.
T Consensus        97 ~~i~w~~~~vDvV~eatg~~~s-----~e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           97 AEIPWGASGAQIVCESTGVFTT-----EEKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCS-----HHHHGGGGTTTCSEEEESSCC
T ss_pred             HHCCcccCCCCEEEECCCchhh-----HHHHHHHHHcCCcEEEEeCCC
Confidence            4432   479999999983221     122334466788  8888764

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=97.09  E-value=0.0056  Score=55.32  Aligned_cols=106  Identities=23%  Similarity=0.365  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE--------cCCCCChhHHH----hcC-------ceecCCHHhhc-CC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETG-------AKFEEDLDTML-PK   92 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g-------~~~~~~l~ell-~~   92 (221)
                      +|.|+||.|-|+|++|+..|+.|...|.+|+++        |+.....+...    +.|       .+.+.+  +++ .+
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998763        33322222211    111       122222  333 57


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      |||.+-|..     .+.|+.+....++ -.+|+-.+.+. ...++ .+.|.+..|.
T Consensus       319 ~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             ceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            999988764     4567777777775 35666666775 55554 4566666665

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.08  E-value=0.00042  Score=59.52  Aligned_cols=89  Identities=24%  Similarity=0.286  Sum_probs=62.3

Q ss_pred             CCCEEEEE-ccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CCCCEEEEeCCCCh
Q 027577           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE  104 (221)
Q Consensus        35 ~g~~vgII-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVv~~~p~~~  104 (221)
                      .|++|.|+ |.|.+|...++.++..|++|++.++++...+.++++|...+    +++.+.+     ...|+|+-|+.. +
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~-~  228 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT-D  228 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH-H
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCc-h
Confidence            68999999 69999999999999999999999987655666677775422    1222222     247888877651 1


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                          ..-...+..++++..+|.++
T Consensus       229 ----~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          229 ----MYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ----HHHHHHHHHEEEEEEEEESS
T ss_pred             ----HHHHHHHHHhccCCEEEEEC
Confidence                11234566777877777764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.08  E-value=0.00055  Score=58.22  Aligned_cols=89  Identities=19%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDvVv~~~p~  102 (221)
                      .|++|.|+| .|.+|...++.++..|++|++.++++...+.++++|...+     .++.+.    .  ...|+|+-++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 8999999999999999999999987655666666665321     122221    1  257888887762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .    .-...+..++++..++.++.
T Consensus       220 --~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          220 --D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             --G----GHHHHHTTEEEEEEEEECCC
T ss_pred             --H----HHHHHHHHhcCCCEEEEEec
Confidence              1    23456778888888888763

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.08  E-value=0.00056  Score=58.07  Aligned_cols=88  Identities=22%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CC-HHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~-l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|.+|.|+| .|.+|...++.++..|++|++.++.. ..+.++++|+..+     .+ +.+.+...|+|+-++.. +   
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~---  226 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-D---  226 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-H---
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-H---
Confidence            588999997 99999999999999999998887533 3566677776422     23 55666789999998861 1   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .. ...++.++++..++.++.
T Consensus       227 -~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          227 -VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             -HH-HHHGGGEEEEEEEEECCS
T ss_pred             -HH-HHHHHhccCCCEEEEeCC
Confidence             12 567888999999998853

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.07  E-value=0.00094  Score=57.31  Aligned_cols=96  Identities=24%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCC--CeEEEEcCCCCChhHH---HhcC----cee---cCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLE---KETG----AKF---EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~---~~~g----~~~---~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+||+|+| .|.+|..++..|...|  .+|.++|+.+. ....   ....    +..   ..++++.++.+|+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            46899999 8999999999998777  68999997543 1111   1111    111   22567889999999999863


Q ss_pred             Chhhhhc-----------chH---HHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 TEKTRGM-----------FDK---DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 ~~~t~~~-----------i~~---~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ... .+.           +-.   +.+....+.+++++.+  .++|.
T Consensus        87 ~~~-~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           87 PRK-PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             CCC-SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            221 110           111   1122335788999864  56665

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.07  E-value=0.00094  Score=53.71  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      +.+|+|.|.| .|.||+.+++.|...|+  +|++.+|++...+.....++.       ..++++++++.+|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999 69999999999999999  999999876432211111121       1235667788999999988644

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.07  E-value=0.00044  Score=57.21  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             HHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-------------------hh
Q 027577           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQ   73 (221)
Q Consensus        14 ~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-------------------~~   73 (221)
                      .+++.-..|....    ...|.+++|.|||+|.+|..+++.|...|. ++.++|.....                   .+
T Consensus        10 ~Rq~~l~~~g~~~----q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~   85 (251)
T 1zud_1           10 SRQILLDDIALDG----QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ   85 (251)
T ss_dssp             HHHHTSTTTHHHH----HHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             hhhcchhhcCHHH----HHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHH
Confidence            4444445575321    236889999999999999999999999998 68888764211                   01


Q ss_pred             HH----Hhc--Cc--eec------CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           74 LE----KET--GA--KFE------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        74 ~~----~~~--g~--~~~------~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+    .+.  ++  ...      ++++++++++|+|+.++. +.+++..+++.....   +..+|+.+
T Consensus        86 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           86 VSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence            11    111  11  111      134567788999998886 667777777665542   34455543

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=97.06  E-value=0.0033  Score=53.92  Aligned_cols=67  Identities=6%  Similarity=-0.010  Sum_probs=53.4

Q ss_pred             CCCCCEEEE-----EccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGT-----VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgI-----IG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .+. .+|++     +|=+++.++++..+..+|++|.+..|...........++....+++++++++|+|..-.
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~  237 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN  237 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecC
Confidence            356 79999     99999999999999999999999998653322211135676789999999999998843

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.06  E-value=0.00041  Score=59.87  Aligned_cols=102  Identities=12%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---------CCeE-EEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---------G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t  106 (221)
                      .+|||||+|.||+.+++.+...         +++| .++|++........ . ...++++++++ +.|+|+.|+|.....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~-~-~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP-Q-ELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC-G-GGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC-c-ccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            4799999999999999988654         4564 45676543221110 0 12346888888 999999999844211


Q ss_pred             hhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhC
Q 027577          107 RGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG  145 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g  145 (221)
                      .    .-....|+.|..+|......+ ..-+.|.++.++.
T Consensus        81 ~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 L----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             H----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             H----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            1    112335667777777533322 2445666666655

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.05  E-value=0.00072  Score=56.71  Aligned_cols=90  Identities=20%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHc-cCCCeEE-EEcCCCCC---hhHH-----HhcCceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLK-PFNCNLL-YHDRVKMD---PQLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~-~~G~~V~-~~d~~~~~---~~~~-----~~~g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .++|+|+|+ |.||+.+++.+. .-|+++. ++|+.+..   .+..     ...++...+++++++.++|+|+-+++  |
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~--p   82 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR--P   82 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC--H
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC--h
Confidence            368999998 999999999875 5578865 67765421   0110     11234445678888889999995554  3


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +...   .-....++.|.-+|-...|
T Consensus        83 ~~~~---~~~~~a~~~G~~vVigTtG  105 (273)
T 1dih_A           83 EGTL---NHLAFCRQHGKGMVIGTTG  105 (273)
T ss_dssp             HHHH---HHHHHHHHTTCEEEECCCC
T ss_pred             HHHH---HHHHHHHhCCCCEEEECCC
Confidence            3221   1122334456556654445

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.05  E-value=0.00048  Score=59.43  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             CCCEEEEE-ccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgII-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|++|.|+ |.|.||..+++.++..|++|++.++++...+.++++|...+     .++.+.+     ...|+|+-++.. 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            58999999 68999999999999999999999987655666666665421     1222222     257888888762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +     .-...+..++++..++.++.
T Consensus       246 ~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          246 A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHhccCCEEEEEEe
Confidence            1     23456777888888888763

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.04  E-value=0.002  Score=55.52  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=25.3

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~   67 (221)
                      .+|||+|+|.||+.+++.+.. -+++|.+.+.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            489999999999999999865 4678766653

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.04  E-value=0.0013  Score=59.33  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCC---eEEEEcCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNC---NLLYHDRVKM   70 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~---~V~~~d~~~~   70 (221)
                      ++|.|||+|.||+.+++.+.. .++   +|++.|+...
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            469999999999999998864 455   6888887653

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=97.04  E-value=0.0037  Score=53.23  Aligned_cols=68  Identities=24%  Similarity=0.332  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccC-CCeEEEEcCCCC--Chh---HHHhcCce--ecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM--DPQ---LEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~-G~~V~~~d~~~~--~~~---~~~~~g~~--~~~~l~ell~~aDvVv~~~  100 (221)
                      .+.|.||++||=   |++.++++..+..+ |++|.+..|...  +.+   .+++.|..  ...+++++++++|+|....
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  226 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTR  226 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCC
Confidence            589999999995   69999999999999 999999987532  222   22344543  4679999999999998753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.02  E-value=0.00046  Score=58.93  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDvVv~~~p~  102 (221)
                      .|++|.|+| .|.+|...++.++..|++|++.++++...+.++++|...+     .++.+.    .  ...|+|+-++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 8999999999999999999999987655566666665321     122221    1  247888777752


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                            -.-...+..++++..++.++.
T Consensus       228 ------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          228 ------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             ------GGHHHHHHHEEEEEEEEECCC
T ss_pred             ------HHHHHHHHHhccCCEEEEEcC
Confidence                  123445667777777777653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.01  E-value=0.00031  Score=59.07  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=35.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+|.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            47899999999999999999999999999999999754

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.00  E-value=0.0011  Score=59.47  Aligned_cols=71  Identities=18%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hcCceec--CCHHhhcCCCCEEEEeCCCCh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFE--EDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~--~~l~ell~~aDvVv~~~p~~~  104 (221)
                      .+++|++|.|||.|.+|...++.|...|.+|.++++... .+...   ..++...  .--++.+..+|+|+.++. .+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~-~~   83 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-DD   83 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-CH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC-HHHHHHHhcCCEEEEECCCCccccCCccEEEEcCC-CH
Confidence            468999999999999999999999999999999998532 22211   1233321  112345678998877654 44

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.00  E-value=0.0011  Score=57.21  Aligned_cols=89  Identities=15%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccC-CCeEEEEc-CC---CCChhHH------Hhc-CceecC--CHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD-RV---KMDPQLE------KET-GAKFEE--DLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d-~~---~~~~~~~------~~~-g~~~~~--~l~ell~~aDvVv~~~p  101 (221)
                      .+|+|+| .|.+|+.+.+.|... .+++..+. ++   .......      ... .....+  +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 699999999999874 45766553 32   1111111      111 122111  45565589999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      ... +.. +-.   ..++.|+.+|+.|..
T Consensus        85 ~~~-s~~-~~~---~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHD-LAP---QFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHH-HHH---HHHHTTCEEEECSST
T ss_pred             hHH-HHH-HHH---HHHHCCCEEEEcCCc
Confidence            221 111 112   224679999999853

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.00  E-value=0.00059  Score=59.47  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceec-C-C---HH-------hhcC--CCCEEEEe
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-E-D---LD-------TMLP--KCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~-------ell~--~aDvVv~~   99 (221)
                      .|++|.|+|.|.+|...++.++.+| .+|++.++++...+.++++|+..+ + +   -+       ++..  ..|+|+-+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            4889999999999999999999999 599999987666666777776421 1 1   11       1111  47888888


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +...+     .-...++.++++..++.++.
T Consensus       275 ~g~~~-----~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          275 TGDSR-----ALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             SSCTT-----HHHHHHHHEEEEEEEEECCC
T ss_pred             CCCHH-----HHHHHHHHHhcCCEEEEEec
Confidence            76221     12345667788888887764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.00  E-value=0.0035  Score=56.55  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEccC----------HHHHHHHHHHccCCCeEEEEcCCCCChh---HHHh-c-------CceecCCHHhhcC
Q 027577           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQ---LEKE-T-------GAKFEEDLDTMLP   91 (221)
Q Consensus        33 ~l~g~~vgIIG~G----------~iG~~iA~~l~~~G~~V~~~d~~~~~~~---~~~~-~-------g~~~~~~l~ell~   91 (221)
                      .+.|++|+|+|+-          +-...+++.|...|.+|.+|||.-...+   .... +       .+..+.++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            4899999999963          3678899999999999999998642211   1111 1       1344567888999


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      .+|+|++++.-. +.+.+--....+.|+...+|+|. |+ ++|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVELNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGTTSCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCcH-HhhccCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            999999999743 33333233445567776688886 54 4565543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=97.00  E-value=0.0044  Score=55.01  Aligned_cols=109  Identities=22%  Similarity=0.346  Sum_probs=69.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHHhc----Cc------------eecCCHH
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----GA------------KFEEDLD   87 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~----g~------------~~~~~l~   87 (221)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+       ....+...+.    +.            ..+.+.+
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~  285 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  285 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCch
Confidence            46899999999999999999999999999987 34442       1122222111    11            1221334


Q ss_pred             hhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        88 ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +++ ..||+++-|.-     .+.|+.+....++ =.+|+-.+.+.+ ..++ .+.|.+..+.
T Consensus       286 ~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          286 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  339 (421)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence            555 47999998874     3446666666664 356666666664 4444 4566766666

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.99  E-value=0.0015  Score=54.08  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=48.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~  102 (221)
                      |+|.|.| .|.||+.+++.|... |++|.+.+|++.........++..       .++++++++.+|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            5799999 599999999999887 999999998753322222223322       13456788999999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.98  E-value=0.00059  Score=58.40  Aligned_cols=89  Identities=25%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|++|.|+|. |.+|..+++.++..|++|++.+++....+.++ ++|....      .++.+.+     ...|+|+.++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5899999997 99999999999999999999998654445554 4554311      1222222     24677777765


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      . +     .....+..++++..++.++-
T Consensus       235 ~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          235 G-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             H-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            1 1     22445667777777777653

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=96.97  E-value=0.00072  Score=58.92  Aligned_cols=90  Identities=20%  Similarity=0.258  Sum_probs=53.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--C--CeEE-EEcCCCCChhHHHhc-CceecCCHHhhcCC------------------
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--N--CNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK------------------   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G--~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~~------------------   92 (221)
                      .+|||||+|.||+.+++.+...  |  ++|. ++|++.  ....... |+..++++++++++                  
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~   82 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTS   82 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTC
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhc
Confidence            4799999999999999999764  3  4554 455422  1111111 33333455555433                  


Q ss_pred             --CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577           93 --CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus        93 --aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                        .|+|+.|+|.....     ......|+.|..+|......+.
T Consensus        83 ~~~DvVV~~t~~~~~a-----~~~~~AL~aGkhVVtaNkkpla  120 (358)
T 1ebf_A           83 PKPVILVDNTSSAYIA-----GFYTKFVENGISIATPNKKAFS  120 (358)
T ss_dssp             SSCEEEEECSCCHHHH-----TTHHHHHHTTCEEECCCCGGGS
T ss_pred             cCCcEEEEcCCChHHH-----HHHHHHHHCCCeEEecCccccc
Confidence              27999999843211     1123456778888876555444

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.97  E-value=0.00047  Score=59.14  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCcee-c----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-E----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++ ... +    .++.+.+     ...|+|+-++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            78999999999999999999999999 899999865433444333 221 1    1222222     2478888877621


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.     -...+..|+++..++.++.
T Consensus       243 ~~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          243 AA-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEec
Confidence            11     2345667777777877754

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.96  E-value=0.0039  Score=55.76  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEE-EEcCC-------CCChhHHH------h-------------cCceec
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK------E-------------TGAKFE   83 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~-------~~~~~~~~------~-------------~g~~~~   83 (221)
                      +.++.|+||.|-|+|++|...|+.|...|.+|+ +.|.+       ....+...      +             .+.+.+
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            457899999999999999999999999999976 44532       22211111      1             122233


Q ss_pred             CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC--CCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk--~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       +.++++ .+||+.+-|.-     .+.|+.+....+.  .=.+|+-.+.+.+- .++ .+.|.+..|.
T Consensus       314 -~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T-~eA-~~iL~~rGI~  373 (456)
T 3r3j_A          314 -ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPTH-IKA-LHKLKQNNII  373 (456)
T ss_dssp             -CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCBC-TTH-HHHHHTTTCE
T ss_pred             -CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence             223433 46999887764     4567666666552  23466666666653 333 3566666665

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.95  E-value=0.0005  Score=59.54  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|...+     .++.+.+     ...|+|+-++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            589999999 7999999999999999999999987555556666665421     1232222     247888888762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +     .....++.|+++..+|.++.
T Consensus       242 ~-----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          242 A-----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHHhcCCEEEEEeC
Confidence            1     22456677888888888764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.95  E-value=0.00084  Score=56.86  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             cccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHh-cCcee-------cCCHHhhcC--CCCEEE
Q 027577           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKE-TGAKF-------EEDLDTMLP--KCDIVV   97 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~-~g~~~-------~~~l~ell~--~aDvVv   97 (221)
                      ....+.+|+|.|.|. |.||+.+++.|...|++|++.+|+..... .... .++..       ..+++++++  .+|+|+
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence            346799999999996 99999999999999999999998543211 0111 11211       123456677  899998


Q ss_pred             EeCCC
Q 027577           98 VNTPL  102 (221)
Q Consensus        98 ~~~p~  102 (221)
                      .+...
T Consensus        94 h~A~~   98 (330)
T 2pzm_A           94 HSAAA   98 (330)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            87653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.94  E-value=0.00054  Score=60.04  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec----CCH-Hhhc----C--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL-DTML----P--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l-~ell----~--~aDvVv~~~p~  102 (221)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++++...+.++++|+..+    .++ .+.+    .  .+|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 89999987666667777776432    121 2212    1  58999988873


Q ss_pred             Chh-----h----hhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEK-----T----RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~-----t----~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ...     .    ..-.-.+.+..++++..++.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          265 EAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             TCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             ccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            210     0    00012456777888888887764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.94  E-value=0.00093  Score=54.99  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=46.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p  101 (221)
                      +|.|.|. |.||+.+++.|...  |++|++.+|++.........++..       .++++++++.+|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4789995 99999999999988  999999998764433322233321       1245678889999987765

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.92  E-value=0.0031  Score=55.45  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      -.++-|+|.|.+|+++++.++.+|++|.++|+++...            + .+-+..+|-++...|  .   ..+..  +
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~------------~-~~~fp~a~~~~~~~p--~---~~~~~--~  263 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA------------T-TARFPTADEVVVDWP--H---RYLAA--Q  263 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS------------C-TTTCSSSSEEEESCH--H---HHHHH--H
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc------------c-cccCCCceEEEeCCh--H---HHHHh--h
Confidence            4589999999999999999999999999999754211            1 122455665554444  1   11111  1


Q ss_pred             h---cCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          116 A---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       116 ~---~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .   .+.+++.+|=++++.-.|...|..+|+++...
T Consensus       264 ~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~  299 (386)
T 2we8_A          264 AEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIA  299 (386)
T ss_dssp             HHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCS
T ss_pred             ccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCC
Confidence            1   25678888888888888888888888876333

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.90  E-value=0.0019  Score=55.81  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (221)
                      .+|||+|+|.||+.+++.+... +++|.+.+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            3899999999999999998765 677666553

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.90  E-value=0.0031  Score=54.78  Aligned_cols=86  Identities=22%  Similarity=0.323  Sum_probs=55.5

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcC-CCCChhHH-------HhcCceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDR-VKMDPQLE-------KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~-~~~~~~~~-------~~~g~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      =.+||||| .|.+|+.+.+.|...- .++..+.. +.......       .+..+.. .+.+++++++|++++|+|..  
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~-~~~~~~~~~~Dvvf~alp~~--   89 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSE-FDPEKVSKNCDVLFTALPAG--   89 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBC-CCHHHHHHHCSEEEECCSTT--
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEe-CCHHHhhcCCCEEEECCCcH--
Confidence            35899998 6999999999998764 45655543 22111111       1111222 24556657899999999933  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          ...+....+ .|+.+||.|.
T Consensus        90 ----~s~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           90 ----ASYDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             ----HHHHHHTTC-CSCEEEESSS
T ss_pred             ----HHHHHHHHh-CCCEEEECCh
Confidence                334455556 7999999985

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.89  E-value=0.0025  Score=53.48  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             ccCCCCCEEEEEccC---HHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           31 AYDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G---~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ...+.||++.|.|.+   .||+++|+.|...|++|++.+++..
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            457899999999985   8999999999999999999998753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.89  E-value=0.0021  Score=55.62  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHcc-CCCeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|++|.|+| .|.+|...++.++. .|.+|++.++++...+.++++|...+    .++.+.+     ...|+|+-++.. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~-  249 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHT-  249 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCc-
Confidence            588999999 99999999999997 68999999987666667777776432    1222222     257888887751 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.    .-...++.++++..++.++
T Consensus       250 ~~----~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          250 DK----HAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             HH----HHHHHHHHSCTTCEEEECS
T ss_pred             hh----hHHHHHHHhcCCCEEEEEC
Confidence            11    2245667788888888773

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.88  E-value=0.0032  Score=54.59  Aligned_cols=91  Identities=20%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc---CCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---PKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell---~~aDvVv~~~p~~~~  105 (221)
                      .|++|.|+| .|.+|...++.++..|++|++.++ ....+.++++|...+     .++.+.+   ...|+|+-++.....
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            589999999 799999999999999999988874 445566677776432     1232222   358999998873211


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +    -...+..++++..++.++..
T Consensus       262 ~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          262 T----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             H----HGGGGBCSSSCCEEEESCCS
T ss_pred             h----hHHHHHhhcCCcEEEEeCCC
Confidence            1    13456778999999998754

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.88  E-value=0.0024  Score=56.64  Aligned_cols=67  Identities=16%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CCCCEEEEEc-----cC---HHHHHHHHHHccCCCeEEEEcCCCC--ChhHH-------HhcC--ceecCCHHhhcCCCC
Q 027577           34 LEGKTVGTVG-----CG---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETG--AKFEEDLDTMLPKCD   94 (221)
Q Consensus        34 l~g~~vgIIG-----~G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g--~~~~~~l~ell~~aD   94 (221)
                      |.|+||+|||     +|   ++.++++..+..+|++|.+..|...  .++..       ++.|  +....+++++++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            7899999997     34   4999999999999999999998643  22221       2345  355689999999999


Q ss_pred             EEEEeC
Q 027577           95 IVVVNT  100 (221)
Q Consensus        95 vVv~~~  100 (221)
                      +|..-+
T Consensus       266 VVytd~  271 (418)
T 2yfk_A          266 VVYPKS  271 (418)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            999854

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.87  E-value=0.0027  Score=54.41  Aligned_cols=88  Identities=18%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCEEEEE-ccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCCCC
Q 027577           36 GKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPLT  103 (221)
Q Consensus        36 g~~vgII-G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p~~  103 (221)
                      +++|.|. |.|.+|...++.++..|++|++.+++....+.++++|...+     .++.+.+      ...|+|+-++.. 
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-  243 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-  243 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence            3677666 89999999999999999999999987767777777776422     2222222      269999988861 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.    + ...+..++++..++.++.
T Consensus       244 ~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          244 PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             hh----H-HHHHhhhcCCCEEEEEec
Confidence            11    2 557788999999999873

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.85  E-value=0.0009  Score=53.19  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc-----Ccee-cCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKF-EEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~-~~~l~ell~~aDvVv~~~p~~  103 (221)
                      |+|.|.| .|.||+.+++.|.+.|++|++.+|+....+.....     .+.. .+++.++++++|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            5799999 79999999999999999999999875322111110     1111 124566788999999888644

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.84  E-value=0.00097  Score=55.16  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HH--hcCceecCCHHhhcCC-CCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EK--ETGAKFEEDLDTMLPK-CDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~--~~g~~~~~~l~ell~~-aDvVv~~~p  101 (221)
                      ++++|.|.|.|.||+.+++.|...|++|++.+|+...... ..  ...+....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            3679999999999999999999999999999987533110 00  0011111234456665 999987763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.83  E-value=0.0015  Score=57.90  Aligned_cols=66  Identities=20%  Similarity=0.293  Sum_probs=46.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC--ceecCC---HHhhcCCCCEEEE
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEED---LDTMLPKCDIVVV   98 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~~~~---l~ell~~aDvVv~   98 (221)
                      -+.|+||+|+|-|.+|+.+++.++.+|++|+++|+.+..+.......  +..+.+   +.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999997654432211100  111122   3445567888875

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.82  E-value=0.0016  Score=56.17  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhc-Ccee-----c---CCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET-GAKF-----E---EDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~-g~~~-----~---~~l~ell~~aDvVv~~~p~  102 (221)
                      .+++|.|.| .|.+|+.+++.|...|++|++.+|+....  +..... ++..     .   +++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            468899999 59999999999998999999999876443  112211 2221     1   1255678899999977653


Q ss_pred             ChhhhhcchHHHHhcCCC-C--CEEEEcCCCC
Q 027577          103 TEKTRGMFDKDRIAKMKK-G--VLIVNNARGA  131 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~-g--a~lIn~srg~  131 (221)
                      ............++.++. +  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111122333333322 3  4788877653

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.82  E-value=0.0037  Score=53.41  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=62.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHcc---CCCeEEEEcCCCCChhHHH---hcC--ceec----CCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKP---FNCNLLYHDRVKMDPQLEK---ETG--AKFE----EDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~---~~g--~~~~----~~l~ell~~aDvVv~~~p~~  103 (221)
                      +||+||| .|.+|..++..|..   +..++..+|..+.....+.   ...  ....    .+..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            5899999 89999999998864   4457999998652111111   111  1111    24567889999999987532


Q ss_pred             hh-----------hhhcchH--HHHhcCCCCCEEEEcCCCCccCHHHHH
Q 027577          104 EK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVV  139 (221)
Q Consensus       104 ~~-----------t~~~i~~--~~~~~mk~ga~lIn~srg~~vd~~al~  139 (221)
                      ..           +..++..  +.+....|++++++++  .++|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            11           1111110  1233346889999995  666655544

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.81  E-value=0.0028  Score=54.35  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCC----CCChh-----HHHh-c----CceecCCHHhhcCCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRV----KMDPQ-----LEKE-T----GAKFEEDLDTMLPKC   93 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~----~~~~~-----~~~~-~----g~~~~~~l~ell~~a   93 (221)
                      .+||+|+|. |.+|..++..|...|+       +|..+|+.    ....+     .... .    .+....++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       79999986    21111     1110 0    122236788999999


Q ss_pred             CEEEEeCC
Q 027577           94 DIVVVNTP  101 (221)
Q Consensus        94 DvVv~~~p  101 (221)
                      |+|+++..
T Consensus        85 D~Vi~~ag   92 (329)
T 1b8p_A           85 DVALLVGA   92 (329)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99998865

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.81  E-value=0.0023  Score=54.47  Aligned_cols=68  Identities=22%  Similarity=0.237  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC-hhHH------HhcCceec-------CCHHhhcC--CCCEE
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLE------KETGAKFE-------EDLDTMLP--KCDIV   96 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~------~~~g~~~~-------~~l~ell~--~aDvV   96 (221)
                      ...++|.|.|. |.+|+.+++.|...|++|++.+|+... .+..      ...++..+       +++.++++  .+|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            34679999997 999999999999999999999986522 1111      12233221       23456677  88888


Q ss_pred             EEeCC
Q 027577           97 VVNTP  101 (221)
Q Consensus        97 v~~~p  101 (221)
                      +.+..
T Consensus        88 i~~a~   92 (346)
T 3i6i_A           88 VSTVG   92 (346)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            77765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.81  E-value=0.0021  Score=55.42  Aligned_cols=90  Identities=19%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcC--c-ee-c-----CCHHh----hc--CCCCEEEE
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG--A-KF-E-----EDLDT----ML--PKCDIVVV   98 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g--~-~~-~-----~~l~e----ll--~~aDvVv~   98 (221)
                      .|++|.|+|.|.+|...++.++.+|.+ |++.++++...+.++++.  + .. .     .++.+    +.  ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            488999999999999999999999997 999988765556555552  1 11 1     11111    11  25899999


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ++.. +.    .-...+..++++..++.++-
T Consensus       259 ~~g~-~~----~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          259 CTGV-ES----SIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCC-HH----HHHHHHHHSCTTCEEEECCC
T ss_pred             CCCC-hH----HHHHHHHHhcCCCEEEEEcc
Confidence            8862 21    12456778999999998874

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.81  E-value=0.007  Score=54.16  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEE-Ec-------CCCC-Chh---HH---------------HhcCceec
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HD-------RVKM-DPQ---LE---------------KETGAKFE   83 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d-------~~~~-~~~---~~---------------~~~g~~~~   83 (221)
                      +.++.|+||.|.|+|++|..+|+.|...|.+|++ .|       +... ..+   ..               ..++.+.+
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            3578999999999999999999999999999875 44       3222 111   00               00122322


Q ss_pred             CCHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCC-CCCEEEEcCCCCccCHHHHHHHHHhC-Cce
Q 027577           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAVVDACSSG-HIA  148 (221)
Q Consensus        84 ~~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk-~ga~lIn~srg~~vd~~al~~al~~g-~i~  148 (221)
                      + .++++ -.||+++-|..     .+.|+.+....++ .|+.+|--+.-..+..++- +.|.+. .+.
T Consensus       305 ~-~~e~~~~~~Dil~P~A~-----~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~-~~l~~~~Gi~  365 (449)
T 1bgv_A          305 P-GEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL-RFLMQQPNMV  365 (449)
T ss_dssp             E-TCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH-HHHHHCTTCE
T ss_pred             C-chhhhcCCcceeecccc-----ccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH-HHHHHcCCEE
Confidence            1 22233 47998887763     3456555555554 3444554444444566664 556666 665

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.81  E-value=0.0038  Score=51.12  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcc-CH--HHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            588999999996 55  99999999999999999998864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.79  E-value=0.0012  Score=55.83  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh--c-----CCCCEEEEeCCCChhhh
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM--L-----PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el--l-----~~aDvVv~~~p~~~~t~  107 (221)
                      |+ |.|+|. |.+|...++.++..|++|++.++++.+.+.++++|...+-+..+.  +     ...|+++-++. .+   
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g-~~---  222 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG-DK---  222 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC-HH---
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC-cH---
Confidence            45 999998 999999999999999999999988777777888886532122211  1     24678877765 11   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .-...++.++++..++.++.
T Consensus       223 --~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhcCCEEEEEec
Confidence              33456778888888888864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.79  E-value=0.0012  Score=56.65  Aligned_cols=90  Identities=19%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             CCCEEEEEccC-HHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceec-----CC----HHhhc--CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCG-RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE-----ED----LDTML--PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G-~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~-----~~----l~ell--~~aDvVv~~~p  101 (221)
                      .|++|.|+|.| .||..+++.++.. |++|++.++++...+.+++.|....     .+    +.++.  ...|+|+.++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            48899999998 9999999999998 9999999987655555556664321     11    22333  35788888876


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....     ....+..++++..++.++.
T Consensus       250 ~~~~-----~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          250 SEKT-----LSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CHHH-----HTTGGGGEEEEEEEEECCS
T ss_pred             CHHH-----HHHHHHHHhcCCEEEEECC
Confidence            2211     1234567788888888764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.79  E-value=0.001  Score=57.47  Aligned_cols=87  Identities=13%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccC---CCeEEEEc-CCCCChh-HHHhcCceecCCH-HhhcCCCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPF---NCNLLYHD-RVKMDPQ-LEKETGAKFEEDL-DTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~---G~~V~~~d-~~~~~~~-~~~~~g~~~~~~l-~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      ++|+|+| .|.+|+.+.+.|...   .+++.++. ++..... ......+.. .++ .+.++.+|+|+.|+|... +.. 
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~-~~~~~~~~~~vDvVf~a~g~~~-s~~-   80 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRV-QNVEEFDWSQVHIALFSAGGEL-SAK-   80 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEE-EEGGGCCGGGCSEEEECSCHHH-HHH-
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEE-ecCChHHhcCCCEEEECCCchH-HHH-
Confidence            5899999 999999999998765   34666554 3221110 010011111 111 123467999999998322 111 


Q ss_pred             chHHHHhcCCCCCEEEEcCC
Q 027577          110 FDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +..   ..++.|+.+|+.+.
T Consensus        81 ~a~---~~~~~G~~vId~s~   97 (336)
T 2r00_A           81 WAP---IAAEAGVVVIDNTS   97 (336)
T ss_dssp             HHH---HHHHTTCEEEECSS
T ss_pred             HHH---HHHHcCCEEEEcCC
Confidence            111   22356788888764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.79  E-value=0.0059  Score=54.41  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEccC----------HHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCC
Q 027577           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        33 ~l~g~~vgIIG~G----------~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .+.|++|+|+|+-          +-...+++.|... |.+|.+|||.....        ....++++.++.+|+|+++++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~  383 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD  383 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence            4789999999964          2478899999998 99999999864321        134678899999999999997


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEc
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      -. +.+. ++.+.+..|+ +.+|+|.
T Consensus       384 ~~-~f~~-~d~~~~~~~~-~~~i~D~  406 (431)
T 3ojo_A          384 HS-EFKN-LSDSHFDKMK-HKVIFDT  406 (431)
T ss_dssp             CG-GGTS-CCGGGGTTCS-SCEEEES
T ss_pred             CH-HHhc-cCHHHHHhCC-CCEEEEC
Confidence            33 3332 2333345666 6788886

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.78  E-value=0.0036  Score=52.78  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p  101 (221)
                      .++|.|.| .|.||+.+++.|...|++|++.+|+....+.....++..       .++++++++.+|+|+.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            36899999 599999999999999999999998764433222223321       1235577889999988765

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.78  E-value=0.0054  Score=51.38  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=48.0

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC-ChhHH---HhcCceec-------CCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLE---KETGAKFE-------EDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~---~~~g~~~~-------~~l~ell~~aDvVv~~~p  101 (221)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+.. .....   ...++..+       +++.++++.+|+|+.+.+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 499999999999999999999998763 22211   22344321       245677888999988776

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.76  E-value=0.0019  Score=55.76  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-------------------hhHH----Hhc--Cc--eec
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQLE----KET--GA--KFE   83 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-------------------~~~~----~~~--g~--~~~   83 (221)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|.....                   .+.+    .+.  ++  ...
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            36889999999999999999999999997 58888864311                   1111    111  11  111


Q ss_pred             C---------------------CHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           84 E---------------------DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        84 ~---------------------~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .                     ++.++++++|+|+.|+- +.+++..++.....   .+..+|+.+
T Consensus       110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence            1                     23567888999988874 66788777765543   355677764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.76  E-value=0.0029  Score=52.54  Aligned_cols=67  Identities=18%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC-CC--h-hH------HHhcCceec-------CCHHhhcCCCCEEE
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--P-QL------EKETGAKFE-------EDLDTMLPKCDIVV   97 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~-~~--~-~~------~~~~g~~~~-------~~l~ell~~aDvVv   97 (221)
                      +++|.|.|. |.+|+.+++.|...|++|.+.+|+. ..  . +.      ....++..+       +++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999995 9999999999998899999999864 11  1 11      112344321       23556778899998


Q ss_pred             EeCCC
Q 027577           98 VNTPL  102 (221)
Q Consensus        98 ~~~p~  102 (221)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            87763

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.76  E-value=0.0021  Score=57.48  Aligned_cols=108  Identities=17%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc----------CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP----------FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~  102 (221)
                      -.+|||||+|.||+.+++.+..          .+.+|. ++|++....... ..+...+.+++++++  +.|+|+.++|.
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence            3589999999999999887653          355654 456643222211 123455678999986  58999999984


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      ......    -....|+.|..++..-.+-.. ..+.|.++.++.+..
T Consensus        89 ~~~h~~----~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           89 LEPARE----LVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             STTHHH----HHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHH----HHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            221111    123556778888866442222 235677777776665

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.76  E-value=0.0014  Score=56.39  Aligned_cols=89  Identities=12%  Similarity=0.060  Sum_probs=62.0

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVv~~~p~  102 (221)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+.++++|....     .+..    +..  ...|+++.++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            589999999 7999999999999999999999987654555555554321     1111    122  247888887762


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       +     .....+..|+++..++.++.
T Consensus       242 -~-----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          242 -S-----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             -G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             -h-----HHHHHHHhccCCCEEEEEec
Confidence             1     12345677888888888764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.76  E-value=0.0015  Score=57.09  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecC----C-HHhhc------CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE----D-LDTML------PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~----~-l~ell------~~aDvVv~~~p~  102 (221)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..++    + +.+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 699999876666777777865321    1 22222      247888888763


Q ss_pred             Chhh----------hhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKT----------RGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t----------~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....          ..-.-.+.+..++++..++.++-
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            2100          00012355677788888877763

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.75  E-value=0.0012  Score=56.73  Aligned_cols=90  Identities=16%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---CCHHhhc------CCCCEEEEeCCCCh
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTML------PKCDIVVVNTPLTE  104 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l~ell------~~aDvVv~~~p~~~  104 (221)
                      .|++|.|+| .|.+|...++.++..|++|++. .++...+.++++|...+   .++.+.+      ...|+|+-++.. +
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            589999999 7999999999999999999988 55545556666676542   1222222      257888887762 1


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                           .....+..|+++..++.++-..
T Consensus       228 -----~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          228 -----VLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             -----HHHHHHHHEEEEEEEEESCCCS
T ss_pred             -----HHHHHHHHHhcCCeEEEEcccC
Confidence                 2234566778888888775433

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.75  E-value=0.0012  Score=56.02  Aligned_cols=89  Identities=17%  Similarity=0.125  Sum_probs=58.9

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDvVv~~~p~  102 (221)
                      .|++|.|+| .|.||..+++.++..|++|++.++++...+.+++.|....     .+..+    ..  ...|+|+.++. 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            489999999 7999999999999999999999986544445555554211     11111    11  13677777765 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ..    .....+..|+++..++.++.
T Consensus       219 -~~----~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          219 -RD----TWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             -GG----GHHHHHHTEEEEEEEEECCC
T ss_pred             -hH----HHHHHHHHhcCCCEEEEEec
Confidence             11    22445666777777777653

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.75  E-value=0.0077  Score=53.08  Aligned_cols=68  Identities=16%  Similarity=0.318  Sum_probs=52.4

Q ss_pred             CCCCCEEEEEcc-----C---HHHHHHHHHHccCCCeEEEEcCCCC--ChhHH-------HhcCc--eecCCHHhhcCCC
Q 027577           33 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKC   93 (221)
Q Consensus        33 ~l~g~~vgIIG~-----G---~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g~--~~~~~l~ell~~a   93 (221)
                      .|.|+||+|+|-     |   ++.++++..+..+|++|.+..|...  .++..       +..|.  ....+++++++++
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a  267 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA  267 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence            378999999973     4   7999999999999999999988632  22222       23353  4568999999999


Q ss_pred             CEEEEeC
Q 027577           94 DIVVVNT  100 (221)
Q Consensus        94 DvVv~~~  100 (221)
                      |+|..-+
T Consensus       268 DvVytd~  274 (399)
T 3q98_A          268 DIVYPKS  274 (399)
T ss_dssp             SEEEECC
T ss_pred             CEEEecC
Confidence            9998754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.75  E-value=0.002  Score=53.05  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC--CCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~  102 (221)
                      |+|.|.|. |.||+.+++.|...  |++|.+.+|+..........++..       .++++++++.+|+|+.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57889996 99999999999988  999999998764433322233321       12456778899999877653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.75  E-value=0.0012  Score=56.54  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCCCChhHHHhcCceec----CCHHh----hc--CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----ML--PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll--~~aDvVv~~~p~~  103 (221)
                      .|.+|.|+|.|.+|...++.++.. |.+|++.++++...+.++++|+..+    .++.+    +.  ...|+|+-++.. 
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~-  249 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGA-  249 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCC-
Confidence            588999999999999999999887 7899999987766677777776432    12222    11  157888888762 


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +.    .-...+..++++..++.++-
T Consensus       250 ~~----~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          250 QS----TIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HH----HHHHHHHHEEEEEEEEECSC
T ss_pred             HH----HHHHHHHHHhcCCEEEEECC
Confidence            21    22345667788888887753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.74  E-value=0.0016  Score=58.04  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCCCCEEEEeCCC---Chh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTPL---TEK  105 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDvVv~~~p~---~~~  105 (221)
                      ++.+|+|.|||+|..|.+.|+.|...|++|.++|.+....  .... .|+...  ....+.++.+|.|++....   .|.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            3678999999999999999999999999999999765332  2233 465432  1124556689999887432   232


Q ss_pred             hhh-------cchH-HHH-hcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          106 TRG-------MFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       106 t~~-------~i~~-~~~-~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      ...       ++.+ +.+ ..++...+-|--+.|+--...-+...|+..
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            211       2221 122 224434455655677766555566666654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.74  E-value=0.0044  Score=51.83  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999994 8899999999999999999998865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.74  E-value=0.0043  Score=52.28  Aligned_cols=107  Identities=10%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCCh---------
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE---------  104 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~---------  104 (221)
                      +.|++|.++|........++.|...|++|........   .....|.....++.+.++++|+|+...|...         
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL---DHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS---SCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc---ccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            6789999999999999999999999999987753211   1112344445567778889999987444221         


Q ss_pred             -hhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       105 -~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                       .+...++++.++.++++.+|+ +   + +|..++.+++.+.++.
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             ccCCccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence             122236788889999988887 2   2 2667766777777776

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.74  E-value=0.00088  Score=59.83  Aligned_cols=88  Identities=19%  Similarity=0.143  Sum_probs=64.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC---C-----------------------HH
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE---D-----------------------LD   87 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~---~-----------------------l~   87 (221)
                      .|.+|.|+|. |.+|...++.++..|++|++.++++...+.++++|+..+-   +                       +.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~  307 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIR  307 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHH
Confidence            5899999998 9999999999999999999888766566677777764321   1                       11


Q ss_pred             hhc--CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        88 ell--~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ++.  ...|+|+-++.. +     .-...+..++++..++.++
T Consensus       308 ~~t~g~g~Dvvid~~G~-~-----~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          308 ELTGGEDIDIVFEHPGR-E-----TFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHTSCCEEEEEECSCH-H-----HHHHHHHHEEEEEEEEESC
T ss_pred             HHhCCCCCcEEEEcCCc-h-----hHHHHHHHhhCCcEEEEEe
Confidence            112  368999988862 1     2244566788888888876

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.73  E-value=0.0047  Score=53.14  Aligned_cols=89  Identities=17%  Similarity=0.077  Sum_probs=62.2

Q ss_pred             CC-CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC----hhHHHhcCceecCC--------HHhhc--------CC
Q 027577           35 EG-KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEED--------LDTML--------PK   92 (221)
Q Consensus        35 ~g-~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~--------l~ell--------~~   92 (221)
                      .| .+|.|+|. |.+|...++.++.+|++|++..++...    .+.++++|+..+-+        +.+.+        ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            47 89999998 999999999999999998888755443    34556677643211        11111        25


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +|+|+-++.. +.    .. ..+..++++..++.++.
T Consensus       246 ~Dvvid~~G~-~~----~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          246 AKLALNCVGG-KS----ST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             EEEEEESSCH-HH----HH-HHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCc-hh----HH-HHHHHhccCCEEEEecC
Confidence            8999988861 11    12 45788899988888764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.72  E-value=0.0035  Score=52.09  Aligned_cols=66  Identities=17%  Similarity=0.056  Sum_probs=48.8

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCC-CeEEEEcCCCCChh--HHHhcCceec-------CCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ--LEKETGAKFE-------EDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~--~~~~~g~~~~-------~~l~ell~~aDvVv~~~p  101 (221)
                      .|+|.|.|. |.+|+.+++.|.+.| ++|.+.+|++....  .....++..+       ++++++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            579999996 999999999998888 99999998764431  1222344321       245567889999998875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.71  E-value=0.0016  Score=55.35  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             EEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---CCH-Hhhc-----CCCCEEEEeCCCChhhh
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL-DTML-----PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDvVv~~~p~~~~t~  107 (221)
                      +|.|+|. |.+|...++.++..|++|++.++++...+.++++|...+   .+. .+.+     ...|+|+-++.. +   
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-~---  227 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-R---  227 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-T---
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-H---
Confidence            7999997 999999999999999999999988777777777775421   111 1111     236788777752 1   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .-...+..++++..++.++.
T Consensus       228 --~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          228 --TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             --THHHHHHTEEEEEEEEECSC
T ss_pred             --HHHHHHHhhccCCEEEEEee
Confidence              12355677788777777753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.71  E-value=0.0022  Score=54.00  Aligned_cols=69  Identities=13%  Similarity=0.063  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------cCcee--------cCCHHhhcCCCCEE
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------TGAKF--------EEDLDTMLPKCDIV   96 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~g~~~--------~~~l~ell~~aDvV   96 (221)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.+|+....+....       .++..        ..+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467999999996 999999999999999999999986422211110       12211        13455677789999


Q ss_pred             EEeCC
Q 027577           97 VVNTP  101 (221)
Q Consensus        97 v~~~p  101 (221)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            88764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.71  E-value=0.005  Score=53.33  Aligned_cols=89  Identities=13%  Similarity=0.013  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~  102 (221)
                      -.|.+|.|+|. |.+|...++.++..|++|++.. ++.+.+.++++|+..+     .++.+.+     ...|+|+-++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            46899999999 8999999999999999988875 4556677778876422     1222222     238999888762


Q ss_pred             ChhhhhcchHHHHhcC-CCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKM-KKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~m-k~ga~lIn~s  128 (221)
                       +.+    -...+..+ +++..++.++
T Consensus       242 -~~~----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          242 -VES----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             -HHH----HHHHHHHSCTTCEEEEESS
T ss_pred             -hHH----HHHHHHHhhcCCCEEEEEe
Confidence             211    23455667 5788888775

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.70  E-value=0.0079  Score=49.55  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      ++|+|+|+ |.||+.+++.+... ++++. ++|+.               +++++++. .+|+|+-+++  |+.   ...
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~--p~a---~~~   60 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH--PDV---VMG   60 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC--TTT---HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC--hHH---HHH
Confidence            48999996 99999999998755 88876 45552               24555553 7899986654  221   111


Q ss_pred             HHHhcCCCCCEEEEcCCC
Q 027577          113 DRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg  130 (221)
                      -....++.|.-+|-.+.|
T Consensus        61 ~~~~a~~~g~~~VigTTG   78 (245)
T 1p9l_A           61 NLEFLIDNGIHAVVGTTG   78 (245)
T ss_dssp             HHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHcCCCEEEcCCC
Confidence            122234556666665566

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.69  E-value=0.004  Score=53.90  Aligned_cols=87  Identities=17%  Similarity=0.296  Sum_probs=51.2

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEc--CCCCChhHHHh-------------cCceec-CCHHhhcCCCCEEEE
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHD--RVKMDPQLEKE-------------TGAKFE-EDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d--~~~~~~~~~~~-------------~g~~~~-~~l~ell~~aDvVv~   98 (221)
                      .+|||+| .|.+|+.+++.|.... +++.++.  ++.........             ...... .+.++ ++++|+|++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            5899999 8999999999997653 5666663  21111111110             111111 13444 478999999


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      |+|... +.. +..   ..++.|+.+|+.+.
T Consensus        84 atp~~~-s~~-~a~---~~~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNEL-AES-IEL---ELVKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHHH-HHH-HHH---HHHHTTCEEEECSS
T ss_pred             CCChHH-HHH-HHH---HHHHCCCEEEECCc
Confidence            998321 111 222   22456888998874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.68  E-value=0.0022  Score=54.34  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=46.2

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ...+.+|+|.|.|. |.||+.+++.|...|++|++.+++...... .....+....+++++++.+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45788999999996 999999999999999999999987533100 0000111123456778899999877653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.67  E-value=0.0018  Score=54.99  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             EEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh----c-----CCCCEEEEeCCCChhhh
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM----L-----PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el----l-----~~aDvVv~~~p~~~~t~  107 (221)
                      +|.|+|. |.+|...++.++..|++|++.++++...+.++++|...+-+..+.    +     ...|+|+-++.. +   
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~-~---  228 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-K---  228 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-H---
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH-H---
Confidence            7999997 999999999999999999999988777777777776432222211    1     246888888762 2   


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        .-.+.+..++++..++.++-
T Consensus       229 --~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          229 --QLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             --HHHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHhhcCCCEEEEEec
Confidence              12456778888888888764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.67  E-value=0.0025  Score=52.74  Aligned_cols=38  Identities=21%  Similarity=0.058  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997   69999999999999999999998754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.67  E-value=0.002  Score=55.10  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVv~~~p~  102 (221)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.+++.|...+     .++.    ++.  ...|+|+.++. 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5899999998 999999999999999999999986544455555554211     1111    111  24677776665 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+     .....+..|+++..++.++.
T Consensus       245 ~~-----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          245 AL-----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             SS-----SHHHHHHHEEEEEEEEESSC
T ss_pred             HH-----HHHHHHHhhccCCEEEEEec
Confidence            21     12345556666666666653

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.66  E-value=0.0021  Score=55.40  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=25.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---CCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d~   67 (221)
                      .+|||+|+|.||+.+.+.|...   .++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999998654   478776643

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.66  E-value=0.0011  Score=52.67  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++....... .++.       ..++++++++.+|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 599999999999999999999998753221110 1121       1134567888999999887543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.65  E-value=0.0033  Score=53.60  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p  101 (221)
                      ..|++|.|+|.|.+|...++.++.+|.+ +++.++++.+.+.++++|...+     .+..+..      ...|+|+-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            4589999999999999999999999987 5678887666677788886432     2222222      34788887775


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .+.+    -...++.++++..++.++-
T Consensus       239 -~~~~----~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          239 -VPQT----VELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             -SHHH----HHHHHHHCCTTCEEEECCC
T ss_pred             -ccch----hhhhhheecCCeEEEEEec
Confidence             2222    2345678899999888764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.65  E-value=0.004  Score=52.82  Aligned_cols=70  Identities=23%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHH---h-------cCcee-------cCCHHhhcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEK---E-------TGAKF-------EEDLDTMLPKC   93 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~---~-------~g~~~-------~~~l~ell~~a   93 (221)
                      .+.+|+|.|.| .|.||+.+++.|...|++|++.+|+..... ...   .       .++..       .++++++++.+
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            46789999999 599999999999999999999998653321 111   1       12221       12356778899


Q ss_pred             CEEEEeCCC
Q 027577           94 DIVVVNTPL  102 (221)
Q Consensus        94 DvVv~~~p~  102 (221)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999887753

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.65  E-value=0.014  Score=52.24  Aligned_cols=135  Identities=12%  Similarity=0.106  Sum_probs=88.4

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC---eEEEEcCCC----CChhH------------HHhcCceecCCHHhhcC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK----MDPQL------------EKETGAKFEEDLDTMLP   91 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~---~V~~~d~~~----~~~~~------------~~~~g~~~~~~l~ell~   91 (221)
                      +..|...||.|.|.|..|..+|+.+...|.   +++.+|+..    ...+.            ++..+-....+|.|+++
T Consensus       214 gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~  293 (487)
T 3nv9_A          214 KKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV  293 (487)
T ss_dssp             TCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHT
T ss_pred             CCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHh
Confidence            567889999999999999999999999998   699999863    11111            11111112358999999


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n  171 (221)
                      .+|+++=+..  . ..+.+.++.++.|.+..+|.-.|.-..  |-.=.++.+.|... .+.=   ..+.|     =+..|
T Consensus       294 ~adVlIG~S~--~-~pg~ft~e~V~~Ma~~PIIFaLSNPtp--Ei~pe~A~~~G~aI-vATG---rsd~P-----nQ~NN  359 (487)
T 3nv9_A          294 GADVLISLST--P-GPGVVKAEWIKSMGEKPIVFCCANPVP--EIYPYEAKEAGAYI-VATG---RGDFP-----NQVNN  359 (487)
T ss_dssp             TCSEEEECCC--S-SCCCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHHTTCSE-EEES---CTTSS-----SBCCG
T ss_pred             cCCEEEEecc--c-CCCCCCHHHHHhhcCCCEEEECCCCCc--cCCHHHHHHhCCEE-EEEC---CCCCc-----ccCcc
Confidence            9997764431  1 136899999999999999999887654  21112233356533 2221   11111     24567


Q ss_pred             eEECCCCC
Q 027577          172 QAMTPHVS  179 (221)
Q Consensus       172 ~~~tPH~a  179 (221)
                      +++-|-++
T Consensus       360 ~liFPGI~  367 (487)
T 3nv9_A          360 SVGFPGIL  367 (487)
T ss_dssp             GGTHHHHH
T ss_pred             eeEcchhh
Confidence            88777664

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.64  E-value=0.0015  Score=56.27  Aligned_cols=88  Identities=14%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hcC--CCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLP--KCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll~--~aDvVv~~~p~  102 (221)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.+++.|....     .+..+    ...  ..|+|+.++..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            4889999997 999999999999999999999987544455555554311     11111    111  46777666541


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                        .   .+ ...+..++++..++.++
T Consensus       250 --~---~~-~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          250 --V---NL-SKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             --H---HH-HHHHHHEEEEEEEEECC
T ss_pred             --H---HH-HHHHHhccCCCEEEEEe
Confidence              1   11 33456666666666665

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.62  E-value=0.003  Score=52.54  Aligned_cols=67  Identities=16%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC---hhHH------HhcCceec-------CCHHhhcCCCCEEEE
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD---PQLE------KETGAKFE-------EDLDTMLPKCDIVVV   98 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~---~~~~------~~~g~~~~-------~~l~ell~~aDvVv~   98 (221)
                      .++|.|.|. |.+|+.+++.|...|++|++.+|+...   .+..      ...++..+       +++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999995 999999999999999999999986432   1111      12344321       235667889999998


Q ss_pred             eCCC
Q 027577           99 NTPL  102 (221)
Q Consensus        99 ~~p~  102 (221)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            8763

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=96.61  E-value=0.0064  Score=54.56  Aligned_cols=106  Identities=12%  Similarity=0.181  Sum_probs=72.0

Q ss_pred             CCCCEEEEEccC----HHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           34 LEGKTVGTVGCG----RIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        34 l~g~~vgIIG~G----~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++-++|+|||.+    ++|+.+++.++..| ..|+.+++...  +   -.|+..+.+++++-...|++++++|. +....
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~--~---i~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~   79 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEE--E---VQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKD   79 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCS--E---ETTEECBSSTTSCSSCCSEEEECSCH-HHHHH
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCC--e---ECCEeccCCHHHcCCCCCEEEEecCH-HHHHH
Confidence            567899999987    89999999999885 77888887532  1   24777778899988889999999992 23333


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCC--ccC-----HHHHHHHHHhCCce
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGA--IMD-----TQAVVDACSSGHIA  148 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~--~vd-----~~al~~al~~g~i~  148 (221)
                      ++. +..+. .-. .+|..+.|=  .-+     ++.+.+..++..+.
T Consensus        80 ~v~-e~~~~-Gi~-~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           80 TLI-QCGEK-GVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHH-HHHHH-TCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-HHHHc-CCC-EEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            333 22221 222 344444432  223     66788888776666

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.60  E-value=0.0017  Score=55.34  Aligned_cols=46  Identities=11%  Similarity=0.249  Sum_probs=37.0

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.+++.|.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~  191 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC  191 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            4889999995 999999999999999999999986544444444443

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.59  E-value=0.0064  Score=55.42  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             CCCCEEEEEccCHHHHH-HHHHHccCCCeEEEEcCCCCC--hhHHHhcCceec--CCHHhhcCCCCEEEEeC--C-CChh
Q 027577           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEK  105 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~-iA~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~--~~l~ell~~aDvVv~~~--p-~~~~  105 (221)
                      ..+++|-|||.|.+|.+ +|+.|+..|++|.++|.....  .+.+++.|+...  .+.+.+..++|+||..-  | .+|.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            56899999999999997 799999999999999986432  234556677643  24455557899998863  3 2332


Q ss_pred             hh-------hcch-HHHHhc--CCC-CCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          106 TR-------GMFD-KDRIAK--MKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       106 t~-------~~i~-~~~~~~--mk~-ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      ..       .++. .+.+..  ++. ..+-|.-+.|+--...-+...|+...
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            21       1232 233333  332 24556666788777777777777654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.59  E-value=0.011  Score=50.92  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCC----hhHHHhcCceecCC--------HHhhcC---CCCEEEE
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEED--------LDTMLP---KCDIVVV   98 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~--------l~ell~---~aDvVv~   98 (221)
                      .|.+|.|+|. |.+|...++.++.+|+++++...+...    .+.++++|...+-+        +.++..   ..|+|+-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            5889999998 999999999999999987766543322    24556677643211        222332   3799988


Q ss_pred             eCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        99 ~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ++. .+.+     .+.+..++++..++.++
T Consensus       247 ~~g-~~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVG-GKSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSC-HHHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCC-cHHH-----HHHHHhhCCCCEEEEEe
Confidence            876 2221     24678889998888875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.58  E-value=0.0057  Score=50.54  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             ccCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCC
Q 027577           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +..+.||++.|.|. |.||+.+|+.|...|++|++.+++
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            34689999999994 789999999999999999999876

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.57  E-value=0.0021  Score=55.26  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             CC--CEEEEEcc-CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc----C-CCCEEEEe
Q 027577           35 EG--KTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML----P-KCDIVVVN   99 (221)
Q Consensus        35 ~g--~~vgIIG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell----~-~aDvVv~~   99 (221)
                      .|  ++|.|.|. |.||..+++.++..|+ +|++.+++....+.+.+ +|....     .+..+.+    . ..|+++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            36  89999998 9999999999999999 99999986544444444 554321     1222222    1 36777777


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +..      -.....+..++++..++.++.
T Consensus       238 ~G~------~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          238 VGG------NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             CCH------HHHHHHHHTEEEEEEEEECCC
T ss_pred             CCH------HHHHHHHHHhccCcEEEEECC
Confidence            651      122455667777777777654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.57  E-value=0.0034  Score=52.59  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             cCCCCCEEEEEcc-CH--HHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999997 45  99999999999999999998863

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.57  E-value=0.023  Score=47.20  Aligned_cols=67  Identities=24%  Similarity=0.210  Sum_probs=47.6

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCC--hhHH------HhcCceec-------CCHHhhcCCCCEEEEe
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLE------KETGAKFE-------EDLDTMLPKCDIVVVN   99 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~------~~~g~~~~-------~~l~ell~~aDvVv~~   99 (221)
                      .++|.|.| .|.+|+.+++.|...|++|.+.+|+...  .+..      ...++..+       +++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            47899999 5999999999999999999999987432  1111      12243321       2456678889998887


Q ss_pred             CCC
Q 027577          100 TPL  102 (221)
Q Consensus       100 ~p~  102 (221)
                      ...
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            763

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.56  E-value=0.0043  Score=51.83  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      +++|.|.| .|.||+.+++.|...|++|++.+|++...+ ...     ..+. .+++.++++.+|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47999999 699999999999999999999998743222 211     1122 23466788999999887653

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.56  E-value=0.0067  Score=52.32  Aligned_cols=69  Identities=20%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p  101 (221)
                      ...+|+|.|.|. |.||+.+++.|...|++|++.+|+..........++..       .++++++++.+|+|+.+..
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            346789999996 99999999999999999999998653322111112221       1235677889999987765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.54  E-value=0.0032  Score=53.29  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      ..|.+++|.|||+|.+|..+++.|...|. ++.++|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999998886 688888653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.54  E-value=0.018  Score=47.66  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=34.0

Q ss_pred             ccCCCCCEEEEEcc-CH--HHHHHHHHHccCCCeEEEEcCCC
Q 027577           31 AYDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        31 ~~~l~g~~vgIIG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +..+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            45789999999995 45  99999999999999999999865

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.53  E-value=0.0047  Score=53.02  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-------CCeEEE-EcCCCC------Chh----HHHhcC-ce--ecCCHHhhcC--CC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-------NCNLLY-HDRVKM------DPQ----LEKETG-AK--FEEDLDTMLP--KC   93 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-------G~~V~~-~d~~~~------~~~----~~~~~g-~~--~~~~l~ell~--~a   93 (221)
                      .+|+|+|+|.||+.+++.+...       +.+|.+ .|++..      ..+    .....+ +.  .+ +.++++.  +.
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~~~i   83 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMGEAA   83 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTTSCC
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcCCCC
Confidence            4799999999999999998653       455544 455431      011    112223 21  12 5677774  58


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~v-d~~al~~al~~g~i~  148 (221)
                      |+|+.|+|..... +..-+.....|+.|..+|....+.+. .-+.|.++.++.+..
T Consensus        84 DvVVe~T~~~~~~-~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~  138 (325)
T 3ing_A           84 DLLVDCTPASRDG-VREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKY  138 (325)
T ss_dssp             SEEEECCCCCSSS-HHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEECCCCcccc-chHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCe
Confidence            9999999843110 11112345567789999987665442 344566666665554

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.52  E-value=0.013  Score=51.02  Aligned_cols=97  Identities=11%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             cCCCCCEEEEEcc--CHHHHHHHHHHccCCCeEEEEcCCCC-C-hh-------HHHhcC--ceecCCHHhhcCCCCEEEE
Q 027577           32 YDLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQ-------LEKETG--AKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        32 ~~l~g~~vgIIG~--G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~-------~~~~~g--~~~~~~l~ell~~aDvVv~   98 (221)
                      ..+.|.+|++||=  ++++++.+..+..+|++|.+..|... . .+       .+.+.|  +....+++++++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            3688999999994  58999999999999999999987532 1 11       122334  3456799999999999986


Q ss_pred             eCCCC----hhh---------hhcchHHHHhc-CCCCCEEEEcC
Q 027577           99 NTPLT----EKT---------RGMFDKDRIAK-MKKGVLIVNNA  128 (221)
Q Consensus        99 ~~p~~----~~t---------~~~i~~~~~~~-mk~ga~lIn~s  128 (221)
                      -.=..    ++.         ..-++.+.++. .|++++|+.+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            43211    111         12356677765 46788888874

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.50  E-value=0.0029  Score=52.84  Aligned_cols=65  Identities=11%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCC--CCEEEEeCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVv~~~p  101 (221)
                      +|+|.|.|. |.||+.+++.|...|++|++.+|+..... .....+....+++++++.  +|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            689999996 99999999999999999999997543211 111122222345566664  899987764

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.48  E-value=0.0036  Score=54.11  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---CCeEEEEc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHD   66 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d   66 (221)
                      .+|||+|+|.||+.+.+.|...   +++|.+.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            3899999999999999998765   36776654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.48  E-value=0.0023  Score=51.61  Aligned_cols=65  Identities=20%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC----CCCEEEEeCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP----KCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~----~aDvVv~~~p  101 (221)
                      |+|.|.|. |.||+.+++.|...|++|++.+|+....+......+....+++++++    ..|+|+.+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCC
Confidence            47889985 99999999999999999999998753321100000111123344443    7999988764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.46  E-value=0.0061  Score=52.53  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (221)
                      .+|||+|+|.||+.+.+.|... .++|.+.+.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            3799999999999999998765 567766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	1e-36
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	5e-31
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	3e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-26
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	6e-24
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	2e-14
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	3e-14
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	6e-12
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-06
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.002

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  125 bits (313), Expect = 1e-36
 Identities = 88/178 (49%), Positives = 110/178 (61%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ +L
Sbjct: 11  ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G 
Sbjct: 71  HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 130

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  110 bits (275), Expect = 5e-31
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 13  LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 72

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 73  IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 132

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+  
Sbjct: 133 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 97.7 bits (242), Expect = 3e-26
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  +       GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 13  LLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFGAYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +     D +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 71  VAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 128

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+
Sbjct: 129 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHL 183

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.1 bits (243), Expect = 3e-26
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 13  LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D     P       A   + L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 71  YFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 126

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 127 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 186

Query: 179 SG 180
            G
Sbjct: 187 GG 188

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 92.1 bits (227), Expect = 6e-24
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 7/182 (3%)

Query: 3   ILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 11  ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 70

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 71  FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 129

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P      P +  PN   TP
Sbjct: 130 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 189

Query: 177 HV 178
           H 
Sbjct: 190 HA 191

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 67.1 bits (162), Expect = 2e-14
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           ++   ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F  
Sbjct: 10  IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA 67

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D  +       E    + + LD +  + D++ ++ P       M + + IAKMK+
Sbjct: 68  KVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 124

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY------------ 168
            V+IVN +RG ++DT AV+    SG I GY+ DV+  +    +  W              
Sbjct: 125 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 184

Query: 169 -MPNQAMTPHV 178
             PN  +TP  
Sbjct: 185 ARPNVLVTPKT 195

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 66.4 bits (160), Expect = 3e-14
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   +
Sbjct: 13  TLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKV 71

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   M               L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 72  IAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 127

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-------------PKDHPWRYM 169
           +++N AR  ++DTQA++    SG +AG   D +  +               P       M
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187

Query: 170 PNQAMTPHVSG 180
           PN  ++PH++ 
Sbjct: 188 PNVVLSPHIAY 198

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 60.2 bits (144), Expect = 6e-12
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 10/179 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 12  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 68

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R   +         +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 69  RGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 122

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQAMTPHVSG 180
           + VN  R  ++D   V+          ++ DVW       KD  +  +PN   TP V+G
Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 30  RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           RA D+   GK     G G +GK   Q L+ F   ++  +   ++        A  E    
Sbjct: 16  RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70

Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 144
           T + +          T     +       +MK   ++ N       +D + + +    
Sbjct: 71  TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
           VG +G G +GK + + L     +L+  DR           GA+       +  +CD+++ 
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62

Query: 99  NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
             P +   + +   +   I   K G ++++ +  A + ++ + DA  +  +      V  
Sbjct: 63  MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122

Query: 157 PQPAPKDHPWRYM 169
            +P   D     M
Sbjct: 123 GEPKAIDGTLSVM 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.71
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.7
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.67
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.6
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.55
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.53
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.38
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.37
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.34
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.26
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.12
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.11
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.08
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	99.01
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.9
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.89
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.87
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.86
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.84
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.82
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.81
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.75
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.71
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.62
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.59
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.47
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.47
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.43
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.41
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.36
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.35
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.35
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.28
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.27
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.22
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.21
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.18
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.17
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.16
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.09
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.05
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	98.03
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.98
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.97
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.97
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.94
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.94
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.92
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.91
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.91
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.9
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.9
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.88
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.88
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.87
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.85
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.85
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.85
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.84
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.82
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.81
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.81
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.8
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	97.76
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.75
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.72
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.71
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.7
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.69
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.69
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.69
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.68
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.68
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.64
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.6
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.59
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	97.58
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.56
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.56
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.52
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.51
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.5
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.49
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	97.49
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.43
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.43
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.41
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.41
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.39
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.35
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.34
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	97.32
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.3
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.29
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.27
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.27
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.26
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.25
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.25
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.24
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.23
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	97.18
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	97.17
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.14
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.1
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.07
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.06
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.04
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.98
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.87
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.81
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.79
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.76
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.75
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.75
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	96.74
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.73
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.66
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.65
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.65
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.64
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.63
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.6
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.55
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.54
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.5
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.5
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.5
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.44
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.43
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.41
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.37
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.37
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.35
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	96.32
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.31
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.27
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.24
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.21
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	96.21
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.15
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.1
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.1
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.08
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.08
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.05
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.05
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.03
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.03
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.99
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.98
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.98
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.98
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.97
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.96
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.96
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.96
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.95
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.91
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.91
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.91
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.91
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.91
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.87
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.86
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.81
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.77
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.75
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.75
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.69
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.69
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.68
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.68
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.68
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.62
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.61
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.6
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.59
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.59
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.55
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.54
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.48
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.48
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.44
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.43
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.41
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.4
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.4
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.36
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.31
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.28
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.24
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.19
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.19
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.18
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.15
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.15
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.09
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	95.08
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.07
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.99
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.99
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.96
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.89
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.82
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.77
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.72
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.71
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.69
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	94.66
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.61
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.52
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.49
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.33
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	94.27
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.23
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.15
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.14
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.05
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.97
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.92
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.92
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.77
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.77
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.75
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.66
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.41
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.41
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.36
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.3
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.18
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.18
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.09
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.95
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.95
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	92.8
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.71
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.65
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.61
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	92.45
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.29
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.21
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	92.16
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	92.14
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.96
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.94
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.93
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.79
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.73
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.64
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.62
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.49
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.47
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	91.41
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.39
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.33
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.27
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.14
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.01
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.99
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.84
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.65
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.31
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.27
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.19
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.09
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.06
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.06
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.99
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.97
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.93
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.87
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	89.82
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.79
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.62
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.6
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.23
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.18
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.13
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.11
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.05
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	88.97
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.81
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.8
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	88.64
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	88.48
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.46
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	88.26
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.12
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.01
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.95
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.7
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	87.02
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.9
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	86.64
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.61
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.32
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.12
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.12
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	85.97
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.77
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	85.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.72
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	85.4
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	85.13
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.09
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	85.06
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.03
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	85.0
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	84.96
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.66
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	84.33
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	84.23
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.08
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	83.91
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.25
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	83.1
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	83.1
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.52
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.41
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.23
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	82.04
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	82.03
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	81.98
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	81.3
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	81.13
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.07
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.74
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	80.64
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	80.6
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	80.58
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	80.44
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	80.15
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	80.1
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.05
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.02

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=5.3e-51  Score=328.36  Aligned_cols=180  Identities=28%  Similarity=0.462  Sum_probs=163.8

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccC-cccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      +|||+++|++.++++.+++|.|... .....+.++.|+|+||||+|+||+.+|++++.||++|++||+...........+
T Consensus        11 ~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~   90 (191)
T d1gdha1          11 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ   90 (191)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhccc
Confidence            4899999999999999999999643 233457899999999999999999999999999999999998765555444445


Q ss_pred             ceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 027577           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (221)
Q Consensus        80 ~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep  159 (221)
                      .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|++|||++||
T Consensus        91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1          91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence            55667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEECCCCCcC
Q 027577          160 APKDHPWRYMPNQAMTPHVSGT  181 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~~  181 (221)
                       +.++|||++||+++|||+|++
T Consensus       171 -~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         171 -NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             -SCCTTGGGCTTEEECSSCTTC
T ss_pred             -CCCchHHcCCCEEECCccccC
Confidence             568899999999999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=4e-51  Score=328.50  Aligned_cols=180  Identities=49%  Similarity=0.888  Sum_probs=168.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +|||++.|+++++++.+++|.|........+.+|.|++|||||+|+||+.+|+++++||++|.+||+...........++
T Consensus         9 ~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~   88 (188)
T d2naca1           9 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL   88 (188)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccc
Confidence            47999999999999999999997543333467899999999999999999999999999999999997766666666677


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.+|++|||++||.
T Consensus        89 ~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~~EP~  168 (188)
T d2naca1          89 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  168 (188)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCCCCCC
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEECCCCCc
Q 027577          161 PKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a~  180 (221)
                      +.++|||.+||+++|||+||
T Consensus       169 ~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         169 PKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCChHHcCCCeEEccccCc
Confidence            99999999999999999997

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.5e-51  Score=325.85  Aligned_cols=174  Identities=33%  Similarity=0.572  Sum_probs=160.6

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ||||++.|+++.+++.+++|.|.+..  ..+.++.|+++||+|+|.||+.+|+.+++|||+|++||+... .+.....++
T Consensus        11 ~liL~~~R~i~~~~~~~~~~~W~~~~--~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~-~~~~~~~~~   87 (184)
T d1ygya1          11 ALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGI   87 (184)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTC
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCccc--cccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC-hhHHhhcCc
Confidence            58999999999999999999998653  356789999999999999999999999999999999998653 444445566


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||++||+++|++|+|.+|++|||++||+
T Consensus        88 ~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~EP~  166 (184)
T d1ygya1          88 EL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  166 (184)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             ee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCCCC
Confidence            65 48999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEECCCCC
Q 027577          161 PKDHPWRYMPNQAMTPHVS  179 (221)
Q Consensus       161 ~~~~~l~~~~n~~~tPH~a  179 (221)
                      + ++|||++||+++|||||
T Consensus       167 ~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         167 T-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             S-CCGGGGCTTEEECSSCS
T ss_pred             C-CchHhcCCCEEECCCCC
Confidence            6 89999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=325.73  Aligned_cols=179  Identities=29%  Similarity=0.438  Sum_probs=163.5

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCc-----ccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAG-----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-----~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~   75 (221)
                      ++||++.|++...++.+++|.|....     ....+.+|.|+||||||+|+||+.+|+.+++|||+|++||+... .+..
T Consensus         9 ~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~-~~~~   87 (193)
T d1mx3a1           9 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS-DGVE   87 (193)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-TTHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccCccc-ccch
Confidence            48999999999999999999997542     12347899999999999999999999999999999999998653 3344


Q ss_pred             HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ...++....++++++++||+|++|+|+|++|+++++++.|+.||++++|||+|||++||++||+++|++|++.+|++|||
T Consensus        88 ~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  167 (193)
T d1mx3a1          88 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  167 (193)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence            45577777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCCCeEECCCCCc
Q 027577          156 NPQPAP-KDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       156 ~~ep~~-~~~~l~~~~n~~~tPH~a~  180 (221)
                      ++||.+ .++||+.+||+++|||+|+
T Consensus       168 ~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         168 ESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999987 5789999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=2e-49  Score=321.15  Aligned_cols=176  Identities=25%  Similarity=0.443  Sum_probs=156.9

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|++...++.+++|.|.+.. ...+.+|.|+||||||+|+||+.+|+++++|||+|++||+......   ...+
T Consensus        11 ~~iL~l~R~~~~~~~~~~~g~w~~~~-~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~   86 (199)
T d1dxya1          11 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDF   86 (199)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCccc-CcccccccceeeeeeecccccccccccccccceeeeccCCccchhh---hcch
Confidence            47999999999999999999997543 2356899999999999999999999999999999999998653321   1223


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      .. .++++++++||+|++|+|+|++|+++++++.|+.||+++++||+|||++||++||+++|++|+|.||++|||++||.
T Consensus        87 ~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~  165 (199)
T d1dxya1          87 DY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETE  165 (199)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHH
T ss_pred             hH-HHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCCc
Confidence            33 58999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCCCCCCCeEECCCCCcC
Q 027577          161 P-------------KDHPWRYMPNQAMTPHVSGT  181 (221)
Q Consensus       161 ~-------------~~~~l~~~~n~~~tPH~a~~  181 (221)
                      +             ..+||+.+|||++|||+|||
T Consensus       166 ~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         166 DLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             chhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            2             22467889999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=9.3e-49  Score=316.44  Aligned_cols=175  Identities=27%  Similarity=0.445  Sum_probs=156.0

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||+++|++...++.+++|.|.+..  ..+++|.|+||||||+|+||+.+|+++++|||+|++||+... ... ...++
T Consensus        10 ~~~l~l~r~~~~~~~~~~~~~~~w~~--~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~-~~~-~~~~~   85 (197)
T d1j4aa1          10 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PEL-EKKGY   85 (197)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-HHH-HHTTC
T ss_pred             HHHHHHHhCcHHHHHHHHhCCCCcCC--CcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccc-ccc-cccee
Confidence            47899999999999999999887654  347899999999999999999999999999999999998653 222 22234


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                       ...++++++++||+|++|+|+|++|+++++++.|+.||+++++||+|||++||+++|.++|++|++.+|++|||++||.
T Consensus        86 -~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep~  164 (197)
T d1j4aa1          86 -YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  164 (197)
T ss_dssp             -BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             -eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCCc
Confidence             3468999999999999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             C-------------CCCCCCCCCCeEECCCCCc
Q 027577          161 P-------------KDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       161 ~-------------~~~~l~~~~n~~~tPH~a~  180 (221)
                      .             .++|||.+|||++|||+|+
T Consensus       165 ~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         165 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            3             3456889999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.2e-48  Score=309.12  Aligned_cols=174  Identities=28%  Similarity=0.451  Sum_probs=149.2

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      ++||++.|+++..++++++|.|.+..  ..+++|.|++|||||+|.||+.+|++++.||++|++||+......    ...
T Consensus        11 ~~il~l~R~~~~~~~~~~~~~w~~~~--~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~   84 (188)
T d1sc6a1          11 GELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNA   84 (188)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTC
T ss_pred             HHHHHHHhChHHHHHHHHhCCCcccc--cccccccceEEEEeecccchhhhhhhcccccceEeeccccccchh----hhh
Confidence            47999999999999999999998653  346789999999999999999999999999999999998653221    123


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCC
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~  160 (221)
                      ..+.++++++++||+|++|+|+|++|+++++++.|+.||++++|||+|||++||+++|+++|+++++.+|++|||++||.
T Consensus        85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1          85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             hhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCCCCCC
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C----CCCCCCCCCCeEECCCCCc
Q 027577          161 P----KDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       161 ~----~~~~l~~~~n~~~tPH~a~  180 (221)
                      .    ..+||+++|||++|||+||
T Consensus       165 ~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         165 TNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSC
T ss_pred             CcCCccchhHhcCCCEEEcCCcCc
Confidence            4    4568999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.2e-47  Score=306.24  Aligned_cols=171  Identities=22%  Similarity=0.350  Sum_probs=155.4

Q ss_pred             CcHHHHHhCchHHHHHHHcCCCccCcccCcccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      +|||++.|++..+++.+++|.|....   ...+|.|+||||||+|.||+.+|+.+++||++|++||+++...      ..
T Consensus        10 ~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------~~   80 (181)
T d1qp8a1          10 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------PW   80 (181)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeecccccccccccccccc------ce
Confidence            58999999999999999999997642   2346999999999999999999999999999999999875322      12


Q ss_pred             eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCC-C
Q 027577           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ-P  159 (221)
Q Consensus        81 ~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~e-p  159 (221)
                      ....++++++++||+|++|+|+|++|+++++++.|+.||++++|||+|||++||+++|+++|++|++.+|++|||++| |
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~p  160 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  160 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCCCCC
Confidence            334689999999999999999999999999999999999999999999999999999999999999999999999765 5


Q ss_pred             CCCCCCCCCCCCeEECCCCCc
Q 027577          160 APKDHPWRYMPNQAMTPHVSG  180 (221)
Q Consensus       160 ~~~~~~l~~~~n~~~tPH~a~  180 (221)
                      .+.++||+.+|||++|||+||
T Consensus       161 ~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         161 FAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             CGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCChHHcCCCEEeccccCc
Confidence            678899999999999999997

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.71  E-value=9.3e-18  Score=129.54  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      +||||||+|.||..+|++|...|++|++||+++...+.+.+.+.....+++++++++|+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            689999999999999999999999999999987666666777888888999999999999999998888877663  457


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      +..+++|.++||++...+-....+.+.+++..+.  .+|
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLD  117 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eec
Confidence            8889999999999999998889999999998887  677

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-17  Score=124.77  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=92.0

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +..|.||+++|+|+|.+|+.+|+.++++|++|+++|+.+...-.+...|+... +++++++.+|+++.++.    ++++|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTG----n~~vI   93 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTG----CIDII   93 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSS----CSCSB
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCC----Cccch
Confidence            45799999999999999999999999999999999997643334444566654 89999999999988875    67889


Q ss_pred             hHHHHhcCCCCCEEEEcC-CCCccCHHHHHHHHHh
Q 027577          111 DKDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSS  144 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~s-rg~~vd~~al~~al~~  144 (221)
                      +.+.|+.||+|+++.|++ +..-+|.++|.+...+
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhccce
Confidence            999999999999999987 5666999998875433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.67  E-value=1.2e-16  Score=123.28  Aligned_cols=143  Identities=16%  Similarity=0.123  Sum_probs=98.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc-eecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      +||||||+|.||.++|+.|++.|++|++|||++...+.+.+.+. ....+..+.+++||+|++++|. ..+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            68999999999999999999999999999997655555566664 2233445778999999999993 3455555 4677


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC-CCCCCCCCCCCCCCeEECCCCCcCC
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGTT  182 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~-ep~~~~~~l~~~~n~~~tPH~a~~t  182 (221)
                      ..+++++++++++......... ...+....+..-.+...+. .|......|+....+++||+-++..
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~  145 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDP  145 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCH
Confidence            8899999999998665333333 3333333333222221111 1222344577777799999987653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=2.4e-16  Score=121.66  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch--HHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~--~~~  114 (221)
                      ++|||||+|.||.++|++|...|++|.+||+++...+.+...+.....++.+++..+|+|++|+|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999987666666777877778999999999999999998777766653  346


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      +..+++|.++||++...+-+...+.+.+++..+.  ++|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7789999999999999999999999999998887  7774

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.60  E-value=1.1e-14  Score=112.35  Aligned_cols=143  Identities=11%  Similarity=0.029  Sum_probs=104.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHhh-cCCCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~el-l~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      |+|+|||+|.||.++|+.|+..|+  +|++||+++...+.+.+.+.  ....+.++. ...+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            479999999999999999998885  79999998766666666664  233444443 3579999999992 2344444 


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCC-CCCCCCCCCCCCCCeEECCCCCcC
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGT  181 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~-ep~~~~~~l~~~~n~~~tPH~a~~  181 (221)
                      .+....+++++++++++.....-.+++.+.+...-+.+--+.-.+. .|......|+.-..+++|||-...
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~  150 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCC
Confidence            4566779999999999987776677777777766555545543332 244455668888889999998753

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.55  E-value=1.1e-14  Score=111.41  Aligned_cols=104  Identities=17%  Similarity=0.233  Sum_probs=88.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .-|.||++.|+|||.+|+.+|++++++|++|++++..|...-.+...|++. .+++++++.+|+++.++.    ..++++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCC----CCcccc
Confidence            458999999999999999999999999999999998764444445567776 489999999999999987    456899


Q ss_pred             HHHHhcCCCCCEEEEcCCCCc-cCHHHHHH
Q 027577          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~-vd~~al~~  140 (221)
                      .+.|..||+|+++.|++.... +|.++|.+
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            999999999999999998765 66666543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.53  E-value=9.5e-15  Score=113.88  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC--------ceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--------~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .+|||||+|.||.++|++|...|++|++|||++.+.+.+.+.+        .....++.+.+..+|++++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            5799999999999999999999999999999875555444332        22234566778899999999998877766


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ++ ...+..+++|.++||++...+-+...+.+.+.+..+.  .+|
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~ld  124 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVG  124 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eec
Confidence            54 5678889999999999999999999999999999887  677

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=1.3e-12  Score=99.34  Aligned_cols=101  Identities=12%  Similarity=0.239  Sum_probs=82.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~  115 (221)
                      +||||||+|+||+++++.|...|.++++++|+..+.+. .++.|+....+.++++++||+|++|++  |+.    -.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence            68999999999999999999999999999987544333 356688888899999999999999997  332    24567


Q ss_pred             hcCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       116 ~~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                      +.++++.++|+++.|  +..+.|.+.+..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            889999999999887  5677777777543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.37  E-value=5.1e-13  Score=101.39  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                      +||||||+|+||+.+|+.|...|++|.++++.......+...+.....++++++++||+|++|+|..... ..+ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHH-Hhhcc
Confidence            6899999999999999999999999999998664444333334434567899999999999999954332 222 22222


Q ss_pred             cCCCCCEEEEcCCCCccCHHHHHHHHHhC
Q 027577          117 KMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (221)
Q Consensus       117 ~mk~ga~lIn~srg~~vd~~al~~al~~g  145 (221)
                        ..+.++|+++.........+.+.+++.
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhcc
Confidence              236799999998887788888887654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=1.1e-12  Score=100.06  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHh
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~  116 (221)
                      ||||||+|.||..+|++|...|+.+ +|+++.... +.....+.. . +..+.+.++|++++++|..++.... ....+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~v~~~-~~~l~~   77 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSE-A-VPLERVAEARVIFTCLPTTREVYEV-AEALYP   77 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCE-E-CCGGGGGGCSEEEECCSSHHHHHHH-HHHHTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCc-c-cccccccceeEEEecccchhhhhhh-hccccc
Confidence            7999999999999999999888866 566654322 233333433 2 3346667899999999977666544 456888


Q ss_pred             cCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus       117 ~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                      .++++.++||++...+-....+.+.+++..+.  ++|.
T Consensus        78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          78 YLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            99999999999999999999999999998887  7773

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.26  E-value=5.7e-12  Score=97.69  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc--------eecCCH---HhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--------KFEEDL---DTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~--------~~~~~l---~ell~~aDvVv~~~p~~~~  105 (221)
                      ++|||||+|.||..+|++|...|++|.+|||++...+.+.+.+.        ....+.   -..+..++.++.+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            68999999999999999999999999999997654444433332        122233   3455788999999986666


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ....++ .....++++.++||++....-+...+.+.|.+..+.  .+|
T Consensus        82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~ld  126 (178)
T d1pgja2          82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLG  126 (178)
T ss_dssp             HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhccee--Eec
Confidence            655553 566778999999999999999999999999988887  455

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.22  E-value=4e-11  Score=92.45  Aligned_cols=108  Identities=16%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC---------------ceecCCHHhhcCCCCEEEEeC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG---------------AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g---------------~~~~~~l~ell~~aDvVv~~~  100 (221)
                      .|||+|||.|.||..+|..|...|++|.+|++++...+...+.+               .....++++.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            48999999999999999999999999999999754333333322               122367899999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      | +.....+ -++....++++++++ ...|.......+.+.+....
T Consensus        81 ~-~~~~~~~-~~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 P-AIHHASI-AANIASYISEGQLII-LNPGATGGALEFRKILRENG  123 (184)
T ss_dssp             C-GGGHHHH-HHHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHHTT
T ss_pred             c-hhHHHHH-HHHhhhccCCCCEEE-EeCCCCccHHHHHHHHHHhc
Confidence            9 3333333 345667889999877 45555555556666666554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=1.4e-10  Score=87.33  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ...=++|+||| +|.||+++|++|++.|++|.+||++..             .+.++.++.+|++++++|.. . ...+.
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~-~-~~~v~   70 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPIN-L-TLETI   70 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGG-G-HHHHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchh-h-heeee
Confidence            34567999999 999999999999999999999998642             13346678899999999933 2 23345


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHH
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~a  141 (221)
                      .+....++++++++|++.-..--.+++.+.
T Consensus        71 ~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          71 ERLKPYLTENMLLADLTSVKREPLAKMLEV  100 (152)
T ss_dssp             HHHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             ecccccccCCceEEEecccCHHHHHHHHHH
Confidence            677888999999999987544333444433

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=1.2e-11  Score=93.31  Aligned_cols=89  Identities=16%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~m  118 (221)
                      |||||+|+||+++++.|+..+..+.+|+|++...+.+.+.+.....+++++++++|+|++|+|.. ..     .+.+..+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence            79999999999999999875544568999765555454444444568889999999999999943 22     2344555


Q ss_pred             -CCCCEEEEcCCCCcc
Q 027577          119 -KKGVLIVNNARGAIM  133 (221)
Q Consensus       119 -k~ga~lIn~srg~~v  133 (221)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             479999999877553

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.08  E-value=1.1e-10  Score=88.26  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=71.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      ++|||||+|+||+++++.|...| .+|+++||++...+. .++.++...++.++ ++++|+|+++++  |+.   + .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~---~-~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQD---M-EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHH---H-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHH---H-HHh
Confidence            68999999999999999886555 899999998654444 34567877766655 678999999997  432   1 223


Q ss_pred             HhcC-CCCCEEEEcCCCCccCHHHHHHHHH
Q 027577          115 IAKM-KKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus       115 ~~~m-k~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      ++.+ +.+.++|++..|-  ..+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            3333 3478999998875  4566777764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=2.8e-10  Score=87.35  Aligned_cols=95  Identities=24%  Similarity=0.352  Sum_probs=76.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      -|++|+|+|||+|+-|++-|.+|+..|++|++--|... +.+.+++.|++.. +.+|+++.+|+|.+.+| ++....+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~P-D~~q~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTP-DEFQGRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSC-HHHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecc-hHHHHHHHH
Confidence            36799999999999999999999999999887766442 3456667788865 89999999999999999 333445566


Q ss_pred             HHHHhcCCCCCEEEEcCCC
Q 027577          112 KDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg  130 (221)
                      ++....||+|+.+. .+.|
T Consensus        91 ~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCC
T ss_pred             HhhhhhcCCCcEEE-Eecc
Confidence            77889999998876 3344

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.90  E-value=3.3e-09  Score=83.77  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=83.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-CCCEEEEeCCCChhhhhcch
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~  111 (221)
                      +|.|+||+|.|+|++|+.+|+.|...|++|+++|.+..........+.+.+ +.++++. +||+++-|.-     .+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~-----~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM-----GGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC-----SCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc-----ccccc
Confidence            599999999999999999999999999999999986544445556677766 6677775 7999987753     56788


Q ss_pred             HHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .+..+.++- .+|+..+.+.+.++ +..+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~-~~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADE-AASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSH-HHHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchh-hHHHHhcccceE
Confidence            888888863 46666666666555 445677777665

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.89  E-value=7.2e-09  Score=80.21  Aligned_cols=95  Identities=21%  Similarity=0.287  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecC----------------------------
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE----------------------------   84 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~----------------------------   84 (221)
                      .+.--+|.|||.|..|..-++.++.+|.+|.++|.+....+..++.+...+.                            
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            3556799999999999999999999999999999988777777766543321                            


Q ss_pred             -CHHhhcCCCCEEEEeC--CCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           85 -DLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        85 -~l~ell~~aDvVv~~~--p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       .+.+.++++|+|+.++  | ......++.++.++.||||++|||++
T Consensus       106 ~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEe
Confidence             1334578999998764  3 22345678999999999999999997

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.87  E-value=2.7e-09  Score=81.24  Aligned_cols=94  Identities=26%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCC-hhHHHhcCcee--cCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~~g~~~--~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .+++++|.|||.|.||+.+++.|...|. ++.+++|+... .+.+.+++...  ++++.+.+.++|+|+.|++.   ...
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence            5899999999999999999999999998 59999997533 33555556543  45777888899999999873   244


Q ss_pred             cchHHHHhcC------CCCCEEEEcCC
Q 027577          109 MFDKDRIAKM------KKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~m------k~ga~lIn~sr  129 (221)
                      +++.+.++..      ++..+|||.+.
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecC
Confidence            5666555321      23346666643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.86  E-value=1.6e-09  Score=82.92  Aligned_cols=97  Identities=12%  Similarity=0.172  Sum_probs=75.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc---Ccee----cCCHHhhcCCCCEEEEeCC-CCh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GAKF----EEDLDTMLPKCDIVVVNTP-LTE  104 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~---g~~~----~~~l~ell~~aDvVv~~~p-~~~  104 (221)
                      .+.-.+|.|||.|..|..-++.++.+|.+|.++|.+....+..+..   .+..    ...+++.+++||+||.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            4567899999999999999999999999999999875444333322   1211    1246788899999988752 134


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      ....++.++.++.||||+++||++-
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeec
Confidence            5567899999999999999999974

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.84  E-value=6.5e-09  Score=82.23  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             CCCC-CEEEEEccCHHHHHHHHHHcc------CCCeEEEE-cCCCCChhHHHhcCcee----cCCHHhhcCCCCEEEEeC
Q 027577           33 DLEG-KTVGTVGCGRIGKLLLQRLKP------FNCNLLYH-DRVKMDPQLEKETGAKF----EEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g-~~vgIIG~G~iG~~iA~~l~~------~G~~V~~~-d~~~~~~~~~~~~g~~~----~~~l~ell~~aDvVv~~~  100 (221)
                      -+.| |||+|||+|+-|++-|..|+.      .|.+|++- .....+.+.+++.|+..    +.+.+|+++++|+|.+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            3678 899999999999999999998      45666544 44345667777778752    236889999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEE
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn  126 (221)
                      |+.. ...+. ++....||+|+.+.=
T Consensus       120 PDe~-Q~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSA-QADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHH-HHHHH-HHHHHHSCTTCEEEE
T ss_pred             chHH-HHHHH-HHHHHhcCCCceeee
Confidence            9333 33344 578899999998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.7e-09  Score=80.98  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-----------h------------------cCceecCCHH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E------------------TGAKFEEDLD   87 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~------------------~g~~~~~~l~   87 (221)
                      ++|+|||.|.||+.+|..+...|++|++||+++...+.+.           +                  ..+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999763221110           0                  1234557888


Q ss_pred             hhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      +.+++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.+.+.. .=+..++--|
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff  149 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFF  149 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeeccc
Confidence            9999999999999977777766666677778999998776654  445556665543 3333455533

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.81  E-value=9.8e-10  Score=86.06  Aligned_cols=93  Identities=20%  Similarity=0.308  Sum_probs=66.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ++|+|||.|.+|.++|..|...|.+|..|+|++...+...+              .++....+++++++++|+|++++| 
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP-   86 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP-   86 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC-
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc-
Confidence            47999999999999999999999999999986432221111              123455789999999999999999 


Q ss_pred             ChhhhhcchHH--H--HhcCCCCCEEEEcCCC
Q 027577          103 TEKTRGMFDKD--R--IAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 ~~~t~~~i~~~--~--~~~mk~ga~lIn~srg  130 (221)
                      +...+.++.+-  .  ....+++..+|+++.|
T Consensus        87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            33333333221  0  1123567889999887

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=8.8e-09  Score=77.63  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc-------eecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      |||+|||.|.||..+|..|...|++|.+++|.....+.....+.       ....+..+.+..+|+|+++++ ...+...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH
Confidence            68999999999999999999999999999997654332211111       112344566788999999998 3344433


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      + +.....+++++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 3455677889999988766

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.73  E-value=2.2e-08  Score=78.68  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=74.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDvV   96 (221)
                      |+|+|||+|.+|.++|..+...|++|++||.+....+...                    .......+++++++++||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            6899999999999999999999999999998542211110                    11223457889999999999


Q ss_pred             EEeCCCChh----------hhhcch--HHHHhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577           97 VVNTPLTEK----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (221)
Q Consensus        97 v~~~p~~~~----------t~~~i~--~~~~~~mk~ga~lIn~srg~~vd~~al~~al  142 (221)
                      ++|+| ||.          ....+.  ...+...+++.++|..|...+-..+.+...+
T Consensus        81 ~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~  137 (202)
T d1mv8a2          81 FICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPL  137 (202)
T ss_dssp             EECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHH
T ss_pred             EEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhh
Confidence            99998 331          111111  1344556789999999988776666655443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.71  E-value=1.5e-08  Score=78.27  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhc----------------CceecCCHHhhcCCCCEEEEeC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      |+|+|||.|.||.++|..|...|.+|.+|.|... .+..+..                .+...++++++++++|+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~-~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD-TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG-HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc-HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            6899999999999999999999999999987432 1111110                1223467889999999999999


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCCCCc
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~  132 (221)
                      | +...+.++ ++....+++ ..+|.++.|..
T Consensus        80 p-s~~~~~~~-~~l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          80 S-TDGVLPVM-SRILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             C-GGGHHHHH-HHHTTTCCS-CEEEECCCSEE
T ss_pred             c-hhhhHHHH-Hhhcccccc-ceecccccCcc
Confidence            9 33444443 345555655 56666777753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.62  E-value=3.4e-08  Score=70.53  Aligned_cols=92  Identities=13%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh--HHHhcCceec--CCHHhhcCCCCEEEEeCCCChhhh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~~~--~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .+|+||+|.|||.|.+|.+-|+.|..+|++|+++++......  .....+++..  .--++.+..+++|+.++.     .
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-----d   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-----D   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-----C
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-----C
Confidence            479999999999999999999999999999999998653221  1122223211  112345778999988875     2


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ..++.+..+.+++..++||++
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHHcCCEEEeC
Confidence            235666666777788999974

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.59  E-value=3e-08  Score=77.09  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=81.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (221)
                      ++|+|||.|.||+.+|..+...|++|.+||+++...+...+           .+             +....+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            57999999999999999999999999999997533221100           00             2222333 34788


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      ||+|+-++|-+.+.+.-+-.+.-+.++++++|.+.+.+-  ....|.+.+.. .=+..++-.|
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~-p~r~~g~Hf~  143 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFF  143 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECC
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccC-chheEeeccc
Confidence            999999999888877777777778889999998877664  44566666543 3333455533

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=8.5e-08  Score=69.97  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhh-cCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|.++...+.+...+...       .+.++++ ++++|.++++++.+..+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            6789999999999999999999999999998765444444444322       1233444 688999999999665543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.43  E-value=1.9e-06  Score=66.67  Aligned_cols=131  Identities=12%  Similarity=0.131  Sum_probs=84.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh------------------cCceecCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~------------------~g~~~~~~l~ell~~aDvVv~   98 (221)
                      |+|+|||+|.+|..+|..+. .|++|++||.++...+....                  .......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998775 69999999986532221111                  112223455666788999999


Q ss_pred             eCCCChhhhh-c--c-----hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCC---C
Q 027577           99 NTPLTEKTRG-M--F-----DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW---R  167 (221)
Q Consensus        99 ~~p~~~~t~~-~--i-----~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l---~  167 (221)
                      ++|....... .  +     ..+.+...+++.++|.-+.-.+-..+.+...+.+.++.      +.+|-....+-+   .
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9995432221 1  1     11223345678888888887777777787777766543      356655554444   3


Q ss_pred             CCCCeEE
Q 027577          168 YMPNQAM  174 (221)
Q Consensus       168 ~~~n~~~  174 (221)
                      ..|++++
T Consensus       154 ~p~riv~  160 (196)
T d1dlja2         154 YPSRIIV  160 (196)
T ss_dssp             SCSCEEE
T ss_pred             CCCEEEE
Confidence            4455554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.2e-07  Score=65.20  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--hHHHhcCce--ecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~--~~~~l~ell~~aDvVv~~~  100 (221)
                      +++||+|+|+|+|..|.++|+.|...|++|+++|.+....  +.... +..  ....-++.+.+.|+|+++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEECC
Confidence            5889999999999999999999999999999999765322  11111 221  1112245667889888754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=6e-07  Score=68.33  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----c-CceecCCHHh-hcCCCCEEEEeCCCCh
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----T-GAKFEEDLDT-MLPKCDIVVVNTPLTE  104 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~-g~~~~~~l~e-ll~~aDvVv~~~p~~~  104 (221)
                      ..+.||+|.|+|.|..+++++..|...|.+|.+++|+....+...+    . .+... ++++ ...++|+|+.|+|..-
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGI   91 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGG
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCc
Confidence            4688999999999999999999999999999999997643332221    1 12333 3333 3467999999999543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.35  E-value=1.6e-07  Score=70.93  Aligned_cols=90  Identities=17%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh-cCce--------ecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK--------FEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~--------~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ++|+|.|||+|.||+.+|+.|...|++|+++||+....+.+.+ .+..        ....+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4799999999999999999999999999999997644333322 2211        112345667889999998883322


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                        ..+   .....+.+..+++.+.
T Consensus        81 --~~~---~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          81 --ATV---IKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             --HHH---HHHHHHHTCEEECSSC
T ss_pred             --hHH---HHHHHhhccceeeccc
Confidence              111   2233345677777753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.35  E-value=1.3e-06  Score=69.81  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-HHHhcCceecCCHHhhc-CCCCEEEEeCCCChhhhhc
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell-~~aDvVv~~~p~~~~t~~~  109 (221)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+....+ .....+.... +.++++ ..|||++-|.-     .+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----ccc
Confidence            369999999999999999999999999999999997643332 2334566655 556665 46999998864     567


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      |+.+....++- .+|+-.+...+.+.++. +.|.+..|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888863 57777777888877664 445555554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.28  E-value=1.7e-06  Score=65.66  Aligned_cols=85  Identities=15%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ..||||||+|.||+.+++.++.. ++++. ++|++....   ...++....+.+++..+.|+|++|+|....     .+-
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h-----~~~   74 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---TKTPVFDVADVDKHADDVDVLFLCMGSATD-----IPE   74 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---SSSCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc---cccccccchhhhhhccccceEEEeCCCccc-----HHH
Confidence            45899999999999999999875 67755 567654322   233455566788888999999999994322     223


Q ss_pred             HHhcCCCCCEEEEcC
Q 027577          114 RIAKMKKGVLIVNNA  128 (221)
Q Consensus       114 ~~~~mk~ga~lIn~s  128 (221)
                      ....++.|.-+|.+.
T Consensus        75 a~~aL~aG~~vv~~~   89 (170)
T d1f06a1          75 QAPKFAQFACTVDTY   89 (170)
T ss_dssp             HHHHHTTTSEEECCC
T ss_pred             HHHHHHCCCcEEEec
Confidence            344567787777543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=5.7e-07  Score=68.16  Aligned_cols=92  Identities=24%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec------CC-HHhhcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~-l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .|.+|.|+|.|.+|...++.++.+|++|+++|+++.+.+.++++|+..+      .+ .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            4899999999999999999999999999999998888888888886421      11 22344568999888763221  


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ......++.++++..++.++-
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECCC
T ss_pred             -chHHHHHHHhhccceEEEecc
Confidence             112345677888888888753

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.1e-06  Score=66.30  Aligned_cols=107  Identities=17%  Similarity=0.286  Sum_probs=67.8

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      .+|||||+|.+|+. .+..++.. ++++. ++|++....+ .....++..++++++++++.|+|++++|..  ++.-+-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~--~h~~~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA--SHFDVVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT--HHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch--hcccccc
Confidence            48999999999986 56667654 67754 6788765443 445668888889999999999999999933  3222323


Q ss_pred             HHHhcCCCCC-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga-~lIn~-srg~~vd~~al~~al~~g~i~  148 (221)
                      ..   ++.|. +++.- ---.+-+...|.++.++.++.
T Consensus        80 ~a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cc---ccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            33   33443 33332 112233455566666555443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.22  E-value=3e-06  Score=61.51  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=59.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hcCceec----CCH---Hhh-cCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~l---~el-l~~aDvVv~~~p~~~~t~  107 (221)
                      |+|.|+|+|.+|+.+|+.|...|.+|++.|.++...+.+. ..+...+    .+.   +++ ++++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            6899999999999999999999999999998764433333 3354332    222   222 5789999988874433  


Q ss_pred             hcchHHHHhcCCCCCEEE
Q 027577          108 GMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lI  125 (221)
                      .++-....+.+.+..++.
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            233344445566665554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.6e-06  Score=64.93  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=65.4

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.+++||+|.|||-+. +|+.+|..|...|+.|..++...              .++.+.++++|+|+.+++.    .++
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~----~~~   95 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PEM   95 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccc----ccc
Confidence            4579999999999876 99999999999999999998632              2556778899999999972    345


Q ss_pred             chHHHHhcCCCCCEEEEcCCCCccC
Q 027577          110 FDKDRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg~~vd  134 (221)
                      +..+   ..|+|+++||++--.+.|
T Consensus        96 i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          96 VKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             BCGG---GSCTTCEEEECCCBC---
T ss_pred             cccc---cccCCCeEeccCcccccc
Confidence            6544   468999999997654433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.8e-06  Score=64.26  Aligned_cols=90  Identities=22%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc--------CCCCEEEEeC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML--------PKCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell--------~~aDvVv~~~  100 (221)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|...+     .+..+..        ..+|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            37899999999999999999999999 79999998777778888886432     2333222        3589999988


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +. +.    .-+..++.++++..++.++-
T Consensus       106 G~-~~----~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GA-EA----SIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CC-HH----HHHHHHHHSCTTCEEEECSC
T ss_pred             CC-ch----hHHHHHHHhcCCCEEEEEec
Confidence            72 22    22456778899988888764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.5e-06  Score=66.73  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHH----hc----Cc----eec---CCHHhhcCCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----ET----GA----KFE---EDLDTMLPKCD   94 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~----~~----g~----~~~---~~l~ell~~aD   94 (221)
                      +.++++++|.|+|.|..|++++..|...|. ++++++|+....+.+.    ..    ..    ...   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999998888 5889999875543221    11    11    111   22445678899


Q ss_pred             EEEEeCCCC
Q 027577           95 IVVVNTPLT  103 (221)
Q Consensus        95 vVv~~~p~~  103 (221)
                      +|+.++|..
T Consensus        93 iiIN~Tp~G  101 (182)
T d1vi2a1          93 ILTNGTKVG  101 (182)
T ss_dssp             EEEECSSTT
T ss_pred             eeccccCCc
Confidence            999999954

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.4e-06  Score=64.77  Aligned_cols=79  Identities=18%  Similarity=0.344  Sum_probs=64.3

Q ss_pred             ccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      +.++.||+|.|||-+. +|+.++..|...|++|+.++...              .++.+.+++||+|+.++..    .++
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~----p~~   93 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGF   93 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccC----ccc
Confidence            4579999999999876 99999999999999999887532              3567778899999999872    355


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+   .+|+|+++||++--
T Consensus        94 i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          94 IPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             BCTT---TSCTTCEEEECCCE
T ss_pred             cccc---ccCCCcEEEecCce
Confidence            6554   46899999999743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.09  E-value=4.1e-06  Score=63.07  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-------CCHHhh---c-----CCCCEEEEe
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTM---L-----PKCDIVVVN   99 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~el---l-----~~aDvVv~~   99 (221)
                      .|.+|.|+|.|.||...++.++.+|++|+++|+++.+.+.++++|....       .+..+.   +     ..+|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            4789999999999999999999999999999998766777777775321       112211   1     347988888


Q ss_pred             CCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      +. .+.+    -...++.++++..++.++-
T Consensus       106 ~g-~~~~----~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         106 SG-NEKC----ITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SC-CHHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CC-ChHH----HHHHHHHHhcCCceEEEec
Confidence            76 2222    2345677888888888764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.05  E-value=1.7e-06  Score=65.88  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHH-Hhc----CceecCCHHhhcCCCCEEEEeCCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKFEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~~~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      .+.|++|.|+|.|..+++++..|...+.+|++++|+....+.. +..    .+......+..+.++|+|+.|+|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            5789999999999999999999988788999999976433322 221    1222222223457899999999943

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=98.03  E-value=2.2e-05  Score=62.94  Aligned_cols=108  Identities=21%  Similarity=0.351  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC--------CChhHHH----------------hcCceecCCHHh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLEK----------------ETGAKFEEDLDT   88 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~~~~----------------~~g~~~~~~l~e   88 (221)
                      +|.|+||.|-|+|++|+.+|+.|...|++|++++.+.        ...+...                ..+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            6999999999999999999999999999988765331        1111111                112333334556


Q ss_pred             hc-CCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           89 ML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        89 ll-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      ++ ..||+++-|..     .+.|+.+....++- .+|+-.+-+.+ ..++ .+.|.+..|.
T Consensus       108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            55 47999998875     45677777777763 56666666665 6666 4778777776

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.02  E-value=1.4e-05  Score=60.04  Aligned_cols=90  Identities=13%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             CEEEEEccCHHHHH-HHHHHccCC-CeEE-EEcCCCCCh--hHHHhcCceec-CCHHhhc-----CCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPFN-CNLL-YHDRVKMDP--QLEKETGAKFE-EDLDTML-----PKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~G-~~V~-~~d~~~~~~--~~~~~~g~~~~-~~l~ell-----~~aDvVv~~~p~~~~  105 (221)
                      .+|||||.|.||+. +.+.++.+. .++. +.+++....  ..+++.++... .++++++     .+.|+|++++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 567777654 4554 457765433  34566777543 3344443     468999999983222


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                         .-.+..++..+.|..+|+-+.
T Consensus        85 ---~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 ---VQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             ---HHHHHHHHHHCTTCEEEECST
T ss_pred             ---HHhHHHHHHHHcCCEEEEccc
Confidence               222344566799999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=2.4e-06  Score=65.33  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=40.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCce
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAK   81 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~   81 (221)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|..
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~   75 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD   75 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccce
Confidence            48999999999999999999999998 799999977666777777753

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=3.4e-06  Score=64.34  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             cccCCCCCEEEEEccCH-HHHHHHHHHccCCCeEEEEcCCCCChhHHHh-------cCce---e--cCCHHhhcCCCCEE
Q 027577           30 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------TGAK---F--EEDLDTMLPKCDIV   96 (221)
Q Consensus        30 ~~~~l~g~~vgIIG~G~-iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~-------~g~~---~--~~~l~ell~~aDvV   96 (221)
                      .+.++.||++.|||-++ +|+++|..|...|..|..++..... .....       .+..   .  .+.+++...++|+|
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ-KFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE-EEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccc-ccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            35689999999999886 5999999999999999988754211 00000       0000   0  12266777789999


Q ss_pred             EEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCC
Q 027577           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (221)
Q Consensus        97 v~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~  131 (221)
                      +.++|...   ..+..   +..|+|+++||++-..
T Consensus       102 IsavG~p~---~~i~~---d~ik~GavvIDvGi~~  130 (171)
T d1edza1         102 ITGVPSEN---YKFPT---EYIKEGAVCINFACTK  130 (171)
T ss_dssp             EECCCCTT---CCBCT---TTSCTTEEEEECSSSC
T ss_pred             EEccCCCc---cccCh---hhcccCceEeeccccc
Confidence            99998221   11433   3468999999998653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1e-05  Score=60.89  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec---CCH---HhhcCCCCEEEEeCCCChhhhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL---DTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l---~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++....+.++++|...+   .+.   .+..+..|+++-++....    
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~----  105 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH----  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch----
Confidence            3889999999999999999999999999999987766677788886422   111   223356899998886322    


Q ss_pred             cchHHHHhcCCCCCEEEEcCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .-...+..++++..++.++.
T Consensus       106 -~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         106 -NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             -CHHHHHTTEEEEEEEEECCC
T ss_pred             -hHHHHHHHHhcCCEEEEecc
Confidence             12345677888888887753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=9.1e-06  Score=62.04  Aligned_cols=107  Identities=19%  Similarity=0.361  Sum_probs=68.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEE-EEcCCCCChh-HHHhcC----ceecCCHHhhc--CCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG----AKFEEDLDTML--PKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g----~~~~~~l~ell--~~aDvVv~~~p~~~~t~  107 (221)
                      .+|||||+|.||+..++.++.. +++|. ++|++....+ .....+    ...++++++++  .+.|+|++++|..  ++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~--~h   79 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS--LH   79 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG--GH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccch--hh
Confidence            4799999999999999998765 66766 5677543222 233444    34567999998  4689999999933  22


Q ss_pred             hcchHHHHhcCCCCCEEEEcCC--CCccCHHHHHHHHHhCCce
Q 027577          108 GMFDKDRIAKMKKGVLIVNNAR--GAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~sr--g~~vd~~al~~al~~g~i~  148 (221)
                      .-+   ....++.|.-++----  -.+-+.+.|.+..++.++.
T Consensus        80 ~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          80 VEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             HHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             cch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            222   3344556655543211  1223345577777777776

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.94  E-value=2.1e-05  Score=63.57  Aligned_cols=111  Identities=17%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEE--------cCCCCChhHH-------------------HhcCceecC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLE-------------------KETGAKFEE   84 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~--------d~~~~~~~~~-------------------~~~g~~~~~   84 (221)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|+++        |+.....+..                   ...+.+.+ 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-  110 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-
Confidence            4689999999999999999999999999998754        3332221111                   11122332 


Q ss_pred             CHHhhc-CCCCEEEEeCCCChhhhhcchHHHHhcCCC-CCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        85 ~l~ell-~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~-ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +.++++ .+||+++-|.     +.+.|+.+..+.++. ++-+|--+.-.++..++....|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchHHHHHHHHhcCCE
Confidence            223333 5799988664     356677777777753 4544444444455555655567766665

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.92  E-value=2.1e-05  Score=58.69  Aligned_cols=67  Identities=22%  Similarity=0.242  Sum_probs=48.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh-------cC----ceecCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------TG----AKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~-------~g----~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      +.+||+|||.|.+|..+|..+...+. ++..+|.++...+. +.+       .+    .....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46899999999999999988876664 79999986532211 111       11    1223566788999999999874

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.92  E-value=3.8e-05  Score=61.46  Aligned_cols=111  Identities=12%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CEEEEEccCH--HHHHHHHH------HccCCCeEEEEcCCCCC---------hh------------HH------------
Q 027577           37 KTVGTVGCGR--IGKLLLQR------LKPFNCNLLYHDRVKMD---------PQ------------LE------------   75 (221)
Q Consensus        37 ~~vgIIG~G~--iG~~iA~~------l~~~G~~V~~~d~~~~~---------~~------------~~------------   75 (221)
                      ++++++|.|.  ||..+++.      +...|..|+..|-++..         .+            ..            
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            3466788775  77777773      56778888887765311         00            00            


Q ss_pred             ----HhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           76 ----KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        76 ----~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                          ++.|+...++..|+++++|+|++|+|..+.+..++ ++....++++++++|++.........+.+.+.+..+.
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence                01235556889999999999999999666666666 6788999999999999999888888899999888777

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.91  E-value=3.4e-06  Score=64.32  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p~  102 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|+..+     .++.+.+      ...|+|+-+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            48899999999999999999999998 69999998766777888886422     1222221      127899888873


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ..     .-++.+..++++..++-++
T Consensus       107 ~~-----~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SE-----TLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEe
Confidence            21     1244567788888888775

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.91  E-value=6.6e-06  Score=69.30  Aligned_cols=92  Identities=9%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHc-cCCC-eEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      .-++++|||.|..++..++.+. -++. +|.+|++++...+.+ ++    .|+  ..+.+++++++.||+|+.|++ ++.
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCC
Confidence            3579999999999999988764 4665 599999976433322 21    243  457899999999999999886 444


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..++..   +.++||+.|..++.-
T Consensus       206 ~~Pv~~~---~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         206 YATIITP---DMLEPGMHLNAVGGD  227 (340)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCcccch---hhcCCCCEEeecccc
Confidence            4567765   357999999998753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.90  E-value=8.1e-06  Score=61.40  Aligned_cols=107  Identities=14%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             CEEEEEccCHHHHH-HHHHHccC-CCeEEEEcCCCCChh-HHHhcCce-ecCCHHhhcC-CCCEEEEeCCCChhhhhcch
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLLYHDRVKMDPQ-LEKETGAK-FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~-G~~V~~~d~~~~~~~-~~~~~g~~-~~~~l~ell~-~aDvVv~~~p~~~~t~~~i~  111 (221)
                      .||||||+|.+|+. ....++.. +.++.++|+++...+ .....++. .+.+.+++++ +.|+|++++|  +.++.-+-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp--~~~H~~~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAA--TDVHSTLA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSC--GGGHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccc--cccccccc
Confidence            58999999999976 56777665 567888888653333 33445543 4567888875 6899999999  33333333


Q ss_pred             HHHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCce
Q 027577          112 KDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       112 ~~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i~  148 (221)
                      ...++   .|. +++.-= --.+-+.+.|.++.++..+.
T Consensus        80 ~~al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLH---LGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccc---cccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333   333 444321 12233456677777766554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.90  E-value=2.1e-05  Score=58.39  Aligned_cols=96  Identities=15%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh-----cCceecCCHHhhcCCCCEEEEeCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE-----TGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~-----~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|+.+...+     ....     ..+.....-.+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            457899999999999999999876665  7999998642211     1111     112222233467889999999764


Q ss_pred             CChh---hh-hcc--hH-------HHHhcCCCCCEEEEcCC
Q 027577          102 LTEK---TR-GMF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~~~~---t~-~~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                      ....   ++ .++  +.       +.+....|.+++|+++.
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            3221   11 111  11       12344467899999843

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.88  E-value=1.6e-05  Score=61.18  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=36.6

Q ss_pred             ccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      +.+|+||++.|.| .|.||+.+|+.|...|++|++.+|+..
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            4689999999999 699999999999999999999999753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=3.8e-05  Score=57.85  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHhcCceecCCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+....+. ....+.....+..  ..++|+|+.|+|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence            57899999999999999999999997 69999997643332 3334554443332  3579999999983

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.85  E-value=4.5e-05  Score=55.98  Aligned_cols=97  Identities=24%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChhHHH-h---------cCcee-cCCHHhhcCCCCEEEEeCC--
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK-E---------TGAKF-EEDLDTMLPKCDIVVVNTP--  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~-~---------~g~~~-~~~l~ell~~aDvVv~~~p--  101 (221)
                      +||+|||.|.+|..+|..+...|.  ++..+|.++...+... .         ..... ..+..+.+++||+|+++.-  
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987764  7999998764322110 0         01111 1244567899999999863  


Q ss_pred             CChh-hh--------hcch--HHHHhcCCCCCEEEEcCCCCccCH
Q 027577          102 LTEK-TR--------GMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       102 ~~~~-t~--------~~i~--~~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                      ..+. ++        .++.  .+.+....|++++++++.  ++|.
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~  123 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDI  123 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHH
Confidence            2221 11        1110  012333458899999854  4443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.8e-05  Score=55.93  Aligned_cols=40  Identities=20%  Similarity=0.300  Sum_probs=35.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (221)
                      ...+.||||+|.|..|+.++..++.+|++++++|+++..+
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            4567799999999999999999999999999999976544

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.85  E-value=2.4e-05  Score=57.92  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---cCc--e-ecCCHHhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TGA--K-FEEDLDTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g~--~-~~~~l~ell~~aDvVv~~~p~~  103 (221)
                      |||+|||.|.+|..+|..+...|.  ++..+|..+...+     ..+.   .+.  . ...+. +.+++||+|+++....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEecccc
Confidence            799999999999999998876664  7999998643211     1111   111  1 22333 5579999999986532


Q ss_pred             h-------hhh--------hcch--HHHHhcCCCCCEEEEcCC
Q 027577          104 E-------KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~-------~t~--------~~i~--~~~~~~mk~ga~lIn~sr  129 (221)
                      .       .++        .++.  .+.+....|++++|+++.
T Consensus        81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            1       011        1111  122344578899999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=8.4e-06  Score=62.06  Aligned_cols=71  Identities=21%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH-hc----Cc-----eecCCHHhhcCCCCEEEEeCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GA-----KFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~-----~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .+++||+|.|+|.|..+++++..|...| +|.+++|+....+... ..    ..     ....+++..+..+|+|+.++|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3689999999999999999999998877 8999999754332211 11    10     123456677788999999999


Q ss_pred             CC
Q 027577          102 LT  103 (221)
Q Consensus       102 ~~  103 (221)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=5.7e-05  Score=60.15  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCC--------CCChhHHH----h-------cCceecCCHHhhcC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRV--------KMDPQLEK----E-------TGAKFEEDLDTMLP   91 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~--------~~~~~~~~----~-------~g~~~~~~l~ell~   91 (221)
                      .++.|+||.|-|+|++|+.+|+.|. ..|.+|++++.+        ........    .       .+.+.. +.++++.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~  105 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLE  105 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHT
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccc
Confidence            4689999999999999999999995 689998866532        11211111    1       112233 4566665


Q ss_pred             -CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEeeC
Q 027577           92 -KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (221)
Q Consensus        92 -~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lDV  154 (221)
                       +||+++-|.-     .+.|+.+....++- .+|+-.+-+.+ ..++ .+.|.+..|. .+=|.
T Consensus       106 ~~~DI~~PcA~-----~~~I~~~~a~~l~~-~~I~e~AN~p~-t~~a-~~~L~~rgI~-~~PD~  160 (234)
T d1b26a1         106 LDVDILVPAAL-----EGAIHAGNAERIKA-KAVVEGANGPT-TPEA-DEILSRRGIL-VVPDI  160 (234)
T ss_dssp             SCCSEEEECSC-----TTCBCHHHHTTCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE-EECHH
T ss_pred             cccceeecchh-----cccccHHHHHHhhh-ceEeecCCCCC-CHHH-HHHHHHCCeE-EechH
Confidence             8999988764     56789999888875 46777776665 5555 4677777776 44443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=7.7e-06  Score=61.30  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll~~aDvVv~~~p~~~~  105 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++.+.+.+++.|...+     .+..+    .....|.++.++.. ++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch
Confidence            3889999999999999999999999999999998766677777776421     12222    12334555665542 22


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +   + ...++.++++..++.++
T Consensus       106 ~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 A---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             H---H-HHHHTTEEEEEEEEECC
T ss_pred             H---H-HHHHHHhcCCcEEEEEE
Confidence            1   2 34567788888877774

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.81  E-value=2.8e-05  Score=57.53  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChh-HHHh-------cC--ceecCCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG--AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~g--~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ..+||+|||.|.+|..+|..|...|  -++..+|+.+...+ .+.+       .+  .....+.+ .+++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            4679999999999999999997766  47999998642211 0100       11  12234555 46899999998642


Q ss_pred             Chh---h--------hhcch--HHHHhcCCCCCEEEEcCC
Q 027577          103 TEK---T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~---t--------~~~i~--~~~~~~mk~ga~lIn~sr  129 (221)
                      ...   +        ..++.  .+.+..-.|.+++++++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            111   1        11111  122444567899999873

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.81  E-value=2e-05  Score=65.68  Aligned_cols=89  Identities=18%  Similarity=0.330  Sum_probs=66.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHcc-CCC-eEEEEcCCCCChhH----HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~-~G~-~V~~~d~~~~~~~~----~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      -++++|||.|..++..++.+.. +.. +|.+|+|++...+.    ....++....+.++.+..||+|+.++|.   +..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---cccc
Confidence            4689999999999999998854 555 69999997643322    2233455555778889999999999874   4456


Q ss_pred             chHHHHhcCCCCCEEEEcCCC
Q 027577          110 FDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~srg  130 (221)
                      +..+   .+++|+.++.++.-
T Consensus       202 ~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             BCGG---GCCTTCEEEECSCC
T ss_pred             cchh---hcCCCCeEeecCCc
Confidence            6543   57999999999853

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.80  E-value=0.00023  Score=53.19  Aligned_cols=96  Identities=10%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCC--hhH---HHh----c--CceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD--PQL---EKE----T--GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~---~~~----~--g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +|.|+||++|| ..++.++++..+..+|+++.++.+..-.  .+.   .++    .  .+....+++++++.+|+|....
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            47899999999 4578899999999999999999875322  111   111    1  2345679999999999998753


Q ss_pred             CCCh------h------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTE------K------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~------~------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      =...      +      ....++.+.++.+|++++|+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            1111      1      12345778888888888888753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.76  E-value=0.00014  Score=53.91  Aligned_cols=95  Identities=23%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             CCCCEEEEEc---cCHHHHHHHHHHccCCCeEEEEcCCC---CChhHHHhc--CceecCCHHhhcCCCCEEEEeCCCCh-
Q 027577           34 LEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTE-  104 (221)
Q Consensus        34 l~g~~vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~---~~~~~~~~~--g~~~~~~l~ell~~aDvVv~~~p~~~-  104 (221)
                      |.|+||++||   .|++.++++..+..+|+++..+-+..   .........  .+..+++++++++++|+|...--... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            5799999999   46799999999999999976554432   112222222  35566799999999999876432111 


Q ss_pred             ----------hhhhcchHHHHhcCCCCCEEEEcC
Q 027577          105 ----------KTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       105 ----------~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                                .....++.+.++.++++++|+.+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      011225667777777777777653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=3.4e-05  Score=56.62  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChh-----HHHhc----CceecCCHHhhcCCCCEEEEeCCC--C
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-----LEKET----GAKFEEDLDTMLPKCDIVVVNTPL--T  103 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~-----~~~~~----g~~~~~~l~ell~~aDvVv~~~p~--~  103 (221)
                      +||+|||.|.+|..+|..+...+  -++..+|..+...+     .....    ......+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999998876554  47999998642211     01100    112222334568999999998642  1


Q ss_pred             hh-hh-hcc--hH-------HHHhcCCCCCEEEEcCC
Q 027577          104 EK-TR-GMF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~-t~-~~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                      +. ++ .++  +.       +.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            11 11 111  11       23445578999999863

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.72  E-value=9.3e-05  Score=54.34  Aligned_cols=93  Identities=18%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCCh-hHHHhcC--------ceecCCHHhhcCCCCEEEEeCCCChh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-QLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-~~~~~~g--------~~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      +||+|||.|.+|..+|..+...+.  ++..+|..+... ..+.++.        ......-.+.+++||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999998876665  799999765332 1111111        11222334567899999998542221


Q ss_pred             ---hh-hcc--hH-------HHHhcCCCCCEEEEcCC
Q 027577          106 ---TR-GMF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 ---t~-~~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                         ++ .++  +.       +.+....|.+++++++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence               11 111  11       12344567899999865

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.71  E-value=0.00012  Score=51.91  Aligned_cols=100  Identities=12%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             CEEEEEc----cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG----~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      |+|+|||    -|..|..+.+.|+..|++|+.++++...     -.|...+.+++++=...|++++++| .+.+..++. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-   74 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-   74 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-----ccCccccccchhccccceEEEEEeC-HHHHHHHHH-
Confidence            6899999    4679999999999999999999875422     2467777899998888999999999 233334443 


Q ss_pred             HHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +..+ +....+++..+   .. .+++.+.+++..+.
T Consensus        75 ~~~~-~g~k~v~~~~g---~~-~~~~~~~a~~~gi~  105 (116)
T d1y81a1          75 EAVE-AGFKKLWFQPG---AE-SEEIRRFLEKAGVE  105 (116)
T ss_dssp             HHHH-TTCCEEEECTT---SC-CHHHHHHHHHHTCE
T ss_pred             HHHh-cCCceEEeccc---hh-hHHHHHHHHHcCCE
Confidence            3333 44456666543   23 44567777776665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1.7e-05  Score=59.17  Aligned_cols=89  Identities=22%  Similarity=0.265  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCH----HhhcCCCCEEEEeCCCChh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~~aDvVv~~~p~~~~  105 (221)
                      .|.+|.|+|.|.||...++.++..|.+|++.++++.+.+.++++|+..+     .+.    .+.-...|.++.+.. .+.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            4889999999999999999999999999999987766677777776432     122    222345666666655 232


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +    -...+..++++..++.++
T Consensus       106 ~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         106 A----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             H----HHHHHHHEEEEEEEEECC
T ss_pred             H----HHHHHHHhccCCceEecc
Confidence            2    245667788888888875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2e-05  Score=60.82  Aligned_cols=68  Identities=19%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVv~~~p~  102 (221)
                      ..|||.|+| .|.+|+.+++.|...|++|.++.|++.+.......+++.       .++++++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 699999999999999999999998653322222223321       23556789999999988753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.69  E-value=0.00015  Score=53.20  Aligned_cols=92  Identities=16%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhH-HHh---------c--CceecCCHHhhcCCCCEEEEeCCC-
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE---------T--GAKFEEDLDTMLPKCDIVVVNTPL-  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~-~~~---------~--g~~~~~~l~ell~~aDvVv~~~p~-  102 (221)
                      +||+|||.|.+|..+|..+...+. ++..+|..+...+. +.+         .  .+....+.+ .++++|+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence            699999999999999988876554 79999986532211 111         1  122334555 46899999998842 


Q ss_pred             -Chh-hh-hcc--hH-------HHHhcCCCCCEEEEcCC
Q 027577          103 -TEK-TR-GMF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 -~~~-t~-~~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                       .+. ++ .++  +.       +.+..-.|.++++.++.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence             221 11 111  11       12334467888888753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.69  E-value=1.2e-05  Score=60.24  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             CEEEEE-ccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           37 KTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        37 ~~vgII-G~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      |||+|| |.|.||+++|+.|...|++|.+++|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999 7999999999999999999999999753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.68  E-value=1.1e-05  Score=61.16  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC-----CCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~-----~aDvVv~~~p~~  103 (221)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.|+++.+.+.++++|...+     .+..+.++     ..|+|+-|+. +
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-~  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-S  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-C
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-c
Confidence            488999999999999999999999986 5567877666677778876322     22332221     2788888886 2


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +.    ..+..++.++++..++.++
T Consensus       107 ~~----~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         107 PE----ILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HH----HHHHHHHTEEEEEEEEECC
T ss_pred             HH----HHHHHHhcccCceEEEEEe
Confidence            22    2234567788888888775

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=3.6e-05  Score=58.54  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=64.6

Q ss_pred             CEEEEEccCHHHHH-HHHHHccCC--CeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--CCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKL-LLQRLKPFN--CNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~-iA~~l~~~G--~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDvVv~~~p~~~~t~~  108 (221)
                      .+|||||+|.+|+. .+..++..+  ++|. ++|+++...+ ..+..+. ..+.+++++++  +.|+|++++|.  .++.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~--~~h~   81 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV--ELNL   81 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG--GGHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc--cccc
Confidence            48999999999987 577777654  4655 5787653333 2334554 35689999985  58999999993  3333


Q ss_pred             cchHHHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCce
Q 027577          109 MFDKDRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       109 ~i~~~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i~  148 (221)
                      -+-...+   +.|. +++.-= --.+-+...|.+..++....
T Consensus        82 ~~~~~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          82 PFIEKAL---RKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHHHHHH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             ccccccc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            2333333   3443 334321 12233445577777665544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.67  E-value=3.1e-05  Score=61.01  Aligned_cols=107  Identities=18%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             CCEEEEEccCHHHHH-HHHHHccC-CCeEE-EEcCCCCChh-HHHhcCc-----eecCCHHhhcC--CCCEEEEeCCCCh
Q 027577           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-----KFEEDLDTMLP--KCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~G~iG~~-iA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-----~~~~~l~ell~--~aDvVv~~~p~~~  104 (221)
                      --+|||||+|.||+. ++..++.. +++|. ++|+++...+ .++..++     ..+++++++++  +.|+|++++|.  
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~--  110 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN--  110 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG--
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch--
Confidence            348999999999975 56666654 67765 6788654333 3344444     23578999985  58999999993  


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcC--CCCccCHHHHHHHHHhCCc
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~s--rg~~vd~~al~~al~~g~i  147 (221)
                      .++.-+   ....|+.|.-++.=-  -..+-+...|.+..++..+
T Consensus       111 ~~H~~~---~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         111 SLHAEF---AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             GGHHHH---HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             hhhhhH---HHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            333222   233344554444321  1223334445555554443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.64  E-value=0.00014  Score=55.00  Aligned_cols=89  Identities=17%  Similarity=0.065  Sum_probs=64.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|...+.+       .+...     ..+|+++-|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            48899999999999999999999998 5888898887788888888643211       12112     45799998887


Q ss_pred             CChhhhhcchHHHHhcCCCC-CEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~g-a~lIn~s  128 (221)
                       ++.+    ..+.+..++++ ..++-++
T Consensus       108 -~~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 -TAQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             -CHHH----HHHHHHTBCTTTCEEEECC
T ss_pred             -cchH----HHHHHHHhhcCCeEEEecC
Confidence             2222    24556777775 5666664

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.60  E-value=0.00018  Score=54.35  Aligned_cols=89  Identities=17%  Similarity=0.091  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec------CC-HHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE------ED-LDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~------~~-l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|...+      ++ .+++.     ...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            48899999999999999999999995 79999998888888888887532      11 11111     35888888876


Q ss_pred             CChhhhhcchHHHHhcCC-CCCEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMK-KGVLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk-~ga~lIn~s  128 (221)
                      ..+.    + ...+..+. .+..+|.++
T Consensus       109 ~~~~----~-~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         109 HLET----M-IDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CHHH----H-HHHHTTSCTTTCEEEECS
T ss_pred             chHH----H-HHHHHHhhcCCeEEEEEE
Confidence            2221    1 22333443 336666664

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=2.6e-05  Score=58.93  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh------hcCCCCEEEEeCCCChhhh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT------MLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e------ll~~aDvVv~~~p~~~~t~  107 (221)
                      .|++|.|.|. |.+|...++.++.+|++|++.++++...+.++++|+..+-+..+      .-..+|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            4889999995 99999999999999999999988776677778888753322222      1245888887664  11  


Q ss_pred             hcchHHHHhcCCCCCEEEEcC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~s  128 (221)
                        + .+.++.++++..++.++
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              2 45678888888888875

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=0.00048  Score=51.18  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=64.5

Q ss_pred             CCCCEEEEEc-c-CHHHHHHHHHHccCCCeEEEEcCCCC-C-hh-------HHHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVG-C-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQ-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG-~-G~iG~~iA~~l~~~G~~V~~~d~~~~-~-~~-------~~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      |.|++|++|| . .++.++++..+..+|+++.+..|..- . .+       .+.+.+  +...+++++.++.+|+|....
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            6799999999 3 68999999999999999999987532 1 11       111222  445689999999999998865


Q ss_pred             CCChh-------------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTEK-------------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~~-------------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      -....             .............+++++|+.+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32211             11122334444567788888764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=0.00022  Score=56.79  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHc-cCCCeEEEEcCCCC--------ChhHH----Hhc-------CceecCCHHhhc-C
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKM--------DPQLE----KET-------GAKFEEDLDTML-P   91 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~-~~G~~V~~~d~~~~--------~~~~~----~~~-------g~~~~~~l~ell-~   91 (221)
                      .|.|+||.|-|+|++|..+|+.|. ..|.+|+....+..        ..+..    .+.       +...+ +.++++ .
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence            499999999999999999999985 68999876643221        11111    111       23333 455655 5


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +||+++-|.-     .+.|+.+....++- .+|+-.+-+.+ ..++ .+.|.+..|.
T Consensus       108 ~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~-t~ea-~~~L~~rgI~  156 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPV-TPEA-DEILFEKGIL  156 (239)
T ss_dssp             CCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence            7999998875     46677777777753 56666667665 4555 4667777666

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.56  E-value=0.00021  Score=52.93  Aligned_cols=66  Identities=21%  Similarity=0.257  Sum_probs=44.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-HHHh-------cCce---ecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE-------TGAK---FEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-~~~~-------~g~~---~~~~l~ell~~aDvVv~~~p  101 (221)
                      ..||+|||.|.+|..+|..+...+. ++..||..+...+ .+.+       .+..   ...+..+.++++|+|+++..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            4699999999999999988876664 6999998653321 1110       1111   11234566789999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=4.7e-05  Score=50.25  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      |||||+|.|..|+.++...+.+|+++.++|+...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999998654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.51  E-value=0.00011  Score=55.92  Aligned_cols=65  Identities=23%  Similarity=0.321  Sum_probs=43.1

Q ss_pred             EEEEEccCHHHHHHHHHHccC-CCeEEEEc-CCCCChh-HH-----------------HhcCceecCCHHhhcCCCCEEE
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQ-LE-----------------KETGAKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d-~~~~~~~-~~-----------------~~~g~~~~~~l~ell~~aDvVv   97 (221)
                      ||||.|+|+||+.+++.+... +++|++++ +.+.... ..                 .+.++....+++++.+++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999754 57877765 4332111 01                 1112222345667777899999


Q ss_pred             EeCCC
Q 027577           98 VNTPL  102 (221)
Q Consensus        98 ~~~p~  102 (221)
                      -|+|.
T Consensus        83 ecTG~   87 (178)
T d1b7go1          83 DTTPN   87 (178)
T ss_dssp             ECCST
T ss_pred             ECCCC
Confidence            99883

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=0.00012  Score=53.78  Aligned_cols=92  Identities=18%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHH---hcC----ceecCCHHhhcCCCCEEEEeCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~---~~g----~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      +||+|||.|.+|..+|..+...|.  ++..+|..+...+     ...   ..+    +....+. +.+++||+|+++...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            689999999999999998876664  6999997642211     100   011    1223344 678999999998642


Q ss_pred             --Chh---------hhhcch--HHHHhcCCCCCEEEEcCC
Q 027577          103 --TEK---------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 --~~~---------t~~~i~--~~~~~~mk~ga~lIn~sr  129 (221)
                        .+.         +..++.  .+.+....|.+++++++.
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence              221         111111  122444567899999876

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.49  E-value=0.00055  Score=55.94  Aligned_cols=112  Identities=21%  Similarity=0.299  Sum_probs=74.2

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC--------CChhHHHh----cCc------eecCCHHhhc-CC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLEKE----TGA------KFEEDLDTML-PK   92 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~--------~~~~~~~~----~g~------~~~~~l~ell-~~   92 (221)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++++.+.        ...+...+    .+.      ... +.++++ ..
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~  110 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVD  110 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc-CCcccccCC
Confidence            47999999999999999999999999999988765321        12222211    110      111 223444 47


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~~a~lD  153 (221)
                      ||+++-|.-     .+.|+.+....++- .+|+-.+.+++ ..++ .+.|.+..|. .+=|
T Consensus       111 ~DIliPaA~-----~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~-viPD  162 (293)
T d1hwxa1         111 CDILIPAAS-----EKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIM-VIPD  162 (293)
T ss_dssp             CSEEEECSS-----SSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE-EECH
T ss_pred             ccEEeeccc-----cccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCE-EeCh
Confidence            999998864     56677777777754 47777777775 5555 4667777666 3444

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00063  Score=50.93  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEccC-HHHHHHHHHHccCCCeEEEEcCCCCCh--h-------HHHhcC--ceecCCHHhhcCCCCEEEEeC
Q 027577           33 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP--Q-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        33 ~l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~~--~-------~~~~~g--~~~~~~l~ell~~aDvVv~~~  100 (221)
                      +|.|+||++||=| ++.++++..+..+|+++.++.+....+  +       ...+.|  +....++++.++.+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999954 677888888999999999988753221  1       111222  456689999999999999876


Q ss_pred             CCChhh------------hhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTEKT------------RGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~~t------------~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      -.....            ...++.+.++.++++++|+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            432211            1224566777778888777753

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.48  E-value=0.00044  Score=50.14  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CCCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +-|+|+|||.    +..|..+++.|+..|+++..+.+++...+   -.|...+.++.++-...|++++++| .+....++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v   87 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHL   87 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEecc-HHHHHHHH
Confidence            4679999995    78999999999999999999987543222   2466677889998888999999999 33444444


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      .+ .. .+...++++..+   ..+++ +.+..++..+.
T Consensus        88 ~~-~~-~~g~k~i~~q~G---~~~~e-~~~~a~~~Gi~  119 (136)
T d1iuka_          88 PE-VL-ALRPGLVWLQSG---IRHPE-FEKALKEAGIP  119 (136)
T ss_dssp             HH-HH-HHCCSCEEECTT---CCCHH-HHHHHHHTTCC
T ss_pred             HH-HH-hhCCCeEEEecC---ccCHH-HHHHHHHcCCE
Confidence            43 33 345667887654   34554 45555555554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.2e-05  Score=57.64  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p~  102 (221)
                      .|.+|.|+|. |.+|....+.++.+|++|++.++++.+.+.++++|+..+     .++.+.+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            5889999995 999999999999999999998876655666777776432     2232222      23677776654 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       ..    .-...+..++++..++.++.
T Consensus       107 -~~----~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         107 -NV----NLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             -HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             -HH----HHHHHHhccCCCCEEEEEec
Confidence             11    22446677888888888753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.43  E-value=0.00013  Score=54.63  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-HHHhc-------C---ceecCCHHhhcCCCCEEEE
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------G---AKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-~~~~~-------g---~~~~~~l~ell~~aDvVv~   98 (221)
                      ..+..+||+|||.|++|..+|..+...|.  ++..+|.++...+ .+.++       +   .....+ .+.+++||+|++
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVi   94 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVV   94 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEE
Confidence            35678899999999999999999988876  7999998642211 11111       1   112233 456889999999


Q ss_pred             eCCCC--h-hhhh-cc--hH-------HHHhcCCCCCEEEEcCC
Q 027577           99 NTPLT--E-KTRG-MF--DK-------DRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        99 ~~p~~--~-~t~~-~i--~~-------~~~~~mk~ga~lIn~sr  129 (221)
                      +....  + +++- ++  +.       ..+....+++++|+++.
T Consensus        95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            76422  2 1111 11  11       12333467889998864

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=7.3e-05  Score=54.31  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCC-------ChhHHH----hcCceecCCHHhhcC
Q 027577           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKM-------DPQLEK----ETGAKFEEDLDTMLP   91 (221)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~----~~g~~~~~~l~ell~   91 (221)
                      .+.+++|+|+|+          ++-...+++.|...|++|.+|||.-.       ..+...    ..+...+++++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467899999995          35788899999999999999997311       111111    112334579999999


Q ss_pred             CCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEc
Q 027577           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus        92 ~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .+|+|+++++.. +    + .+....++++.+|+|+
T Consensus        90 ~~D~ivi~t~h~-~----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDE-L----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCG-G----G-HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCH-H----H-HHHHHHhcCCCEEEEC
Confidence            999999999832 2    2 2344567778889987

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=0.00011  Score=53.99  Aligned_cols=96  Identities=23%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcC-c---------eecCCHHhhcCCCCEEEEeCCC-
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETG-A---------KFEEDLDTMLPKCDIVVVNTPL-  102 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-~---------~~~~~l~ell~~aDvVv~~~p~-  102 (221)
                      .||+|||. |.+|..+|..+...|.  ++..+|......+ +.++. .         ....+..+.++.||+|+++... 
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            48999995 9999999999987776  5889997542221 21211 1         1124557888999999998542 


Q ss_pred             -Ch-hhhh-cc--hH-------HHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 -TE-KTRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 -~~-~t~~-~i--~~-------~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                       .+ +++. ++  +.       +.+....|.++++.++.  ++|.
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence             22 1111 11  11       12333477899999864  4554

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=0.00066  Score=49.42  Aligned_cols=102  Identities=12%  Similarity=0.109  Sum_probs=70.9

Q ss_pred             CCCEEEEEcc----CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~----G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      +-|+|+|||.    +..|..+++.|+.+|++|+.+++...     .-.|...+.+++++-...|++++++| .+.+..++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~-----~i~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~   91 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE-----EVLGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV   91 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-----EETTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc-----ccCCCcccccccccCccceEEEEEeC-HHHHHHHH
Confidence            4689999995    57999999999999999999998542     12467778899998889999999999 22233333


Q ss_pred             hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      . +..+ +....+++..+   ..+++ +.+.+++..+.
T Consensus        92 ~-e~~~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi~  123 (139)
T d2d59a1          92 E-QAIK-KGAKVVWFQYN---TYNRE-ASKKADEAGLI  123 (139)
T ss_dssp             H-HHHH-HTCSEEEECTT---CCCHH-HHHHHHHTTCE
T ss_pred             H-HHHH-hCCCEEEEecc---ccCHH-HHHHHHHCCCE
Confidence            3 3332 34556666554   23444 44555555554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00023  Score=48.02  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             CCEEEEEccCHHHH-HHHHHHccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~G~iG~-~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p  101 (221)
                      .++|=+||.|.+|. ++|+.|+..|++|.++|+.... .+.+++.|++.. ..-.+.+.++|+|+....
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence            36889999999998 6799999999999999986422 234566787543 223355678999877654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00018  Score=54.30  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             CCEEEEEccCHHHHHHHH---HHc--cC-CCeEEEEcCCCCChhH--------HHhc----CceecCCHHhhcCCCCEEE
Q 027577           36 GKTVGTVGCGRIGKLLLQ---RLK--PF-NCNLLYHDRVKMDPQL--------EKET----GAKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~---~l~--~~-G~~V~~~d~~~~~~~~--------~~~~----g~~~~~~l~ell~~aDvVv   97 (221)
                      ++||+|||.|++|...+-   .++  .+ +-++..+|.++...+.        ....    .+....+.++.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   332  22 4589999987533221        1111    1334578999999999999


Q ss_pred             EeCC
Q 027577           98 VNTP  101 (221)
Q Consensus        98 ~~~p  101 (221)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.38  E-value=0.0004  Score=52.26  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=51.7

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|...+-+       .++..     ...|+++.++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            48899999999999999999999997 6999999887788888888753311       22222     24688887775

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.35  E-value=5.4e-05  Score=56.92  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      .|.+|.|+|.|.+|...++.++.+|. .|++.++++.+.+.+++.|...+     ++.++..     ...|+|+.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            48899999999999999999998886 57788887666677777775422     1122222     2378888888722


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .+    -+..+..++++..++.++-
T Consensus       112 -~~----~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         112 -AT----VDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             -HH----HHHGGGGEEEEEEEEECCC
T ss_pred             -hH----HHHHHHHHhCCCEEEEEeC
Confidence             21    2345677888888888754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=9.3e-05  Score=55.80  Aligned_cols=89  Identities=12%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDvVv~~~p~  102 (221)
                      .|.+|.|.| .|.+|...++.++.+|++|++..+++...+.+++.|+..+     .++.+.+      ...|+|+-++. 
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g-  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc-
Confidence            378999988 5999999999999999999988876555666777775422     2332322      34788888776 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+     ...+.++.++++..+|+++.
T Consensus       104 ~~-----~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         104 GE-----AIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             TH-----HHHHHHHTEEEEEEEEECSC
T ss_pred             ch-----HHHHHHHHhcCCCEEEEEcc
Confidence            11     12346678888888888754

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=0.00023  Score=52.66  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             CCCEEEEEc---cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG---~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .|.+|++||   .++++++++..+..+|+++.+..|..-.++   ...+....++++.++.+|+|.....
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r~   68 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLRI   68 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeEE
Confidence            589999999   478999999999999999988887542221   2234455789999999999976543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.31  E-value=0.00022  Score=53.88  Aligned_cols=66  Identities=23%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-CeEEEEc-CCCCCh-hHHHhcC------------------ceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHD-RVKMDP-QLEKETG------------------AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d-~~~~~~-~~~~~~g------------------~~~~~~l~ell~~aDv   95 (221)
                      ++|||-|+|+||+.+++.+...+ ++|...+ +.+... ..+...+                  +....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            48999999999999999886554 6766554 433211 1111112                  1111245566778899


Q ss_pred             EEEeCCC
Q 027577           96 VVVNTPL  102 (221)
Q Consensus        96 Vv~~~p~  102 (221)
                      |+-|+|.
T Consensus        82 ViEcTG~   88 (171)
T d1cf2o1          82 VIDCTPE   88 (171)
T ss_dssp             EEECCST
T ss_pred             EEEccCC
Confidence            9888884

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=0.00024  Score=48.58  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             CCCEEEEEccCHHH-HHHHHHHccCCCeEEEEcCCCC-ChhHHHhcCceec-CCHHhhcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIG-KLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE-EDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG-~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~-~~l~ell~~aDvVv~~~p  101 (221)
                      ..++|=+||.|.+| .++|+.|+..|++|.++|.... ..+...+.|+... ....+.+++.|+|+....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence            46899999999999 5569999999999999998542 2234455676532 233455688998877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.29  E-value=0.00033  Score=49.96  Aligned_cols=86  Identities=17%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhh----cCCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDvVv~~~p~~~~t~~  108 (221)
                      |.+-|+|+|.+|+.+++.|+..  +|.+.+..+...+.....|+..+    .+.+.+    +.+|+.++++++....+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            4578999999999999999754  56677776655555555665432    222222    57899999998854433  


Q ss_pred             cchHHHHhcCCCCCEEEE
Q 027577          109 MFDKDRIAKMKKGVLIVN  126 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn  126 (221)
                      +.-....+.+.|...++-
T Consensus        77 ~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          77 IHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHHCSSSCEEE
T ss_pred             HHHHHHHHHHCCCceEEE
Confidence            333334455666644443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00074  Score=49.52  Aligned_cols=97  Identities=25%  Similarity=0.329  Sum_probs=57.4

Q ss_pred             CEEEEEc-cCHHHHHHHHHHc---cCCCeEEEEcCCCCChhHHHhc-Cc------e--ecCCHHhhcCCCCEEEEeCCC-
Q 027577           37 KTVGTVG-CGRIGKLLLQRLK---PFNCNLLYHDRVKMDPQLEKET-GA------K--FEEDLDTMLPKCDIVVVNTPL-  102 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~---~~G~~V~~~d~~~~~~~~~~~~-g~------~--~~~~l~ell~~aDvVv~~~p~-  102 (221)
                      +||+||| .|++|..+|..|.   .++-++..+|..+.....+.++ ..      .  ...+..+.+++||+|+++.-. 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            6899999 5999999998764   3456899999754221111111 11      1  112334568899999998632 


Q ss_pred             -Chh-hh-hcc--hH-------HHHhcCCCCCEEEEcCCCCccCH
Q 027577          103 -TEK-TR-GMF--DK-------DRIAKMKKGVLIVNNARGAIMDT  135 (221)
Q Consensus       103 -~~~-t~-~~i--~~-------~~~~~mk~ga~lIn~srg~~vd~  135 (221)
                       .+. ++ .++  +.       +.+....|++++|.++.  ++|.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~  123 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNT  123 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchH
Confidence             221 11 111  11       23344568899998864  4553

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.27  E-value=0.0006  Score=54.49  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             cCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++|+||++.|.| .+.||+++|+.|.+.|++|++.++++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999 57899999999999999999999864

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00011  Score=55.12  Aligned_cols=65  Identities=8%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             CEEEEEccCHHHHHHHHHH-----ccC-CCeEEEEcCCCCChhHHHh---------cCceecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVGCGRIGKLLLQRL-----KPF-NCNLLYHDRVKMDPQLEKE---------TGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l-----~~~-G~~V~~~d~~~~~~~~~~~---------~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      +||+|||.|++|.+.+-..     ..+ +-++..+|..+...+...+         ..+....+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            5899999999887766321     112 3579999986533221111         112344678899999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00014  Score=53.41  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      .+|.||++.|||.|.+|..-++.|..+|++|.++++.
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4799999999999999999999999999999999763

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=0.00066  Score=48.77  Aligned_cols=108  Identities=15%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcc----CHHHHHHHHHHccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           34 LEGKTVGTVGC----GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        34 l~g~~vgIIG~----G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.++++...     -.|...+.+++++=...|++++++| .+.+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~   79 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD   79 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----cCCeEeecchhhcCCCCceEEEecC-hHHhHH
Confidence            56789999996    889999999998766 689999986422     2477778899998889999999999 344444


Q ss_pred             cchHHHHhcCCCCCEEEEcCCCCc-----cCHHHHHHHHHhCCce
Q 027577          109 MFDKDRIAKMKKGVLIVNNARGAI-----MDTQAVVDACSSGHIA  148 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~srg~~-----vd~~al~~al~~g~i~  148 (221)
                      ++. +..+.=-+.++++..+-++.     ..+++|.+..++..+.
T Consensus        80 ~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          80 TLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            443 33322223344444333332     1233455555555444

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.25  E-value=0.00017  Score=52.92  Aligned_cols=95  Identities=14%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCChh-----HHHh---cC---ceecCCHHhhcCCCCEEEEeCCC-
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TG---AKFEEDLDTMLPKCDIVVVNTPL-  102 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g---~~~~~~l~ell~~aDvVv~~~p~-  102 (221)
                      .||+|||.|++|..+|..+...|.  ++..+|..+...+     ....   .+   +....+. +.+++||+|+++.-. 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            489999999999999998876665  7999998652211     1110   01   1223444 458899999998642 


Q ss_pred             -Ch-hhh-hcc--hH-------HHHhcCCCCCEEEEcCCCCccC
Q 027577          103 -TE-KTR-GMF--DK-------DRIAKMKKGVLIVNNARGAIMD  134 (221)
Q Consensus       103 -~~-~t~-~~i--~~-------~~~~~mk~ga~lIn~srg~~vd  134 (221)
                       .+ +++ .++  +.       ..+....|+++++.++  .++|
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvD  122 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVD  122 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchH
Confidence             11 111 111  11       1234456788998876  4455

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.24  E-value=0.0004  Score=52.46  Aligned_cols=65  Identities=29%  Similarity=0.331  Sum_probs=41.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEE-cCCCCCh-hHHHhcC------------------ceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDP-QLEKETG------------------AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~-~~~~~~g------------------~~~~~~l~ell~~aDv   95 (221)
                      .||||.|+|+||+.+++.+... .++|+.+ |..+... ..+...+                  .....++.++.+++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            5899999999999999988654 4676655 4443211 1122222                  1122356666778888


Q ss_pred             EEEeCC
Q 027577           96 VVVNTP  101 (221)
Q Consensus        96 Vv~~~p  101 (221)
                      |+=|+|
T Consensus        83 ViEcTG   88 (172)
T d2czca2          83 IVDATP   88 (172)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            888887

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00015  Score=54.30  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC--eEEEEcCCCCCh-----hHHH---hcCc---eecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-----QLEK---ETGA---KFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-----~~~~---~~g~---~~~~~l~ell~~aDvVv~~   99 (221)
                      .+...||+|||.|.+|..+|..+...|.  ++..+|.+....     +...   ..+.   ....+. +.+++||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            4566799999999999999999987765  799999864221     1111   0111   122344 456899999998


Q ss_pred             CCC--Ch-hhh-hcc--hHHH-------HhcCCCCCEEEEcCC
Q 027577          100 TPL--TE-KTR-GMF--DKDR-------IAKMKKGVLIVNNAR  129 (221)
Q Consensus       100 ~p~--~~-~t~-~~i--~~~~-------~~~mk~ga~lIn~sr  129 (221)
                      ...  .+ +++ .++  +.+.       +....+++++++++.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            642  11 111 111  1111       223467899999875

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.18  E-value=0.00073  Score=49.82  Aligned_cols=68  Identities=21%  Similarity=0.323  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcc---CHHHHHHHHHHccCCCeEEEEcCCCCC-h-h---HHHhc--CceecCCHHhhcCCCCEEEEeCC
Q 027577           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMD-P-Q---LEKET--GAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        34 l~g~~vgIIG~---G~iG~~iA~~l~~~G~~V~~~d~~~~~-~-~---~~~~~--g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      |.|+||+|||=   +++.++++..+..+|+++.++.|.... . +   .+++.  .+....+++++++.+|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            78999999994   899999999999999999998875321 1 1   12222  23456799999999999887654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.0014  Score=49.79  Aligned_cols=96  Identities=13%  Similarity=0.110  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEc-c-CHHHHHHHHHHccCCCeEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVG-C-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG-~-G~iG~~iA~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .|.|.||++|| . -++.++++..+..+|+++.+..|..-  ..+.       ....+  +....++++.++.+|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            37899999999 4 58999999999999999999998531  1111       11122  44568999999999999875


Q ss_pred             CCCCh----h----------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 TPLTE----K----------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~p~~~----~----------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .=.+.    .          ...+.........+++++|+.+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            42111    0          01222344555678889988876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.14  E-value=0.00071  Score=50.35  Aligned_cols=85  Identities=19%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...++.++.+|. .|++.++++...+.++++|...+       ++.++.+     ..+|+|+-++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            48899999999999999999999996 57778887777778888886432       1222222     34788888875


Q ss_pred             CChhhhhcchHHHHhcCCCCCEE
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLI  124 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~l  124 (221)
                      . +.    ..+..+..+++|..+
T Consensus       108 ~-~~----~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2         108 N-VK----VMRAALEACHKGWGV  125 (176)
T ss_dssp             C-HH----HHHHHHHTBCTTTCE
T ss_pred             C-HH----HHHHHHHhhcCCcee
Confidence            2 22    223345556665333

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.10  E-value=0.0013  Score=48.29  Aligned_cols=90  Identities=18%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccC----CCeEEEEcCCCCChhH---HHhcCceecCCHHhhcCCCCEEEEeCCCChhhhh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPF----NCNLLYHDRVKMDPQL---EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~----G~~V~~~d~~~~~~~~---~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~  108 (221)
                      +|||||| .|..|+.+.+.|.+.    ..++..+..+....+.   ...........-.+.++++|+|++|+|... + .
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s-~   78 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-T-E   78 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-H-H
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-H-H
Confidence            5899999 699999999977542    2456555433211111   001111111122355789999999999322 2 2


Q ss_pred             cchHHHHhcCCCCCEEEEcCC
Q 027577          109 MFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       109 ~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      -+.....+ -...+++|+.|.
T Consensus        79 ~~~~~l~~-~g~~~~VIDlSs   98 (147)
T d1mb4a1          79 KVYPALRQ-AGWKGYWIDAAS   98 (147)
T ss_dssp             HHHHHHHH-TTCCSEEEESSS
T ss_pred             HHhHHHHH-cCCceEEEeCCc
Confidence            22222222 233467888874

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=4.9e-05  Score=57.21  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcchH
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i~~  112 (221)
                      .+|||||+|.||+..++.++...  ..+.+++..... +.....+.. ..+++++++  +.|+|++++|  +.++.-+..
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp--~~~H~~~~~   83 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-ELGSLDEVR-QISLEDALRSQEIDVAYICSE--SSSHEDYIR   83 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-CCCEETTEE-BCCHHHHHHCSSEEEEEECSC--GGGHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-HHHHhhccC-cCCHHHHHhCCCcchhhhccc--ccccccccc
Confidence            48999999999999998887643  113333321111 111112233 347889885  5789999999  333333333


Q ss_pred             HHHhcCCCCC-EEEEcC-CCCccCHHHHHHHHHhCCce
Q 027577          113 DRIAKMKKGV-LIVNNA-RGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       113 ~~~~~mk~ga-~lIn~s-rg~~vd~~al~~al~~g~i~  148 (221)
                      ..++   .|. +++.-= .-.+-+.+.|.+..++.+..
T Consensus        84 ~al~---~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          84 QFLQ---AGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHH---TTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccc---cchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            3443   333 444421 22344556677665555544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.06  E-value=0.00012  Score=54.62  Aligned_cols=89  Identities=22%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH-Hhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL-DTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l-~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++...+.++++|...+     .++ ++..     ...|+++-|+.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            3789999995 9999999999998885 79999987766677777775321     122 2222     23788888876


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                       .+.+.    +..+..++++..++.++
T Consensus       107 -~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 -SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             -cchHH----HhhhhhcccCCEEEEec
Confidence             22221    23466788888888774

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.04  E-value=0.0019  Score=47.03  Aligned_cols=92  Identities=11%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCC--eEEEEcCCCCCh-------hHHHh--c--Cce-ecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-------QLEKE--T--GAK-FEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-------~~~~~--~--g~~-~~~~l~ell~~aDvVv~~~p  101 (221)
                      .||+||| .|.+|..+|..+...+.  ++..+|......       +....  .  ... ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            4899999 69999999999977665  699999632111       11110  1  111 12344 44689999999854


Q ss_pred             C--Chh-h--------hhcch--HHHHhcCCCCCEEEEcCC
Q 027577          102 L--TEK-T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       102 ~--~~~-t--------~~~i~--~~~~~~mk~ga~lIn~sr  129 (221)
                      .  .+. +        ..++.  .+.+....|+++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            2  221 1        11111  123445567888888853

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.02  E-value=0.0014  Score=48.81  Aligned_cols=67  Identities=21%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.++++.+.+.+++.|....       +..++..     ...|+++-+..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            48999999999999999999999985 78999988877778888775422       1122211     24788877775

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0012  Score=48.23  Aligned_cols=86  Identities=13%  Similarity=0.093  Sum_probs=54.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh----hHHHhcCceec----CCHH----hhcCCCCEEEEeCCCChh
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~----~~l~----ell~~aDvVv~~~p~~~~  105 (221)
                      .|-|+|+|.+|+.+++.|...|.+|++.+..+...    +.....++..+    .+.+    .-+++||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            48899999999999999999999999998765321    11222344322    1222    124789999999985443


Q ss_pred             hhhcchHHHHhcCCCCCEEE
Q 027577          106 TRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lI  125 (221)
                      +  +......+.+.+...+|
T Consensus        85 n--~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCEE
T ss_pred             H--HHHHHHHHHhCCCCceE
Confidence            3  22233344455554343

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0024  Score=46.66  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccC---C-CeEEEEcCCCCC---hhHHHhcCc-eecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPF---N-CNLLYHDRVKMD---PQLEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~---G-~~V~~~d~~~~~---~~~~~~~g~-~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      |+|||||. |.+|+.+.+.|...   - .++..+..+...   ......... ....+ .+.++++|++++++|...  .
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~-~~~~~~~DivF~a~~~~~--s   78 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD-LEALKALDIIVTCQGGDY--T   78 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC-HHHHHTCSEEEECSCHHH--H
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc-hhhhhcCcEEEEecCchH--H
Confidence            58999995 99999999866432   2 356656543211   111111111 11112 235689999999999322  2


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCc-----------cCHHHHHHHHHhC
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAI-----------MDTQAVVDACSSG  145 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~-----------vd~~al~~al~~g  145 (221)
                      ..+..... .-+.+.++|+.|..-=           |+.+.|..++++|
T Consensus        79 ~~~~~~~~-~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          79 NEIYPKLR-ESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             HHHHHHHH-HTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHH-hcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            22222222 2233467888874321           2445566666653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.87  E-value=0.00055  Score=52.54  Aligned_cols=94  Identities=16%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVv~~~p~  102 (221)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|...+     .++.    ++.  ..+|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            38899999999999999999988887 68899988766777888876543     1221    222  247888887752


Q ss_pred             Chh--hhh--------cchHHHHhcCCCCCEEEEcC
Q 027577          103 TEK--TRG--------MFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       103 ~~~--t~~--------~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ...  ...        ..-+..+..++++..++-++
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            110  000        01233455566766666664

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.84  E-value=0.00075  Score=50.82  Aligned_cols=90  Identities=20%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec-----CC-HHhhc-----CCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTML-----PKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~-l~ell-----~~aDvVv~~~p~  102 (221)
                      .|++|.|.|. |.+|...++.++..|++|++..+++.+.+.+++.|...+     .+ .++.+     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            4899999997 779999999999999999999887655667777775421     11 22222     34899998886 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~srg  130 (221)
                       .+    .-++.++.++++..++.++..
T Consensus       108 -~~----~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GE----FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HH----HHHHHGGGEEEEEEEEECCCG
T ss_pred             -ch----hhhhhhhhccCCCeEEeecce
Confidence             22    234678889999999998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.81  E-value=0.0022  Score=51.64  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=42.2

Q ss_pred             HHHcCCCccCcc-cCcccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           16 QVISGEWNVAGV-AYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        16 ~~~~g~w~~~~~-~~~~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .++...|..... ..+..+|+||++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_           4 ALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             HHHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            455556654321 1233589999999999 68999999999999999999999864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.79  E-value=0.0017  Score=47.52  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=43.0

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh-------hHHHh---c--Ccee---cCCHHhhcCCCCEEEE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP-------QLEKE---T--GAKF---EEDLDTMLPKCDIVVV   98 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~-------~~~~~---~--g~~~---~~~l~ell~~aDvVv~   98 (221)
                      +||+|||. |.+|..+|..+...|.  ++..+|..+...       +....   .  ....   ..+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999988774  799999854211       11110   0  1111   1223457889999999


Q ss_pred             eC
Q 027577           99 NT  100 (221)
Q Consensus        99 ~~  100 (221)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.0024  Score=45.67  Aligned_cols=84  Identities=18%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEE-EcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHH
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLY-HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~  114 (221)
                      +||+|+|+ |+||+.+++.+...|+++.+ +|++                 ..+.+..+|+|+=-.. .+.+...+.   
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------~~~~~~~~DVvIDFS~-p~~~~~~l~---   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------GVEELDSPDVVIDFSS-PEALPKTVD---   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------EEEECSCCSEEEECSC-GGGHHHHHH---
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------cHHHhccCCEEEEecC-HHHHHHHHH---
Confidence            58999996 99999999999988988653 4432                 1233467898876543 122222221   


Q ss_pred             HhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577          115 IAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (221)
Q Consensus       115 ~~~mk~ga~lIn~srg~~vd~~al~~al  142 (221)
                       ..++.+.-+|-.+.|=--+..+.++.+
T Consensus        60 -~~~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          60 -LCKKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             -HHHHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             -HHHhcCCCEEEEcCCCCHHHHHHHHHH
Confidence             223456677777777433333444443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00083  Score=50.15  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCc
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (221)
                      .|++|.|.| .|.+|...++.++..|++|++.++++.+.+.++++|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa   74 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA   74 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence            488999995 5669999999999999999999987665666666664

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.00099  Score=49.85  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc---------CCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---------PKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---------~~aDvVv~~~p~~  103 (221)
                      ..|.+|.|-| .|.+|....+.++.+|++|++..++..+.+.++++|...+-+.++..         +..|+|+-++-  
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg--   99 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG--   99 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc--
Confidence            3467899998 59999999999999999999999888788888888876443333321         23777776664  


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          +-.-.+.+..++++..++.++.
T Consensus       100 ----g~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         100 ----GKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             ----THHHHHHHTTEEEEEEEEECCC
T ss_pred             ----HHHHHHHHHHhccCceEEEeec
Confidence                1233567888999998888763

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0026  Score=46.94  Aligned_cols=94  Identities=18%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcc---CHHHHHHHHHHccCCC-eEEEEcCCCCC-h----hHHHhcC--ceecCCHHhhcCCCCEEEEeCCC
Q 027577           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMD-P----QLEKETG--AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        34 l~g~~vgIIG~---G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~----~~~~~~g--~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      +.|.+|++||=   |++.++++..+..+|. .+.+..+.... .    +.++..+  +....+++++++++|+|....-.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            68999999994   7799999999999975 45666554321 1    1223333  34567899999999999875432


Q ss_pred             Chh----------hhhcchHHHHhcCCCCCEEEEc
Q 027577          103 TEK----------TRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       103 ~~~----------t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      .+.          ....++.+.++.++++++|..+
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            221          0112244555666666666654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.73  E-value=0.0016  Score=48.76  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=42.3

Q ss_pred             CEEEEEccCHHH--HHHHHHHcc---CC-CeEEEEcCCCCCh--hHH--------HhcC----ceecCCHHhhcCCCCEE
Q 027577           37 KTVGTVGCGRIG--KLLLQRLKP---FN-CNLLYHDRVKMDP--QLE--------KETG----AKFEEDLDTMLPKCDIV   96 (221)
Q Consensus        37 ~~vgIIG~G~iG--~~iA~~l~~---~G-~~V~~~d~~~~~~--~~~--------~~~g----~~~~~~l~ell~~aDvV   96 (221)
                      +||.|||.|+.|  ..++..++.   +. -++..+|.++...  +..        ...+    +...++..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            589999999776  344444433   22 3799999865321  111        1112    22446788889999999


Q ss_pred             EEeCCC
Q 027577           97 VVNTPL  102 (221)
Q Consensus        97 v~~~p~  102 (221)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.70  E-value=0.0069  Score=44.70  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=50.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDvVv~~~p  101 (221)
                      .|.+|.|+|.|.+|...+..++..|. +|++.|+++.+.+.++++|+..+-+       .++..     ...|+++-++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            48899999999999999999988776 6889999887788888888643211       11211     24778877775

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0024  Score=50.45  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3699999999996 5699999999999999999999965

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.65  E-value=0.0024  Score=50.70  Aligned_cols=38  Identities=21%  Similarity=0.072  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-C--HHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-G--RIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G--~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      .|+||++.|.|. |  .||.++|+.|...|++|++.+++..
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            388999999996 4  4999999999999999999998753

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.65  E-value=0.0013  Score=51.71  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             CCCEEEEEccCH----HHHHHHHHHccC--CCeEE-EEcCCCCChh-HHHhcCc---eecCCHHhhcC--CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGR----IGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGA---KFEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~----iG~~iA~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~---~~~~~l~ell~--~aDvVv~~~p  101 (221)
                      +-.+|||||+|.    +++..+..++..  +++|+ ++|++....+ ..+..++   ..+++++++++  +.|+|++|+|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            346899999987    556556666543  56766 5787653322 3344443   34579999984  5889999998


Q ss_pred             C
Q 027577          102 L  102 (221)
Q Consensus       102 ~  102 (221)
                      .
T Consensus        95 ~   95 (237)
T d2nvwa1          95 V   95 (237)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.64  E-value=0.00091  Score=48.87  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCC---CeEEEEcCCCCChhHHHhcC--ceecCCHHhhcCCCCEEEEeCCCChhhhhcc
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i  110 (221)
                      ++|||||. |.+|+.+.+.|...+   .++..+..+...-+.....+  ........+.+.++|++++++|... .. -+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~-~~   80 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SR-AH   80 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hh-hh
Confidence            68999995 999999999996433   35655533221111111100  1111112344678999999998221 11 12


Q ss_pred             hHHHHhcCCCCCEEEEcCC
Q 027577          111 DKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       111 ~~~~~~~mk~ga~lIn~sr  129 (221)
                      ..   ...+.|..+||.|.
T Consensus        81 ~~---~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          81 AE---RARAAGCSVIDLSG   96 (144)
T ss_dssp             HH---HHHHTTCEEEETTC
T ss_pred             cc---ccccCCceEEeech
Confidence            22   23457899999875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.63  E-value=0.0013  Score=49.73  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CCCCEEEEeCCCC
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  103 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDvVv~~~p~~  103 (221)
                      -.|.+|.|.| .|.+|....+.++..|++|++..+++.+.+.+++.|...+    ...++..     +..|+|+-++.  
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg--  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG--  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence            4588999999 6999999999999999999999988888888888876432    1112221     24777777665  


Q ss_pred             hhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       104 ~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                          +....+.+..|+++..++.++.
T Consensus       108 ----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         108 ----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             ----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             ----chhHHHHHHHhCCCceEEEeec
Confidence                2234567788888888888864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.60  E-value=0.0025  Score=47.69  Aligned_cols=66  Identities=15%  Similarity=0.065  Sum_probs=42.7

Q ss_pred             CCEEEEEccCHHHHHHH--HHHcc-CC---CeEEEEcCCCCChhH----H----HhcC----ceecCCHHhhcCCCCEEE
Q 027577           36 GKTVGTVGCGRIGKLLL--QRLKP-FN---CNLLYHDRVKMDPQL----E----KETG----AKFEEDLDTMLPKCDIVV   97 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA--~~l~~-~G---~~V~~~d~~~~~~~~----~----~~~g----~~~~~~l~ell~~aDvVv   97 (221)
                      ..||.|||.|++|...+  ..+.. ..   -++..+|..+...+.    .    ...+    +....+.++.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999998876532  33322 22   379999986533221    1    1111    234568899999999999


Q ss_pred             EeCC
Q 027577           98 VNTP  101 (221)
Q Consensus        98 ~~~p  101 (221)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9975

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.55  E-value=0.0014  Score=50.97  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ||||.|||.|.-|-..|..|+..|++|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999999754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0035  Score=49.12  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (221)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++....
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~   42 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG   42 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            3699999999995 6799999999999999999999876443

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.0031  Score=47.39  Aligned_cols=97  Identities=13%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccC-CCeEEEE-cCC-C-CChhHHHh-----cC-----ceecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRV-K-MDPQLEKE-----TG-----AKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~-d~~-~-~~~~~~~~-----~g-----~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      ++|+|+| .|-.|+.+.+.|..+ .+++... .++ . ...+....     .+     .....+.+....++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 699999999999887 5666543 221 1 11111110     01     1223345556788999999999


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      ..  ...-+   .-...+.+..+||.|..--.+....
T Consensus        82 ~~--~s~~~---~~~~~~~~~~vIDlSadfRl~~~~~  113 (179)
T d2g17a1          82 HE--VSHDL---APQFLQAGCVVFDLSGAFRVNDRAF  113 (179)
T ss_dssp             HH--HHHHH---HHHHHHTTCEEEECSSTTSSSCHHH
T ss_pred             ch--hHHHH---hhhhhhcCceeeccccccccccccc
Confidence            22  11112   2233467899999986544443333

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.0054  Score=46.17  Aligned_cols=96  Identities=24%  Similarity=0.351  Sum_probs=58.0

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEE-cCCCCChhHHH---h-cC--ceecCCHHhhcCCCCEEEEeCCCChhhh
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYH-DRVKMDPQLEK---E-TG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~---~-~g--~~~~~~l~ell~~aDvVv~~~p~~~~t~  107 (221)
                      .+|||+| .|-.|+.+.+.|..+- .++... .++........   . .+  .....+.+++.+++|+|++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            3799999 6999999999998753 455544 33221111110   0 01  11124667777889999999995432  


Q ss_pred             hcchHHHHhcCCCCCEEEEcCCCCccCHHHHH
Q 027577          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (221)
Q Consensus       108 ~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~  139 (221)
                          .+..... .+..+||.|..==.+....+
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y  106 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVY  106 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhH
Confidence                2223333 57899999865444444333

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.50  E-value=0.0022  Score=51.00  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3699999999996 5799999999999999999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0024  Score=47.53  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHcc-CCCeE-EEEcCCCCCh---h-----HHHhcCceecCCHHhhcCCCCEEEEeCCCCh
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMDP---Q-----LEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~-~G~~V-~~~d~~~~~~---~-----~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~  104 (221)
                      ..+|+|+|+ |+||+.+++.+.. -++++ .++++.....   +     .....++....+++++++.+|+|+=...  |
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~--p   81 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR--P   81 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC--H
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc--H
Confidence            458999995 9999999998865 47775 4566543111   0     0112345556788889999999987654  3


Q ss_pred             hh-hhcchHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577          105 KT-RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus       105 ~t-~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      +. ...+.    ...+.+.-+|-.+.|=  +++.+
T Consensus        82 ~~~~~~~~----~a~~~~~~~ViGTTG~--~~~~~  110 (162)
T d1diha1          82 EGTLNHLA----FCRQHGKGMVIGTTGF--DEAGK  110 (162)
T ss_dssp             HHHHHHHH----HHHHTTCEEEECCCCC--CHHHH
T ss_pred             HHHHHHHH----HHHhccceeEEecCCC--cHHHH
Confidence            32 22221    2234567777777773  44443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.0021  Score=51.25  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=34.3

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +.|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4799999999995 6799999999999999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.43  E-value=0.0012  Score=49.40  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM   70 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~   70 (221)
                      .+|||.|||.|..|-..|..|+..|++ |.+++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            479999999999999999999999995 999998654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.41  E-value=0.011  Score=44.52  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccC-CCeEEEE-cCCCCChhHHHh---c---Cc-eecCCHHhhcCCCCEEEEeCCCChh
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEKE---T---GA-KFEEDLDTMLPKCDIVVVNTPLTEK  105 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~---~---g~-~~~~~l~ell~~aDvVv~~~p~~~~  105 (221)
                      ..|||||| .|-.|+.+.+.|..+ .+++... +++.........   .   .. ......++.++++|++++++|..  
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~--   82 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG--   82 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--
Confidence            45799999 699999999999876 3465544 332211111110   0   11 11122345567899999999943  


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCCCCcc
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~srg~~v  133 (221)
                          ...+....+.+...+|+.+.+.-.
T Consensus        83 ----~s~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          83 ----TTQEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             ----HHHHHHHTSCSSCEEEECSSTTTC
T ss_pred             ----hHHHHHHHHHhcCcccccchhhhc
Confidence                233333445555555555544433

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.002  Score=48.56  Aligned_cols=90  Identities=13%  Similarity=0.086  Sum_probs=63.7

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-----hc--CCCCEEEEeCCCChh
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-----ML--PKCDIVVVNTPLTEK  105 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-----ll--~~aDvVv~~~p~~~~  105 (221)
                      ..+.+|.|.| .|.+|....+.++.+|++|++..+++.+.+.+++.|...+-+.++     .+  ...|.++-++.  . 
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g-  106 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--D-  106 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--H-
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--h-
Confidence            3456788887 599999999999999999999998877777778888754322221     11  12477766654  1 


Q ss_pred             hhhcchHHHHhcCCCCCEEEEcCC
Q 027577          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       106 t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                         ..-.+.++.|+++..+|+++.
T Consensus       107 ---~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         107 ---KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---HHHHHHHHHhccccceEeecc
Confidence               123567788888888888864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.0036  Score=49.45  Aligned_cols=68  Identities=24%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceec----CCH----------HhhcCCCCEEE
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL----------DTMLPKCDIVV   97 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l----------~ell~~aDvVv   97 (221)
                      .|+||++.|-| .+.||+++|+.|...|++|++.+++....+..++.+...+    .+.          .+-+..-|+++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            38899999999 5789999999999999999999987655554444443211    121          12235689998


Q ss_pred             EeC
Q 027577           98 VNT  100 (221)
Q Consensus        98 ~~~  100 (221)
                      .+.
T Consensus        82 nnA   84 (248)
T d2d1ya1          82 NNA   84 (248)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0043  Score=49.42  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|.+.|++|++.+|+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            499999999996 5699999999999999999999865

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.014  Score=43.74  Aligned_cols=96  Identities=13%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcc--CHHHHHHHHHHccCCCeEEEEcCCCCC-hh--------HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~--G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~--------~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|.+|++||=  -++.++++..+..+|+++.++.|.... .+        .....|  +....++++.++.+|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            478999999994  479999999999999999999875321 11        112223  34567899999999999875


Q ss_pred             CCCCh-------h-------hhhcchHHHHhcCCCCCEEEEcC
Q 027577          100 TPLTE-------K-------TRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       100 ~p~~~-------~-------t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .=...       .       ....++.......+++++|+.+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            42111       0       01223444555677888888765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.31  E-value=0.0027  Score=44.45  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -++|.|||.|.+|-.+|..|+.+|.+|.++.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999999754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.29  E-value=0.0022  Score=47.12  Aligned_cols=89  Identities=25%  Similarity=0.363  Sum_probs=53.1

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCC---eEEEEcCCCCChhHHH--hcCceecCCHHhhcCCCCEEEEeCCCChhhhhc
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEK--ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~--~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~  109 (221)
                      |-+|||||. |-+|+.+.+.|....+   ++..+..+....+...  ..........++...++|++++++|.  .... 
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~--~~s~-   77 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGS--STSA-   77 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCH--HHHH-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCc--cchh-
Confidence            458999995 9999999999977653   3444432211111000  00111223445667889999999982  2211 


Q ss_pred             chHHHHhcCCCCCEEEEcCC
Q 027577          110 FDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       110 i~~~~~~~mk~ga~lIn~sr  129 (221)
                        +......+++..+||.|.
T Consensus        78 --~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          78 --KYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             --HHHHHHHHTTCEEEECSS
T ss_pred             --hHHhhhccccceehhcCh
Confidence              222234567999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.27  E-value=0.0029  Score=50.27  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999999864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0029  Score=44.55  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +++.|||.|.||-.+|..|..+|++|.++.+.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            699999999999999999999999999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.23  E-value=0.003  Score=43.93  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -+++.|||.|.+|-.+|..+..+|.+|.++.+.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3799999999999999999999999999998765

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.21  E-value=0.0084  Score=47.50  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999995 5799999999999999999999864

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.21  E-value=0.015  Score=44.26  Aligned_cols=100  Identities=17%  Similarity=0.319  Sum_probs=73.7

Q ss_pred             HHHHHHccCCCeEEEEcCCC----CChhHHHhcCceecCCHHhhcCCCCEEEEe-CCCChhhhhcchHHHHhcCCCCCEE
Q 027577           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVN-TPLTEKTRGMFDKDRIAKMKKGVLI  124 (221)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~ell~~aDvVv~~-~p~~~~t~~~i~~~~~~~mk~ga~l  124 (221)
                      ..++.|...|++|++=.--.    -+.+...+.|+...++.++++.++|+|+.. .|...+    ...+.+..||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            46788888999998764322    234455677888888889999999988754 453222    223457789999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEeeCC
Q 027577          125 VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (221)
Q Consensus       125 In~srg~~vd~~al~~al~~g~i~~a~lDV~  155 (221)
                      |..--  .....++.++|.+.++...++|..
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            98753  556778999999999998888854

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0098  Score=47.03  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.2

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..|+||++.|.|. +.||+++|+.|.+.|++|++.+++.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4599999999995 6899999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0035  Score=43.63  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++|.|||.|.+|-.+|..++.+|.+|.++++.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            689999999999999999999999999999865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0045  Score=46.72  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=34.7

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ....+|+|+|||.|..|-+.|..|+..|++|.+|++.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            35678999999999999999999999999999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0065  Score=47.73  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999994 6799999999999999999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0048  Score=48.58  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cCCCCCEEEEEccC---HHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G---~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            36999999999974   499999999999999999888764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.08  E-value=0.0096  Score=42.07  Aligned_cols=63  Identities=21%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             EEEEEccCHHHHHHHHHHc-cCCCeEEE-EcCCCCChhHHHhcCce--ecCCHHhhcC-CCCEEEEeCC
Q 027577           38 TVGTVGCGRIGKLLLQRLK-PFNCNLLY-HDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTP  101 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~-~~G~~V~~-~d~~~~~~~~~~~~g~~--~~~~l~ell~-~aDvVv~~~p  101 (221)
                      +|.|+|+|++|+.+++.+. ..|+++++ +|..+..... .-.|+.  ..++++++.+ +.++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR-PVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-EETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-EECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7999999999999999774 45788655 5654432211 112333  3355666554 4677778887

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0061  Score=47.13  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCC--eEEEEcCCCCChh--HHHhcC-----ceecCCHHhhcCCCCEEEEeCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ--LEKETG-----AKFEEDLDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~--~~~~~g-----~~~~~~l~ell~~aDvVv~~~p~  102 (221)
                      ...+|+|.|.| .|.+|+.+++.|...|.  +|++++|++....  ......     +...+++.+.++.+|+++.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            35789999999 79999999999977774  7999998653321  111111     11224566778899999988753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.05  E-value=0.0045  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=32.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++++.|||.|.+|-.+|..|+..|.+|.++++.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            6899999999999999999999999999998765

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.03  E-value=0.014  Score=43.83  Aligned_cols=89  Identities=18%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             CCCEEEEE--ccCHHHHHHHHHHccCCCeEEEEcCCCCChh----HHHhcCceecCCH------------Hhh----cCC
Q 027577           35 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ----LEKETGAKFEEDL------------DTM----LPK   92 (221)
Q Consensus        35 ~g~~vgII--G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~----~~~~~g~~~~~~l------------~el----l~~   92 (221)
                      .|.++.|+  |.|.+|....+.++.+|++|++..++....+    .++++|...+-+.            .++    -..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            37889888  6799999999999999999988766544332    3456665432111            111    134


Q ss_pred             CCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        93 aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .|+++-++. .+     .....+..|+++..+|.++.
T Consensus       108 vdvv~D~vg-~~-----~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         108 AKLALNCVG-GK-----SSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             EEEEEESSC-HH-----HHHHHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCC-cc-----hhhhhhhhhcCCcEEEEECC
Confidence            788888775 12     22456788999999998863

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.03  E-value=0.0099  Score=46.97  Aligned_cols=41  Identities=20%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (221)
                      .+|+||++.|.|. +.||+++|+.|.+.|++|++.+++....
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            3689999999995 5699999999999999999999876543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.99  E-value=0.006  Score=42.35  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=33.0

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..+++|.|||.|.+|-.+|..|+.+|.+|.++.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            458999999999999999999999999999998764

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.98  E-value=0.0069  Score=41.73  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             CCEEEEEcc----------CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCC
Q 027577           36 GKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        36 g~~vgIIG~----------G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p  101 (221)
                      .|+|||+|+          .+-.-.+.+.|...|.+|.+|||.-...+.  ..+.....+++++++.+|+|++...
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            369999995          346778999999999999999996543222  2345567799999999998775543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.008  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.5

Q ss_pred             CCCCEEEEEccCH---HHHHHHHHHccCCCeEEEEcCCCCC
Q 027577           34 LEGKTVGTVGCGR---IGKLLLQRLKPFNCNLLYHDRVKMD   71 (221)
Q Consensus        34 l~g~~vgIIG~G~---iG~~iA~~l~~~G~~V~~~d~~~~~   71 (221)
                      |+||++.|.|.+.   ||+++|+.|...|++|++.+++...
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            8899999999764   9999999999999999999987543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0046  Score=48.93  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=34.6

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4799999999995 7899999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.97  E-value=0.033  Score=43.78  Aligned_cols=40  Identities=28%  Similarity=0.164  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCCh
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~   72 (221)
                      +|+||++.|.|. +.||+++|+.|.+.|++|++..++....
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~   42 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP   42 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH
Confidence            589999999995 5799999999999999988776654433

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.01  Score=46.72  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=34.1

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999995 6799999999999999999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0047  Score=43.51  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=31.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |++.|||.|.+|-.+|..++.+|.+|.++.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.96  E-value=0.0037  Score=45.45  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=30.9

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~   69 (221)
                      .||||.|||.|..|-.+|..|+..+  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999998876  5788998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.0032  Score=44.31  Aligned_cols=32  Identities=13%  Similarity=-0.013  Sum_probs=29.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +++.|||.|.||-.+|..++.+|.+|.++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999988765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.91  E-value=0.0063  Score=48.02  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +.|.||++.|.|. +.||+++|+.|...|++|++++++.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5689999999995 6899999999999999999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.91  E-value=0.0058  Score=42.94  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -.+++|.|||.|.+|-.+|..|...|.+|.++++.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            357899999999999999999999999999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.91  E-value=0.0051  Score=42.97  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++.|||.|.||-.+|..++.+|.+|.++.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999988654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0093  Score=46.75  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.91  E-value=0.0071  Score=48.11  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             cccCCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           30 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        30 ~~~~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ...+|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            34579999999999 68999999999999999999988753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.87  E-value=0.046  Score=42.35  Aligned_cols=111  Identities=20%  Similarity=0.235  Sum_probs=79.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCC---Ch------h----HHHhcC-ceecCCHHhhcCCCCE
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DP------Q----LEKETG-AKFEEDLDTMLPKCDI   95 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~---~~------~----~~~~~g-~~~~~~l~ell~~aDv   95 (221)
                      +..|...||.|.|.|..|..+|+.+...+. +++.+|+...   ..      +    ..+... .....++.+++..+++
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~  100 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  100 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcce
Confidence            356899999999999999999999987776 4889998621   10      0    011111 1223578899999998


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                      +....     +.+++.++.+..|.+..+|.=.|.-..--|.  ..+...|+..
T Consensus       101 ~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~--~~a~~~G~ai  146 (222)
T d1vl6a1         101 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDP--ELAREAGAFI  146 (222)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCH--HHHHHTTCSE
T ss_pred             ecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhh--hhheeccceE
Confidence            76654     3677888889999999999999986654443  3456677765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.013  Score=45.58  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=46.7

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee-----cCCHH---hhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-----EEDLD---TMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~~~l~---ell~~aDvVv~~~  100 (221)
                      |+||++.|.|. +.||+++|+.|...|++|++.+++.   +..++.+.+.     .+..+   +-+.+.|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~---~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---ELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---HHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999995 6799999999999999999999853   3334433221     12222   3446799998865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.81  E-value=0.0098  Score=48.45  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhH---HHhcCceec----CC----HHhhcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE----ED----LDTMLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~----~~----l~ell~~aDvVv~~~p~  102 (221)
                      +.|||.|+| .|.||+.+++.|.+.|++|.+..|+..+...   ....+++.+    .+    ++.++..+|.+++..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            368999999 6999999999999999999999887644322   111244321    12    45677889998887764


Q ss_pred             C
Q 027577          103 T  103 (221)
Q Consensus       103 ~  103 (221)
                      .
T Consensus        82 ~   82 (350)
T d1xgka_          82 Q   82 (350)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.80  E-value=0.0065  Score=44.43  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCChhHHH-------hc------CceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEK-------ET------GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~-------~~------g~~~~~~l~ell~~aDv   95 (221)
                      .||.|||. |.+|..+|..|...++       .+..+|.... .+.++       ..      .+....+.++.++++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            48999995 9999999998864332       4777886432 11111       11      12234677899999999


Q ss_pred             EEEeCC
Q 027577           96 VVVNTP  101 (221)
Q Consensus        96 Vv~~~p  101 (221)
                      |+++..
T Consensus        83 VVitag   88 (154)
T d5mdha1          83 AILVGS   88 (154)
T ss_dssp             EEECCS
T ss_pred             EEEecc
Confidence            999863

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0053  Score=52.50  Aligned_cols=85  Identities=19%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChh-----------------------HHHhc--C--ceec--
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--G--AKFE--   83 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g--~~~~--   83 (221)
                      |.++||.|||+|.+|..+++.|...|. ++.++|...-...                       .....  +  +...  
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678899999999999999999999998 5888886432110                       00111  1  1111  


Q ss_pred             ---CCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCC
Q 027577           84 ---EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK  119 (221)
Q Consensus        84 ---~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk  119 (221)
                         +..+++++++|+|+.++- +.+++..++...+...+
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence               223567899999988875 66778888877665433

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.77  E-value=0.01  Score=46.70  Aligned_cols=68  Identities=24%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChh--------HHHhcCceec-------CCHHhhcCCCCEEEEe
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--------LEKETGAKFE-------EDLDTMLPKCDIVVVN   99 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~--------~~~~~g~~~~-------~~l~ell~~aDvVv~~   99 (221)
                      -+||.|+| .|.||+.+++.|...|++|++.+|+.....        .....++..+       .++.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            46799999 599999999999999999999988653211        1122233321       2345677889998888


Q ss_pred             CCCC
Q 027577          100 TPLT  103 (221)
Q Consensus       100 ~p~~  103 (221)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            7643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.75  E-value=0.0059  Score=46.77  Aligned_cols=34  Identities=24%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +-++|.|||.|-+|-+.|..|+..|++|.++++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3568999999999999999999999999999974

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.75  E-value=0.0088  Score=48.94  Aligned_cols=66  Identities=20%  Similarity=0.123  Sum_probs=45.0

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC--cee-----cCCHHhhcCCCCEEEEeC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKF-----EEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~-----~~~l~ell~~aDvVv~~~  100 (221)
                      .+|||.|.| .|.||+.+++.|...|++|+++|+............  +..     ...+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            689999998 799999999999999999999986542211111111  111     123345567899887655

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.69  E-value=0.0042  Score=43.71  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++.|||.|.||-.+|..+..+|++|.++.+.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999998765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.69  E-value=0.01  Score=47.29  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999999864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.68  E-value=0.038  Score=41.18  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHcc---CCC----eEEEEcCCCCCh--h-HH---Hhc------CceecCCHHhhcCCCCE
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKP---FNC----NLLYHDRVKMDP--Q-LE---KET------GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~---~G~----~V~~~d~~~~~~--~-~~---~~~------g~~~~~~l~ell~~aDv   95 (221)
                      -.+|.|+|. |.||..++-.|..   ||.    .+..+|......  + ..   ...      .+....+..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 9999999998865   443    466777643211  1 01   011      12334688899999999


Q ss_pred             EEEeCCCC--h---------hhhhcc---hHHHHhcCCCCCEEEEcCCCCccCHHHHHH
Q 027577           96 VVVNTPLT--E---------KTRGMF---DKDRIAKMKKGVLIVNNARGAIMDTQAVVD  140 (221)
Q Consensus        96 Vv~~~p~~--~---------~t~~~i---~~~~~~~mk~ga~lIn~srg~~vd~~al~~  140 (221)
                      |++.....  +         .+..++   .+..-+.-+++++++-++  .++|.-+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            99986321  1         011111   112223345678777775  4688777653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.04  Score=44.30  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            599999999995 6799999999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0074  Score=47.74  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4699999999995 6799999999999999999999864

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.62  E-value=0.0079  Score=49.07  Aligned_cols=67  Identities=13%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh------c---------CceecCCHHhhcCCCCEEEE
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------T---------GAKFEEDLDTMLPKCDIVVV   98 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~------~---------g~~~~~~l~ell~~aDvVv~   98 (221)
                      .||+|.|.| .|.||+.+++.|...|++|++..|+....+....      .         .+....++++++..+|+|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            599999999 6999999999999999999988775422221110      0         01112345678889998876


Q ss_pred             eCC
Q 027577           99 NTP  101 (221)
Q Consensus        99 ~~p  101 (221)
                      +.-
T Consensus        90 ~a~   92 (342)
T d1y1pa1          90 IAS   92 (342)
T ss_dssp             CCC
T ss_pred             hcc
Confidence            543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0073  Score=47.45  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.| .+.||+++|+.|...|++|++.++++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            38999999988 57899999999999999999999875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.60  E-value=0.013  Score=46.50  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            69999999998 57899999999999999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.59  E-value=0.009  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++|.|||.|.+|-.+|..++..|.+|.++++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            47899999999999999999999999999999764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.59  E-value=0.013  Score=45.60  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhH---------HHhcCceec-------CCHHhhcCCCCEEEE
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---------EKETGAKFE-------EDLDTMLPKCDIVVV   98 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~---------~~~~g~~~~-------~~l~ell~~aDvVv~   98 (221)
                      -|||.|+|. |.+|+.+++.|...|++|++++|+......         ....++..+       ....+.++.+|.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            578999995 999999999999999999999986533211         111233221       123456677888776


Q ss_pred             eCC
Q 027577           99 NTP  101 (221)
Q Consensus        99 ~~p  101 (221)
                      +..
T Consensus        83 ~~~   85 (307)
T d1qyca_          83 TVG   85 (307)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.55  E-value=0.037  Score=43.24  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.++++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            589999999995 6799999999999999999999865

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.54  E-value=0.0062  Score=47.70  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCcee---------cCCHHhhcCCCCEEEEeCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---------EEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~---------~~~l~ell~~aDvVv~~~p  101 (221)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++....+......+..         +....+-+..-|+++.+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            689999999996 57999999999999999999998764433211111110         1112233456899988753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.48  E-value=0.0088  Score=41.79  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=31.7

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++++.|||.|.+|-.+|..|..+|.+|.++++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            5789999999999999999999999999999765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.48  E-value=0.0054  Score=48.39  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..|+|.|||.|..|-..|..|+..|++|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.029  Score=45.61  Aligned_cols=67  Identities=21%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             CCCCCEEEEEcc---CHHHHHHHHHHccCC-CeEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCCCCEEEEe
Q 027577           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~iA~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDvVv~~   99 (221)
                      .+.|++|+++|-   +++..+++..+..+| +++.++.+...  ..+   .+++.+  +....+++++++++|+|...
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~  228 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT  228 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence            589999999996   789999999999885 68888876432  111   222223  34567899999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.44  E-value=0.0097  Score=45.95  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ..+||.|||.|..|..+|..|+..|++|.++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46799999999999999999999999999999754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.43  E-value=0.0076  Score=41.64  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++.|||.|.+|-.+|..++.+|.+|.++++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            4799999999999999999999999999998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.41  E-value=0.0072  Score=41.32  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      ..++.||+|+|||.|+-|..+|.-|...+-+++...++
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            35689999999999999999999998887776555543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.41  E-value=0.016  Score=45.80  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999998 47899999999999999999999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.40  E-value=0.0096  Score=46.47  Aligned_cols=57  Identities=18%  Similarity=0.282  Sum_probs=41.5

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p  101 (221)
                      |||.|.|. |.||+.+++.|...|++|++.|++....        .-..+++++++  +.|+|+-+..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~--------~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI--------TNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT--------TCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC--------CCHHHHHHHHHHcCCCEEEeecc
Confidence            68999996 9999999999999999999999864211        11123445554  5688776554

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.007  Score=39.23  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=38.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (221)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++.+..+++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            5789999885 99999999999999999999988776777776655

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.012  Score=46.09  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999994 6799999999999999999999864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.018  Score=45.26  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46999999995 6799999999999999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.32  E-value=0.0086  Score=42.26  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+++.|||.|.||-.+|..++.+|.+|.++.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.31  E-value=0.0074  Score=46.56  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ++|.|||.|..|-..|..|+..|++|.+++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            579999999999999999999999999998754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.28  E-value=0.023  Score=44.75  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 5799999999999999999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.24  E-value=0.02  Score=45.10  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 7899999999999999999999864

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.19  E-value=0.056  Score=40.91  Aligned_cols=97  Identities=9%  Similarity=0.060  Sum_probs=69.6

Q ss_pred             HHHHHHccCCCeEEEEcCCC----CChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEE
Q 027577           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                      ..++.|...|++|++=.-..    -+.+...+.|+...++.+++. ++|+|+..-|.++        +.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceEE
Confidence            35677888899998764322    234455567888877877877 5898876555232        3467899999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeeCCCC
Q 027577          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (221)
Q Consensus       126 n~srg~~vd~~al~~al~~g~i~~a~lDV~~~  157 (221)
                      ..-.  +....++.+.|.+.++...++|....
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence            8755  34457899999999999888886543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.02  Score=44.78  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999995 6799999999999999999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.18  E-value=0.012  Score=47.83  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      +.|+|.|||.|.-|-.+|..|+..|.+|.+++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999997653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.0063  Score=44.54  Aligned_cols=99  Identities=18%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC-------eEEEEcCCCCChhHHH-------hc------CceecCCHHhhcCCCCE
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEK-------ET------GAKFEEDLDTMLPKCDI   95 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~-------~~------g~~~~~~l~ell~~aDv   95 (221)
                      +||.|||. |.+|+.+|..|...+.       ....++... ..+...       ..      .+....+..+.++++|+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ-AMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG-GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc-chhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            48999996 9999999999875432       123344322 111111       00      12334677889999999


Q ss_pred             EEEeCCC--Chh-hh-hcc----------hHHHHhcCCCCCEEEEcCCCCccCHHHH
Q 027577           96 VVVNTPL--TEK-TR-GMF----------DKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (221)
Q Consensus        96 Vv~~~p~--~~~-t~-~~i----------~~~~~~~mk~ga~lIn~srg~~vd~~al  138 (221)
                      |+++.-.  .|. ++ .++          ....-+..+++++++.++  .++|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs--NPvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG--NPANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec--CcHHHHHH
Confidence            9998732  211 11 111          111222245678888875  46665443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.15  E-value=0.0097  Score=46.69  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcc-CH--HHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~--iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -|+||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999995 54  99999999999999999988764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.09  E-value=0.014  Score=45.90  Aligned_cols=33  Identities=30%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             CEEEEE-c-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTV-G-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgII-G-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |||++| | .+.||+++|+.|...|++|++.+++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            566555 6 46799999999999999999999864

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=95.08  E-value=0.087  Score=38.58  Aligned_cols=54  Identities=7%  Similarity=0.084  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEe
Q 027577           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN   99 (221)
Q Consensus        46 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~   99 (221)
                      ++.++.+..+..+|+++.+..|..-.++.....++....++++.++.+|+|..-
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td   73 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAK   73 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeee
Confidence            389999999999999999999865433323334566678999999999999863

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0029  Score=47.74  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCe-EEEEcCCCCCh-hHHHhcCceec-----CCHHhhcC-----CCCEEEEeCCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVKMDP-QLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPL  102 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~-~~~~~~g~~~~-----~~l~ell~-----~aDvVv~~~p~  102 (221)
                      +++|.|.| .|.+|...++.++.+|++ |++.+.+.+.. ....+.|...+     +++.+.++     .+|+|+-++. 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            57899999 599999999999999986 55555543222 23345565322     34444333     3999998885 


Q ss_pred             ChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus       103 ~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                       .+    .....++.++++..++.++.
T Consensus       110 -g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 -GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             -HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             -ch----hHHHHhhhccccccEEEecc
Confidence             11    23567888999999998863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.00  E-value=0.063  Score=41.91  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 57799999999999999999999854

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.00  E-value=0.01  Score=47.35  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+++..
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 78999999999999999999998753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.03  Score=43.86  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|-|. +.||+++|+.|...|++|++.++++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6799999999999999999999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.022  Score=45.78  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=42.5

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC-ChhHHHhc------CceecCCHHhhcCCCCEEEEeC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKET------GAKFEEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~------g~~~~~~l~ell~~aDvVv~~~  100 (221)
                      |||.|.| .|.||+.+++.|...|++|+++|+... ..+.....      .+...+.++.++.++|+|+-+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlA   73 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLA   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECc
Confidence            7899998 699999999999999999999986321 22111110      1111233455667899886443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.013  Score=47.53  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             cCCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .+|+||++.|-|. +.||+++|+.|...|++|++.|+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4699999999995 5799999999999999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.89  E-value=0.017  Score=44.49  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .-.+++|.|||.|..|-..|..|+..|++|.+++++.
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            4578999999999999999999999999999999765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.82  E-value=0.031  Score=44.38  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            388999999995 6799999999999999999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0066  Score=47.57  Aligned_cols=37  Identities=30%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      .|++++|.|||+|.+|..+|..|...|. ++.++|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5899999999999999999999999998 588888653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.77  E-value=0.038  Score=43.01  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999996 5699999999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.72  E-value=0.0084  Score=45.11  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=41.8

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCe--EEEEcCCCCChhHHHhcCce-------ecCCHHhhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~--V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDvVv~~~p  101 (221)
                      +||.|.| .|.||+.+++.|...|.+  |+...|++...... ..+++       ...++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            5899999 699999999999988865  55555643221111 11211       11344567889999987754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.71  E-value=0.023  Score=44.68  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999994 6799999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.69  E-value=0.014  Score=46.34  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999999865

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.66  E-value=9.8e-05  Score=52.77  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN   59 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G   59 (221)
                      ++++|+|+|+||+.+|+++++||
T Consensus        99 r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          99 RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CCEEEEcCCHHHHHHHHHHHhcC
Confidence            47899999999999999999987

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.021  Score=46.79  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=28.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.+.|.| .|.||+.+++.|...|++|++.|+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5666888 89999999999999999999999853

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.52  E-value=0.062  Score=42.33  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ..|++|++||+-    ...+.++..|+++.++++++..       +.......++++++||+|+++-.  .-..+-+ +.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~  185 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCA--SVVDKTL-PR  185 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETH--HHHHTCH-HH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEec--hhhcCCH-HH
Confidence            469999999974    4666677788999999997632       22233456788889999888753  1111112 34


Q ss_pred             HHhcCCCCCEEEEcC
Q 027577          114 RIAKMKKGVLIVNNA  128 (221)
Q Consensus       114 ~~~~mk~ga~lIn~s  128 (221)
                      .++..++...+|=++
T Consensus       186 LL~~~~~a~~vvl~G  200 (251)
T d2h1qa1         186 LLELSRNARRITLVG  200 (251)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCCcCCEEEEEC
Confidence            566666665555443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.49  E-value=0.017  Score=45.94  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.2

Q ss_pred             cCCCCCEEEEEccC---HHHHHHHHHHccCCCeEEEEcCC
Q 027577           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G---~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47999999999986   59999999999999999988764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.33  E-value=0.026  Score=45.58  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             CCCCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        34 l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ..||||.|.| .|-||+.+++.|...|++|+++++...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999999 799999999999999999999998653

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.37  Score=36.24  Aligned_cols=157  Identities=12%  Similarity=0.090  Sum_probs=94.4

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEE-cC---CCCC---hhHHHhcCceec-------C-----CHHhhc--CCCCE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR---VKMD---PQLEKETGAKFE-------E-----DLDTML--PKCDI   95 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~-d~---~~~~---~~~~~~~g~~~~-------~-----~l~ell--~~aDv   95 (221)
                      |||.++|.+..|..+.+.|...|++|.++ ..   ....   ...+.+.++...       .     ++-+.+  -++|+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dl   80 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAEL   80 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCc
Confidence            68999999999999999998889997643 21   1111   123334444211       0     111222  35899


Q ss_pred             EEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC-----CCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCC
Q 027577           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP  170 (221)
Q Consensus        96 Vv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s-----rg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~  170 (221)
                      ++++.-     ..++.++.++..+-|.+=+..|     ||.    ..+..++.+|.-. .++-++.-++--..-|.+...
T Consensus        81 iv~~~~-----~~ii~~~~l~~~~~g~iN~H~slLP~yrG~----~pi~wai~~g~~~-~GvTih~~~~~~D~G~Ii~q~  150 (203)
T d2bw0a2          81 NVLPFC-----SQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKK-GGFSIFWADDGLDTGDLLLQK  150 (203)
T ss_dssp             EEESSC-----SSCCCHHHHTCSTTCEEEEESSCTTTTBSS----CHHHHHHHTTCSE-EEEEEEECCSSSSCSCEEEEE
T ss_pred             eEEeec-----chhhhhhhhhhhhhHhhhhhhccccccccc----ceeeeeecccccc-cCceeEEeccccccchhheee
Confidence            988653     3578888888777776656665     454    3455567777543 355555554433344555556


Q ss_pred             CeEECCCCCcCCHHHH-----HHHHHHHHHHHHHcCCC
Q 027577          171 NQAMTPHVSGTTIDLR-----YAAGVKDMLDRYFKGED  203 (221)
Q Consensus       171 n~~~tPH~a~~t~~~~-----~~~~~~~~~~~~~~g~~  203 (221)
                      .+-+.|+--..+...+     ....+.+.+..+.+|+-
T Consensus       151 ~~~i~~~dt~~~l~~k~l~~~~~~~~~~~l~~i~~g~~  188 (203)
T d2bw0a2         151 ECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKA  188 (203)
T ss_dssp             EEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCC
T ss_pred             cccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6777777544333222     12456778888888863

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.029  Score=43.52  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +..||.|||.|.-|-..|..|+..|++|.++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35679999999999999999999999999998754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.018  Score=45.67  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=30.7

Q ss_pred             CCCEEEEE--ccCHHHHHHHHHHcc-CCCeEEEEcCCCC
Q 027577           35 EGKTVGTV--GCGRIGKLLLQRLKP-FNCNLLYHDRVKM   70 (221)
Q Consensus        35 ~g~~vgII--G~G~iG~~iA~~l~~-~G~~V~~~d~~~~   70 (221)
                      +||+|+||  |.+.||+++|+.|.. .|.+|+.++|+..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999988  678999999999875 5899999999653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.14  E-value=0.021  Score=43.05  Aligned_cols=64  Identities=19%  Similarity=0.145  Sum_probs=41.1

Q ss_pred             CEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCChhHHHhcCceecCCH----HhhcCCCCEEEEeCCCC
Q 027577           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDL----DTMLPKCDIVVVNTPLT  103 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l----~ell~~aDvVv~~~p~~  103 (221)
                      |+|.|.|. |.||+.+++.|.+.|.  +|+...|++.....  ..... ..++    +.+...+|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~--~~~~~-~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP--RLDNP-VGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCT--TEECC-BSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcc--ccccc-ccchhhhhhccccchheeeeeeeee
Confidence            79999996 9999999999988887  56666665422110  11111 1222    23345589999887543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.05  E-value=0.018  Score=45.27  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDR   67 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~   67 (221)
                      .|.||++.|.|. +.||+++|+.|...|++|++.++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            589999999985 67999999999999999987554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.04  E-value=0.022  Score=42.41  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      +|.|||.|..|-+.|..|+..|+ +|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699999754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.048  Score=43.99  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |||.|+| .|.||+.+++.|...|++|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            6899998 6999999999999999999999863

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.92  E-value=0.38  Score=33.92  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             EEEEEc-cCHHHHHHHHHHc-cCCCeEE-EEcCCCCChhHHHhcCceecCCHHhh-cCCCCEEEEeCCCChhhhhcchHH
Q 027577           38 TVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKD  113 (221)
Q Consensus        38 ~vgIIG-~G~iG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDvVv~~~p~~~~t~~~i~~~  113 (221)
                      ||+|+| .|+||+.+++.+. .-++++. ++|+.. .              +... ...+|+|+=... .+.+...+.  
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~--------------~~~~~~~~~DvvIDFS~-p~~~~~~~~--   62 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-P--------------LSLLTDGNTEVVIDFTH-PDVVMGNLE--   62 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-C--------------THHHHTTTCSEEEECCC-TTTHHHHHH--
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-c--------------hhhhccccCCEEEEccc-HHHHHHHHH--
Confidence            799999 6999999999875 4577754 566532 1              1111 246898876553 122222221  


Q ss_pred             HHhcCCCCCEEEEcCCCC
Q 027577          114 RIAKMKKGVLIVNNARGA  131 (221)
Q Consensus       114 ~~~~mk~ga~lIn~srg~  131 (221)
                        ..++.+.-+|-.+.|=
T Consensus        63 --~~~~~~~~~ViGTTG~   78 (135)
T d1yl7a1          63 --FLIDNGIHAVVGTTGF   78 (135)
T ss_dssp             --HHHHTTCEEEECCCCC
T ss_pred             --HHHhcCCCEEEecccc
Confidence              2234566777666764

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.92  E-value=0.021  Score=42.42  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH---hcCc-eecCCHHhhcCCCCEEEEeCCCChhhhhcc--
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--  110 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~---~~g~-~~~~~l~ell~~aDvVv~~~p~~~~t~~~i--  110 (221)
                      +||||=|+|+||+.+.|.+...+.+|.+.+... ..+...   +..- ... -..++-...|.+++-    ...-.+.  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~-~~~~v~~~~~~l~i~----g~~I~~~~~   74 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHR-FPGEVAYDDQYLYVD----GKAIRATAV   74 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCS-CSSCEEECSSEEEET----TEEEEEECC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCc-cccccccccceeEec----ceeEEEEec
Confidence            489999999999999999887789988887533 333222   1111 000 001111233444331    0111111  


Q ss_pred             -hHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          111 -DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       111 -~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                       +.+.+..-+-|.-+|==+.|.-.+.+.+...|+.|-
T Consensus        75 ~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          75 KDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             SSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             CChHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence             112222222344444455788888888888888664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.77  E-value=0.036  Score=44.76  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC--CeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~   69 (221)
                      |+|+|||.|.-|-.+|+.|+..|  .+|.+++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            68999999999999999986654  6899999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.77  E-value=0.054  Score=42.40  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ||.+.|-| .+.||+++|+.|...|++|++.+++.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56666667 46799999999999999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.75  E-value=0.048  Score=42.10  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .||+|.|.|. |.||+++|+.|.+.|++|++.|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899999995 7799999999999999999998754

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=93.66  E-value=0.035  Score=41.21  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=27.0

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~   67 (221)
                      .||||=|+|+||+.+.+.+...+.+|.+.+.
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            3799999999999999999877888887764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.041  Score=44.25  Aligned_cols=65  Identities=22%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCC-CeEEEEcCCCCChhHH-HhcCcee-------cCCHH-hhcCCCCEEEEeCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGAKF-------EEDLD-TMLPKCDIVVVNTP  101 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d~~~~~~~~~-~~~g~~~-------~~~l~-ell~~aDvVv~~~p  101 (221)
                      |||.|.| .|.||+.+++.|.+.| .+|++.|+........ ...+++.       ..++. .+.+++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            6899998 6999999999998888 5899998753222111 1111211       11222 35667998876554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.41  E-value=0.023  Score=44.57  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +|.|||.|..|..+|..|+..|.+|.++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.36  E-value=0.041  Score=43.17  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        34 l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999988885 5699999999999999999999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.30  E-value=0.039  Score=40.83  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=29.3

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|..|...|..|+..|.+|.+++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.18  E-value=0.039  Score=42.74  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .|.|||.|-+|.++|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999854

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.18  E-value=0.05  Score=41.74  Aligned_cols=34  Identities=12%  Similarity=0.010  Sum_probs=30.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM   70 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~   70 (221)
                      .+|.|||.|..|..+|..|+..|. +|.++++++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            479999999999999999999996 8999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.09  E-value=0.053  Score=41.12  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=28.8

Q ss_pred             EEEEEccCHHHHHHHHHHc--cCCCeEEEEcCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLK--PFNCNLLYHDRVKM   70 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~--~~G~~V~~~d~~~~   70 (221)
                      +|+|||.|..|...|..|.  .+|++|.+|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            8999999999999999885  36889999998653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.95  E-value=0.056  Score=42.89  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             EEEEEc-cCHHHHHHHHHHccCCCeEEEEcC
Q 027577           38 TVGTVG-CGRIGKLLLQRLKPFNCNLLYHDR   67 (221)
Q Consensus        38 ~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~   67 (221)
                      ||.|.| .|.||+.+++.|...|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            688887 799999999999999999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.95  E-value=0.043  Score=39.87  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=26.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEE
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH   65 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~   65 (221)
                      .+++|.|||.|.+|-.+|..|+.+|.++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4789999999999999999999999874443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.075  Score=39.05  Aligned_cols=100  Identities=23%  Similarity=0.299  Sum_probs=51.7

Q ss_pred             EEEEEccCHHHHHHHHHHccC--CC--eEEEE-cCCC-------CC----h--hHHHhcCceecCCHHh---hc---CCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF--NC--NLLYH-DRVK-------MD----P--QLEKETGAKFEEDLDT---ML---PKC   93 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~--G~--~V~~~-d~~~-------~~----~--~~~~~~g~~~~~~l~e---ll---~~a   93 (221)
                      +|+|+|+|.+|+.+++.+...  +.  +|.+. +.+.       ..    .  ............+.++   ..   ...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            689999999999999988643  33  33332 2211       00    0  1111111111112222   11   234


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHH
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al  142 (221)
                      |+++-|+. +++....    ..+.++.|..+|....+.+...-+.++.|
T Consensus        86 ~vivd~t~-~~~~~~~----~~~aL~~G~hVVTANK~~la~~~~~~~~L  129 (168)
T d1ebfa1          86 VILVDNTS-SAYIAGF----YTKFVENGISIATPNKKAFSSDLATWKAL  129 (168)
T ss_dssp             EEEEECSC-CHHHHTT----HHHHHHTTCEEECCCCGGGSSCHHHHHHH
T ss_pred             eEEEEecC-ChHHHHH----HHHHHHcCCeEEecCcccccCCHHHHHHH
Confidence            55555554 3333322    23456788899988887776544445555

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.71  E-value=0.061  Score=36.79  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=28.4

Q ss_pred             CCEEEEEccCHHHHHHHHHHc---cCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLK---PFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~---~~G~~V~~~d~~~   69 (221)
                      .+++.|||.|.+|-.+|..+.   ..|.+|.++.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999997654   4588999988754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.65  E-value=0.053  Score=44.54  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEc
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD   66 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d   66 (221)
                      ||||.|.| .|.||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999 69999999999999999999997

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=92.45  E-value=0.11  Score=40.78  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cCce---ecCCHHhhc--CCCCEEEEeCCCCh
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAK---FEEDLDTML--PKCDIVVVNTPLTE  104 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~---~~~~l~ell--~~aDvVv~~~p~~~  104 (221)
                      ..|++|.=+|+|. |. ++..++..|.+|+++|.++...+.+++    .++.   ...+..+.+  ...|+|+....  .
T Consensus       119 ~~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~--~  194 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLY--A  194 (254)
T ss_dssp             CTTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECC--H
T ss_pred             CccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccc--c
Confidence            5789999999996 43 344566679999999998766554432    2332   234555554  46898887654  2


Q ss_pred             hhhhcchHHHHhcCCCCCEEEEcCCCCc-cCHHHHHHHHHhCCce
Q 027577          105 KTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (221)
Q Consensus       105 ~t~~~i~~~~~~~mk~ga~lIn~srg~~-vd~~al~~al~~g~i~  148 (221)
                      ....-+-++....||||..++-.+  -+ -+.+.+.+++++.+..
T Consensus       195 ~~l~~l~~~~~~~LkpGG~lilSg--il~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         195 ELHAALAPRYREALVPGGRALLTG--ILKDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE--EEGGGHHHHHHHHHHTTCE
T ss_pred             ccHHHHHHHHHHhcCCCcEEEEEe--cchhhHHHHHHHHHHCCCE
Confidence            221223345667899998877421  11 2466788888877655

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.29  E-value=0.084  Score=41.77  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=29.9

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |+|.|.| .|.||+.+++.|...|++|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6899998 69999999999998999999999754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.21  E-value=0.15  Score=36.39  Aligned_cols=39  Identities=15%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             cCCCCCEEEEE--ccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           32 YDLEGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        32 ~~l~g~~vgII--G~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      ...-++.+.|+  |.|.||-.+|..|..+|++|.++.+.+.
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            34567788777  8899999999999999999999998653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.096  Score=44.10  Aligned_cols=91  Identities=21%  Similarity=0.383  Sum_probs=57.4

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHHhc-----------Cc-------e----e--cCCHHhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKET-----------GA-------K----F--EEDLDTM   89 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~-----------g~-------~----~--~~~l~el   89 (221)
                      .|+++.=||+|. |..+...++.+|+ +|+++|.++...+.++..           +.       .    .  ....++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            478999999874 5556566666676 799999876433322210           00       0    0  1223567


Q ss_pred             cCCCCEEEEeCC-CChhhhhcchHHHHhcCCCCCEEEEc
Q 027577           90 LPKCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus        90 l~~aDvVv~~~p-~~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                      +..+|+|++..- ..++....+ .+.+..||||+.||..
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            788999987532 234444444 4678899999999864

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=1.3  Score=32.91  Aligned_cols=156  Identities=11%  Similarity=0.076  Sum_probs=92.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEE-EcCCCCC---------hhHHHhcCceec--C---C--HHhhc--CCCCEEE
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMD---------PQLEKETGAKFE--E---D--LDTML--PKCDIVV   97 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~---------~~~~~~~g~~~~--~---~--l~ell--~~aDvVv   97 (221)
                      |||.++|.+.+|..+.+.|...|.+|.+ +.....+         .+.+.+.++...  .   +  +.+.+  .++|+++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii   80 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIF   80 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccccee
Confidence            6899999999999999999988999754 4321111         123444455421  1   1  11222  3689988


Q ss_pred             EeCCCChhhhhcchHHHHhcCCCCCEEEEcC-----CCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCe
Q 027577           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (221)
Q Consensus        98 ~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s-----rg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~  172 (221)
                      ++--     ..++.++.++..+.+++=+..|     ||.-    .+.-++.+|.-. .++-++.-++.-..-+.+....+
T Consensus        81 ~~g~-----~~ii~~~il~~~~~~~iN~H~slLP~yrG~~----p~~wai~~g~~~-~G~Tih~i~~~iD~G~Il~q~~~  150 (203)
T d2blna2          81 SFYY-----RHLIYDEILQLAPAGAFNLHGSLLPKYRGRA----PLNWVLVNGETE-TGVTLHRMVKRADAGAIVAQLRI  150 (203)
T ss_dssp             EESC-----CSCCCHHHHTTCTTCEEEEESSCTTTTEESC----HHHHHHHTTCSE-EEEEEEECCSSTTCSCEEEEEEE
T ss_pred             eeec-----ccchhcccchhhHHHHHHHhhhcchhhhhhh----hhhhhhhccccc-ccceeEEeeccCCCccceeeccc
Confidence            7752     3577888888777666656655     5543    345555666433 34444444443334455555567


Q ss_pred             EECCCCCcCCHHHHHH----HHHHHHHHHHHcCC
Q 027577          173 AMTPHVSGTTIDLRYA----AGVKDMLDRYFKGE  202 (221)
Q Consensus       173 ~~tPH~a~~t~~~~~~----~~~~~~~~~~~~g~  202 (221)
                      -+.|.--..+...+..    ..+.+.+..+.+|+
T Consensus       151 ~i~~~~t~~~l~~k~~~~~~~l~~~~l~~i~~g~  184 (203)
T d2blna2         151 AIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGN  184 (203)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777654333333333    33567777788875

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.96  E-value=0.061  Score=39.96  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccC---CCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d~   67 (221)
                      +||||=|+|+||+.+.|.+...   ..+|.+.+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            4899999999999999987543   367777664

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.94  E-value=0.081  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      .|.|||.|..|-.+|..|+..|.+|.+++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            588999999999999999999999999997653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.047  Score=40.30  Aligned_cols=33  Identities=12%  Similarity=0.029  Sum_probs=30.2

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +++|.|||-|..|-..|..++.+|++|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            568999999999999999999999999999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.083  Score=39.50  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.73  E-value=0.079  Score=39.24  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccC--CCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~   69 (221)
                      |||.|||.|.+|-.+|..|+..  +.+|.++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999999999999999876  55788887643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.64  E-value=0.088  Score=42.18  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ...|.|||.|..|-.+|+.|+..|.+|.++++.+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4569999999999999999999999999999754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.62  E-value=0.083  Score=41.02  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|-+|.++|..|...|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8899999999999999999999999999753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.49  E-value=0.099  Score=40.21  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=26.3

Q ss_pred             EEEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|.| .+.||+++|+.|...|++|++.|++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            44557 57899999999999999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.47  E-value=0.08  Score=41.64  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             EEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      +|.|||.|-+|.++|..|...|. +|.++|+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999998996 699999763

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.19  Score=38.61  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             CCCCCEEEEEc-----------------cCHHHHHHHHHHccCCCeEEEEcCCC--CChhHHHhcCceecCC-------H
Q 027577           33 DLEGKTVGTVG-----------------CGRIGKLLLQRLKPFNCNLLYHDRVK--MDPQLEKETGAKFEED-------L   86 (221)
Q Consensus        33 ~l~g~~vgIIG-----------------~G~iG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~g~~~~~~-------l   86 (221)
                      +|.|++|.|-+                 -|.||.++|+.+..+|++|.++.-..  ..+..   ..+..+.+       .
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~---~~~~~~~t~~~m~~~~   79 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPF---VKRVDVMTALEMEAAV   79 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTT---EEEEECCSHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccc---cccceehhhHHHHHHH
Confidence            57777777654                 58899999999999999998876422  11111   11111222       2


Q ss_pred             HhhcCCCCEEEEeC
Q 027577           87 DTMLPKCDIVVVNT  100 (221)
Q Consensus        87 ~ell~~aDvVv~~~  100 (221)
                      .+.++++|+++.+.
T Consensus        80 ~~~~~~~D~~i~aA   93 (223)
T d1u7za_          80 NASVQQQNIFIGCA   93 (223)
T ss_dssp             HHHGGGCSEEEECC
T ss_pred             HhhhccceeEeeee
Confidence            34457899888765

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.39  E-value=0.11  Score=38.38  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=25.3

Q ss_pred             EEEEEccCHHHHHHHHHHcc---CCCeEEEEcCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKP---FNCNLLYHDRV   68 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~---~G~~V~~~d~~   68 (221)
                      ||||=|+|+||+.+.+.+..   .+.+|.+.+..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            79999999999999998753   35788777653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.33  E-value=0.096  Score=39.79  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.2

Q ss_pred             CCEEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        36 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      +|++.|-|. +.||+++|+.|...|++|++.+++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            467777784 78999999999999999999998754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.31  E-value=0.1  Score=40.04  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      +.||.|.| .|.||+++|+.|.+.|++|++.|++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            45788888 588999999999999999999998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.089  Score=41.32  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|..|-..|..|+..|++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998644

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.14  E-value=0.16  Score=36.08  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=27.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      .||.|||.|.+|-.+|..|+. +.+|.++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999999976 67999988643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.01  E-value=0.085  Score=39.02  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=30.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      ..++|.|||.|..|...|..+..+|++++++++.
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            3578999999999999999999999999999854

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.99  E-value=0.11  Score=39.59  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=29.5

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~   70 (221)
                      |.|||.|..|...|..|...|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999999999997653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.84  E-value=0.014  Score=44.26  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.7

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCe
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCN   61 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~   61 (221)
                      +||.|||.|-+|.+.|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            6899999999999999999988864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.67  E-value=0.22  Score=33.86  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=27.5

Q ss_pred             CCEEEEEccCHHHHHHHHHHccC---CCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d~~~   69 (221)
                      .+++.|||.|.+|-.+|..+.++   |.+|.++.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            47999999999999999766554   55798888654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.65  E-value=0.11  Score=39.34  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CCCEEEEEcc--CHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC----ce-ecCCHHh-hcCCCCEEEEeCCC
Q 027577           35 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AK-FEEDLDT-MLPKCDIVVVNTPL  102 (221)
Q Consensus        35 ~g~~vgIIG~--G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~-~~~~l~e-ll~~aDvVv~~~p~  102 (221)
                      .+.+|.=||+  |.+...+++.+...+.+|+++|.++...+.+++    .+    +. ...+..+ -...+|+|++..-+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            4778999998  677778888877789999999998654444432    11    11 1122222 12456777664321


Q ss_pred             ---ChhhhhcchHHHHhcCCCCCEEEEc
Q 027577          103 ---TEKTRGMFDKDRIAKMKKGVLIVNN  127 (221)
Q Consensus       103 ---~~~t~~~i~~~~~~~mk~ga~lIn~  127 (221)
                         +++...-+-++....||||..++-.
T Consensus       119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHhCCCCceeecc
Confidence               1122223445677889999888753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.59  E-value=0.072  Score=40.13  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=29.3

Q ss_pred             CEEEEEccCHHHHHHHHHHccCC-------CeEEEEcCCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM   70 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~   70 (221)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999997766       58999998653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.14  Score=38.38  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|..|...|..+...|++|.+++...
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999999754

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.16  Score=35.60  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             CCEEEEEccCHHHHHHHHHH----ccCCCeEEEEcCCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRL----KPFNCNLLYHDRVK   69 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l----~~~G~~V~~~d~~~   69 (221)
                      ++++.|||.|.+|-.+|..|    +..|.+|..+++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            67999999999999988777    45799999988754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.14  Score=37.75  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-CCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~~~   69 (221)
                      .||||=|+|+|||.+.|.+... .++|.+.+...
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            4799999999999999988655 57888877543

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=90.09  E-value=0.13  Score=38.01  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             CEEEEEccCHHHHHHHHHHcc----CCCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP----FNCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~----~G~~V~~~d~   67 (221)
                      .||||=|+|+||+.+.|.+..    ...+|.+.+.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            489999999999999998753    2456777765

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.06  E-value=0.56  Score=35.82  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CEEEEEcc-CHHHHHHHHHHc---cCCCeEEEEcCCCCCh
Q 027577           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP   72 (221)
Q Consensus        37 ~~vgIIG~-G~iG~~iA~~l~---~~G~~V~~~d~~~~~~   72 (221)
                      |||.|.|. +.||+++|+.|.   +.|++|++.+|+....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~   42 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA   42 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            78999996 689999999884   5689999999976544

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.06  E-value=0.16  Score=40.70  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      -|+|.|.| .|.||+.+++.|...|++|+++|+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            47899988 7999999999999999999999863

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.99  E-value=0.11  Score=38.64  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=28.7

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|..|...|..+..+|.+|.+++...
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.062  Score=41.08  Aligned_cols=39  Identities=13%  Similarity=0.068  Sum_probs=30.1

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL   74 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~   74 (221)
                      ..|.+|..+|||. |+ .+..|...|++|+++|.++...+.
T Consensus        44 ~~~~rvLd~GCG~-G~-~a~~LA~~G~~V~gvD~S~~ai~~   82 (229)
T d2bzga1          44 KSGLRVFFPLCGK-AV-EMKWFADRGHSVVGVEISELGIQE   82 (229)
T ss_dssp             CCSCEEEETTCTT-CT-HHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEeCCCC-cH-HHHHHHhCCCcEEEEeCCHHHHHH
Confidence            3688999999998 43 456667789999999997654443

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.93  E-value=0.17  Score=37.75  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=31.5

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      .++.||+|.|||.|.-|..+|..+...+.++...-++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4689999999999999999999998888876665544

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.16  Score=40.58  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=28.9

Q ss_pred             CEE-EEEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTV-GTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~v-gIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      ||| .|.| .|.||+.+++.|...|++|+++|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            678 5777 69999999999999999999999854

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.17  Score=36.49  Aligned_cols=30  Identities=17%  Similarity=-0.034  Sum_probs=27.9

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |.|||.|..|-..|..+..+|++|.++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.11  Score=41.83  Aligned_cols=113  Identities=9%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh---HHHhc----Cc-eecCCHH
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ---LEKET----GA-KFEEDLD   87 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~---~~~~~----g~-~~~~~l~   87 (221)
                      +..|...||.|.|.|.-|-.+|+.+...    |+       +++.+|+...    ..+   ..+..    .. ....+++
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~   99 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE   99 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence            3468889999999999999999887543    43       4888887531    100   00110    00 1124688


Q ss_pred             hhcC--CCCEEEEeCCCChhhhhcchHHHHh---cCCCCCEEEEcCCCCcc---CHHHHHHHHHhCCce
Q 027577           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNARGAIM---DTQAVVDACSSGHIA  148 (221)
Q Consensus        88 ell~--~aDvVv~~~p~~~~t~~~i~~~~~~---~mk~ga~lIn~srg~~v---d~~al~~al~~g~i~  148 (221)
                      ++++  +.|+++-+..    ..+++.++.++   .|.+..+|.-.|.-..-   ..++.++ ..+|+..
T Consensus       100 e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~-~t~grai  163 (294)
T d1pj3a1         100 DAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYT-LTEGRCL  163 (294)
T ss_dssp             HHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHH-HTTTCCE
T ss_pred             HHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHh-hccCceE
Confidence            8775  6787766552    23566776664   45688999999876543   2333333 3455555

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.79  E-value=0.26  Score=36.11  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=25.2

Q ss_pred             EEEEEccCHHHHHHHHHHccC-CCeEEEEcC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (221)
                      ||||=|+|+||+.+.+.+... ..+|.+.+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988654 678877764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.62  E-value=0.14  Score=39.55  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=26.2

Q ss_pred             CEEE-EEcc-CHHHHHHHHHHccCCCe-------EEEEcCCC
Q 027577           37 KTVG-TVGC-GRIGKLLLQRLKPFNCN-------LLYHDRVK   69 (221)
Q Consensus        37 ~~vg-IIG~-G~iG~~iA~~l~~~G~~-------V~~~d~~~   69 (221)
                      |+|. |-|. +.||+++|+.|...|++       |+.++++.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            5655 4474 67999999999999987       88888864

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=89.60  E-value=0.3  Score=35.87  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             CEEEEEccCHHHHHHHHHHcc-CCCeEEEEcC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR   67 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~   67 (221)
                      -||||=|+|+||+.+.+.+.. -..+|.+.+.
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            389999999999999997754 4578777764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=0.34  Score=33.50  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +....||+|+|||.|..+-.-|..|..+.-+|+++-|..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            445689999999999999999999999999999988754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.18  E-value=0.19  Score=39.70  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             EEEEEccCHHHHHHHHHHc-----cCCCeEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLK-----PFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~-----~~G~~V~~~d~~~   69 (221)
                      -|.|||.|..|..+|..|.     ..|.+|.++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4899999999999999994     5799999999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.13  E-value=0.34  Score=36.63  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHc--------------------cCCC-eEEEEcCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLK--------------------PFNC-NLLYHDRVK   69 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~--------------------~~G~-~V~~~d~~~   69 (221)
                      ...+.|++|.|||-|+++.-+|+.+.                    ..|. +|..+.|+.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            45688999999999999999999775                    5666 487777654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.11  E-value=0.28  Score=37.37  Aligned_cols=64  Identities=16%  Similarity=0.045  Sum_probs=42.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHcc--------------------CCC-eEEEEcCCCCChhHHHhcCceecCCHHhh
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP--------------------FNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTM   89 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~--------------------~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~el   89 (221)
                      ...+.|++|.|||-|+++.-+|+.|..                    .|. +|..+.|+....     .-+. ...+.++
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~-----~~ft-~~Elre~  107 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ-----VAFT-IKELREM  107 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG-----CCCC-HHHHHHH
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh-----CCCC-chhhhcc
Confidence            456889999999999999999998876                    465 488887754211     0011 1234556


Q ss_pred             cCCCCEEEEeC
Q 027577           90 LPKCDIVVVNT  100 (221)
Q Consensus        90 l~~aDvVv~~~  100 (221)
                      .+..++.+..-
T Consensus       108 ~~~~~~~~~~~  118 (225)
T d1cjca1         108 IQLPGTRPMLD  118 (225)
T ss_dssp             HTCTTEEEECC
T ss_pred             cccCCCcceec
Confidence            66666655443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.05  E-value=0.21  Score=37.53  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |.|||.|..|...|..++.+|++|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999854

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.97  E-value=0.21  Score=39.53  Aligned_cols=32  Identities=22%  Similarity=0.072  Sum_probs=28.8

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |++.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            6777788 6999999999999999999999974

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.19  Score=40.15  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDR   67 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~   67 (221)
                      .|||.|.| .|-||+.+++.|...|.+|++.|+
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            37899998 799999999999999999999974

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.80  E-value=0.26  Score=35.38  Aligned_cols=34  Identities=12%  Similarity=-0.036  Sum_probs=28.6

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCe-EEEEcCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~   68 (221)
                      .+++|.|||-|..|...|..+..+|++ |..+.|.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            467899999999999999999999876 6666554

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.8  Score=31.49  Aligned_cols=105  Identities=12%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      ++.||.+-|. |.-|+..++.+.++|-+|. +..+...-.   ...|+..+++.+|+.+  .+|.=++-+|..-     .
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~---~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~-----a   76 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPAPF-----C   76 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTE---EETTEEEESSHHHHHHHHCCCEEEECCCGGG-----H
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCc---ccCCCchhhHHHHHHHHhCCCeEEEeccHHH-----H
Confidence            3568999997 9999999999999999965 566643221   2347888889988775  5888888888222     2


Q ss_pred             hHHHHhcCCCC-CEEEEcC-CCCccCHHHHHHHHHhCCc
Q 027577          111 DKDRIAKMKKG-VLIVNNA-RGAIMDTQAVVDACSSGHI  147 (221)
Q Consensus       111 ~~~~~~~mk~g-a~lIn~s-rg~~vd~~al~~al~~g~i  147 (221)
                      ....++.+..| ..+|-++ .-.+.|.-.+.+.++....
T Consensus        77 ~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~  115 (119)
T d2nu7a1          77 KDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGV  115 (119)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCC
Confidence            22333444333 2444444 4455677777766665443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.14  Score=36.52  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=26.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCe
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN   61 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~   61 (221)
                      .-.|++|.|||.|.+|..+|..+...|.+
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            34589999999999999999999999975

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.46  E-value=0.22  Score=38.11  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~   71 (221)
                      .|.|||.|..|...|..|...|.+|.++++.+..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4889999999999999999999999999986543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.25  Score=38.81  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=29.2

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      -|||.|.| .|.||+.+++.|...|..+++.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            47899998 6999999999999999998888754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.12  E-value=0.23  Score=37.32  Aligned_cols=32  Identities=19%  Similarity=0.059  Sum_probs=29.2

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -|.|||.|..|...|..+..+|.+|.++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.01  E-value=0.19  Score=37.53  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      ..|.|||.|..|...|..++.+|.+|.+++..
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35889999999999999999999999999864

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.95  E-value=0.26  Score=36.31  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             EEEEEccCHHHHHHHHHHccC-CCeEEEEcC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~-G~~V~~~d~   67 (221)
                      ||||=|+|+||+.+.+.+... ..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            799999999999999988644 578877775

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.27  Score=36.50  Aligned_cols=30  Identities=13%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +.|||.|..|...|..+..+|.+|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.79  Score=37.55  Aligned_cols=96  Identities=13%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh------hHHH--hcCceec----------CCHHhhcCCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP------QLEK--ETGAKFE----------EDLDTMLPKCD   94 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~------~~~~--~~g~~~~----------~~l~ell~~aD   94 (221)
                      -|.|-||.=++-+..|-..++.|..+|.+|+=+.+.....      ....  ..|-+.+          .-+.+++++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            3899999999988888888899999999999887633110      1111  1122211          12568999999


Q ss_pred             EEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        95 vVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      ||+-..+...--+-=++.+.+..++|.-+.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998776333333336778899999999998885

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.90  E-value=1.9  Score=29.59  Aligned_cols=105  Identities=15%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeCCCChhhhhcc
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~p~~~~t~~~i  110 (221)
                      ++.||.|-|. |..|+..++.+..+|-+|. +..+...-.+   -.++..+++.+|+.+  .+|.=++.+|.. ..    
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~---~~giPVf~tV~eAv~~~~~d~SvIfVPp~-~a----   77 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME---VLGVPVYDTVKEAVAHHEVDASIIFVPAP-AA----   77 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHSCCSEEEECCCHH-HH----
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcE---EECCchHhhHHHHHHhcCCeEEEEeeCHH-HH----
Confidence            3568999996 9999999999999999855 5665332111   236777888888774  589999999921 11    


Q ss_pred             hHHHHhcCCCC-CEEEEcCCC-CccCHHHHHHHHHhCCc
Q 027577          111 DKDRIAKMKKG-VLIVNNARG-AIMDTQAVVDACSSGHI  147 (221)
Q Consensus       111 ~~~~~~~mk~g-a~lIn~srg-~~vd~~al~~al~~g~i  147 (221)
                      ....++.+..| ..+|-++-| .+.|.-.+.+.++....
T Consensus        78 ~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~  116 (121)
T d1oi7a1          78 ADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS  116 (121)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Confidence            12223333333 245555544 55676667776665443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=86.64  E-value=0.16  Score=36.79  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=29.4

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   76 (221)
                      ..|++|..+|+|. |+ .+..|...|++|+++|.++...+.++
T Consensus        19 ~~~~rvLd~GCG~-G~-~a~~la~~G~~V~gvD~S~~~i~~a~   59 (201)
T d1pjza_          19 VPGARVLVPLCGK-SQ-DMSWLSGQGYHVVGAELSEAAVERYF   59 (201)
T ss_dssp             CTTCEEEETTTCC-SH-HHHHHHHHCCEEEEEEECHHHHHHHH
T ss_pred             CCCCEEEEecCcC-CH-HHHHHHHcCCceEeecccHHHHHHHH
Confidence            4689999999986 33 34455556999999999865444443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.61  E-value=0.33  Score=35.78  Aligned_cols=31  Identities=16%  Similarity=0.140  Sum_probs=28.4

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      -|.|||.|..|...|..+++.|.+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            3789999999999999999999999999864

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.32  E-value=0.54  Score=35.10  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             CEEEEEccCHHHHHHHHHHccC-----CCeEEEEc
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPF-----NCNLLYHD   66 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~-----G~~V~~~d   66 (221)
                      .+|||=|+|+||+.+.+.+...     ..+|.+++
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~In   37 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVV   37 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence            5899999999999999977433     24566544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.12  E-value=0.43  Score=36.78  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHcc---CCCeEEEEcCCCC
Q 027577           33 DLEGKTVGTVGC-GRIGKLLLQRLKP---FNCNLLYHDRVKM   70 (221)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~iA~~l~~---~G~~V~~~d~~~~   70 (221)
                      .|.||.+.|-|. +.||+++|+.|..   .|++|++.+|+..
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~   44 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES   44 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH
Confidence            478887777786 5799999999864   6999999998653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.12  E-value=0.34  Score=37.60  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHcc-CCCeEEEEcCCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVK   69 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~   69 (221)
                      ...-|.|||.|.-|-..|..|.. .|++|.++++.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            35569999999999999999865 699999999764

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=85.97  E-value=1.1  Score=36.86  Aligned_cols=95  Identities=19%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCCh--------------hHHHhc--Ccee--c--------CCHH
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--------------QLEKET--GAKF--E--------EDLD   87 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~--------------~~~~~~--g~~~--~--------~~l~   87 (221)
                      |.|-||.=++-...|-..++.|..+|.+|+=+++.....              ..+...  |-+.  .        .-+.
T Consensus         4 L~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~~   83 (427)
T d2vjma1           4 LDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELLE   83 (427)
T ss_dssp             TTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHHH
Confidence            889999888887788888899999999999988532100              011111  1110  1        1256


Q ss_pred             hhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        88 ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +++++||||+-..+...--+-=++.+.+...+|.-+.+.++
T Consensus        84 ~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          84 QMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            88999999998876333223336788889999999998885

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.77  E-value=0.2  Score=40.19  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.3

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCCe--EEEEcC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDR   67 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~~--V~~~d~   67 (221)
                      -|+|.|.| .|.||+.+++.|...|++  |++.|.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            37899999 799999999999887765  556653

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.75  E-value=1.5  Score=35.05  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChh-H--HHhcCcee----------cCCHHhhcCCCCEEEEeC
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-L--EKETGAKF----------EEDLDTMLPKCDIVVVNT  100 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~-~--~~~~g~~~----------~~~l~ell~~aDvVv~~~  100 (221)
                      |.|-||.=++-+--|-..++.|..+|.+|+=+.+...... .  ....|-+.          ..-+.+++++||||+-..
T Consensus         4 L~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n~   83 (359)
T d1x74a1           4 LSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGY   83 (359)
T ss_dssp             TTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEECS
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEecC
Confidence            8899998888888888889999999999998876321111 0  00111111          123568899999999877


Q ss_pred             CCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus       101 p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      +...-.+-=++.+.+...+|.-+.+.++
T Consensus        84 ~pg~~~~lgl~~~~l~~~nP~lI~~sis  111 (359)
T d1x74a1          84 RPGVTERLGLGPEECAKVNDRLIYARMT  111 (359)
T ss_dssp             CTTHHHHHTCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCchhhcCCCHHHHHhhcCCceEEEEe
Confidence            6333333336888889999999999984

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.72  E-value=0.37  Score=37.71  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=29.5

Q ss_pred             EEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -|.|||.|..|...|..|...|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            38999999999999999999999999999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.63  E-value=0.3  Score=40.24  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             CEEEEEccCHHHHHHHHHHcc------CCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKP------FNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~------~G~~V~~~d~~~   69 (221)
                      --|.|||.|.-|.+.|..|++      .|++|+++++..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            359999999999999998875      799999999764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.40  E-value=0.35  Score=36.74  Aligned_cols=91  Identities=18%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC--cee-cCCHHhh--cCCCCEEEEeCCC-
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AKF-EEDLDTM--LPKCDIVVVNTPL-  102 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~~-~~~l~el--l~~aDvVv~~~p~-  102 (221)
                      .+.+++|.=||+|. |+ ++..+...|.+|+++|.++...+.+++    .+  +.. ..+..++  -+..|+|++.... 
T Consensus        35 ~~~~~~vLDiGCG~-G~-~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          35 NLVFDDYLDLACGT-GN-LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDST  112 (246)
T ss_dssp             TCCTTEEEEETCTT-ST-THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred             CCCCCeEEEEeCcC-CH-HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeee
Confidence            46688999999984 33 455566678999999997644333322    22  322 2344443  2346988763210 


Q ss_pred             ----ChhhhhcchHHHHhcCCCCCEEE
Q 027577          103 ----TEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       103 ----~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                          +++...-+-+...+.||||..+|
T Consensus       113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_         113 NYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence                11111113345677788876655

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=85.13  E-value=0.42  Score=38.49  Aligned_cols=98  Identities=9%  Similarity=0.082  Sum_probs=58.6

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh--HHH-hc--CceecCCHHhhc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ--LEK-ET--GAKFEEDLDTML   90 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~--~~~-~~--g~~~~~~l~ell   90 (221)
                      +..|...||.|.|.|.-|..+|+.+...    |.       +++.+|+...    ..+  ..+ .+  ......++.+++
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i   99 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVI   99 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHH
Confidence            3468889999999999999988887543    43       4888887531    100  000 00  111223566655


Q ss_pred             CC--CCEEEEeCCCChhhhhcchHHHHhcC---CCCCEEEEcCCCCc
Q 027577           91 PK--CDIVVVNTPLTEKTRGMFDKDRIAKM---KKGVLIVNNARGAI  132 (221)
Q Consensus        91 ~~--aDvVv~~~p~~~~t~~~i~~~~~~~m---k~ga~lIn~srg~~  132 (221)
                      +.  .++++-+..    ..+++.++.++.|   .+..+|.=.|.-..
T Consensus       100 ~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         100 RAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccCCCC
Confidence            42  355554432    2456666666555   47888888887654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.09  E-value=0.2  Score=38.61  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=36.1

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC--CCCEEEEeC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNT  100 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVv~~~  100 (221)
                      |||.|.| .|.||+.+++.|...|.. ++.+++.....    ..+.-...++++++  +.|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~~~----~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKEFC----GDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSSSC----CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcccc----CcCCCHHHHHHHHHHcCCCEEEEec
Confidence            6899999 599999999999988864 45554332110    01111123445554  458887654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=85.06  E-value=0.41  Score=36.71  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +.|||.|..|...|..++..|.+|.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            679999999999999999999999999974

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.03  E-value=0.47  Score=37.81  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             CEEEEEc-cCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |.|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            6777887 6999999999999999999999853

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.00  E-value=0.51  Score=30.93  Aligned_cols=32  Identities=9%  Similarity=0.034  Sum_probs=27.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      +||.|||-|.--.++|..|+....+++++--+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN   32 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGN   32 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCC
Confidence            68999999999999999998888888877433

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.96  E-value=0.44  Score=35.99  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             CCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC--ce-ecCCHHhhc--CCCCEEEEeCC---
Q 027577           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AK-FEEDLDTML--PKCDIVVVNTP---  101 (221)
Q Consensus        34 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~-~~~~l~ell--~~aDvVv~~~p---  101 (221)
                      -.+++|.=||+|. |.. +..|...|.+|+++|.++...+.+++    .+  +. ...+.+++-  ...|+|++..-   
T Consensus        40 ~~~~~iLDiGcGt-G~~-~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGT-GIP-TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTT-CHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCC-Ccc-chhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhh
Confidence            3467999999986 543 44566678999999998644443332    22  22 123444332  35688776421   


Q ss_pred             -CChhhhhcchHHHHhcCCCCCEEE
Q 027577          102 -LTEKTRGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       102 -~~~~t~~~i~~~~~~~mk~ga~lI  125 (221)
                       .+......+-......||||.++|
T Consensus       118 ~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         118 YFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHcCCCcEEE
Confidence             111111123345667788887665

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.66  E-value=0.69  Score=31.82  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=34.1

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      +....||+|.|||.|.-+-.-|..|..+.-+|+++-|.+
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456789999999999999999999999988898887643

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.33  E-value=0.82  Score=31.55  Aligned_cols=37  Identities=8%  Similarity=-0.002  Sum_probs=30.7

Q ss_pred             CCCEEEEEccCH-----------HHHHHHHHHccCCCeEEEEcCCCCC
Q 027577           35 EGKTVGTVGCGR-----------IGKLLLQRLKPFNCNLLYHDRVKMD   71 (221)
Q Consensus        35 ~g~~vgIIG~G~-----------iG~~iA~~l~~~G~~V~~~d~~~~~   71 (221)
                      ..++|.|||.|.           .+...++.|+..|++++..|.++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            367999999885           4667789999999999999987743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=84.23  E-value=0.16  Score=38.26  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCce--ecCCHHhh-c--CCCCEEEEeCCC---Chhh
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTM-L--PKCDIVVVNTPL---TEKT  106 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~el-l--~~aDvVv~~~p~---~~~t  106 (221)
                      .+++|.=||+| -|. .+..+...|.+|+++|.++...+.+++.+..  ...+.+++ +  ...|+|+..-..   -++.
T Consensus        42 ~~~~vLDiGcG-~G~-~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGG-TGK-WSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCT-TCH-HHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCC-Cch-hcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            57899999998 343 3345556799999999987555555554321  12233333 2  346877653221   0011


Q ss_pred             hhcchHHHHhcCCCCCEEE
Q 027577          107 RGMFDKDRIAKMKKGVLIV  125 (221)
Q Consensus       107 ~~~i~~~~~~~mk~ga~lI  125 (221)
                      .. +-++....||||.+++
T Consensus       120 ~~-~l~~i~r~Lk~gG~~i  137 (246)
T d2avna1         120 DK-AFSEIRRVLVPDGLLI  137 (246)
T ss_dssp             HH-HHHHHHHHEEEEEEEE
T ss_pred             HH-HHHHHHhhcCcCcEEE
Confidence            11 2245667889987665

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.3  Score=42.29  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=33.3

Q ss_pred             cCCCCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCC
Q 027577           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (221)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~   69 (221)
                      ..|...+|.|||+|.+|..+++.|...|. ++.++|...
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            36889999999999999999999998897 588888653

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.91  E-value=6.2  Score=28.80  Aligned_cols=157  Identities=15%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEE-EcCCCCC------------hhHHHhcCceec-------CCHHhhc--CCC
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMD------------PQLEKETGAKFE-------EDLDTML--PKC   93 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~-~d~~~~~------------~~~~~~~g~~~~-------~~l~ell--~~a   93 (221)
                      .+||.++|.+..+..+.+.|...|.+|.+ +......            ...+...++...       ....+.+  .+.
T Consensus         3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (206)
T d1fmta2           3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQA   82 (206)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhhcc
Confidence            57899999999999999999888988654 4321111            012222333221       1112223  257


Q ss_pred             CEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC-----CCCccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCC
Q 027577           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY  168 (221)
Q Consensus        94 DvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s-----rg~~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~  168 (221)
                      |+++++-.     ..++..+.++..+-|++=+.-|     ||.    ..+.-++.+|.-. .++-++.-.+--..-+++.
T Consensus        83 d~~v~~~~-----~~ii~~~il~~~k~g~iN~Hps~LP~yRG~----~pi~wai~nge~~-~GvT~h~i~~~iD~G~Ii~  152 (206)
T d1fmta2          83 DVMVVVAY-----GLILPKAVLEMPRLGCINVHGSLLPRWRGA----APIQRSLWAGDAE-TGVTIMQMDVGLDTGDMLY  152 (206)
T ss_dssp             SEEEEESC-----CSCCCHHHHHSSTTCEEEEESSSTTTTBSS----CHHHHHHHHTCSE-EEEEEEECCSSSSCSCEEE
T ss_pred             eEEEeecc-----ccccchhhHhcCCCCeeecCchhhHhhhhh----hhhhhHHHcCCce-eceeEEEeccccChHHhhh
Confidence            88877654     4678888888888888877777     565    3466677777654 3455544443333335555


Q ss_pred             CCCeEECCCCCcCCHHHHHH----HHHHHHHHHHHcCC
Q 027577          169 MPNQAMTPHVSGTTIDLRYA----AGVKDMLDRYFKGE  202 (221)
Q Consensus       169 ~~n~~~tPH~a~~t~~~~~~----~~~~~~~~~~~~g~  202 (221)
                      ...+-+.|---..+...++.    ..+.+.+..+.+|+
T Consensus       153 q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~~~  190 (206)
T d1fmta2         153 KLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGT  190 (206)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45566666432222223332    33566777788876

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.25  E-value=0.42  Score=35.19  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~   68 (221)
                      |.|||.|.-|...|..+...|.+|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=83.10  E-value=0.97  Score=35.01  Aligned_cols=106  Identities=16%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             CCCEEEEEccCH--HHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC----ce-ecCCHHhhcC--CCCEEEEeCC
Q 027577           35 EGKTVGTVGCGR--IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AK-FEEDLDTMLP--KCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~--iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~-~~~~l~ell~--~aDvVv~~~p  101 (221)
                      .|++|.=+|+|.  +...+|+.+... .+|+.+|.++...+.+++    .+    +. ...++.+.+.  ..|.|++.+|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            589999999765  555666666443 489999987644433332    11    22 1234555443  3799999988


Q ss_pred             CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCC
Q 027577          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (221)
Q Consensus       102 ~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~  146 (221)
                      ...   . +-+.....||||..++-..- .+-....+.++|++..
T Consensus       164 ~p~---~-~l~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~g  203 (250)
T d1yb2a1         164 DPW---N-HVQKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASG  203 (250)
T ss_dssp             CGG---G-SHHHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGT
T ss_pred             chH---H-HHHHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCC
Confidence            332   2 33557788999998875311 1112355667776554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=83.10  E-value=0.58  Score=36.90  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |.|||.|..|...|..|...|.+|+++++.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.52  E-value=0.2  Score=36.30  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=22.5

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCe
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCN   61 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~   61 (221)
                      .+|.|||.|.+|-.+|..|+.+|.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~   28 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQ   28 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCc
Confidence            4599999999999999999988865

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.41  E-value=0.78  Score=36.97  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             CCCEEEEEc-cCHHHHHHHHHHc-cCCCeEEEEcC
Q 027577           35 EGKTVGTVG-CGRIGKLLLQRLK-PFNCNLLYHDR   67 (221)
Q Consensus        35 ~g~~vgIIG-~G~iG~~iA~~l~-~~G~~V~~~d~   67 (221)
                      ++|||.|.| .|-||+.+++.|. ..|++|+++|.
T Consensus         1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            478999998 6999999999885 57999999974

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.23  E-value=0.84  Score=36.46  Aligned_cols=113  Identities=11%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHccC----CC-------eEEEEcCCCC----Chh---HHHhc--CceecCCHHhhc
Q 027577           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM----DPQ---LEKET--GAKFEEDLDTML   90 (221)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~----G~-------~V~~~d~~~~----~~~---~~~~~--g~~~~~~l~ell   90 (221)
                      +..|...||.|.|.|.-|..+|+.+...    |+       +++.+|+...    ..+   ....+  ......++++++
T Consensus        20 gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i   99 (298)
T d1gq2a1          20 KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIV   99 (298)
T ss_dssp             TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHh
Confidence            4568899999999999999998887533    32       5888887531    100   00010  111224566666


Q ss_pred             CC--CCEEEEeCCCChhhhhcchHHHHh---cCCCCCEEEEcCCCCcc---CHHHHHHHHHhCCce
Q 027577           91 PK--CDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNARGAIM---DTQAVVDACSSGHIA  148 (221)
Q Consensus        91 ~~--aDvVv~~~p~~~~t~~~i~~~~~~---~mk~ga~lIn~srg~~v---d~~al~~al~~g~i~  148 (221)
                      +.  .++++-+..    .-+.+.++.++   .|.+..+|.=.|.-..-   +.++.+++- +|+..
T Consensus       100 ~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt-~G~ai  160 (298)
T d1gq2a1         100 KDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYT-EGRGI  160 (298)
T ss_dssp             HHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHT-TTCCE
T ss_pred             hccChheeEeccc----ccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhc-ccceE
Confidence            43  556655542    23567666555   56688898888875442   333444443 44444

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=82.04  E-value=0.5  Score=36.13  Aligned_cols=109  Identities=14%  Similarity=0.242  Sum_probs=61.8

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC----cee-cCCH-Hh---hcCCCCEEEEeCC
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AKF-EEDL-DT---MLPKCDIVVVNTP  101 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~~-~~~l-~e---ll~~aDvVv~~~p  101 (221)
                      .|++|.=||+|. |.-+.+.++....+|+++|.++...+.+++    .+    +.. ..+. .+   .-...|+|++..-
T Consensus        24 ~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          24 RGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             TTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            488999999998 544444444433579999998654444432    12    111 1122 11   1235899876432


Q ss_pred             -----CChhhhhcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHHhCCce
Q 027577          102 -----LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (221)
Q Consensus       102 -----~~~~t~~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~~g~i~  148 (221)
                           .+++....+-......||||.++|=+    ..|.+.+.+.+..+.+.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~----~~~~~~i~~~~~~~~~~  150 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT----VPSRDVILERYKQGRMS  150 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE----EECHHHHHHHHHHTCCB
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEE----ecCHHHHHHHHHhcccC
Confidence                 12222112224455678998877643    34667788888777653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=82.03  E-value=0.65  Score=36.73  Aligned_cols=29  Identities=28%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             EEEEccCHHHHHHHHHHccCCCeEEEEcC
Q 027577           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDR   67 (221)
Q Consensus        39 vgIIG~G~iG~~iA~~l~~~G~~V~~~d~   67 (221)
                      +.|||.|.-|..+|.+|...|.+|++...
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            78999999999999999999999999985

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.98  E-value=1.7  Score=34.64  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=65.2

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCC-eEEEEcCCCCChhHHH----hcCce-----ecCCHHhhc-------CCCCEEE
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----ETGAK-----FEEDLDTML-------PKCDIVV   97 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~----~~g~~-----~~~~l~ell-------~~aDvVv   97 (221)
                      .|++|.=+|+|.=|.+++-...  |. +|+.+|.++...+.++    ..|+.     ...+..+.+       ...|+|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            3899998887766655543322  43 7999999765444332    23331     113332221       3579999


Q ss_pred             EeCCCChhhh----------hcchHHHHhcCCCCCEEEEcCCCCccCHHHHHHHHH
Q 027577           98 VNTPLTEKTR----------GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (221)
Q Consensus        98 ~~~p~~~~t~----------~~i~~~~~~~mk~ga~lIn~srg~~vd~~al~~al~  143 (221)
                      +-.|......          .-+....+..++||.+++-++-...++.+.+.+.+.
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~  278 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMII  278 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHH
Confidence            9888543211          113445677899999988777666788888766543

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=81.30  E-value=1.2  Score=36.52  Aligned_cols=96  Identities=17%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCC-Ch-------------hHHHhc--Ccee----------cCCH
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-------------QLEKET--GAKF----------EEDL   86 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~-~~-------------~~~~~~--g~~~----------~~~l   86 (221)
                      -|.|-||.=++-...|-..++.|..+|.+|+=+.+... ..             ..+...  |-+.          .+-+
T Consensus         4 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   83 (417)
T d1q7ea_           4 PLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVM   83 (417)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            38899998888888888888999999999998885221 00             011111  1111          1234


Q ss_pred             HhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcC
Q 027577           87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (221)
Q Consensus        87 ~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~s  128 (221)
                      .+++++||||+-..+...--+-=++.+.+...+|.-+.+.++
T Consensus        84 ~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sis  125 (417)
T d1q7ea_          84 EKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK  125 (417)
T ss_dssp             HHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhcCcccEeccCCCcHhhcCCCHHHHHhhCCCEEEEeee
Confidence            578999999998876332222236778888899999998885

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.13  E-value=1.1  Score=33.20  Aligned_cols=31  Identities=10%  Similarity=0.318  Sum_probs=26.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCCeEEEEc
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHD   66 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d   66 (221)
                      +.+|||||-+ |++ +++++.+...|+++...+
T Consensus         5 ~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~   36 (202)
T d1q7ra_           5 SNMKIGVLGLQGAV-REHVRAIEACGAEAVIVK   36 (202)
T ss_dssp             CCCEEEEESCGGGC-HHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEEECCCCH-HHHHHHHHHCCCcEEEEC
Confidence            5789999999 888 778899999999987775

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.07  E-value=0.83  Score=35.14  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=25.9

Q ss_pred             EEEEE-c-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           38 TVGTV-G-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        38 ~vgII-G-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -|+|| | .+.||+++|+.|...|++|++.+++.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            36666 5 57899999999999999998876543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.74  E-value=1.5  Score=30.26  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -..||+|.|||.|.-+-.-|..|..+--+|+++-|..
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            3579999999999999999999999989999987754

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=80.64  E-value=0.82  Score=37.92  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             CCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHH---hhc-CCCCEEEEeCCCChhhhhcch
Q 027577           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD---TML-PKCDIVVVNTPLTEKTRGMFD  111 (221)
Q Consensus        36 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~---ell-~~aDvVv~~~p~~~~t~~~i~  111 (221)
                      ...|.+.|.|.-|+.+++.|++.|.+|+++...........-.|++.. +.+   +.. ...++|++.++..+.....+.
T Consensus        38 ~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~-s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  116 (395)
T d2py6a1          38 ATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPII-STDRFTELATHDRDLVALNTCRYDGPKRFFD  116 (395)
T ss_dssp             GCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEE-CHHHHHHHHHTCTTEEEEECCCSHHHHHHHH
T ss_pred             CceEEEEcCchhHHHHHHHHHHCCceEEEEecCchhhcCceecceEee-cHHHhhhhhhccCcEEEEEeccccchhhHHH
Confidence            347999999999999999999999998877543321111122356655 444   333 578889888887666555544


Q ss_pred             H
Q 027577          112 K  112 (221)
Q Consensus       112 ~  112 (221)
                      +
T Consensus       117 ~  117 (395)
T d2py6a1         117 Q  117 (395)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.60  E-value=0.92  Score=34.56  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             CCCEEEEEcc-CHHHHHHHHHHccCCC--eEEEEcCCCCCh
Q 027577           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP   72 (221)
Q Consensus        35 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~   72 (221)
                      +.|+|.|.|. +.||+++|+.|...|+  +|++..|+....
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~   42 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA   42 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH
Confidence            3588988884 7899999999998885  687778765433

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=80.58  E-value=0.68  Score=35.40  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=27.9

Q ss_pred             CCEEEEEc-cCHHHHHHHHHHccCCC-eEEEEcCC
Q 027577           36 GKTVGTVG-CGRIGKLLLQRLKPFNC-NLLYHDRV   68 (221)
Q Consensus        36 g~~vgIIG-~G~iG~~iA~~l~~~G~-~V~~~d~~   68 (221)
                      +.++.|.| .|.||+++|+.|...|. +|++..|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45899999 68999999999999998 47777765

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=80.44  E-value=8.7  Score=28.07  Aligned_cols=126  Identities=25%  Similarity=0.344  Sum_probs=74.2

Q ss_pred             HHHHHHccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCCCCEEEEeCCCChhhhhcchHHHHhcCCCCCEEEEcCC
Q 027577           50 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (221)
Q Consensus        50 ~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVv~~~p~~~~t~~~i~~~~~~~mk~ga~lIn~sr  129 (221)
                      .+.+.|...|++++.++......           ..+++-+.++|+|++.- ..   ...++++.++..++=.+++..+.
T Consensus        58 glr~~Le~~GhelV~~sd~~~~~-----------~el~k~l~DADivI~~p-f~---~~~lt~e~i~~ap~LKlI~~~g~  122 (186)
T d2naca2          58 GLRKYLESNGHTLVVTSDKDGPD-----------SVFERELVDADVVISQP-FW---PAYLTPERIAKAKNLKLALTAGI  122 (186)
T ss_dssp             GCHHHHHHTTCEEEEESCCSSTT-----------SHHHHHHTTCSEEEEBT-TB---CCCBCHHHHHHCTTCCEEEESSS
T ss_pred             hHHHHHHHCCCEEEEecCCCCCh-----------HHHHhhcccCCEEEEec-cc---ccccCHHHHhcCccceEEEEecc
Confidence            35678899999998887543221           24667788999998752 10   12477888888887778888877


Q ss_pred             CC-ccCHHHHHHHHHhCCceEEEeeCCCCCCCCCCCCCCCCCCeEECCCCCcCCHH--HHHHHHHHHHHHHHHcCCCCCC
Q 027577          130 GA-IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID--LRYAAGVKDMLDRYFKGEDFPV  206 (221)
Q Consensus       130 g~-~vd~~al~~al~~g~i~~a~lDV~~~ep~~~~~~l~~~~n~~~tPH~a~~t~~--~~~~~~~~~~~~~~~~g~~~~~  206 (221)
                      |- -||.++    +++.+|.                       |.-+|.....|.-  ..+...+...+.-+...+++..
T Consensus       123 G~D~VDl~a----a~e~gI~-----------------------V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~  175 (186)
T d2naca2         123 GSDHVDLQS----AIDRNVT-----------------------VAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRD  175 (186)
T ss_dssp             CCTTBCHHH----HHHTTCE-----------------------EEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCG
T ss_pred             CCccccHHH----HHhCCCE-----------------------EEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            64 355543    3444554                       3334544444433  2222223333333344455555


Q ss_pred             ccccccCCccC
Q 027577          207 QNYIVKAGELA  217 (221)
Q Consensus       207 ~n~v~~~~~~~  217 (221)
                      ...+.+.+.||
T Consensus       176 ~~~~v~~G~~A  186 (186)
T d2naca2         176 EYLIVQGGALA  186 (186)
T ss_dssp             GGEEEETTEEC
T ss_pred             hhhhhhccccC
Confidence            56667777665

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.15  E-value=0.95  Score=34.37  Aligned_cols=29  Identities=28%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             EEc-cCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           41 TVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        41 IIG-~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      |-| .+.||+++|+.|...|++|++.+++.
T Consensus         6 VTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           6 ITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             ETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            445 46799999999999999999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.10  E-value=0.73  Score=33.84  Aligned_cols=88  Identities=14%  Similarity=0.106  Sum_probs=48.0

Q ss_pred             CCCEEEEEccCHHHHHHHHHHccCCCeEEEEcCCCCChhHHHh----cC--ce-ecCCHHhhc---CCCCEEEEeCCCC-
Q 027577           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AK-FEEDLDTML---PKCDIVVVNTPLT-  103 (221)
Q Consensus        35 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~-~~~~l~ell---~~aDvVv~~~p~~-  103 (221)
                      .+.+|.=||+|. |. ++..+...|.+|+++|.++...+.+++    .+  +. ...+..++-   ...|+|++.--.. 
T Consensus        37 ~~~~ILDiGcG~-G~-~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          37 KRGKVLDLACGV-GG-FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             SCCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCc-ch-hhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            356899999987 22 334555678999999997544433322    22  11 122333322   3468877653211 


Q ss_pred             --hhhhhcchHHHHhcCCCCCEE
Q 027577          104 --EKTRGMFDKDRIAKMKKGVLI  124 (221)
Q Consensus       104 --~~t~~~i~~~~~~~mk~ga~l  124 (221)
                        +....-+-++....||||..+
T Consensus       115 ~~~~d~~~~l~~i~~~LkpgG~l  137 (226)
T d1ve3a1         115 FEPLELNQVFKEVRRVLKPSGKF  137 (226)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CChhHHHHHHHHHHHHcCcCcEE
Confidence              111111234567778888654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.05  E-value=0.84  Score=34.88  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             CEEEEEccCHHHHHHHHHHccCCCeEEEEcCCC
Q 027577           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (221)
Q Consensus        37 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~   69 (221)
                      -.+.|||.|..|...|..+..+|.+|.+++..+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            358999999999999999999999999998644

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.02  E-value=0.49  Score=36.45  Aligned_cols=36  Identities=17%  Similarity=-0.020  Sum_probs=29.3

Q ss_pred             EEEEEcc-CHHHHHHHHHHccCCCeEEEEcCCCCChh
Q 027577           38 TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ   73 (221)
Q Consensus        38 ~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~   73 (221)
                      |..|-|. +.||+++|+.|...|++|++.+++....+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~   38 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD   38 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            5667775 45999999999999999999998765444