Citrus Sinensis ID: 027585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEcccEEEEEEEccccEEEEccccEEEEEEcccccEEEEEEEcccccccEEcccccccccccccHHHHHHHccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccEEcccccccHHHccHHHHHHHHcccccccccccEEEEEEcccccHHHcccccEEEEEEEccccEEEEEEcccccEEEEEEEcEEEEccHHHcccEEEEEEEcccEEEEcccccEEEEEcccccEEEEEEEcccccccEEHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MILSTISHFQLLCCLVLLlilplplysadpdplqdFCVADLKasaslngfpcklaaevtsgdfffdglskegnttifgsavtpanvlafpgvntlgismnrvdfapgglnpphshprasesgiviKGKLLVGFFTTNNVFYSKVLSagemfviprglihfqqnvGEGKALAFTAFnshlpgavivpttlfastpsvpnqvltktfqVDDDLISTIKSKFGS
Flexible Loop (DISEMBL)
MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLtktfqvdddLISTIKSKFGS
Low Complexity Region (SEG)
MILSTISHFQllcclvlllilplplYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS
Disordered region (IsUnstruct)
**LSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFA****************GIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLIS********
Disordered Region (DISOPRED)
************CCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF**
Disordered Region (DISEMBL)
MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS
Disordered Region (DISPRO)
****TISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q9LMC9	220	Germin-like protein subfa	yes	no	0.918	0.922	0.621	1e-70
P92995	220	Germin-like protein subfa	no	no	0.936	0.940	0.595	2e-67
Q6I544	221	Germin-like protein 5-1 O	yes	no	0.886	0.886	0.552	1e-57
Q9FZ27	219	Germin-like protein subfa	no	no	0.972	0.981	0.502	4e-57
Q10BU2	233	Germin-like protein 3-7 O	no	no	0.968	0.918	0.520	9e-57
P45851	224	Oxalate oxidase 2 OS=Hord	N/A	no	0.954	0.941	0.537	6e-56
Q7XZY1	222	Putative germin-like prot	no	no	0.923	0.918	0.519	2e-55
P15290	224	Oxalate oxidase GF-2.8 OS	N/A	no	0.954	0.941	0.532	4e-55
P94014	219	Germin-like protein subfa	no	no	0.873	0.881	0.551	2e-54
Q9SPV5	229	Nectarin-1 OS=Nicotiana p	N/A	no	0.950	0.917	0.504	2e-54

>sp|Q9LMC9|GLT2_ARATH Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 164/206 (79%), Gaps = 3/206 (1%)

Query: 15  LVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT 74
           L+++ +  +P  S+D DPLQDFCV DLKAS S+NGFPCK  + V++ DFFF GL    NT
Sbjct: 15  LLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNT 72

Query: 75  -TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF 133
            T  G AV+PANVL FPG+NTLG+SMN V+FAPGG+NPPHSHPRA+E+G+VI+G + VGF
Sbjct: 73  STPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGF 132

Query: 134 FTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAST 193
            TTNN  +SKVL+AGEMFV+PRGL+HFQ NVG+ KA   T+FNS LPG+ ++P+TLF S 
Sbjct: 133 LTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSN 192

Query: 194 PSVPNQVLTKTFQVDDDLISTIKSKF 219
           P++PN VLTKTF+ DD  ++ +KSKF
Sbjct: 193 PTIPNAVLTKTFRTDDVTVNKLKSKF 218

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.
Arabidopsis thaliana (taxid: 3702)

>sp|P92995|GLT1_ARATH Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 158/215 (73%), Gaps = 8/215 (3%)

Query: 6   ISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFF 65
           +  F L+ CL ++     P  S+D DPLQDFCV DLKASAS+NGFPCK A  V++ DFF+
Sbjct: 11  LRSFLLMFCLFVI-----PSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFY 63

Query: 66  DGLSKEGNTTI-FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIV 124
            GL    +T+   G  V PANVL FPG+NTLGISMN V+ APGG+NPPH HPRA+E G V
Sbjct: 64  SGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTV 123

Query: 125 IKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVI 184
           I+G + VGF +TNN  +SKVL+AGE FVIPRGL+HFQ NVG+ KA   TAFNS LPGAV+
Sbjct: 124 IEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVV 183

Query: 185 VPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
           +P+TLF S P +PN VLT+ F+ DD  +  +KSKF
Sbjct: 184 LPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKF 218

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6I544|GL52_ORYSJ Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 140/199 (70%), Gaps = 3/199 (1%)

Query: 22  PLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSA 80
           P P  + DPD LQD CVADL ++  +NGF CK  A VT  DF+F GL+  GNT   +GS 
Sbjct: 20  PTPSTAGDPDLLQDICVADLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSV 77

Query: 81  VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF 140
           VT ANV   PG+NTLG+SM+R+D+APGGLNPPH+HPRA+E   V++G L VGF TT N  
Sbjct: 78  VTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKL 137

Query: 141 YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQV 200
           Y+K +SAG++FV PRGL+HFQ+N G+  A   +AFNS LPG   +  TLFA++P VP+ V
Sbjct: 138 YTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGV 197

Query: 201 LTKTFQVDDDLISTIKSKF 219
           LTK FQV    +  IKS+ 
Sbjct: 198 LTKAFQVGTKEVEKIKSRL 216

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FZ27|GL22_ARATH Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1

 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 146/223 (65%), Gaps = 8/223 (3%)

Query: 1   MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTS 60
           M+ S IS    L C+++  I      + DPD LQD CVAD      LNGFPCK    +T 
Sbjct: 1   MMNSRISIIIALSCIMITSI-----RAYDPDALQDLCVADKSHGTKLNGFPCKETLNITE 55

Query: 61  GDFFFDGLSKEG--NTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRA 118
            DFFF G+SK    N+T+ GSAVT ANV   PG+NTL +S+ R+D+APGGLNPPH+HPRA
Sbjct: 56  SDFFFAGISKPAVINSTM-GSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRA 114

Query: 119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSH 178
           +E   V++G+L VGF TT N  ++K +  GE+FV PRGL+HFQ+N G+  A   +AFNS 
Sbjct: 115 TEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQ 174

Query: 179 LPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS 221
           LPG   V  TLFA+ P++P  VLTKTFQV   ++  IK +  +
Sbjct: 175 LPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKERLAT 217

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10BU2|GL37_ORYSJ Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1

 Score =  219 bits (559), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 114/219 (52%), Positives = 147/219 (67%), Gaps = 5/219 (2%)

Query: 6   ISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVA----DLKASASLNGFPCKLAAEVTSG 61
           +S   LL   V +L +     +ADP+P+QDFCVA      +AS +  GFPCK A+ V S 
Sbjct: 13  MSAAPLLVLTVAVLAVLASTCAADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSD 72

Query: 62  DFFFDGLSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASE 120
           DFFF GL+  G+T   FG+++ P NV AFP +NTLG+++NRVD APGG+NP HSHPRA+E
Sbjct: 73  DFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAE 132

Query: 121 SGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLP 180
              VI G++LVGF +T   +YSKV+  GE F IPRGL+HFQ N G   A A T FNS LP
Sbjct: 133 LVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLP 192

Query: 181 GAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
           G V   T LF + P +P+ VL K+FQVD ++I  +KSKF
Sbjct: 193 GVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P45851|OXO2_HORVU Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 116/216 (53%), Positives = 145/216 (67%), Gaps = 5/216 (2%)

Query: 11  LLCCLVLLLILPLPLYSADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLS 69
           L   L  +L+L   + ++DPDPLQDFCVADL   A S+NG PCK  +E      F   L+
Sbjct: 7   LAVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLA 66

Query: 70  KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           K GNT T  GSAVT  +V  +PG NTLG+SMNRVDFAPGG NPPH HPRA+E GIV+KG+
Sbjct: 67  KAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGE 126

Query: 129 LLVGFF---TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV 185
           LLVG      + N  YS+V+ AGE F+IPRGL+HFQ NVG+ +A    +FNS  PG V V
Sbjct: 127 LLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFV 186

Query: 186 PTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS 221
           P TLF S P +P  VLTK  +V+  ++  +KSKF +
Sbjct: 187 PLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAA 222

Releases hydrogen peroxide in the apoplast. May play an important role in several aspects of plant growth and defense mechanisms.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

>sp|Q7XZY1|GL32_ORYSJ Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 138/208 (66%), Gaps = 4/208 (1%)

Query: 16  VLLLILPLPLYSADPDPLQDFCVAD---LKASASLNGFPCKLAAEVTSGDFFFDGLSKEG 72
           V+ L L     + DPD LQD CVAD   L+    LNG PCK    VT+ DFFFDGL+  G
Sbjct: 11  VVFLALAATSLAGDPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAG 70

Query: 73  NTT-IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLV 131
           NTT   GS VT A+V   PG+NT+G+SM R+D+AP GL+PPH+HPRA+E   V +G L V
Sbjct: 71  NTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDV 130

Query: 132 GFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFA 191
           GF TT N  +++ +S GE+FV PRGL+HFQ+N G   ALA  AFNS LPG   +  TLF 
Sbjct: 131 GFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFG 190

Query: 192 STPSVPNQVLTKTFQVDDDLISTIKSKF 219
           + P +P+  L + FQVD  ++ +IKSKF
Sbjct: 191 AAPPLPSDTLARAFQVDGGMVESIKSKF 218

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P15290|GER2_WHEAT Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 5/216 (2%)

Query: 11  LLCCLVLLLILPLPLYSADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLS 69
           L+  L  +L+L   + + DPDPLQDFCVADL   A S+NG  CK  +E      F   L+
Sbjct: 7   LVAGLFAMLLLAPAVLATDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLA 66

Query: 70  KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           K GNT T  GSAVT  +V  +PG NTLG+SMNRVDFAPGG NPPH HPRA+E GIV+KG+
Sbjct: 67  KAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGE 126

Query: 129 LLVGFF---TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV 185
           LLVG      + N  YS+V+ AGE F+IPRGL+HFQ NVG+ +A    +FNS  PG V V
Sbjct: 127 LLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFV 186

Query: 186 PTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS 221
           P TLF S P +P  VLTK  +V+  ++  +KSKF +
Sbjct: 187 PLTLFGSNPPIPTPVLTKALRVEARVVELLKSKFAA 222

Produces developmental and stress-related release of hydrogen peroxide in the apoplast. May play an important role in several aspects of plant growth and defense mechanisms.

Triticum aestivum (taxid: 4565)

EC: 1

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

>sp|P94014|GL21_ARATH Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=2

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 134/194 (69%), Gaps = 1/194 (0%)

Query: 27  SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSAVTPAN 85
           SADPD LQD CVADL +   +NGFPCK AA VTS DFF  GL+K G T   FG+ VT AN
Sbjct: 22  SADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGAN 81

Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
           V+  PG+NTLG+S++R+D+APGGLNPPH+HPRA+E   V++G L VGF TT N   S+ L
Sbjct: 82  VMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSL 141

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
             G++F  P+GL+HFQ+N G+  A    AFNS LPG   +  TLF STP VP+ +L + F
Sbjct: 142 KKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNILAQAF 201

Query: 206 QVDDDLISTIKSKF 219
           Q     +  IKSKF
Sbjct: 202 QTSPGTVKHIKSKF 215

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPV5|NEC1_NICPL Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 146/216 (67%), Gaps = 6/216 (2%)

Query: 9   FQLLCCLVLLLI---LPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFF 65
           FQ++   +L L    +    ++AD D LQD CVADL +   +NGFPCK     T+ DF  
Sbjct: 11  FQIMEMTILFLFAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCK--TNFTAADFSS 68

Query: 66  DGLSKEGNTT-IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIV 124
             +SK G T   FGS VT ANV   PG+NTLG+S+ R+D+APGG+NPPH+HPRASE   V
Sbjct: 69  FAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFV 128

Query: 125 IKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVI 184
           ++G+L VGF TT NV  SK ++ GE+FV PRGL+HFQ+N G+  A   +AFNS LPG   
Sbjct: 129 MEGELDVGFITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQS 188

Query: 185 VPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG 220
           +P TLF ++P+VP+ VL +TFQ++ + +  IKSKF 
Sbjct: 189 IPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKFA 224

May interact with bacterial adhesins thereby protecting the reproductive tissues from microbial attack. Has no oxalate oxidase activity.

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
255540843	220	Rhicadhesin receptor precursor, putative	0.972	0.977	0.754	1e-90
224135689	217	predicted protein [Populus trichocarpa]	0.891	0.907	0.772	5e-83
147821092	522	hypothetical protein VITISV_027597 [Viti	0.882	0.373	0.714	1e-76
225456602	225	PREDICTED: germin-like protein subfamily	0.882	0.866	0.714	3e-76
449440734	221	PREDICTED: germin-like protein subfamily	0.995	0.995	0.665	2e-74
449441043	213	PREDICTED: germin-like protein subfamily	0.950	0.985	0.616	1e-71
15221902	220	germin-like protein subfamily T member 2	0.918	0.922	0.621	6e-69
297850288	220	hypothetical protein ARALYDRAFT_472121 [	0.945	0.95	0.599	5e-68
25044823	222	germin-like protein [Ananas comosus]	0.877	0.873	0.637	3e-66
186478636	220	germin-like protein subfamily T member 1	0.936	0.940	0.595	1e-65

>gi|255540843|ref|XP_002511486.1| Rhicadhesin receptor precursor, putative [Ricinus communis] gi|223550601|gb|EEF52088.1| Rhicadhesin receptor precursor, putative [Ricinus communis]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 163/216 (75%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 7   SHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFD 66
           S F LLC  ++LL+LP+ + SADPDPLQDFCVADLK S S+NGFPCK AAE+TS DFFFD
Sbjct: 5   SLFHLLCSSIVLLLLPMYINSADPDPLQDFCVADLKGSISVNGFPCKPAAEITSDDFFFD 64

Query: 67  GLSKEGNTT-IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVI 125
           GLSKEGNTT +FG + T ANVL+FPG+NTLGISMNRVDF+PGGLNPPHSHPRA+E+G+VI
Sbjct: 65  GLSKEGNTTNMFGWSATTANVLSFPGLNTLGISMNRVDFSPGGLNPPHSHPRATETGVVI 124

Query: 126 KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV 185
           +GKLLVGF TT+NVF+SKVLS G+MFV+PRGL+HFQ NVG+GKAL FTAFNSHLPG+ +V
Sbjct: 125 EGKLLVGFVTTSNVFHSKVLSPGQMFVVPRGLVHFQLNVGQGKALLFTAFNSHLPGSAVV 184

Query: 186 PTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFGS 221
              LF STP +PNQVLTK FQV DD+I+TIKSKFGS
Sbjct: 185 SANLFTSTPKIPNQVLTKAFQVGDDIINTIKSKFGS 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135689|ref|XP_002322136.1| predicted protein [Populus trichocarpa] gi|222869132|gb|EEF06263.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/198 (77%), Positives = 176/198 (88%), Gaps = 1/198 (0%)

Query: 25  LYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSAVTP 83
           + SADPD LQDFCVADLKA  S+NGFPCK  A+VTS DFFFDGLSKEGNTT IFG +VT 
Sbjct: 20  INSADPDLLQDFCVADLKAPLSVNGFPCKPEAKVTSDDFFFDGLSKEGNTTNIFGWSVTA 79

Query: 84  ANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSK 143
           ANVLAFPG+N+LGISMNRVDFAPGGLNPPHSHPRA+E+G++I+GKLLVGF TT+NVF+SK
Sbjct: 80  ANVLAFPGLNSLGISMNRVDFAPGGLNPPHSHPRATETGVIIEGKLLVGFVTTSNVFHSK 139

Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
           VL+ G+MFV+PRGL+HFQ NVGEGKAL FTAFNSHLPG+ +VPTTLFAS PS+P+ VLTK
Sbjct: 140 VLTVGQMFVVPRGLVHFQLNVGEGKALLFTAFNSHLPGSAVVPTTLFASRPSIPDDVLTK 199

Query: 204 TFQVDDDLISTIKSKFGS 221
            FQV +D+I  IKSKF S
Sbjct: 200 AFQVGNDVIDNIKSKFSS 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821092|emb|CAN75382.1| hypothetical protein VITISV_027597 [Vitis vinifera]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 163/196 (83%), Gaps = 1/196 (0%)

Query: 27  SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
           SAD DPLQDFC ADL A+  +NGFPCK A+ VTS DFFFDGLSKEG+T  IFGS+VT  N
Sbjct: 327 SADSDPLQDFCXADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTRGN 386

Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
           VL+FPGVNTLGISMNRVD APGG+N PH HPR+SESG+VI+G++LVGF TT NVFYSK L
Sbjct: 387 VLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSKNL 446

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
           + G+MFVIP GL+HFQQN+GE KAL FTAFNS  PG+V+    LF STPS+PN VLTK F
Sbjct: 447 TVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTKAF 506

Query: 206 QVDDDLISTIKSKFGS 221
           QVD ++++ IKSKFGS
Sbjct: 507 QVDANVVNGIKSKFGS 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456602|ref|XP_002267507.1| PREDICTED: germin-like protein subfamily T member 2-like [Vitis vinifera]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 164/196 (83%), Gaps = 1/196 (0%)

Query: 27  SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
           SAD DPLQDFC+ADL A+  +NGFPCK A+ VTS DFFFDGLSKEG+T  IFGS+VT  N
Sbjct: 30  SADSDPLQDFCIADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTRGN 89

Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
           VL+FPGVNTLGISMNRVD APGG+N PH HPR+SESG+VI+G++LVGF TT NVFYSK L
Sbjct: 90  VLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSKNL 149

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
           + G+MFVIP GL+HFQQN+GE KAL FTAFNS  PG+V+    LF STPS+PN VLTK F
Sbjct: 150 TVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTKAF 209

Query: 206 QVDDDLISTIKSKFGS 221
           QVD ++++ IKSKFGS
Sbjct: 210 QVDANVVNGIKSKFGS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440734|ref|XP_004138139.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus] gi|449477347|ref|XP_004154997.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 175/221 (79%), Gaps = 1/221 (0%)

Query: 1   MILSTISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTS 60
           MI    S   +L C ++LL+LP P  SADPDPLQDFCVADL A+ SLNGFPCK A+EVT+
Sbjct: 1   MIALRSSLLNMLVCFIILLLLPYPSLSADPDPLQDFCVADLNATVSLNGFPCKPASEVTA 60

Query: 61  GDFFFDGLSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRAS 119
            DFFFDGLSKEGNT   FG  VT  NVL FPG+NTLG+SMNRVD A GG+N PHSHPRA+
Sbjct: 61  DDFFFDGLSKEGNTDNPFGFGVTQGNVLTFPGLNTLGLSMNRVDLARGGINAPHSHPRAT 120

Query: 120 ESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL 179
           ES +VIKGK+LVGF +T++V+Y KVL+ G+MFV+PRGL+HFQ NVG GKA   TAFNS L
Sbjct: 121 ESIVVIKGKVLVGFVSTSSVYYYKVLTVGQMFVVPRGLVHFQYNVGHGKATLITAFNSQL 180

Query: 180 PGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG 220
           PGAV+V  TLFAS P +P ++LTK FQVD  +I++IKSKF 
Sbjct: 181 PGAVVVSRTLFASNPPLPVEILTKAFQVDASVINSIKSKFA 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441043|ref|XP_004138293.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus] gi|449477612|ref|XP_004155071.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/211 (61%), Positives = 159/211 (75%), Gaps = 1/211 (0%)

Query: 10  QLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLS 69
            LL   + L++LP P  S DPDPLQDFCVADL A+ S+ GFPCK  +EVT  DFF+DGLS
Sbjct: 1   MLLVSFIFLILLPHPSSSTDPDPLQDFCVADLNATVSVTGFPCKPISEVTVDDFFYDGLS 60

Query: 70  KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           KEGNT   FG  +TP NV A PG+NTLG+SMNR+D APGG+NPPH HPRASE  IV+KG+
Sbjct: 61  KEGNTKNPFGFGLTPGNVHALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKGR 120

Query: 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTT 188
           +LVGF T +NV+Y KVL  GE+F+IPR L+HFQ NVG  KA+    FNS LPG V+V   
Sbjct: 121 VLVGFLTVDNVYYHKVLKVGELFIIPRALVHFQYNVGRKKAVVLAGFNSQLPGGVLVAGN 180

Query: 189 LFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
           LFAS P +PN++L+K  QV+DD++ TIKS F
Sbjct: 181 LFASNPPIPNKILSKALQVNDDVVKTIKSDF 211

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221902|ref|NP_173332.1| germin-like protein subfamily T member 2 [Arabidopsis thaliana] gi|18203242|sp|Q9LMC9.1|GLT2_ARATH RecName: Full=Germin-like protein subfamily T member 2; Flags: Precursor gi|8778294|gb|AAF79303.1|AC068602_26 F14D16.13 [Arabidopsis thaliana] gi|21537092|gb|AAM61433.1| germin, putative [Arabidopsis thaliana] gi|89111904|gb|ABD60724.1| At1g18980 [Arabidopsis thaliana] gi|332191665|gb|AEE29786.1| germin-like protein subfamily T member 2 [Arabidopsis thaliana]

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 164/206 (79%), Gaps = 3/206 (1%)

Query: 15  LVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT 74
           L+++ +  +P  S+D DPLQDFCV DLKAS S+NGFPCK  + V++ DFFF GL    NT
Sbjct: 15  LLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNT 72

Query: 75  -TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF 133
            T  G AV+PANVL FPG+NTLG+SMN V+FAPGG+NPPHSHPRA+E+G+VI+G + VGF
Sbjct: 73  STPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGF 132

Query: 134 FTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAST 193
            TTNN  +SKVL+AGEMFV+PRGL+HFQ NVG+ KA   T+FNS LPG+ ++P+TLF S 
Sbjct: 133 LTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSN 192

Query: 194 PSVPNQVLTKTFQVDDDLISTIKSKF 219
           P++PN VLTKTF+ DD  ++ +KSKF
Sbjct: 193 PTIPNAVLTKTFRTDDVTVNKLKSKF 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850288|ref|XP_002893025.1| hypothetical protein ARALYDRAFT_472121 [Arabidopsis lyrata subsp. lyrata] gi|297338867|gb|EFH69284.1| hypothetical protein ARALYDRAFT_472121 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/217 (59%), Positives = 163/217 (75%), Gaps = 8/217 (3%)

Query: 4   STISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDF 63
           S   +F L  CL       +P  S+D DPLQDFCV DLKAS S+NGFPCK  + V++ DF
Sbjct: 9   SLFRYFFLTLCL-----FAIPSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDF 61

Query: 64  FFDGLSKEGNTT-IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESG 122
           FF GL    NT+   G +V PANVL FPG+NTLG+SMN V+FAPGG+NPPHSHPRA+E+G
Sbjct: 62  FFSGLGGPLNTSNANGVSVAPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAG 121

Query: 123 IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA 182
           IVI+G + VGF TTNN  +SKV+ AGEMFV+PRGL+HFQ NVG+ KA   T+FNS LPG+
Sbjct: 122 IVIEGSVFVGFLTTNNTLFSKVIQAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGS 181

Query: 183 VIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
            ++P+TLF S P++PN VLTKTF+ DD  ++ +KSKF
Sbjct: 182 AVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKF 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25044823|gb|AAM28275.1| germin-like protein [Ananas comosus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 155/196 (79%), Gaps = 2/196 (1%)

Query: 28  ADPDPLQDFCVADLKAS-ASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSAVTPAN 85
           ADPDPLQDFCVA+L+A+  +++GFPCK  + V S DFFF GLS  GNT  +FGS +T AN
Sbjct: 27  ADPDPLQDFCVANLQATDITVDGFPCKPTSSVVSDDFFFSGLSAPGNTNNMFGSNITQAN 86

Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
           V  FPG+NTLG+SMNRVD  PGG+NP HSHPRA+E G +++G++LVGF +T N FYSK +
Sbjct: 87  VANFPGLNTLGLSMNRVDLVPGGINPLHSHPRATELGFILQGEVLVGFVSTANAFYSKTV 146

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
            AGE FVIPRGL+HFQ NVG G A+  TAF+S LPG V+ P TLF STP++PN VLTKTF
Sbjct: 147 KAGESFVIPRGLVHFQFNVGTGNAVVITAFDSQLPGVVLAPFTLFGSTPAIPNDVLTKTF 206

Query: 206 QVDDDLISTIKSKFGS 221
           QVD  +I+ +KSKFG+
Sbjct: 207 QVDQSVINLLKSKFGN 222

Source: Ananas comosus

Species: Ananas comosus

Genus: Ananas

Family: Bromeliaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478636|ref|NP_564067.2| germin-like protein subfamily T member 1 [Arabidopsis thaliana] gi|18202452|sp|P92995.2|GLT1_ARATH RecName: Full=Germin-like protein subfamily T member 1; Flags: Precursor gi|8778295|gb|AAF79304.1|AC068602_27 F14D16.12 [Arabidopsis thaliana] gi|332191664|gb|AEE29785.1| germin-like protein subfamily T member 1 [Arabidopsis thaliana]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 158/215 (73%), Gaps = 8/215 (3%)

Query: 6   ISHFQLLCCLVLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFF 65
           +  F L+ CL ++     P  S+D DPLQDFCV DLKASAS+NGFPCK A  V++ DFF+
Sbjct: 11  LRSFLLMFCLFVI-----PSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFY 63

Query: 66  DGLSKEGNTTI-FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIV 124
            GL    +T+   G  V PANVL FPG+NTLGISMN V+ APGG+NPPH HPRA+E G V
Sbjct: 64  SGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTV 123

Query: 125 IKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVI 184
           I+G + VGF +TNN  +SKVL+AGE FVIPRGL+HFQ NVG+ KA   TAFNS LPGAV+
Sbjct: 124 IEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVV 183

Query: 185 VPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
           +P+TLF S P +PN VLT+ F+ DD  +  +KSKF
Sbjct: 184 LPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKF 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2011306	220	AT1G18980 [Arabidopsis thalian	0.864	0.868	0.649	8.2e-67
TAIR|locus:2011291	220	GLP4 "germin-like protein 4" [	0.864	0.868	0.634	3.3e-63
TAIR|locus:2012260	219	GLP5 "germin-like protein 5" [	0.873	0.881	0.551	8.9e-54
TAIR|locus:2827077	219	GL22 "germin-like protein subf	0.868	0.876	0.538	3e-53
TAIR|locus:2079582	220	GLP10 "germin-like protein 10"	0.859	0.863	0.530	1.3e-50
TAIR|locus:2027232	227	AT1G74820 [Arabidopsis thalian	0.846	0.823	0.526	4.1e-49
TAIR|locus:2074489	219	GLP8 "germin-like protein 8" [	0.868	0.876	0.505	2e-47
TAIR|locus:2074514	229	AT3G05950 [Arabidopsis thalian	0.873	0.842	0.484	1.5e-44
TAIR|locus:2102955	227	AT3G04200 [Arabidopsis thalian	0.868	0.845	0.497	1.9e-44
TAIR|locus:2177167	222	AT5G39130 [Arabidopsis thalian	0.868	0.864	0.462	5.7e-43

TAIR|locus:2011306 AT1G18980 [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 126/194 (64%), Positives = 157/194 (80%)

Query:    27 SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
             S+D DPLQDFCV DLKAS S+NGFPCK  + V++ DFFF GL    NT T  G AV+PAN
Sbjct:    27 SSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNGVAVSPAN 84

Query:    86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
             VL FPG+NTLG+SMN V+FAPGG+NPPHSHPRA+E+G+VI+G + VGF TTNN  +SKVL
Sbjct:    85 VLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVL 144

Query:   146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
             +AGEMFV+PRGL+HFQ NVG+ KA   T+FNS LPG+ ++P+TLF S P++PN VLTKTF
Sbjct:   145 NAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTF 204

Query:   206 QVDDDLISTIKSKF 219
             + DD  ++ +KSKF
Sbjct:   205 RTDDVTVNKLKSKF 218

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2011291 GLP4 "germin-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 123/194 (63%), Positives = 149/194 (76%)

Query:    27 SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTI-FGSAVTPAN 85
             S+D DPLQDFCV DLKASAS+NGFPCK A  V++ DFF+ GL    +T+   G  V PAN
Sbjct:    27 SSDSDPLQDFCVGDLKASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPAN 84

Query:    86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
             VL FPG+NTLGISMN V+ APGG+NPPH HPRA+E G VI+G + VGF +TNN  +SKVL
Sbjct:    85 VLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVL 144

Query:   146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
             +AGE FVIPRGL+HFQ NVG+ KA   TAFNS LPGAV++P+TLF S P +PN VLT+ F
Sbjct:   145 NAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAF 204

Query:   206 QVDDDLISTIKSKF 219
             + DD  +  +KSKF
Sbjct:   205 RTDDTTVQNLKSKF 218

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2012260 GLP5 "germin-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 107/194 (55%), Positives = 134/194 (69%)

Query:    27 SADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSAVTPAN 85
             SADPD LQD CVADL +   +NGFPCK AA VTS DFF  GL+K G T   FG+ VT AN
Sbjct:    22 SADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGAN 81

Query:    86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
             V+  PG+NTLG+S++R+D+APGGLNPPH+HPRA+E   V++G L VGF TT N   S+ L
Sbjct:    82 VMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSL 141

Query:   146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
               G++F  P+GL+HFQ+N G+  A    AFNS LPG   +  TLF STP VP+ +L + F
Sbjct:   142 KKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNILAQAF 201

Query:   206 QVDDDLISTIKSKF 219
             Q     +  IKSKF
Sbjct:   202 QTSPGTVKHIKSKF 215

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2827077 GL22 "germin-like protein subfamily 2 member 2 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 105/195 (53%), Positives = 134/195 (68%)

Query:    29 DPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEG--NTTIFGSAVTPANV 86
             DPD LQD CVAD      LNGFPCK    +T  DFFF G+SK    N+T+ GSAVT ANV
Sbjct:    24 DPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTM-GSAVTGANV 82

Query:    87 LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLS 146
                PG+NTL +S+ R+D+APGGLNPPH+HPRA+E   V++G+L VGF TT N  ++K + 
Sbjct:    83 EKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIK 142

Query:   147 AGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQ 206
              GE+FV PRGL+HFQ+N G+  A   +AFNS LPG   V  TLFA+ P++P  VLTKTFQ
Sbjct:   143 IGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQ 202

Query:   207 VDDDLISTIKSKFGS 221
             V   ++  IK +  +
Sbjct:   203 VGSKMVDKIKERLAT 217

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2079582 GLP10 "germin-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 103/194 (53%), Positives = 134/194 (69%)

Query:    29 DPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEG--NTTIFGSAVTPANV 86
             DPD LQD CVAD  +   +NGF CK  + +T+ DFFF G+ K    N T+ GSAVT ANV
Sbjct:    23 DPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTV-GSAVTGANV 81

Query:    87 LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLS 146
                 G+NTLG+S+ R+D+APGGLNPPH+HPRA+E   V++G+L VGF TT N  ++K + 
Sbjct:    82 EKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVK 141

Query:   147 AGEMFVIPRGLIHFQQNVGEGK-ALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
              GE+FV PRGLIH+Q+N  + K A   +AFNS LPG   +  TLF +TP++P+ VLT TF
Sbjct:   142 KGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTF 201

Query:   206 QVDDDLISTIKSKF 219
             Q+    I  IKSKF
Sbjct:   202 QIGTKEIEKIKSKF 215

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2027232 AT1G74820 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 100/190 (52%), Positives = 132/190 (69%)

Query:    31 DPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTI-FGSAVTPANVLAF 89
             +P QDFCVADL+A+ + +G+PCK  ++VTS DFF+ GL+   NT+   G A  PAN+L F
Sbjct:    38 NPFQDFCVADLQATPTNSGYPCK--SQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTF 95

Query:    90 PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE 149
             PG+NTLGISM  V  APGG N PHSHP  +E+G+VI+G +LVGF TTN   YSKV+  G+
Sbjct:    96 PGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGD 155

Query:   150 MFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDD 209
             MFVIP GLIH++ NVG+ +    T     LP  V VP TL A+ P++PN+VL   F+ D 
Sbjct:   156 MFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADS 215

Query:   210 DLISTIKSKF 219
               I+ ++SKF
Sbjct:   216 KTINMLRSKF 225

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2074489 GLP8 "germin-like protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 98/194 (50%), Positives = 128/194 (65%)

Query:    28 ADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT--TIFGSAVTPAN 85
             AD + LQDFCVADL     +NG+PCK  A+VT  DF+F GL+    T  +  GSAVT AN
Sbjct:    22 ADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGAN 81

Query:    86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
             V   PG+NTLG+S++R+D+APGGLNPPH HPRASE+  V++G+L VGF TT     SK +
Sbjct:    82 VEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHV 141

Query:   146 SAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTF 205
             + G++FV P+ L+HFQQN  +  A    AF+S LPG  +V  +LF S P +P+ +L K F
Sbjct:   142 NKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAF 201

Query:   206 QVDDDLISTIKSKF 219
                   I  IK KF
Sbjct:   202 GAAAPEIQKIKGKF 215

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2074514 AT3G05950 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 96/198 (48%), Positives = 129/198 (65%)

Query:    29 DPDPLQDFCVA-DLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPANV 86
             DP PLQDFCVA D  +   +NG  CK    V + DFF  GL+  GNT    GS VT  NV
Sbjct:    26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNV 85

Query:    87 LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSK 143
                PG+NTLG+S+ R+DFAPGG NPPH+HPRA+E  +V++G LLVGF T+N   N  +SK
Sbjct:    86 DKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSK 145

Query:   144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
             VL  G++FV P G+IHFQ NVG   A+AF    S  PG + +   +F S PS+  ++L K
Sbjct:   146 VLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAK 205

Query:   204 TFQVDDDLISTIKSKFGS 221
              FQ+D +++  ++++F S
Sbjct:   206 AFQLDVNVVKYLEARFSS 223

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2102955 AT3G04200 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 98/197 (49%), Positives = 127/197 (64%)

Query:    29 DPDPLQDFCVADLKAS-ASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTIF-GSAVTPANV 86
             DP+PLQDFCVA  + +   +NG  CK    VT+ DF + GL+   NTT F GS VT  +V
Sbjct:    27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDV 86

Query:    87 LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSK 143
                PG+NTLG+S+ R+DFA GG NPPH HPRA+E  +V KGKLLVGF ++N   N  + K
Sbjct:    87 NKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYK 146

Query:   144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
             VL  G++FV P GLIHFQ NV   +A+AF  F S  PG + +   +F S PS+P +VL K
Sbjct:   147 VLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAK 206

Query:   204 TFQVDDDLISTIKSKFG 220
              FQ+D  L+  +   FG
Sbjct:   207 AFQLDVKLVRFLHIVFG 223

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2177167 AT5G39130 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 92/199 (46%), Positives = 130/199 (65%)

Query:    29 DPDPLQDFCVA--DLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTTI-FGSAVTPAN 85
             DP PLQDFCVA  DLK    +NG  CK    V + DFFF GL+  GNT    GS VT  N
Sbjct:    24 DPSPLQDFCVAIDDLKG-VFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVN 82

Query:    86 VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYS 142
             V   PG+NT+GIS+ R+D+AP G NPPH+HPR SE  ++++G L VGF ++N   N  ++
Sbjct:    83 VDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFA 142

Query:   143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
             KVL  G++FV P G+IHFQ N+G+  A+AF   +S   G + +  T+F S P +  ++L 
Sbjct:   143 KVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLA 202

Query:   203 KTFQVDDDLISTIKSKFGS 221
             + FQ+D +++  +++KFGS
Sbjct:   203 RAFQLDANVVKELQAKFGS 221

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S8P4	RHRE_PEA	No assigned EC number	0.5434	0.8280	0.8433	N/A	no
Q94EG3	NEC1_NICLS	1, ., 1, 5, ., 1, ., 1	0.5190	0.9276	0.8951	N/A	no
Q9LMC9	GLT2_ARATH	No assigned EC number	0.6213	0.9185	0.9227	yes	no
Q9SPV5	NEC1_NICPL	1, ., 1, 5, ., 1, ., 1	0.5046	0.9502	0.9170	N/A	no
P45850	OXO1_HORVU	1, ., 2, ., 3, ., 4	0.5634	0.8687	0.9552	N/A	no
P45851	OXO2_HORVU	1, ., 2, ., 3, ., 4	0.5370	0.9547	0.9419	N/A	no
P15290	GER2_WHEAT	1, ., 2, ., 3, ., 4	0.5324	0.9547	0.9419	N/A	no
Q6I544	GL52_ORYSJ	No assigned EC number	0.5527	0.8868	0.8868	yes	no
P26759	GER3_WHEAT	1, ., 2, ., 3, ., 4	0.5410	0.9140	0.9017	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
smart00835	146	smart00835, Cupin_1, Cupin	4e-35
pfam00190	139	pfam00190, Cupin_1, Cupin	2e-30
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	1e-10
pfam07883	70	pfam07883, Cupin_2, Cupin domain	4e-08
TIGR04366	132	TIGR04366, cupin_WbuC, cupin fold metalloprotein,	7e-05
TIGR03404	367	TIGR03404, bicupin_oxalic, bicupin, oxalate decarb	1e-04
COG2140	209	COG2140, COG2140, Thermophilic glucose-6-phosphate	2e-04
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	3e-04

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  121 bits (305), Expect = 4e-35
 Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 74  TTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF 133
            +  G  +  A+   FP +N LGIS  RV+  PGG+ PPH HPRA+E   V++G+  VG 
Sbjct: 7   FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV 66

Query: 134 FTTN-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAS 192
              N N  Y   L  G++FV+P+G  HFQ N G+   L F AFN++ P          + 
Sbjct: 67  VDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDE-NLEFVAFNTNDPNRRFFLAGRNSV 125

Query: 193 TPSVPNQVLTKTFQVDDDLI 212
              +P +VL   F V  + +
Sbjct: 126 LRGLPPEVLAAAFGVSAEEV 145

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score =  109 bits (274), Expect = 2e-30
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 16/134 (11%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDF-APGGLNPPHSHPRASESGIVIKGKLLVGFFTT 136
           G  +  AN    PG+  L  S  R D   PGGL  PH HP A+E   V++G+  VGF   
Sbjct: 14  GGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVLQGRGRVGFVVP 73

Query: 137 NNVF--YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTP 194
              F  + + L  G++FV+P G  H+Q N G+   L   AF+++ P   +          
Sbjct: 74  GCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDP-GLELVAFDTNNPANQL---------- 122

Query: 195 SVPNQVLTKTFQVD 208
             P +VL + F + 
Sbjct: 123 --PREVLARAFFLA 134

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 87  LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLS 146
              P      +S+  V F PG + P H+HP   ++  V++G+   G          K L 
Sbjct: 33  RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGE---GTVQLEGE--KKELK 87

Query: 147 AGEMFVIPRGLIHFQQNVGEGKA 169
           AG++ +IP G++H  + V +   
Sbjct: 88  AGDVIIIPPGVVHGLKAVEDEPM 110

Length = 131

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHF 160
            V   PG  +PPH HP   E   V++G+  +   T +      VL AG+    P G+ H 
Sbjct: 2   LVTLPPGESSPPHRHPG-EEFFYVLEGEGEL---TVDGEEV--VLKAGDSVYFPAGVPHR 55

Query: 161 QQNVGEGKALAFTAF 175
            +N G+  A     +
Sbjct: 56  FRNTGDEPARLLDVY 70

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|213979 TIGR04366, cupin_WbuC, cupin fold metalloprotein, WbuC family

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 111 PPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSAG-EMFV--IPRGLIH 159
            PH HP  SE+ IV++G+L V  F  +  V    VLSAG   F   IP G  H
Sbjct: 48  RPHRHPHKSETFIVLEGELDVLLFDDDGEVTERVVLSAGGGTFGVEIPPGTWH 100

Members of this family show sequence similarity to cupin fold proteins (see pfam07883), including conserved His residues likely to serve as metal-binding ligands. Many members occur in bacterial O-antigen biosynthesis regions. Some members have acquired the gene symbol wbuC (e.g. Jarvis, et al, 2011), but publications using this term do not ascribe a function. Length = 132

>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN 137
           G  V  A+   FP   T  I+   V   PG +   H HP A E    I+G+  +  F   
Sbjct: 228 GGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAG 285

Query: 138 NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVP 197
               +    AG++  +PR + H+ +N G+   +    F +     V +   L A TP   
Sbjct: 286 GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-ALTPP-- 342

Query: 198 NQVLTKTFQVDDDLISTIK 216
            Q++     +DD++I ++K
Sbjct: 343 -QLVAAHLNLDDEVIDSLK 360

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins. Length = 367

>gnl|CDD|225051 COG2140, COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 102 VDFAPGGLNPPHSHPRASESGI--VIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIH 159
           V   PG +   H HP A E  I  V+KG+  +             + AG++  +P G  H
Sbjct: 85  VFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGH 144

Query: 160 FQQNVGEG 167
           +  N G+ 
Sbjct: 145 YTINTGDE 152

Length = 209

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 86  VLAFPGVNTLGISMNRVDFA-----PGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF 140
                G  T+  + +R   A     PG     H H    E   V++G    G  T     
Sbjct: 20  EFRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEG---TGKVTIGGE- 75

Query: 141 YSKVLSAGEMFVIPRGLIHFQQNVGEGK 168
               + AG+   IP G  H  +N G+  
Sbjct: 76  -EVEVKAGDSVYIPAGTPHRVRNTGKIP 102

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.95
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.91
PLN00212	493	glutelin; Provisional	99.9
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.87
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.85
PLN00212	493	glutelin; Provisional	99.81
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.77
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.56
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.51
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.51
COG1917	131	Uncharacterized conserved protein, contains double	99.48
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.34
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.33
COG3837	161	Uncharacterized conserved protein, contains double	99.33
PRK11171	266	hypothetical protein; Provisional	99.32
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.31
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.3
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.23
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	99.22
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.18
PRK11171	266	hypothetical protein; Provisional	99.14
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.14
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.97
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.76
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.73
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.68
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.68
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.61
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.59
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.55
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.53
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.44
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.43
COG1791	181	Uncharacterized conserved protein, contains double	98.29
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.27
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.27
PRK13501	290	transcriptional activator RhaR; Provisional	98.25
PRK13500	312	transcriptional activator RhaR; Provisional	98.17
PRK13503	278	transcriptional activator RhaS; Provisional	98.17
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.15
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	98.14
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	98.13
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.1
COG4297	163	Uncharacterized protein containing double-stranded	98.09
PRK13502	282	transcriptional activator RhaR; Provisional	98.06
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.87
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.86
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.81
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.79
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.76
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.71
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.67
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.64
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	97.23
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.11
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.94
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	96.8
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	96.44
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	96.42
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.27
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.18
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.07
PF12852	186	Cupin_6: Cupin	95.98
COG3257	264	GlxB Uncharacterized protein, possibly involved in	95.89
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	95.75
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	95.69
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.66
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	95.45
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	95.31
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.3
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.29
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	95.2
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	95.07
PLN02658	435	homogentisate 1,2-dioxygenase	95.07
COG3822	225	ABC-type sugar transport system, auxiliary compone	95.06
TIGR02466	201	conserved hypothetical protein. This family consis	94.97
COG3806	216	ChrR Transcriptional activator [Transcription]	94.97
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	94.96
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	94.72
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	94.68
PRK12335	287	tellurite resistance protein TehB; Provisional	94.58
COG1741	276	Pirin-related protein [General function prediction	94.05
PRK15131	389	mannose-6-phosphate isomerase; Provisional	93.68
PRK10579	94	hypothetical protein; Provisional	93.63
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	93.63
PF14525	172	AraC_binding_2: AraC-binding-like domain	93.59
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	93.51
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	93.44
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	93.39
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	93.12
PLN02288	394	mannose-6-phosphate isomerase	92.81
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	92.68
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	92.45
KOG3706	629	consensus Uncharacterized conserved protein [Funct	91.61
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	90.94
COG5553	191	Predicted metal-dependent enzyme of the double-str	90.47
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	89.74
COG2850	383	Uncharacterized conserved protein [Function unknow	89.42
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	89.18
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	88.8
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	87.95
PRK09391	230	fixK transcriptional regulator FixK; Provisional	86.33
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	86.15
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	85.39
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	84.66
PHA02984	286	hypothetical protein; Provisional	82.44
PHA02890	278	hypothetical protein; Provisional	80.37
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	80.22

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.95  E-value=1e-26  Score=210.86  Aligned_cols=162  Identities=22%  Similarity=0.337  Sum_probs=144.1

Q ss_pred             cccCCCcccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEE
Q 027585           50 FPCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKL  129 (221)
Q Consensus        50 ~~ck~p~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~  129 (221)
                      .+-+.+....++.|+|+....+. ....||+++.+++.+||+++  ++++++++++||++.++|||++++|++||++|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~  277 (367)
T TIGR03404       201 EAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQA  277 (367)
T ss_pred             ccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEE
Confidence            34445566666779999655544 45677889999999999988  4899999999999999999999999999999999


Q ss_pred             EEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCH
Q 027585          130 LVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDD  209 (221)
Q Consensus       130 ~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~  209 (221)
                      ++++.+.+|+.+++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+..    +|++||+++|+++.
T Consensus       278 ~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~~~~  353 (367)
T TIGR03404       278 RMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLNLDD  353 (367)
T ss_pred             EEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhCcCH
Confidence            99998877777789999999999999999999999999999999999999999999999844    99999999999999


Q ss_pred             HHHHHHHhh
Q 027585          210 DLISTIKSK  218 (221)
Q Consensus       210 ~~v~~l~~~  218 (221)
                      +++++|++.
T Consensus       354 ~~~~~l~~~  362 (367)
T TIGR03404       354 EVIDSLKKE  362 (367)
T ss_pred             HHHHhcccc
Confidence            999999864

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.91  E-value=4e-23  Score=187.41  Aligned_cols=137  Identities=23%  Similarity=0.322  Sum_probs=122.3

Q ss_pred             cccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEE
Q 027585           74 TTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVI  153 (221)
Q Consensus        74 ~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~  153 (221)
                      +...|++++.++..+||++++  +++.++++.||+..++|||.. .|++||++|++++++.+++|+.+.+.|++||+++|
T Consensus        46 ~~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~-~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f  122 (367)
T TIGR03404        46 RLENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKE-AEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF  122 (367)
T ss_pred             ccccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCC-ceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence            345688999999999999985  799999999999999999965 89999999999999999888888889999999999


Q ss_pred             CCCCeEEEEecCCccEEEEEEEcCCC---CeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          154 PRGLIHFQQNVGEGKALAFTAFNSHL---PGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       154 P~g~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      |+|.+|+++|.+ +.++++.++++..   +..+.+++++ ++   +|++||+|+|++|++++++|++.
T Consensus       123 P~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~~~~~l~~~  185 (367)
T TIGR03404       123 PPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPESAFDNLPLK  185 (367)
T ss_pred             CCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHHHHHhcccc
Confidence            999999999984 5688888887764   5577787875 75   99999999999999999999864

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PLN00212 glutelin; Provisional

Probab=99.90  E-value=1.6e-22  Score=188.32  Aligned_cols=145  Identities=17%  Similarity=0.308  Sum_probs=128.3

Q ss_pred             CCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecCCc
Q 027585           72 GNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSAGE  149 (221)
Q Consensus        72 ~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GD  149 (221)
                      .++ ++.+++++.++..++|+|+++++++.+++|.||++.+||||++|.|++||++|++++++++.+ ++++..+|++||
T Consensus       322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd  401 (493)
T PLN00212        322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ  401 (493)
T ss_pred             cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence            345 889999999999999999999999999999999999999999999999999999999999877 588999999999


Q ss_pred             EEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585          150 MFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG  220 (221)
Q Consensus       150 v~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~~  220 (221)
                      +++||+|.+|.... +++...+++..++.++-...++  .++|++   ||.+||+++|+++.+++++||..+.
T Consensus       402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~  470 (493)
T PLN00212        402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG  470 (493)
T ss_pred             EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence            99999999998766 4666888887766664333333  678886   9999999999999999999998753

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.87  E-value=5.4e-22  Score=157.84  Aligned_cols=132  Identities=31%  Similarity=0.509  Sum_probs=109.8

Q ss_pred             cCCCCc-ccCCeeEEEeeccccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-----eEE
Q 027585           69 SKEGNT-TIFGSAVTPANVLAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-----VFY  141 (221)
Q Consensus        69 ~~~~~~-~~~g~~v~~~~~~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~  141 (221)
                      ..+.+. ...+|.++.++..++|.+.+.. +.+.+..++||++..|||| ++.|+.||++|++++++..+++     +..
T Consensus         4 ~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~   82 (144)
T PF00190_consen    4 REPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDF   82 (144)
T ss_dssp             CSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred             CCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceee
Confidence            345555 7789999999999999655544 5566677799999999999 8999999999999999998765     355


Q ss_pred             EEE--ecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHH
Q 027585          142 SKV--LSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLIS  213 (221)
Q Consensus       142 ~~~--L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~  213 (221)
                      ..+  +++||++++|+|.+||+.|.++++...+.++...+|...            +|+|+++++|+++.++++
T Consensus        83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~  144 (144)
T PF00190_consen   83 SQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ  144 (144)
T ss_dssp             EEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred             eceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence            666  999999999999999999999888888888877777543            899999999999998863

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>smart00835 Cupin_1 Cupin

Probab=99.85  E-value=9.6e-20  Score=145.20  Aligned_cols=134  Identities=36%  Similarity=0.620  Sum_probs=116.1

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecCCcEEEE
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSAGEMFVI  153 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GDv~~~  153 (221)
                      +..||.++.++...+|.+++.++.+.+++++||+..++|+|++..|++||++|++++.+.++. ++...+.+++||++++
T Consensus         8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i   87 (146)
T smart00835        8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV   87 (146)
T ss_pred             cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence            567888999999999999999999999999999999999998779999999999999998763 4566899999999999


Q ss_pred             CCCCeEEEEecCCccEEEEEEEcCCCCeee---eccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 027585          154 PRGLIHFQQNVGEGKALAFTAFNSHLPGAV---IVPTTLFASTPSVPNQVLTKTFQVDDDLI  212 (221)
Q Consensus       154 P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~---~~~~~lf~~~p~~~~~vla~~f~l~~~~v  212 (221)
                      |+|..|++.|.+++++++++ +.+++|...   .-..++|..   +++++++++|+++++++
T Consensus        88 p~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       88 PQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             CCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence            99999999999999999995 555665532   222466775   99999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PLN00212 glutelin; Provisional

Probab=99.81  E-value=2.1e-18  Score=160.91  Aligned_cols=138  Identities=14%  Similarity=0.256  Sum_probs=115.0

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-----eE---------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-----VF---------  140 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~---------  140 (221)
                      ...||.+..++ ..-+.+...|+++.|++++|++...||+| ++.+++||++|++.+++..++-     +.         
T Consensus        59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~  136 (493)
T PLN00212         59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ  136 (493)
T ss_pred             cccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence            56777777777 55789999999999999999999999999 5799999999999999996420     10         


Q ss_pred             -----------EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe--------eeecc---------------
Q 027585          141 -----------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG--------AVIVP---------------  186 (221)
Q Consensus       141 -----------~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~---------------  186 (221)
                                 ..+.|++||++.+|+|+.||++|.|+++++++++++..++.        .+.++               
T Consensus       137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~  216 (493)
T PLN00212        137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIE  216 (493)
T ss_pred             ccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCcccccccccccc
Confidence                       12699999999999999999999999999988888655432        33333               


Q ss_pred             ----chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          187 ----TTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       187 ----~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                          .++|+.   +++++|++||+++.++++||+.
T Consensus       217 ~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~  248 (493)
T PLN00212        217 QHSGQNIFSG---FSTELLSEALGINAQVAKRLQS  248 (493)
T ss_pred             ccccCchhhc---CCHHHHHHHHCCCHHHHHHHhc
Confidence                238885   9999999999999999999974

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.77  E-value=4.8e-18  Score=141.62  Aligned_cols=150  Identities=20%  Similarity=0.279  Sum_probs=131.0

Q ss_pred             ccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcE--EEEEEeCEEEEEEEec
Q 027585           59 TSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASE--SGIVIKGKLLVGFFTT  136 (221)
Q Consensus        59 ~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~E--i~yVl~G~~~v~~~~~  136 (221)
                      ..+||+|..+....  ...|+.+....+..+|+-.     -..+.+.||++...||||+++|  +.||++|++++.+.++
T Consensus        49 ~~~~~~yel~~~~~--~~~~g~L~~~~t~~~pGs~-----g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~  121 (209)
T COG2140          49 KEDDFVYELLESEP--GERGGDLRLDVTRIFPGSA-----GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP  121 (209)
T ss_pred             CCCceEEEeecccc--cccCCeEEEEeeccCCCcc-----ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence            67889998654421  2238899999999999863     4678899999999999999999  9999999999999999


Q ss_pred             CCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          137 NNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       137 ~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +|+..+..+++||++++|++..|+..|+|++|++++.++....+..+....++++    ++..+++..++.+.+..+.++
T Consensus       122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p~  197 (209)
T COG2140         122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVPR  197 (209)
T ss_pred             CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCcc
Confidence            9999999999999999999999999999999999999999999999999888866    788899999988887777665


Q ss_pred             hhh
Q 027585          217 SKF  219 (221)
Q Consensus       217 ~~~  219 (221)
                      .++
T Consensus       198 ~~~  200 (209)
T COG2140         198 IKF  200 (209)
T ss_pred             ccc
Confidence            544

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.56  E-value=7.9e-15  Score=101.86  Aligned_cols=70  Identities=30%  Similarity=0.458  Sum_probs=65.4

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +++++||+..++|+|+...|++||++|++++.++++     .+.+++||.+++|++..|.+.|.+++++++++++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            578999999999999985599999999999997776     9999999999999999999999999999999875

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2.2e-13  Score=106.39  Aligned_cols=83  Identities=23%  Similarity=0.225  Sum_probs=76.3

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ...++.++.+.||+...+|.|.+.+|++||++|++.+.++++     ...|++||++++|+|..|+..|.|..++.++.+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            357899999999999999888888999999999999999987     999999999999999999999999999999999


Q ss_pred             EcCCCCee
Q 027585          175 FNSHLPGA  182 (221)
Q Consensus       175 ~~s~~pg~  182 (221)
                      ......+.
T Consensus       109 ~~p~~~~e  116 (127)
T COG0662         109 QSPPYLGE  116 (127)
T ss_pred             ecCCcCCC
Confidence            87766554

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.51  E-value=2.5e-13  Score=106.04  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=72.1

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEE-EE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVG-FF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~-~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .++++.+++++||+..+.|+|+. .|++||++|++++. ++ ++     ++.|++||++++|++.+|++.|.  ++++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l  104 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLV  104 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEE
Confidence            35789999999999999999977 79999999999999 64 76     99999999999999999999997  899999


Q ss_pred             EEEcCCCCee
Q 027585          173 TAFNSHLPGA  182 (221)
Q Consensus       173 ~~~~s~~pg~  182 (221)
                      ++++.+.+|.
T Consensus       105 ~v~tP~~~~~  114 (125)
T PRK13290        105 CVFNPPLTGR  114 (125)
T ss_pred             EEECCCCCCc
Confidence            9998766654

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.48  E-value=4.1e-13  Score=104.82  Aligned_cols=84  Identities=27%  Similarity=0.450  Sum_probs=73.0

Q ss_pred             cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585           89 FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus        89 fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~  168 (221)
                      .+...+..+.+.++.++||+..++|+||...+.+||++|+++++++++     .+.+++||++++|+|..|++.|.++.+
T Consensus        35 ~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~  109 (131)
T COG1917          35 LPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEP  109 (131)
T ss_pred             ccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCc
Confidence            333344457899999999999999999944899999999999999977     999999999999999999999999887


Q ss_pred             EEEEEEEcC
Q 027585          169 ALAFTAFNS  177 (221)
Q Consensus       169 a~~l~~~~s  177 (221)
                      ...++++..
T Consensus       110 ~~~l~v~~~  118 (131)
T COG1917         110 MVLLLVFPL  118 (131)
T ss_pred             eeEEEEeee
Confidence            677777655

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.34  E-value=2.3e-11  Score=101.43  Aligned_cols=87  Identities=17%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             CcccceEEEEEEEcCCCc------CCCCCCCCC--cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585           92 VNTLGISMNRVDFAPGGL------NPPHSHPRA--SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus        92 l~~~gis~~~v~l~Pgg~------~~~H~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      ....++.+....+.||..      .+.|+|+..  .|+.||++|++.+.+.+.+|......+++||+++||+|..|...|
T Consensus        63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN  142 (191)
T PRK04190         63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVN  142 (191)
T ss_pred             CcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEE
Confidence            445568899999999996      567999754  599999999999999887766668999999999999999999999


Q ss_pred             cCCccEEEEEEEcCC
Q 027585          164 VGEGKALAFTAFNSH  178 (221)
Q Consensus       164 ~g~~~a~~l~~~~s~  178 (221)
                      .|++++++++++...
T Consensus       143 ~G~epl~fl~v~p~~  157 (191)
T PRK04190        143 TGDEPLVFLACYPAD  157 (191)
T ss_pred             CCCCCEEEEEEEcCC
Confidence            999999999988654

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.33  E-value=1.7e-11  Score=101.33  Aligned_cols=76  Identities=22%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.+....++||+.. +.|+|++ .|++||++|++++.++++     .+.|++||+++||++.+|.+.|.++++++++++
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~  179 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA  179 (185)
T ss_pred             eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence            466777889999864 4677776 999999999999999887     999999999999999999999999999999998


Q ss_pred             EcC
Q 027585          175 FNS  177 (221)
Q Consensus       175 ~~s  177 (221)
                      ...
T Consensus       180 ~~p  182 (185)
T PRK09943        180 HTP  182 (185)
T ss_pred             eCC
Confidence            753

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.33  E-value=1.1e-11  Score=99.00  Aligned_cols=92  Identities=17%  Similarity=0.142  Sum_probs=77.8

Q ss_pred             ccCCCcccceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC--CeEEEEec
Q 027585           88 AFPGVNTLGISMNRVDFAPGGL-NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG--LIHFQQNV  164 (221)
Q Consensus        88 ~fP~l~~~gis~~~v~l~Pgg~-~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~~N~  164 (221)
                      .+-||..  +.+....++||+. ...|||...+|++|||+|++++.+++.     ++.|++||++-||+|  ..|.++|.
T Consensus        35 ~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~  107 (161)
T COG3837          35 DALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINR  107 (161)
T ss_pred             hhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeec
Confidence            3446664  4456677899985 688999988999999999999999988     999999999999999  99999999


Q ss_pred             CCccEEEEEEEcCCCCeeeecc
Q 027585          165 GEGKALAFTAFNSHLPGAVIVP  186 (221)
Q Consensus       165 g~~~a~~l~~~~s~~pg~~~~~  186 (221)
                      ++..+++|++-+...-....++
T Consensus       108 s~~~~~yL~vG~r~~~d~i~YP  129 (161)
T COG3837         108 SDVILRYLEVGTREPDDIITYP  129 (161)
T ss_pred             CCceEEEEEeccccccceeecC
Confidence            9999999999876655555554

>PRK11171 hypothetical protein; Provisional

Probab=99.32  E-value=6.3e-11  Score=103.54  Aligned_cols=77  Identities=21%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCC-CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHP-RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      ..++.+.+++++||+....|.|+ +.+|++||++|++++.++++     ++.|++||+++||++..|.+.|.++++++++
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l  132 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFH  132 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            34689999999999987777765 56899999999999999887     9999999999999999999999999999999


Q ss_pred             EEE
Q 027585          173 TAF  175 (221)
Q Consensus       173 ~~~  175 (221)
                      ++.
T Consensus       133 ~v~  135 (266)
T PRK11171        133 WIR  135 (266)
T ss_pred             EEE
Confidence            986

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.31  E-value=1.8e-11  Score=114.77  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=73.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.+++++||+..+.|+|++..|.+||++|++++.++++     ++.|++||+++||+|.+|.+.|.|+++++++++.
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~  449 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ  449 (468)
T ss_pred             CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            57889999999999899998878999999999999999988     9999999999999999999999999999999998


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      +.+
T Consensus       450 ~~~  452 (468)
T TIGR01479       450 SGS  452 (468)
T ss_pred             cCC
Confidence            754

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.30  E-value=2.2e-11  Score=114.25  Aligned_cols=78  Identities=22%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.+++++||+....|+|...+|.+||++|++++.++++     ++.|++||+++||+|.+|+++|.|+++++++++.
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~  458 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVR  458 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            57889999999998888888777899999999999999998     9999999999999999999999999999999998


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      ...
T Consensus       459 ~g~  461 (478)
T PRK15460        459 SGS  461 (478)
T ss_pred             cCC
Confidence            654

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.23  E-value=1e-10  Score=94.11  Aligned_cols=78  Identities=24%  Similarity=0.298  Sum_probs=73.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +....++.+.||....+|.|....|.++|++|++.+.+++.     .+.+++||++++|+|..|++.|.|+.+++++.+-
T Consensus        62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq  136 (151)
T PF01050_consen   62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ  136 (151)
T ss_pred             CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence            56789999999999999999888999999999999999888     9999999999999999999999999999999987


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      ...
T Consensus       137 ~G~  139 (151)
T PF01050_consen  137 TGE  139 (151)
T ss_pred             cCC
Confidence            654

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=9e-11  Score=89.71  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=75.5

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+..++++||+....|.|.+.+-.+||++|+...++++.  -.+..+..+||.++||+|++|.-.|.+++++..+.+.
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR  122 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR  122 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence            57889999999999999999987888999999999999764  3457789999999999999999999999999999988


Q ss_pred             cCCCCe
Q 027585          176 NSHLPG  181 (221)
Q Consensus       176 ~s~~pg  181 (221)
                      +..++.
T Consensus       123 sDp~~~  128 (142)
T COG4101         123 SDPNPQ  128 (142)
T ss_pred             cCCCCC
Confidence            877764

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.18  E-value=2.6e-10  Score=99.34  Aligned_cols=75  Identities=21%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.+..++++||+.. .+|+|++.+|++||++|++++.++++     ++.|++||.+++|++..|.+.|.++++++++++
T Consensus        57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v  131 (260)
T TIGR03214        57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY  131 (260)
T ss_pred             cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            578999999998754 45667777899999999999999887     899999999999999999999999999999987


Q ss_pred             E
Q 027585          175 F  175 (221)
Q Consensus       175 ~  175 (221)
                      .
T Consensus       132 ~  132 (260)
T TIGR03214       132 K  132 (260)
T ss_pred             E
Confidence            6

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.14  E-value=3.6e-10  Score=98.77  Aligned_cols=76  Identities=17%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.+++++||+..+.|-|...+|.+||++|++++.++++     .+.|++||+++|+++.+|++.|.|+++++++..-
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k  257 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK  257 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence            36899999999999888534445999999999999999888     9999999999999999999999999999998765


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      +
T Consensus       258 ~  258 (266)
T PRK11171        258 D  258 (266)
T ss_pred             c
Confidence            4

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.14  E-value=3.8e-10  Score=98.35  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.+++++||+..+.|.|...+|.+||++|++.+..+++     .+.+++||++++|++.+|+++|.|+++.++|.--
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk  252 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK  252 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence            46788899999999997544444899999999999999887     9999999999999999999999999999988643

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.97  E-value=7.6e-09  Score=82.12  Aligned_cols=93  Identities=18%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC----CeEEEEEecCCcEEEECCCCeEEEEecC-CccEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN----NVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKAL  170 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~  170 (221)
                      .+.+..-++.||...|.|.|.. +|+++|++|+++..+....    |+..++.+-+++.+.||.+..|...|++ .+++.
T Consensus        43 evEVwlQTfAPG~~TPiHRHsC-EEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq  121 (167)
T PF02041_consen   43 EVEVWLQTFAPGSATPIHRHSC-EEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ  121 (167)
T ss_dssp             SEEEEEEEE-TT-B--EEEESS--EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred             eeeEEeeeecCCCCCCCccccc-cEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence            3688999999999999999986 9999999999999998653    6777899999999999999999999999 58999


Q ss_pred             EEEEEcCCCCeeeeccchh
Q 027585          171 AFTAFNSHLPGAVIVPTTL  189 (221)
Q Consensus       171 ~l~~~~s~~pg~~~~~~~l  189 (221)
                      ++++++...-..+.+.+|.
T Consensus       122 vlViiSrpPvkvf~y~dw~  140 (167)
T PF02041_consen  122 VLVIISRPPVKVFIYDDWS  140 (167)
T ss_dssp             EEEEEESSS--EEEESSTT
T ss_pred             EEEEecCCCeEEEEecccc
Confidence            9999987766777777764

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.76  E-value=5.8e-08  Score=79.66  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=57.8

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ..+.-.||....+|+|+. +|++|+++|++++.+.+ +|+.....|++||++++|+|++|.....  +..+.+.+
T Consensus        37 VmvvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi  107 (177)
T PRK13264         37 VMVVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI  107 (177)
T ss_pred             EEEEccCCcccccccCCC-ceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence            334447888899999986 99999999999999987 3544589999999999999999999763  44555554

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.73  E-value=1e-07  Score=77.11  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=54.4

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .||....+|.|+. +|++|+++|++.+.+.+. |+.....|++||++++|+|++|.....++  ++.+.+
T Consensus        36 Gpn~R~d~H~~~t-dE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~--t~~LvI  101 (159)
T TIGR03037        36 GPNARTDFHDDPG-EEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG--SIGLVI  101 (159)
T ss_pred             CCCCCcccccCCC-ceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC--cEEEEE
Confidence            6777788999985 999999999999998874 55558999999999999999999987533  444444

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.68  E-value=6.2e-08  Score=73.57  Aligned_cols=66  Identities=24%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             CCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585          106 PGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS  177 (221)
Q Consensus       106 Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s  177 (221)
                      ++...++|+|+. -|+.||++|++++.++++     .+.+++||++++|+|.+|.+...++++...+.+.-+
T Consensus        12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~   77 (136)
T PF02311_consen   12 PNFEFPPHWHDF-YEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS   77 (136)
T ss_dssp             TT-SEEEETT-S-EEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred             CCCccCCEECCC-EEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence            455668899997 999999999999999888     999999999999999999999988777777776543

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.68  E-value=2.8e-07  Score=76.24  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=58.8

Q ss_pred             cccceEEEEEEEcCCCc------CCCCCCCC------CcEEEEEEeCEEEEEEEecCC----eEEEEEecCCcEEEECCC
Q 027585           93 NTLGISMNRVDFAPGGL------NPPHSHPR------ASESGIVIKGKLLVGFFTTNN----VFYSKVLSAGEMFVIPRG  156 (221)
Q Consensus        93 ~~~gis~~~v~l~Pgg~------~~~H~Hp~------a~Ei~yVl~G~~~v~~~~~~~----~~~~~~L~~GDv~~~P~g  156 (221)
                      ...++......+.||.+      ..-|+|+.      ..|+.+|++|++.+-+.+.++    +.+...+++||+++||++
T Consensus        46 ~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~  125 (182)
T PF06560_consen   46 QKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPG  125 (182)
T ss_dssp             ----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT
T ss_pred             eeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCC
Confidence            34457777778888865      35599987      899999999999999998887    777899999999999999


Q ss_pred             CeEEEEecCCccEEEEEEEcCC
Q 027585          157 LIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       157 ~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      ..|...|+|++++++.....+.
T Consensus       126 yaH~tIN~g~~~L~~~~~~~~~  147 (182)
T PF06560_consen  126 YAHRTINTGDEPLVFAAWVPRD  147 (182)
T ss_dssp             -EEEEEE-SSS-EEEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEEEEecC
Confidence            9999999999999998887643

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.61  E-value=5e-07  Score=76.89  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .|+...+.++. ...+  ||.+..|+.||++|++++.++++     ++.+++||+++||+|..|.+...+  .++++.+.
T Consensus       156 ~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~  225 (233)
T PRK15457        156 SMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA  225 (233)
T ss_pred             ceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence            35555556654 3333  55556999999999999999887     999999999999999996665543  66776655


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      ..
T Consensus       226 ~P  227 (233)
T PRK15457        226 WP  227 (233)
T ss_pred             ec
Confidence            43

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.59  E-value=3.7e-07  Score=66.63  Aligned_cols=73  Identities=33%  Similarity=0.471  Sum_probs=56.7

Q ss_pred             ceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .++...++|+||+.-++ +.+.. .-++||++|.+++.+.+.     ++.+.+|+++++|+|-...+.|.++++++++.+
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~-~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDN-TMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SE-EEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCc-EEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            36788999999997544 55654 899999999999999988     999999999999999999999999999998754

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.55  E-value=2.6e-07  Score=78.46  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=64.0

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ..+..+.++||+..+.|.|.+ .|+.+|++|+..    ++     ...+.+||.+..|.|..|...+.++++++++++.+
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d  196 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD  196 (215)
T ss_pred             cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence            456788999999999999977 999999999953    55     45789999999999999999999999999999987


Q ss_pred             CCC
Q 027585          177 SHL  179 (221)
Q Consensus       177 s~~  179 (221)
                      .+-
T Consensus       197 apl  199 (215)
T TIGR02451       197 APL  199 (215)
T ss_pred             CCc
Confidence            553

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.53  E-value=3.9e-07  Score=80.76  Aligned_cols=60  Identities=13%  Similarity=0.077  Sum_probs=52.4

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      ...-.|..+.++|||.. -|+.|+++|++.+.++++     .+.+++||.+++++|.+|.....++
T Consensus        30 ~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~   89 (302)
T PRK10371         30 IEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGN   89 (302)
T ss_pred             EEeeCCCCCCCCCcccc-EEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCC
Confidence            33456677899999998 999999999999999887     9999999999999999998766544

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.44  E-value=1.9e-06  Score=69.85  Aligned_cols=66  Identities=18%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585          110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ...|.|.+ +|+-|+++|++.+.+...+++.....+++||.+++|+|+.||+.-..+...+++=.|.
T Consensus        85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   85 FEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             CS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             heeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            47899998 9999999999999999887777778999999999999999999876666677766665

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.43  E-value=3.8e-07  Score=66.90  Aligned_cols=66  Identities=26%  Similarity=0.461  Sum_probs=52.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      |..+..++++||+..|.|.|+. .|.+|||+|++..    .     ...+.+||.++.|+|..|....  ++.+.++.
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~-----~~~~~~G~~~~~p~g~~h~~~s--~~gc~~~v   88 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----G-----DGRYGAGDWLRLPPGSSHTPRS--DEGCLILV   88 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----T-----TCEEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----C-----CccCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence            4578889999999999999998 8888999999884    2     2356999999999999999984  55666654

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.29  E-value=6.9e-06  Score=66.74  Aligned_cols=73  Identities=18%  Similarity=0.312  Sum_probs=62.3

Q ss_pred             CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeec
Q 027585          111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIV  185 (221)
Q Consensus       111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~  185 (221)
                      .-|.|.+ .|+-|++.|.+.+.+...+|+.+...+.+||.+.+|+|+-||+.-..+...+++=.|+ ..+|++-.
T Consensus        89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~  161 (181)
T COG1791          89 QEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAI  161 (181)
T ss_pred             HHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceee
Confidence            5699987 9999999999999999999999999999999999999999999876666666666665 55666544

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.27  E-value=1.2e-05  Score=62.25  Aligned_cols=84  Identities=18%  Similarity=0.246  Sum_probs=73.6

Q ss_pred             cccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           93 NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        93 ~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .+.|+|+..-.+.+|.....|+-.. -|-+|+++|++++...+ +|+  .+.++||.++...+...|..+...  +++++
T Consensus        31 DgmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v  104 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV  104 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence            4678999999999999999998665 99999999999998764 355  899999999999999999999754  99999


Q ss_pred             EEEcCCCCee
Q 027585          173 TAFNSHLPGA  182 (221)
Q Consensus       173 ~~~~s~~pg~  182 (221)
                      |+|+.+--|.
T Consensus       105 CVFnPpltG~  114 (126)
T PF06339_consen  105 CVFNPPLTGR  114 (126)
T ss_pred             EEcCCCCcCc
Confidence            9999876554

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.27  E-value=6.8e-06  Score=71.33  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585          107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus       107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      +...++|||.. .|++||++|++++.+++.     .+.+.+||.+++|+|..|.....
T Consensus        33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQHDY-YEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCccccc-EEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence            34568999986 999999999999999887     89999999999999999976543

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.25  E-value=3.7e-06  Score=73.56  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      .+....++|||+. .|++||++|++++.+++.     .+.+++||++++|+|.+|.+...++
T Consensus        26 ~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         26 YPQETFVEHTHQF-CEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CCCCCCccccccc-eeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCC
Confidence            4445577999986 999999999999999887     9999999999999999999876543

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.17  E-value=8.5e-06  Score=72.39  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      -|....++|||+. .|++||++|++.+.+++.     .+.+++||++++|++..|.+....+
T Consensus        56 ~~~~~~~~H~H~~-~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         56 YPQDVFAEHTHDF-CELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCCccccce-EEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCC
Confidence            3444578999986 999999999999999988     9999999999999999999876544

>PRK13503 transcriptional activator RhaS; Provisional

Probab=98.17  E-value=5.1e-06  Score=71.79  Aligned_cols=55  Identities=24%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG  165 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g  165 (221)
                      .+....++|||+. .|++||++|++++.+++.     .+.+++||++++|++..|.+.+..
T Consensus        23 ~~~~~~~~H~H~~-~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         23 LPQAAFPEHHHDF-HEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             CccccccccccCc-eeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhcc
Confidence            3445678999987 999999999999999988     999999999999999999887653

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.15  E-value=1.8e-05  Score=66.78  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             eEEEEEEEcCCC-cCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           97 ISMNRVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        97 is~~~v~l~Pgg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++-..+++.|+| .-.+-.-++++-++||++|++++.+.++     ++.|++|+..++|+|..|.++|...+++++.++-
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r  135 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR  135 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence            345678898876 6677778888999999999999999988     9999999999999999999999999999998875


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      .
T Consensus       136 k  136 (264)
T COG3257         136 K  136 (264)
T ss_pred             e
Confidence            4

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=98.14  E-value=7.2e-06  Score=71.25  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585          107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus       107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      +...++|||.+.-|++|+++|++++.+++.     .+.+++||++++|+|..|.+...++....++
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i   93 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL   93 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence            456799999744899999999999999877     8999999999999999999876554443333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=98.13  E-value=1.1e-05  Score=63.33  Aligned_cols=93  Identities=17%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CeeEEEeecc-ccCCCcccceEEEEE-EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCc-EEEEC
Q 027585           78 GSAVTPANVL-AFPGVNTLGISMNRV-DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE-MFVIP  154 (221)
Q Consensus        78 g~~v~~~~~~-~fP~l~~~gis~~~v-~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GD-v~~~P  154 (221)
                      .|.++.+... ..|.--.   .+..+ ..++|....+|.|....|+++|++|++++.+.+..++ .++.|...+ .+.+|
T Consensus        15 RG~L~~~e~~~~ipf~i~---rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip   90 (131)
T PF05523_consen   15 RGSLSVIERFDDIPFEIK---RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP   90 (131)
T ss_dssp             TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred             CCcEEEEeccCCCCCCcc---EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence            4555555543 2443111   23333 3445555899999999999999999999998875443 577777765 99999


Q ss_pred             CCCeEEEEecCCccEEEEEEE
Q 027585          155 RGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +|..|.+.|.+++ +++++..
T Consensus        91 pg~w~~~~~~s~~-svlLv~a  110 (131)
T PF05523_consen   91 PGVWHGIKNFSED-SVLLVLA  110 (131)
T ss_dssp             TT-EEEEE---TT--EEEEEE
T ss_pred             CchhhHhhccCCC-cEEEEEc
Confidence            9999999999877 6666543

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.10  E-value=7.9e-06  Score=73.63  Aligned_cols=75  Identities=17%  Similarity=0.314  Sum_probs=63.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEE-EEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLL-VGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~-v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+....-.+.||...++|.|.. .-+.+|++|++. ..++++     +..+++||+++.|++..|...|.|++++..+.+
T Consensus        80 tl~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~g~-----~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~  153 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVDGE-----RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG  153 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEECCE-----EEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence            3455667789999999999986 899999999996 445555     899999999999999999999999999777666


Q ss_pred             Ec
Q 027585          175 FN  176 (221)
Q Consensus       175 ~~  176 (221)
                      .+
T Consensus       154 lD  155 (335)
T TIGR02272       154 LD  155 (335)
T ss_pred             CC
Confidence            54

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.09  E-value=6.8e-06  Score=64.62  Aligned_cols=66  Identities=21%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             CCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          107 GGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       107 gg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      |++. --|+|.++.|++.|++|+..+.+++.+|.  +..+.+||++++|+|+-|.- +....+..++..|
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY  118 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY  118 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence            4443 34799999999999999999999998887  78999999999999999975 3345566666655

>PRK13502 transcriptional activator RhaR; Provisional

Probab=98.06  E-value=1.9e-05  Score=68.64  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             EcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          104 FAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       104 l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      ..|+...++|||+. -|++||.+|++++.+++.     .+.+++||++++|++.+|.+...++
T Consensus        25 ~~~~~~~~~H~h~~-~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         25 RYPQDVFAEHTHEF-CELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCCCCCCCccccce-EEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCC
Confidence            34555578999985 999999999999999887     9999999999999999999875443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.87  E-value=3.2e-05  Score=68.20  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=85.6

Q ss_pred             cccCCeEEecc----cCCCCcccCCeeEEEeeccccCCCcccc-----eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE
Q 027585           58 VTSGDFFFDGL----SKEGNTTIFGSAVTPANVLAFPGVNTLG-----ISMNRVDFAPGGLNPPHSHPRASESGIVIKGK  128 (221)
Q Consensus        58 ~~~~df~~~~l----~~~~~~~~~g~~v~~~~~~~fP~l~~~g-----is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~  128 (221)
                      ..+.-+.|.-+    ...|...+....++.+-.-+-|+++++.     +....--+.||...|.|.|.. .-+-||++|+
T Consensus        44 ~vp~lW~~~~ir~ll~~sgeli~~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~  122 (351)
T COG3435          44 CVPALWKYEEIRPLLLRSGELISAREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGK  122 (351)
T ss_pred             cccccccHHHHHHHHHHhhhccCcccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEecc
Confidence            33444555543    2334442233445666666778888764     223444678999999999987 8999999999


Q ss_pred             EEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585          129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS  177 (221)
Q Consensus       129 ~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s  177 (221)
                      +-+++++.    ....+++||.++-|++..|..-|.|++|+.++-.++.
T Consensus       123 Ga~T~VdG----er~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi  167 (351)
T COG3435         123 GAYTVVDG----ERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI  167 (351)
T ss_pred             ceeEeecC----ceeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence            98877754    2789999999999999999999999999999887653

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.86  E-value=3.3e-05  Score=54.68  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      ++....+-.||.. ++++.  ..|++||++|++++...  +|.  ++++++||.+++|+|..-.+.-
T Consensus         7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v   66 (74)
T PF05899_consen    7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEV   66 (74)
T ss_dssp             EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEE
T ss_pred             EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEE
Confidence            4556666777652 33333  39999999999999874  333  7999999999999998766643

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.81  E-value=4.9e-05  Score=61.46  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585          110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus       110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~  168 (221)
                      ...|.|+. +|+-||++|++.+-+.+.+++....-+++||.+++|+|+-|++.-+.+.-
T Consensus        86 fEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~  143 (179)
T KOG2107|consen   86 FEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNY  143 (179)
T ss_pred             HHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHH
Confidence            47899998 99999999999999999988888899999999999999999997654443

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.79  E-value=0.00026  Score=56.58  Aligned_cols=79  Identities=19%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCC
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      +..+.-.|+...-.|.-+. +|++|-++|...+.+.+ +|+.....+++||++..|++++|.-.-..  ..+-+++-...
T Consensus        35 ~VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R  110 (151)
T PF06052_consen   35 IVMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKR  110 (151)
T ss_dssp             EEEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE--
T ss_pred             EEEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEecc
Confidence            3445667888888898886 99999999999999988 47778999999999999999999987754  33444444333


Q ss_pred             CCe
Q 027585          179 LPG  181 (221)
Q Consensus       179 ~pg  181 (221)
                      .++
T Consensus       111 ~~~  113 (151)
T PF06052_consen  111 PEG  113 (151)
T ss_dssp             -TT
T ss_pred             CCC
Confidence            333

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.76  E-value=8.7e-05  Score=59.74  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ++...++++..   +.-|.-..+|+.||++|++++..+++     ++..++||+++||+|.--.+...  ..++++.+..
T Consensus        77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~G~-----~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y  146 (152)
T PF06249_consen   77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISIDGQ-----TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY  146 (152)
T ss_dssp             SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred             eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEECCE-----EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence            44555555553   34566667999999999999997665     99999999999999998777543  3456555543

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.71  E-value=5.6e-05  Score=65.57  Aligned_cols=72  Identities=35%  Similarity=0.448  Sum_probs=46.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      |.+..++.+++|-..|||+|.. ++-+||++|++...  +.  +....-|.+|..++.|+|..|.....+++.+.++
T Consensus        35 g~~~~~vkf~~g~~~pph~H~~-~~~~~Vi~G~~~~~--~~--~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIHNA-DYRGTVISGELHNG--DP--KAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEESS--EEEEEEESEEEET--TE--E-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred             CcceEEEEcCCCccCCCcceee-eEEEEEEEeEEEcC--CC--cccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence            6788999999999999999986 99999999986653  32  3445679999999999999998876666555444

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00041  Score=55.55  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..+++++ ...+|-  -.-+|+-||+||++.+...++     +..-++||++++|+|.--.+.-+|.  ++++.+.
T Consensus        99 ~l~aG~m~~~~-~tf~wt--l~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge--a~flyvt  168 (176)
T COG4766          99 RLGAGLMEMKN-TTFPWT--LNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT  168 (176)
T ss_pred             ccccceeeecc-ccCcce--ecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence            35566666666 445544  345899999999999999888     8999999999999999887766554  6666554

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.64  E-value=0.00025  Score=63.98  Aligned_cols=87  Identities=16%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             CeeEEEeeccccCC-CcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC
Q 027585           78 GSAVTPANVLAFPG-VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG  156 (221)
Q Consensus        78 g~~v~~~~~~~fP~-l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g  156 (221)
                      |..+.-.+..+-+. ..+++..  ...+.+|....+|.|.. ..+++|++|+++..++++     ++..++||+|++|..
T Consensus       232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig~~-----~~~W~~gD~f~vPsW  303 (335)
T TIGR02272       232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIGDA-----VFRFSPKDVFVVPSW  303 (335)
T ss_pred             eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccccc-cEEEEEEeCeEEEEECCE-----EEEecCCCEEEECCC
Confidence            44455555444332 2333333  35678888999999976 999999999999999887     899999999999999


Q ss_pred             CeEEEEecCCccEEEEEE
Q 027585          157 LIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       157 ~~H~~~N~g~~~a~~l~~  174 (221)
                      ..|...|.  +++.++.+
T Consensus       304 ~~~~h~a~--~da~Lf~~  319 (335)
T TIGR02272       304 HPVRFEAS--DDAVLFSF  319 (335)
T ss_pred             CcEecccC--CCeEEEEe
Confidence            88887774  34554443

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=97.23  E-value=0.0093  Score=48.99  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe--------EEEEEecCCcEEEECCCCeEEEEecC-C
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV--------FYSKVLSAGEMFVIPRGLIHFQQNVG-E  166 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~--------~~~~~L~~GDv~~~P~g~~H~~~N~g-~  166 (221)
                      .+++..+.-.||...+.|=|.++.=++.|++|+++-..-...+.        .....+..|...+++.+.+|...|.+ +
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            36788889999999999999987788999999988775543211        12345788888899999999999986 8


Q ss_pred             ccEEEEEEEcCCCCe
Q 027585          167 GKALAFTAFNSHLPG  181 (221)
Q Consensus       167 ~~a~~l~~~~s~~pg  181 (221)
                      ++++-+=+|+.+-..
T Consensus       154 ~~avSLHvYspPl~~  168 (175)
T PF05995_consen  154 EPAVSLHVYSPPLEQ  168 (175)
T ss_dssp             S-EEEEEEEES--SE
T ss_pred             CCEEEEEEcCCChhh
Confidence            899888888866443

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.11  E-value=0.0015  Score=57.75  Aligned_cols=92  Identities=22%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP  154 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P  154 (221)
                      ...|..++-++..+=-... --|....-.+.||-...+|.|.+ +-+.-|.+|+++..++++     ++..++||+|++|
T Consensus       240 p~dG~~~ryvNP~TGg~~m-ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~-----rf~~~~~D~fvVP  312 (351)
T COG3435         240 PFDGYKMRYVNPVTGGYAM-PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE-----RFDWSAGDIFVVP  312 (351)
T ss_pred             CCCcceEEEecCCCCCCcC-chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEECCE-----EeeccCCCEEEcc
Confidence            3456666666653321111 01222233567888889999987 889999999999999988     9999999999999


Q ss_pred             CCCeEEEEecCCccEEEEEE
Q 027585          155 RGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .-..|...|. .+++.++++
T Consensus       313 sW~~~~~~~g-s~da~LFsf  331 (351)
T COG3435         313 SWAWHEHVNG-SEDAVLFSF  331 (351)
T ss_pred             CcceeecccC-CcceEEEec
Confidence            9999999985 777777664

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.94  E-value=0.0024  Score=49.18  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      ++....+-.||.   ++++-...|+.++|+|++++.-++  |+  ...+++||+++||+|..=.++-
T Consensus        45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~--Ge--~v~~~aGD~~~~~~G~~g~W~V  104 (116)
T COG3450          45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG--GE--PVEVRAGDSFVFPAGFKGTWEV  104 (116)
T ss_pred             eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC--Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence            445555555654   456655699999999999998654  44  8899999999999998776654

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=96.80  E-value=0.0089  Score=49.20  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=59.4

Q ss_pred             CCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC------CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEEE--
Q 027585          106 PGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN------NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFTA--  174 (221)
Q Consensus       106 Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~~--  174 (221)
                      ||-...+|+|..- .+++.|++|++.....+--      |+....++.+.  ..+++|+|..|-+.|.+++...++.+  
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~  133 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE  133 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence            8888999999876 8999999999998877631      46667778766  89999999999999999887444433  


Q ss_pred             -EcCCCC
Q 027585          175 -FNSHLP  180 (221)
Q Consensus       175 -~~s~~p  180 (221)
                       ++.+.|
T Consensus       134 ~Y~p~~~  140 (173)
T COG1898         134 EYDPEHE  140 (173)
T ss_pred             eeCcccc
Confidence             344445

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=96.44  E-value=0.018  Score=47.48  Aligned_cols=77  Identities=18%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             cCCCcCCCCCCC--CCcEEEEEEeCEEEEEEEecC------CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSHP--RASESGIVIKGKLLVGFFTTN------NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+|....+|.|.  .-..++.|++|++...+.|--      |+.....|.+  +..++||+|..|-+.+.+++ +.++-.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            567788999983  358999999999999888741      6777888887  55999999999999998866 444433


Q ss_pred             EcC-CCCee
Q 027585          175 FNS-HLPGA  182 (221)
Q Consensus       175 ~~s-~~pg~  182 (221)
                      .+. -+|+.
T Consensus       131 ~~~~y~p~~  139 (176)
T TIGR01221       131 CTDYYAPEY  139 (176)
T ss_pred             CCCCcCccc
Confidence            332 24543

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=96.42  E-value=0.035  Score=45.78  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             cCCCcCCCCCCCCC---cEEEEEEeCEEEEEEEec--C----CeEEEEEecCCc--EEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHPRA---SESGIVIKGKLLVGFFTT--N----NVFYSKVLSAGE--MFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a---~Ei~yVl~G~~~v~~~~~--~----~~~~~~~L~~GD--v~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|...   ..++.|++|++...+.|-  +    |+.....|.+++  .++||+|..|-+.+.+++...++-
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~  130 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK  130 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence            45778899998663   689999999999888863  2    688889998886  799999999999999777444443


Q ss_pred             EEcCCCCe
Q 027585          174 AFNSHLPG  181 (221)
Q Consensus       174 ~~~s~~pg  181 (221)
                      +-..-+|+
T Consensus       131 ~t~~y~p~  138 (176)
T PF00908_consen  131 VTNYYDPE  138 (176)
T ss_dssp             ESS---GG
T ss_pred             cCCccCcc
Confidence            32233344

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.27  E-value=0.046  Score=50.89  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          114 SHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       114 ~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.+++|++++-+|++++...-.     ...+++||.++||+|+.+++.-.  ++++.+.+
T Consensus       142 ~NaDGD~Li~~q~G~l~l~Te~G-----~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~  195 (424)
T PF04209_consen  142 RNADGDELIFPQQGSLRLETEFG-----RLDVRPGDYVVIPRGTRFRVELP--GPARGYII  195 (424)
T ss_dssp             EESSEEEEEEEEES-EEEEETTE-----EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred             EcCCCCEEEEEEECCEEEEecCe-----eEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence            45667999999999999986654     68899999999999999998776  55555544

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.18  E-value=0.02  Score=49.88  Aligned_cols=49  Identities=18%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +|-+.+ -++.++++|++.+..++.     .+.+++||.+++|+|.+|.+....+
T Consensus        44 ~~~~~~-~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         44 PLGMKG-YILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             CCCccc-eEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCC
Confidence            344443 789999999999988777     8999999999999999998766443

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.07  E-value=0.035  Score=46.69  Aligned_cols=69  Identities=25%  Similarity=0.429  Sum_probs=48.3

Q ss_pred             EEEEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecC--------C---------------------------eEEE
Q 027585           99 MNRVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTN--------N---------------------------VFYS  142 (221)
Q Consensus        99 ~~~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~--------~---------------------------~~~~  142 (221)
                      ...+.+.+ |...++|+.+. .-++.+++|+=++.+..+.        .                           +..+
T Consensus       132 ~~~l~ig~~gs~t~lH~D~~-~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  210 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDPS-HNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE  210 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-SS-EEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred             ccEEEEeCCCceeeeeECch-hhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence            44566666 55689999874 8899999999888776542        1                           2457


Q ss_pred             EEecCCcEEEECCCCeEEEEecCCcc
Q 027585          143 KVLSAGEMFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus       143 ~~L~~GDv~~~P~g~~H~~~N~g~~~  168 (221)
                      .+|++||+++||+|..|+++|..+++
T Consensus       211 ~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  211 VVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             EEECCCeEEEECCCCeEEEEEcCCCC
Confidence            89999999999999999999984333

...

>PF12852 Cupin_6: Cupin

Probab=95.98  E-value=0.041  Score=44.95  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC
Q 027585          119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG  165 (221)
Q Consensus       119 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g  165 (221)
                      .-+.+|++|+.++.+.+. +  ....|++||++++|+|..|.+....
T Consensus        36 ~~fh~V~~G~~~l~~~~~-~--~~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPGG-G--EPIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             eEEEEEECCeEEEEEcCC-C--CeEEecCCCEEEEcCCCCeEeCCCC
Confidence            678899999999998761 1  2799999999999999999995543

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=95.89  E-value=0.036  Score=47.20  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=60.6

Q ss_pred             ccceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .-++-+..+.++||+..|. -+|-- +-=+||+||+....++..     ...+++||.+..-+-.+.+....|....+.+
T Consensus       179 r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~frYL  252 (264)
T COG3257         179 RFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL  252 (264)
T ss_pred             CcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence            4467889999999998754 34432 345999999999999877     8999999999999999999888888776665


Q ss_pred             EE
Q 027585          173 TA  174 (221)
Q Consensus       173 ~~  174 (221)
                      ..
T Consensus       253 ly  254 (264)
T COG3257         253 LY  254 (264)
T ss_pred             EE
Confidence            43

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=95.75  E-value=0.05  Score=46.36  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=45.6

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEEEe-CEEEEEEEecC----------------CeEE------EEEecCCcEEEECCC
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIVIK-GKLLVGFFTTN----------------NVFY------SKVLSAGEMFVIPRG  156 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~-G~~~v~~~~~~----------------~~~~------~~~L~~GDv~~~P~g  156 (221)
                      -.+.+.+|+..|+|.|..-.|=++.-- |.+.+++-..+                |+..      ...|+||+++-+++|
T Consensus        90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg  169 (225)
T PF07385_consen   90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG  169 (225)
T ss_dssp             EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred             hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence            345678999999999988788777765 67766665431                2211      468999999999999


Q ss_pred             CeEEEEecCCccEEEEEEE
Q 027585          157 LIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       157 ~~H~~~N~g~~~a~~l~~~  175 (221)
                      ..|+++..+..  +++.=+
T Consensus       170 ~yH~Fw~e~g~--vLigEV  186 (225)
T PF07385_consen  170 IYHWFWGEGGD--VLIGEV  186 (225)
T ss_dssp             EEEEEEE-TTS--EEEEEE
T ss_pred             CeeeEEecCCC--EEEEee
Confidence            99999986544  444433

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=95.69  E-value=0.099  Score=48.75  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=44.9

Q ss_pred             CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .-.+.+++|++++-+|++++...-.     ...+++||.++||+|+.+++.- .+++++.+.+
T Consensus       148 ~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~  204 (438)
T PRK05341        148 YFYNADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC  204 (438)
T ss_pred             eeecCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence            3345567999999999999987655     7899999999999999999874 3455555443

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.66  E-value=0.092  Score=47.04  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=45.4

Q ss_pred             EEEEEEcCCC--cCCCCCCCCCcEEEEEEeCEEEEEEEecC------------------CeEEEEEecCCcEEEECCCCe
Q 027585           99 MNRVDFAPGG--LNPPHSHPRASESGIVIKGKLLVGFFTTN------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus        99 ~~~v~l~Pgg--~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      .+.+-+.|++  ...+|+=.. +-+++=++|+=++.+....                  ......+|+|||++|+|+|.+
T Consensus       115 ~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~  193 (319)
T PF08007_consen  115 GANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW  193 (319)
T ss_dssp             EEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred             ceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence            3455677777  689998664 7778888998888877621                  113479999999999999999


Q ss_pred             EEEEecC
Q 027585          159 HFQQNVG  165 (221)
Q Consensus       159 H~~~N~g  165 (221)
                      |.....+
T Consensus       194 H~~~~~~  200 (319)
T PF08007_consen  194 HQAVTTD  200 (319)
T ss_dssp             EEEEESS
T ss_pred             CCCCCCC
Confidence            9999988

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=95.45  E-value=0.14  Score=47.68  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .-...+++|++++-+|++.+...-.     ...+++||.++||+|+.+++.-.+  +++.+.
T Consensus       142 ~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~g--p~rgyi  196 (429)
T TIGR01015       142 AFYNADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLE--PARGYI  196 (429)
T ss_pred             eeeccCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence            3345566999999999999987655     789999999999999999997654  544443

Missing in human disease alkaptonuria.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=95.31  E-value=0.12  Score=45.05  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=47.8

Q ss_pred             eEEEEEEEcCCCcC-----CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585           97 ISMNRVDFAPGGLN-----PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus        97 is~~~v~l~Pgg~~-----~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +.+.++...+....     ..|.+.+.-.++++++|++.+..++.     ...+++||+++++++.+|.+.-.++
T Consensus        45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~  114 (302)
T PRK09685         45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGL  114 (302)
T ss_pred             EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCC
Confidence            45666665554321     23444454667888999999998777     8999999999999999998865444

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=95.30  E-value=0.051  Score=40.23  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=33.6

Q ss_pred             EEEcCCCcCCCCCCCCCc-EEEEEE---eCEEEEEEEecC------------------CeEEEEEecCCcEEEECCCCeE
Q 027585          102 VDFAPGGLNPPHSHPRAS-ESGIVI---KGKLLVGFFTTN------------------NVFYSKVLSAGEMFVIPRGLIH  159 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~-Ei~yVl---~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~~P~g~~H  159 (221)
                      ....+|+..++|.|+++. --+|-+   ++...+.+.++.                  ........++||+++||+-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            456788889999998732 112222   122223333221                  1244678899999999999999


Q ss_pred             EEEecCCccEEEEEEE
Q 027585          160 FQQNVGEGKALAFTAF  175 (221)
Q Consensus       160 ~~~N~g~~~a~~l~~~  175 (221)
                      .......+.-|+-..|
T Consensus        85 ~v~p~~~~~~Risisf  100 (101)
T PF13759_consen   85 GVPPNNSDEERISISF  100 (101)
T ss_dssp             EE----SSS-EEEEEE
T ss_pred             eccCcCCCCCEEEEEc
Confidence            9865433333444333

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.29  E-value=0.083  Score=40.10  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=46.9

Q ss_pred             CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEecCC-ccEEEEEE
Q 027585          107 GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNVGE-GKALAFTA  174 (221)
Q Consensus       107 gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~-~~a~~l~~  174 (221)
                      +...++|-|.+-+-+-||++|+++-.  |+.|.  ..+|++||+-++-+  |+.|.-.|.++ ++++.+-+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl  105 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL  105 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence            45568899999777789999998654  44454  57899999877765  57999999887 77777643

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=95.20  E-value=0.048  Score=44.18  Aligned_cols=71  Identities=15%  Similarity=0.249  Sum_probs=46.5

Q ss_pred             EEEEEEEcCCCcCCCCCCCCC----cEEEEEE-eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           98 SMNRVDFAPGGLNPPHSHPRA----SESGIVI-KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a----~Ei~yVl-~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .+....+.||+.+.||.-+..    ..+-+++ .+...+.++++     ++..++|++++|.-...|...|.|+++-+.+
T Consensus        81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~~-----~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L  155 (163)
T PF05118_consen   81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGGE-----TRHWREGECWVFDDSFEHEVWNNGDEDRVVL  155 (163)
T ss_dssp             EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETTE-----EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred             hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECCe-----EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence            345557899999999986532    2233444 35577777666     8899999999999999999999988764444


Q ss_pred             E
Q 027585          173 T  173 (221)
Q Consensus       173 ~  173 (221)
                      .
T Consensus       156 ~  156 (163)
T PF05118_consen  156 I  156 (163)
T ss_dssp             E
T ss_pred             E
Confidence            3

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=95.07  E-value=0.014  Score=50.76  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=44.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      +.-..+.++.|.....|+|.. .|-.|||+|++.++..+..+   ...|.+|-.+.-|.+..|... .+++++.++.-.+
T Consensus       171 ~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd  245 (251)
T PF14499_consen  171 YTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD  245 (251)
T ss_dssp             E-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred             eeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence            334556666677789999987 99999999999996543211   689999999999999999998 6788888887655


Q ss_pred             C
Q 027585          177 S  177 (221)
Q Consensus       177 s  177 (221)
                      .
T Consensus       246 G  246 (251)
T PF14499_consen  246 G  246 (251)
T ss_dssp             S
T ss_pred             C
Confidence            3

>PLN02658 homogentisate 1,2-dioxygenase

Probab=95.07  E-value=0.2  Score=46.71  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          113 HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       113 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      -.+.+++|++++-+|++.+...-.     ...+++||.++||+|+.+++.-. +++++.+.
T Consensus       142 f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv  196 (435)
T PLN02658        142 FCNADGDFLIVPQQGRLWIKTELG-----KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV  196 (435)
T ss_pred             eecCCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence            445567999999999999987655     78899999999999999988643 34555544

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=95.06  E-value=0.13  Score=42.99  Aligned_cols=68  Identities=29%  Similarity=0.391  Sum_probs=44.3

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEE-EeCEEEEEEEecC----------------CeEE------EEEecCCcEEEECCC
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIV-IKGKLLVGFFTTN----------------NVFY------SKVLSAGEMFVIPRG  156 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yV-l~G~~~v~~~~~~----------------~~~~------~~~L~~GDv~~~P~g  156 (221)
                      ..+.+.+|...|+|.|.+..|=+.= =.|++.+.+....                |+..      ...|+||+.+-+|+|
T Consensus        89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg  168 (225)
T COG3822          89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG  168 (225)
T ss_pred             eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence            4566789999999999854443221 2234444333211                2111      468999999999999


Q ss_pred             CeEEEEecCCc
Q 027585          157 LIHFQQNVGEG  167 (221)
Q Consensus       157 ~~H~~~N~g~~  167 (221)
                      ..|+++..+..
T Consensus       169 ~~HsFwae~g~  179 (225)
T COG3822         169 LYHSFWAEEGG  179 (225)
T ss_pred             ceeeeeecCCc
Confidence            99999975443

>TIGR02466 conserved hypothetical protein

Probab=94.97  E-value=0.12  Score=43.46  Aligned_cols=79  Identities=19%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             EEEEEEEcCCCcCCCCCCCCC--cEEEEEE--eCEEEEEEEecC-----------------C-eEEEEEecCCcEEEECC
Q 027585           98 SMNRVDFAPGGLNPPHSHPRA--SESGIVI--KGKLLVGFFTTN-----------------N-VFYSKVLSAGEMFVIPR  155 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a--~Ei~yVl--~G~~~v~~~~~~-----------------~-~~~~~~L~~GDv~~~P~  155 (221)
                      .+....+.+|+....|.|+++  +=+.||-  +|...+.+.++.                 . ......-++|++++||+
T Consensus        97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS  176 (201)
T TIGR02466        97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES  176 (201)
T ss_pred             eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence            355567789999999999984  1223333  122222222210                 0 01123458999999999


Q ss_pred             CCeEEEEecCCccEEEEEEEc
Q 027585          156 GLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       156 g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      -+.|...-...+.-++-..|+
T Consensus       177 ~L~H~v~p~~~~~~RISiSFN  197 (201)
T TIGR02466       177 WLRHEVPPNESEEERISVSFN  197 (201)
T ss_pred             CCceecCCCCCCCCEEEEEEe
Confidence            999998554334345444443

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=94.97  E-value=0.12  Score=43.42  Aligned_cols=89  Identities=20%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP  154 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P  154 (221)
                      ...|+.+..+....     .-...++++.+.||...|-|+|-+ -|.+.|++|.    +.+++|     .+.+||...-+
T Consensus       111 ~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~----~sde~G-----~y~vgD~~~~d  175 (216)
T COG3806         111 LGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHVG-IERTAVLEGA----FSDENG-----EYLVGDFTLAD  175 (216)
T ss_pred             ecCCcceeecccCC-----CCCceeEEEEeccCcccccccccc-eEEEEEEeec----cccCCC-----ccccCceeecC
Confidence            34455555554333     113578999999999999999987 9999999996    445644     67899999999


Q ss_pred             CCCeEEEEecCCccEEEEEEEcCC
Q 027585          155 RGLIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      .++-|.-.-..+.+|..+++...+
T Consensus       176 ~~v~H~piv~~~~eClcl~al~~~  199 (216)
T COG3806         176 GTVQHSPIVLPPGECLCLAALDGP  199 (216)
T ss_pred             CccccccccCCCCCceEEEEcCCC
Confidence            999998777778888888887643

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=94.96  E-value=0.057  Score=45.74  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             EcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585          104 FAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus       104 l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      -.|+.....|..++ .|++|=.+|...+.+.++ |+....++++||++..|+.++|.-.-
T Consensus        40 GGPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR   97 (279)
T KOG3995|consen   40 GGPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR   97 (279)
T ss_pred             cCCCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence            35666777888887 999999999999999986 66779999999999999999997543

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=94.72  E-value=0.21  Score=44.07  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             ceEEEEEEEcCCC---cCCCCCCCCCcEEEE---EEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           96 GISMNRVDFAPGG---LNPPHSHPRASESGI---VIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg---~~~~H~Hp~a~Ei~y---Vl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+-+....+.||+   ..|||.|++..|..+   +-++.-.+++.++-.+.....++-+|+++.|+-.+|...  |...-
T Consensus       174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y  251 (276)
T PRK00924        174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY  251 (276)
T ss_pred             cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence            4566667778998   369999997677444   223444445444333433489999999999999999864  56666


Q ss_pred             EEEEEEcCCC
Q 027585          170 LAFTAFNSHL  179 (221)
Q Consensus       170 ~~l~~~~s~~  179 (221)
                      .+++....+|
T Consensus       252 ~fiw~m~gen  261 (276)
T PRK00924        252 TFIWGMAGEN  261 (276)
T ss_pred             EEEEEecccC
Confidence            7888776665

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=94.68  E-value=0.14  Score=43.04  Aligned_cols=84  Identities=18%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC----------eEEEE-------EecCCc-EEEECC
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN----------VFYSK-------VLSAGE-MFVIPR  155 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~~~~~-------~L~~GD-v~~~P~  155 (221)
                      ...+++..+-++||..+|+|=||+-.=+.-|+.|++.+..-+.-.          +....       .-.+++ ++..|.
T Consensus        41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~  120 (200)
T PF07847_consen   41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPT  120 (200)
T ss_pred             CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccC
Confidence            335789999999999999999999666777999999997554310          11111       122223 556665


Q ss_pred             C--CeEEEEecCCccEEEEEEEcCC
Q 027585          156 G--LIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       156 g--~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      .  -+|.+.+.+ +++.++-++..+
T Consensus       121 ~ggNiH~f~a~~-~p~AflDIL~PP  144 (200)
T PF07847_consen  121 SGGNIHEFTALT-GPCAFLDILAPP  144 (200)
T ss_pred             CCCeeEEEEeCC-CCeEEEEEccCC
Confidence            4  899999987 899999998765

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.58  E-value=0.18  Score=44.25  Aligned_cols=62  Identities=16%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             cCCCcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCC-cEEEECCCCeEEEEecCC
Q 027585          105 APGGLNPPHSH-PRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAG-EMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       105 ~Pgg~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~G-Dv~~~P~g~~H~~~N~g~  166 (221)
                      -|++...+|.| ++..|.+.|++|++.+.+-+++|. .....+.+. +.-++|++..|+....++
T Consensus        19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~   83 (287)
T PRK12335         19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD   83 (287)
T ss_pred             chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence            47778899999 788999999999999998877764 344556664 565799999999988644

>COG1741 Pirin-related protein [General function prediction only]

Probab=94.05  E-value=0.24  Score=43.71  Aligned_cols=71  Identities=20%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEec--CCccEEEEEEE
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNV--GEGKALAFTAF  175 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~--g~~~a~~l~~~  175 (221)
                      ..++.||.-.+||-|.+-+-+.||++|+++-.  |+.|.  ...+++||+-.+-+  |+.|.-.|.  .++++..+-+.
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW  122 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW  122 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence            34688999999999999677789999998765  33344  68999999887775  578988886  34466665554

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=93.68  E-value=0.41  Score=44.23  Aligned_cols=58  Identities=10%  Similarity=0.044  Sum_probs=42.4

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      +.+.++++..+..   +...+..++++|++|++++...+.     +..|++|+++++|++......
T Consensus       321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEEE
Confidence            5677777755421   222234799999999999875444     688999999999998776554

>PRK10579 hypothetical protein; Provisional

Probab=93.63  E-value=1.7  Score=32.29  Aligned_cols=54  Identities=24%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             CCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          116 PRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       116 p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ..+.|+.-|++|++++.+.+++   ..+..++|+.|.+|++..-.++..  +....++.
T Consensus        39 T~~~E~MeivsG~l~V~Lpg~~---ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~   92 (94)
T PRK10579         39 TAEPEEMTVISGALNVLLPGAT---DWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR   92 (94)
T ss_pred             CCCcEEEEEEeeEEEEECCCCc---ccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence            3468999999999999998752   268999999999999998777653  44455544

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.63  E-value=0.91  Score=41.41  Aligned_cols=57  Identities=18%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..-...+.+|++++-+|++++..+-.     ..++++||..+||+|+..+.+-.+.+ ++.+.
T Consensus       139 ~~f~NADge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~-~rgy~  195 (427)
T COG3508         139 RFFRNADGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG  195 (427)
T ss_pred             hhhhcCCCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence            44456667999999999999987765     89999999999999999999876554 44443

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=93.59  E-value=0.87  Score=35.59  Aligned_cols=65  Identities=8%  Similarity=0.060  Sum_probs=44.6

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +.+.++.....-.....-+.+.--+.+.++|+..+...+.     ...+.+||+++++.+.++.+...++
T Consensus        34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~   98 (172)
T PF14525_consen   34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAG   98 (172)
T ss_pred             EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCC
Confidence            4455555443222211112333566777899999988776     9999999999999999998876543

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=93.51  E-value=0.53  Score=41.80  Aligned_cols=59  Identities=20%  Similarity=0.117  Sum_probs=43.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      .+.+.++++.....  ...+ +...+++|++|++++...+.     +..|++|+++++|++......
T Consensus       234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccEEE
Confidence            46777777754321  1123 35889999999999876444     788999999999999866554

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=93.44  E-value=0.85  Score=33.85  Aligned_cols=65  Identities=22%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.||.   .+....+.|+.-|++|++++.+.+++   ..+..++|+.+.+|++.--.++-.  ++...++.|
T Consensus        29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~---ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y   93 (94)
T PF06865_consen   29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED---EWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY   93 (94)
T ss_dssp             EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S---S-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred             EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc---ccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence            345555   22334468999999999999998752   278899999999999998887763  555565543

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=93.39  E-value=0.21  Score=36.96  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             eEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585          139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus       139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~  168 (221)
                      +..+.+.++||.+++|+|..|+..|.|..-
T Consensus        79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i  108 (114)
T PF02373_consen   79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI  108 (114)
T ss_dssp             --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred             ccccceECCCCEEEECCCceEEEEeCCceE
Confidence            455889999999999999999999998753

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=93.12  E-value=0.39  Score=35.80  Aligned_cols=69  Identities=17%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ..+.++||+......-++..-++||++|++.+  .++     ...+.+|+.+++..|..=.+.+.+ +.++++.+-.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G   70 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--GGE-----EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG   70 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--TTT-----TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--CCC-----cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence            46778888864322222336789999999765  343     368999999999977666666653 7777776543

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PLN02288 mannose-6-phosphate isomerase

Probab=92.81  E-value=0.33  Score=44.97  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=41.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCC
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGL  157 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~  157 (221)
                      .+++.++++.++.......+.+ .++++|++|++++...+.   ..+..|++|+++++|++.
T Consensus       333 eF~v~~~~l~~~~~~~~~~~~g-p~Illv~~G~~~i~~~~~---~~~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        333 EFEVDHCDVPPGASVVFPAVPG-PSVFLVIEGEGVLSTGSS---EDGTAAKRGDVFFVPAGT  390 (394)
T ss_pred             ceEEEEEEeCCCCeEeecCCCC-CEEEEEEcCEEEEecCCc---cceEEEeceeEEEEeCCC
Confidence            4678888887775422222344 899999999999864433   113679999999999864

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=92.68  E-value=1.4  Score=31.86  Aligned_cols=59  Identities=17%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             CcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCe--EEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          108 GLNPPHSH-PRASESGIVIKGKLLVGFFTTNNV--FYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       108 g~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~--~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +....|.- .+...-+-|++|++++...+++|.  .....+.+|+.-++++...|++...++
T Consensus        14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            34445543 456677999999999998887542  346789999999999999999998765

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=92.45  E-value=0.68  Score=31.66  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             EEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585          102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      +++.||....++-..  ...+-|.+|++-++..+.   ...+.|++||.+.+++|..-+...
T Consensus         2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g~---~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREGD---PDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEeEcCC--CcEEEEccccEEEECCCC---CCCEEECCCCEEEeCCCCEEEEEe
Confidence            356677776666544  344999999999887543   348999999999999998766554

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.61  E-value=0.14  Score=48.26  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             EEEcC-CC-cCCCCCCCCCcEEEEEEeCEEEEEEEecC-------------------C-eEEEEEecCCcEEEECCCCeE
Q 027585          102 VDFAP-GG-LNPPHSHPRASESGIVIKGKLLVGFFTTN-------------------N-VFYSKVLSAGEMFVIPRGLIH  159 (221)
Q Consensus       102 v~l~P-gg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-------------------~-~~~~~~L~~GDv~~~P~g~~H  159 (221)
                      +.+.| |. -.+|||-.- +-+++=++|+=.+.+-.+.                   | .+....|++||++|||+|.+|
T Consensus       321 vYLTPagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH  399 (629)
T KOG3706|consen  321 VYLTPAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH  399 (629)
T ss_pred             eeecCCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence            44544 44 479999875 6777888998877765432                   2 234688999999999999999


Q ss_pred             EEEecC
Q 027585          160 FQQNVG  165 (221)
Q Consensus       160 ~~~N~g  165 (221)
                      ......
T Consensus       400 QA~t~~  405 (629)
T KOG3706|consen  400 QADTPA  405 (629)
T ss_pred             eccccc
Confidence            876543

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=90.94  E-value=1  Score=41.14  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.+.+.++++|...-.-.-++ .-++.|++|++++... +.     ...+++||+++||+...-.+... +++...+-+
T Consensus       332 eF~v~~~~v~~g~~~~~~~~~~-~SIllv~~G~g~l~~~t~~-----~~~v~rG~V~fI~a~~~i~~~~~-sd~~~~yrA  404 (411)
T KOG2757|consen  332 EFAVLETKVPTGESYKFPGVDG-PSILLVLKGSGILKTDTDS-----KILVNRGDVLFIPANHPIHLSSS-SDPFLGYRA  404 (411)
T ss_pred             ceeEEEeecCCCceEEeecCCC-ceEEEEEecceEEecCCCC-----ceeeccCcEEEEcCCCCceeecc-Ccceeeeec
Confidence            3678888888866533333444 7899999999999877 44     78999999999999987755443 444443333

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=90.47  E-value=1.3  Score=36.09  Aligned_cols=77  Identities=21%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE---ecC---CeEEEEEecCCcEEEECCCCeEEEEecCCccEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTN---NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL  170 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~---~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~  170 (221)
                      +++..+++.||...|+|-|-- .-++=|+.|.-+-.+-   .++   .....+.+.+|++- ..+|.+|.+.|.+.....
T Consensus        73 ltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~  150 (191)
T COG5553          73 LTVYHITLSPGVQYPPHNHLM-WGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG  150 (191)
T ss_pred             EEEEEEEeCCCcccCCcccch-heeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence            578999999999999999965 8888888885433222   110   01113455566655 444666666666554333


Q ss_pred             EEEEE
Q 027585          171 AFTAF  175 (221)
Q Consensus       171 ~l~~~  175 (221)
                      .|-++
T Consensus       151 aiHvy  155 (191)
T COG5553         151 AIHVY  155 (191)
T ss_pred             eEEEE
Confidence            33333

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=89.74  E-value=5.8  Score=31.41  Aligned_cols=78  Identities=21%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeC-EEEEEEEecCCeEEEEEec----CCc--EEEECCCCeEEEEecCCccE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKG-KLLVGFFTTNNVFYSKVLS----AGE--MFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~L~----~GD--v~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+....-+.++....+|.= +++|+.+...| .+++.+.+++|+..+.+|.    +|+  .++||+|.....+..+...-
T Consensus        41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y  119 (139)
T PF06172_consen   41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDY  119 (139)
T ss_dssp             -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSE
T ss_pred             ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCE
Confidence            4556666778777777755 56999999988 7999999988887776773    454  68999999998865555555


Q ss_pred             EEEEEE
Q 027585          170 LAFTAF  175 (221)
Q Consensus       170 ~~l~~~  175 (221)
                      .+++..
T Consensus       120 ~Lvsc~  125 (139)
T PF06172_consen  120 SLVSCT  125 (139)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555443

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=89.42  E-value=0.48  Score=43.34  Aligned_cols=63  Identities=25%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC--e---------------EEEEEecCCcEEEECCCCeEEEEecC
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN--V---------------FYSKVLSAGEMFVIPRGLIHFQQNVG  165 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~--~---------------~~~~~L~~GDv~~~P~g~~H~~~N~g  165 (221)
                      -..+||.+.+||-+. +-+++=..|+=+.+++...+  +               ....++.|||++|+|+|.+|+....+
T Consensus       125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~  203 (383)
T COG2850         125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED  203 (383)
T ss_pred             EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence            457899999999876 66666667777777765421  1               12478999999999999999988763


Q ss_pred             C
Q 027585          166 E  166 (221)
Q Consensus       166 ~  166 (221)
                      +
T Consensus       204 d  204 (383)
T COG2850         204 D  204 (383)
T ss_pred             c
Confidence            3

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=89.18  E-value=2.7  Score=37.80  Aligned_cols=59  Identities=15%  Similarity=0.088  Sum_probs=43.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      .+++.+.++..  ....-.+ +...+++|++|++++...++     +..|++|+.+++|+...-+..
T Consensus       241 ~F~l~~~~i~~--~~~~~~~-~~~~il~v~eG~~~l~~~~~-----~~~l~~G~s~~ipa~~~~~~i  299 (312)
T COG1482         241 DFALYKWDISG--TAEFIKQ-ESFSILLVLEGEGTLIGGGQ-----TLKLKKGESFFIPANDGPYTI  299 (312)
T ss_pred             ceEEEEEeccC--hhhhccC-CCcEEEEEEcCeEEEecCCE-----EEEEcCCcEEEEEcCCCcEEE
Confidence            35667776654  1111112 25999999999999998876     999999999999999554443

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=88.80  E-value=3.3  Score=36.64  Aligned_cols=54  Identities=15%  Similarity=0.006  Sum_probs=40.5

Q ss_pred             CcEE-EEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe--cCCccEEEEEEEc
Q 027585          118 ASES-GIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN--VGEGKALAFTAFN  176 (221)
Q Consensus       118 a~Ei-~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N--~g~~~a~~l~~~~  176 (221)
                      ..|+ ++.+.|++++.++++     ++.|.+.|++++|+|..-....  ....++++.....
T Consensus        73 rrE~giV~lgG~~~V~vdG~-----~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sA  129 (276)
T PRK00924         73 RRELGIINIGGAGTVTVDGE-----TYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSA  129 (276)
T ss_pred             CcEEEEEEccceEEEEECCE-----EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcc
Confidence            3665 667789999999887     8889999999999998765553  2345677665543

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=87.95  E-value=3  Score=36.47  Aligned_cols=69  Identities=14%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe-cCCeEEEEEecCC--------cEEEECCCCeEEEEecCCc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT-TNNVFYSKVLSAG--------EMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~-~~~~~~~~~L~~G--------Dv~~~P~g~~H~~~N~g~~  167 (221)
                      +.+..++|++|.....-...+ +-.++.++|++++.+++ +     .+.+..-        |++++|+|..-.+.+.++ 
T Consensus        27 ~~~~~l~L~~g~~~~~~~~~~-E~~vv~l~G~~~v~~~g~~-----~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-   99 (261)
T PF04962_consen   27 MGFGVLRLEAGESLEFELERR-ELGVVNLGGKATVTVDGEE-----FYELGGRESVFDGPPDALYVPRGTKVVIFASTD-   99 (261)
T ss_dssp             BECCCEEEECCHCCCCCCCSE-EEEEEEESSSEEEEETTEE-----EEEE-TTSSGGGS--EEEEE-TT--EEEEESST-
T ss_pred             cceEEEEecCCCEEeccCCCc-EEEEEEeCCEEEEEeCCce-----EEEecccccccCCCCcEEEeCCCCeEEEEEcCC-
Confidence            345667888888765553332 55567789999999976 3     6677777        999999999988888544 


Q ss_pred             cEEEEE
Q 027585          168 KALAFT  173 (221)
Q Consensus       168 ~a~~l~  173 (221)
                       +++..
T Consensus       100 -ae~~~  104 (261)
T PF04962_consen  100 -AEFAV  104 (261)
T ss_dssp             -EEEEE
T ss_pred             -CEEEE
Confidence             55544

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=86.33  E-value=7.7  Score=32.58  Aligned_cols=76  Identities=12%  Similarity=0.037  Sum_probs=49.1

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .......+++|...-..-.+ ...+.+|++|.+.+...+++|+. ....+.+||.+=+..+.++.....-.++++++.
T Consensus        36 ~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~  112 (230)
T PRK09391         36 LVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL  112 (230)
T ss_pred             ceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence            34566778888765443333 47889999999999988777763 445678999886665544433333334455443

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=86.15  E-value=7.8  Score=31.52  Aligned_cols=52  Identities=12%  Similarity=0.088  Sum_probs=37.0

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEEE
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMFV  152 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~~  152 (221)
                      ....+++|...-..-.+ ...+.+|++|.+++...+.+|+ .....+.+||.+-
T Consensus        21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g   73 (211)
T PRK11753         21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG   73 (211)
T ss_pred             eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe
Confidence            45567777755333233 4789999999999988776664 4456789999873

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=85.39  E-value=2.4  Score=29.07  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEE
Q 027585          118 ASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMF  151 (221)
Q Consensus       118 a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~  151 (221)
                      ...+.+|++|.+.+...+.+++. ....+.+||.+
T Consensus        17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~   51 (91)
T PF00027_consen   17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF   51 (91)
T ss_dssp             ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred             CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence            48999999999999999887753 36788888875

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=84.66  E-value=4.8  Score=35.24  Aligned_cols=97  Identities=20%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             eeEEEeeccccCCCcccceEEEEEEEcCCC---cCCCCCCCCC--------cEEEEEE-e---CEEEEEEEecC-CeEEE
Q 027585           79 SAVTPANVLAFPGVNTLGISMNRVDFAPGG---LNPPHSHPRA--------SESGIVI-K---GKLLVGFFTTN-NVFYS  142 (221)
Q Consensus        79 ~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg---~~~~H~Hp~a--------~Ei~yVl-~---G~~~v~~~~~~-~~~~~  142 (221)
                      -.|......+.+...  .+-+..+. .|+|   .-|||.|++.        +|+.|-- .   |-+.-.+-..+ ..-..
T Consensus       135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~  211 (261)
T PF04962_consen  135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH  211 (261)
T ss_dssp             EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred             EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence            445555544444222  35555555 6655   3699999873        3444442 2   33332222211 12237


Q ss_pred             EEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC
Q 027585          143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL  179 (221)
Q Consensus       143 ~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~  179 (221)
                      +.++-||++.+|+| .|-+.........++++....+
T Consensus       212 ~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~  247 (261)
T PF04962_consen  212 YVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN  247 (261)
T ss_dssp             EEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred             EEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence            89999999999999 4444333334455888888777

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PHA02984 hypothetical protein; Provisional

Probab=82.44  E-value=11  Score=33.10  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             cEEE--EEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          119 SESG--IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       119 ~Ei~--yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .|.+  .+++|+.++.+... ++..+..+++||.|.+.-+.-|.... +++.++++.+-
T Consensus        92 nEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~  148 (286)
T PHA02984         92 NEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVIT  148 (286)
T ss_pred             ccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEE
Confidence            4544  55689999988764 56678999999999999999999875 45566655543

>PHA02890 hypothetical protein; Provisional

Probab=80.37  E-value=15  Score=32.24  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             cEEE--EEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE-EcCCCCeeeeccchhh
Q 027585          119 SESG--IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA-FNSHLPGAVIVPTTLF  190 (221)
Q Consensus       119 ~Ei~--yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~-~~s~~pg~~~~~~~lf  190 (221)
                      .|.+  .+++|+.++.+.. +++..+..+++||.+.+.-+.-|....   +.+.++.+ +....| ++..-+-+|
T Consensus        91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p-fiy~kNVVf  160 (278)
T PHA02890         91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH-IFYGQNVII  160 (278)
T ss_pred             ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce-EEEecceEE
Confidence            4554  4568999998875 366678999999999999999999876   55555554 333333 344433333

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=80.22  E-value=7.1  Score=31.60  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=35.5

Q ss_pred             EEEEcCCCcCCCCCCC-CCcEEEEEEeCEEEEEEEecCCeEE-EEEecCCcEEEE
Q 027585          101 RVDFAPGGLNPPHSHP-RASESGIVIKGKLLVGFFTTNNVFY-SKVLSAGEMFVI  153 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~-~~~L~~GDv~~~  153 (221)
                      ...+++|...-..--+ ....+.+|++|.+++...+.+|+.. ...+.+||++=.
T Consensus         8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~   62 (202)
T PRK13918          8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE   62 (202)
T ss_pred             eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence            3456666543222121 2377999999999999988888644 455699997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
2ete_A	201	Recombinant Oxalate Oxidase In Complex With Glycola		5e-55
1fi2_A	201	Crystal Structure Of Germin (Oxalate Oxidase) Lengt		6e-55
2et7_A	201	Structural And Spectroscopic Insights Into The Mech		3e-54
2vqa_A	361	Protein-Folding Location Can Regulate Mn Versus Cu-		1e-04

>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate Length = 201

Iteration: 1
 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/197 (56%), Positives = 135/197 (68%), Gaps = 5/197 (2%)
Query: 28  ADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
           +DPDPLQDFCVADL   A S+NG  CK  +E      F   L+K GNT T  GSAVT  +
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYS 142
           V  +PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG      + N  YS
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
           +V+ AGE FVIPRGL+HFQ NVG+ +A    +FNS  PG V VP TLF S P +P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 203 KTFQVDDDLISTIKSKF 219
           K  +V+  ++  +KSKF
Sbjct: 181 KALRVEAGVVELLKSKF 197

>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase) Length = 201

Iteration: 1
 Score =  210 bits (534), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 134/196 (68%), Gaps = 5/196 (2%)
Query: 29  DPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPANV 86
           DPDPLQDFCVADL   A S+NG  CK  +E      F   L+K GNT T  GSAVT  +V
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 87  LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYSK 143
             +PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG      + N  YS+
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
           V+ AGE FVIPRGL+HFQ NVG+ +A    +FNS  PG V VP TLF S P +P  VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 204 TFQVDDDLISTIKSKF 219
             +V+  ++  +KSKF
Sbjct: 182 ALRVEAGVVELLKSKF 197

>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism Of Oxalate Oxidase Length = 201

Iteration: 1
 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 134/197 (68%), Gaps = 5/197 (2%)
Query: 28  ADPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPAN 85
           +DPDPLQDFCVADL   A S+NG  CK  +E      F   L+K GNT T  GSAVT  +
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF---TTNNVFYS 142
           V  +PG NTLG+SM RVDFAPGG NPPH HPRA+E G+V+KG+LLVG      + N  YS
Sbjct: 61  VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
           +V+ AGE FVIPRGL+HFQ NVG+ +A    +FNS  PG V VP TLF S P +P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 203 KTFQVDDDLISTIKSKF 219
           K  +V+  ++  +KSKF
Sbjct: 181 KALRVEAGVVELLKSKF 197

>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn- Binding. Crystal Structure Of Mnca. Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 68  LSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKG 127
           L ++   ++ G+ +  A+   FPG  +  ++   +   PG +   H HP A E   V+ G
Sbjct: 207 LGQQPLVSLGGNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDG 264
Query: 128 KLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPT 187
           ++ +  F +        L  G++  +P+G  H  +N  +        FN     ++ + +
Sbjct: 265 EMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDL-S 323
Query: 188 TLFASTPSVPNQVLTKTFQVDDDLISTI 215
           T  AS PS    VL  TFQ+  +L   +
Sbjct: 324 TWLASNPS---SVLGNTFQISPELTKKL 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	8e-67
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	5e-42
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	4e-38
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-37
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	3e-31
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	1e-34
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	3e-33
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	1e-13
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	4e-32
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-24
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-31
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	7e-11
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	1e-30
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	1e-10
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	3e-29
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	3e-04
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	9e-29
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	4e-27
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-26
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	4e-16
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	5e-12
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	4e-15
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	7e-04
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	1e-13
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	4e-13
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	5e-11
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	2e-10
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	6e-10
1v70_A	105	Probable antibiotics synthesis protein; structural	3e-09
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	4e-09
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	5e-09
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	5e-09
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	1e-04
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	6e-09
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	3e-08
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	5e-08
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	1e-07
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	2e-07
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	7e-07
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	7e-07
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	2e-06
3h8u_A	125	Uncharacterized conserved protein with double-STR	2e-06
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	2e-06
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	1e-04
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	2e-06
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	3e-06
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	4e-06
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	4e-06
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	1e-05
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	5e-05
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	1e-04
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	1e-04
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	1e-04
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	2e-04
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	4e-04
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	7e-04
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	8e-04

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score =  203 bits (517), Expect = 8e-67
 Identities = 110/197 (55%), Positives = 134/197 (68%), Gaps = 5/197 (2%)

Query: 29  DPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNTT-IFGSAVTPANV 86
           DPDPLQDFCVADL   A S+NG  CK  +E      F   L+K GNT+   GSAVT  +V
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61

Query: 87  LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT---TNNVFYSK 143
             +PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG      + N  YS+
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121

Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
           V+ AGE FVIPRGL+HFQ NVG+ +A    +FNS  PG V VP TLF S P +P  VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181

Query: 204 TFQVDDDLISTIKSKFG 220
             +V+  ++  +KSKF 
Sbjct: 182 ALRVEAGVVELLKSKFA 198

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  136 bits (344), Expect = 4e-38
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 63  FFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESG 122
                 S          +VT A  L FP ++ L +S          +  PH +  A+   
Sbjct: 304 HNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSII 363

Query: 123 IVIKGKLLVGFFTTN-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAFNSHLP 180
             + G+ L+     N    +   L  G + ++P+  +   ++  +  + ++F   ++ + 
Sbjct: 364 YALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMI 423

Query: 181 GAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
           G +    +L  + P    +V+  TF +       IK+ 
Sbjct: 424 GTLAGANSLLNALPE---EVIQHTFNLKSQQARQIKNN 458

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  133 bits (335), Expect = 1e-37
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 7/204 (3%)

Query: 16  VLLLILPLPLYSADPDPLQDFCVADLKASASLNGFPCKLAAEVTSGDFFFDGLSKEGNTT 75
            +   L          P +   ++    ++                      L  +    
Sbjct: 154 WVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQTAKIEVPHTHNLLGQQPLV 213

Query: 76  I-FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF 134
              G+ +  A+   FPG  +  ++   +   PG +   H HP A E   V+ G++ +  F
Sbjct: 214 SLGGNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF 271

Query: 135 TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTP 194
            +        L  G++  +P+G  H  +N  +        FN     ++ + T L +   
Sbjct: 272 ASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWLAS--- 328

Query: 195 SVPNQVLTKTFQVDDDLISTIKSK 218
             P+ VL  TFQ+  +L   +  +
Sbjct: 329 -NPSSVLGNTFQISPELTKKLPVQ 351

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  116 bits (291), Expect = 3e-31
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 7/154 (4%)

Query: 68  LSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKG 127
            SK       G          FP     G++   +   PG +   H H  A+E   V++G
Sbjct: 25  FSKTPLVLYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEG 82

Query: 128 KLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPT 187
           +  +   +         +  G ++  PRG  H  + +G   A     FN           
Sbjct: 83  RTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFS---EGA 139

Query: 188 TLFAST--PSVPNQVLTKTFQVDDDLISTIKSKF 219
           T   +      P   + +        ++ +  K 
Sbjct: 140 TFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQ 173

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  128 bits (321), Expect = 1e-34
 Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 63  FFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESG 122
                            ++  AN L    +  LG+S    +     L  PH +  A    
Sbjct: 338 KNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSII 397

Query: 123 IVIKGKLLVGFFTTN-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG 181
             ++G+  V    +N N  Y + L  G + V+P+      ++  +             P 
Sbjct: 398 YALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDN-FEYVAFKTDSRPS 456

Query: 182 AVIVPTTLFAST---PSVPNQVLTKTFQVDDDLISTIKSK 218
                  L        ++P +V+  ++ +  +    +K+ 
Sbjct: 457 ----IANLAGENSVIDNLPEEVVANSYGLPREQARQLKNN 492

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  122 bits (307), Expect = 3e-33
 Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 14/175 (8%)

Query: 57  EVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHP 116
           E++S D  F+  + +   +              P +  L + ++ VD   G L  PH   
Sbjct: 226 ELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSS 285

Query: 117 RASESGIVIKGKLLVGFFTTNNV-------------FYSKVLSAGEMFVIPRGLIHFQQN 163
           +A    ++ +G+  +     ++               Y   LS  ++FVIP         
Sbjct: 286 KAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINA 345

Query: 164 VGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
                  AF   N+       +          +P +VL  +F      +  +  K
Sbjct: 346 TSNLNFFAFG-INAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKK 399

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 68.0 bits (165), Expect = 1e-13
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 15/150 (10%)

Query: 79  SAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN 138
             +   +  +    N     +      P  L  PH H  A    +V+ G  ++     ++
Sbjct: 43  RVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDS 101

Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA----------FNSHLPGAVIVPTT 188
              S +L  G    IP G   F  N  + + L              F      +     +
Sbjct: 102 RD-SYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQS 160

Query: 189 LFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
                      +L  +F  D   I+ +   
Sbjct: 161 YLRGFSK---NILEASFDSDFKEINRVLFG 187

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score =  119 bits (298), Expect = 4e-32
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 7/169 (4%)

Query: 51  PCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLN 110
             +         F +  L +E   +  G  V  A+   F    T  I+   V   PG + 
Sbjct: 214 IVEGPNGEVPYPFTYRLLEQEPIESEGGK-VYIADSTNFKVSKT--IASALVTVEPGAMR 270

Query: 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170
             H HP   E    I GK  +  F ++    +    AG++  +P  + H+ +N+G+   +
Sbjct: 271 ELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLV 330

Query: 171 AFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
               F       V +   L      +P   +     +  D    +  + 
Sbjct: 331 FLEIFKDDHYADVSLNQWLAM----LPETFVQAHLDLGKDFTDVLSKEK 375

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 98.8 bits (245), Expect = 1e-24
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 8/168 (4%)

Query: 51  PCKLAAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLN 110
           P      V++  F F   S   N    G       V   P      ++   +   PG + 
Sbjct: 38  PETDHGTVSNMKFSF---SDTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIR 92

Query: 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170
             H H  A E   +I G   V         +   +  G+++  P GL H  Q + EG A 
Sbjct: 93  ELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEG-AE 150

Query: 171 AFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
               F+            L       P +V+   F V  + IS +  K
Sbjct: 151 FLLVFDDGSFSENS-TFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK 197

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  117 bits (294), Expect = 3e-31
 Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 15/173 (8%)

Query: 60  SGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRAS 119
           S D  F+  S+    +              P +  L I ++ VD   G L  PH + +A 
Sbjct: 212 SEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAI 271

Query: 120 ESGIVIKGKLLVGFFTTNN--------------VFYSKVLSAGEMFVIPRGLIHFQQNVG 165
              ++ +G   +                       Y   LS  ++FVIP           
Sbjct: 272 VILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATS 331

Query: 166 EGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
               LAF   N+       +          +  QV    F      +  +  K
Sbjct: 332 NLNFLAFG-INAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKK 383

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 59.9 bits (144), Expect = 7e-11
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV 152
           N     + +    P  +  PH H  A     V+ G+ ++     ++   S  L  G+   
Sbjct: 45  NLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDD-RDSYNLHPGDAQR 102

Query: 153 IPRGLIHFQQNVGEGKALA----------FTAFNSHLPGAVIVPTTLFASTPSVPNQVLT 202
           IP G  ++  N  + + L              ++     +     +           +L 
Sbjct: 103 IPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSH---NILE 159

Query: 203 KTFQVDDDLISTIKSK 218
            +F  + + I+ +   
Sbjct: 160 TSFHSEFEEINRVLFG 175

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  116 bits (290), Expect = 1e-30
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 62  DFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASES 121
           D  F+  S++   +     +          +  L I +N +    G L  PH + RA+  
Sbjct: 246 DKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVI 305

Query: 122 GIVIKGKLLVGFF-----------TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170
            +  +G+  V              +     Y+  LS G++ VIP       +   +   +
Sbjct: 306 LVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMV 365

Query: 171 AFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
                N+       +          +P QV   TF    + +  +   
Sbjct: 366 GIG-VNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLEN 412

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 9/147 (6%)

Query: 79  SAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN 138
             +   N       N     +      P  L  PH H  +    +V++G+ ++     + 
Sbjct: 68  RLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 126

Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPN 198
              +  L  G+   I  G   +  N    + L    F         V     +ST  +P+
Sbjct: 127 RD-TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 185

Query: 199 -------QVLTKTFQVDDDLISTIKSK 218
                    L  ++    D I     +
Sbjct: 186 YLSAFSKNFLEASYDSPYDEIEQTLLQ 212

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  112 bits (281), Expect = 3e-29
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 9/146 (6%)

Query: 77  FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT 136
            G  ++ AN    P +  + +S  R       +  PH    +       +G   V     
Sbjct: 302 RGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDN 361

Query: 137 N-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAST-- 193
                +   +  G++ +IP+  +  ++    G         +           L      
Sbjct: 362 FGQSVFDGEVREGQVLMIPQNFVVIKRASDRG-FEWIAFKTNDNAI----TNLLAGRVSQ 416

Query: 194 -PSVPNQVLTKTFQVDDDLISTIKSK 218
              +P  VL+  +++  +    +K  
Sbjct: 417 MRMLPLGVLSNMYRISREEAQRLKYG 442

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 22/132 (16%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF---------------------F 134
           G++M R    P GL  P     A +   V +G  + G                       
Sbjct: 62  GVNMIRHTIRPKGLLLPGFSN-APKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSA 120

Query: 135 TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTP 194
             +     +    G++ V+P G+ H+  N G+   +     ++      I P        
Sbjct: 121 FKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLA 180

Query: 195 SVPNQVLTKTFQ 206
             P QV     +
Sbjct: 181 GRPEQVERGVEE 192

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  111 bits (278), Expect = 9e-29
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 77  FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT 136
               +     L  P +  L +S          +  PH +  A+     +KG+  +     
Sbjct: 338 EAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNC 397

Query: 137 N-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFT----AFNSHLPGAVIVPTTLF 190
           N N  +   L AG    +P+      +++ +    +AF     A  + L G     +++ 
Sbjct: 398 NGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGT----SSVI 453

Query: 191 ASTPSVPNQVLTKTFQVDDDLISTIKSK 218
            +    P  V+  TF +  +    +KS 
Sbjct: 454 NNL---PLDVVAATFNLQRNEARQLKSN 478

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  106 bits (265), Expect = 4e-27
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN 137
              ++  N    P +  L +S  R       +  P  +  A+    V  G+  V     N
Sbjct: 304 LGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDN 363

Query: 138 -NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAST-PS 195
            +  +   +S G++  IP+G    ++   E     +  F ++   A I       S    
Sbjct: 364 GDRVFDGQVSQGQLLSIPQGFSVVKRATSEQ--FRWIEFKTN-ANAQINTLAGRTSVLRG 420

Query: 196 VPNQVLTKTFQVDDDLISTIKSK 218
           +P +V++  +Q+  +    +K  
Sbjct: 421 LPLEVISNGYQISLEEARRVKFN 443

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  105 bits (262), Expect = 1e-26
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 62  DFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASES 121
               D  SK    T     +T  N    P +  L +S  +       +  PH +  A   
Sbjct: 288 AVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNI 347

Query: 122 GIVIKGKLLVGFFTTN-NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLP 180
              ++G+  +          + + LS G++ V+P+     +Q   +G     +   S   
Sbjct: 348 MYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEW-VSFKTSENA 406

Query: 181 GAVIVPTTLFAST---PSVPNQVLTKTFQVDDDLISTIKSK 218
                  +L   T    S+P  V++  +Q+  +    +K  
Sbjct: 407 M----FQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFN 443

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 75.3 bits (184), Expect = 4e-16
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 38/173 (21%)

Query: 77  FGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT 136
           FG           P +  L + +  V+   G L  PH + +A    +V KG   +     
Sbjct: 243 FGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAV 302

Query: 137 NNVF-------------------------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALA 171
                                        Y+  L  G++F++P           E   L 
Sbjct: 303 RKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLLG 362

Query: 172 FT--AFNSHLPGAVIVPTTLFASTPSV----PNQVLTKTFQVDDDLISTIKSK 218
           F   A N+H          L     +V      Q     F    + +  +   
Sbjct: 363 FGINAENNH-------RIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKN 408

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 63.3 bits (153), Expect = 5e-12
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 79  SAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN 138
             +   +  +    N     + +++  P  L  P  H  A    ++ +G+  V     NN
Sbjct: 26  RVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANGNN 84

Query: 139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL--AFTAFNSHLPGAVIVPTTLFASTPSV 196
              S  L  G    IP G I +  N  + + L  A  +   + PG         +   S 
Sbjct: 85  RK-SFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSS 143

Query: 197 -----PNQVLTKTFQVDDDLISTIKSK 218
                    L   F  + + I  +  +
Sbjct: 144 YLQGFSRNTLEAAFNAEFNEIRRVLLE 170

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 72.2 bits (176), Expect = 4e-15
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-------VFYSKVL 145
           N+L + ++ ++   G L  PH + +A    +V +G+  V                Y   L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFT-----AFNSHLPGAV-IVPTTLFASTPSVPNQ 199
           S  ++FVIP       +         F         + L G    V +++          
Sbjct: 295 SKDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIG--RALDGKD 352

Query: 200 VLTKTFQVDDDLISTIKSK 218
           VL  TF    D +  + +K
Sbjct: 353 VLGLTFSGSGDEVMKLINK 371

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 18/136 (13%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-----NVFYSKVLSAGEMF 151
             +      P  L  P     A    +V  G  ++     +         S      +  
Sbjct: 52  YRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQ 110

Query: 152 VIPRGLIHFQQNVGEGKALAFTAF--NSHLPG-------AVIVPTTLFASTPSVPNQVLT 202
            IP G I +  N    + L         + P        +     +           +L 
Sbjct: 111 KIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSK---HILE 167

Query: 203 KTFQVDDDLISTIKSK 218
            +F    + I+ +  +
Sbjct: 168 ASFNSKFEEINRVLFE 183

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSK----VLSAGEMFV 152
           + +     +PG   P H H    E   V+KGK  +   +++  +  +           F 
Sbjct: 41  VEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99

Query: 153 IPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPS 195
           IP    H   N  E + L      S  P  + +         +
Sbjct: 100 IPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTA 142

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 15/132 (11%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG 156
             +      P  L  PH H  +    +V++G+ ++     +    +  L  G+   I  G
Sbjct: 41  YRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAG 98

Query: 157 LIHFQQNVGEGKALAFTA----------FNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQ 206
              +  N    + L                     +     +  ++        L  ++ 
Sbjct: 99  TPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSK---NFLEASYD 155

Query: 207 VDDDLISTIKSK 218
              D I     +
Sbjct: 156 SPYDEIEQTLLQ 167

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 60.7 bits (146), Expect = 5e-11
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 17/146 (11%)

Query: 81  VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NV 139
           ++  N    P +  L +S  R  F   G+  PH +  A     VI+G   V     N + 
Sbjct: 378 ISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDA 437

Query: 140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN-------SHLPGAVIVPTTLFAS 192
              + +  G++F++P+     QQ   +G    + AF        + L G       L   
Sbjct: 438 ILDQEVQQGQLFIVPQNHGVIQQAGNQG--FEYFAFKTEENAFINTLAGRTSFLRAL--- 492

Query: 193 TPSVPNQVLTKTFQVDDDLISTIKSK 218
               P++VL   +Q+  +    +K  
Sbjct: 493 ----PDEVLANAYQISREQARQLKYN 514

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Length = 126

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 62  DFFFDGLSKEGNTTIF----GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPR 117
           +    G  +E     +      + +P    A   +    + +N V   P    P H HP 
Sbjct: 2   NAMSTGEQREFAPAFYDLTEVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHP- 60

Query: 118 ASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176
             ++G++++G L     T      ++VL  G  + IP G+ H  +   +G  L    F+
Sbjct: 61  HEQAGVMLEGTLE---LTIGEE--TRVLRPGMAYTIPGGVRHRARTFEDG-CLVLDIFS 113

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 55.0 bits (132), Expect = 6e-10
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 6/83 (7%)

Query: 90  PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE 149
            G           +  PGG      H   +   +V++G         ++      L+  +
Sbjct: 49  AGQEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGH---AEVVLDDRVE--PLTPLD 102

Query: 150 MFVIPRGLIHFQQNVGEGKALAF 172
              I     H     G  + L F
Sbjct: 103 CVYIAPHAWHQIHATGANEPLGF 125

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 82  TPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFY 141
            P  +   P   +  +  +     PG     H H  + +    ++G+             
Sbjct: 13  NPEKMAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGE---VVVRVGEEEA 69

Query: 142 SKVLSAGEMFVIPRGLIHFQQNVGEGKA 169
             +L+ G     P G  H  +N     A
Sbjct: 70  --LLAPGMAAFAPAGAPHGVRNESASPA 95

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 52.1 bits (125), Expect = 4e-09
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
              M      PGGL   HSHP       V+KGK                +  G    +  
Sbjct: 47  NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGK---LTVLKEQGEE--TVEEGFYIFVEP 100

Query: 156 GLIHFQQNVGE 166
             IH  +N  +
Sbjct: 101 NEIHGFRNDTD 111

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 4/84 (4%)

Query: 86  VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL 145
            L           +   + +P G  PPH H        V++G + +             +
Sbjct: 28  KLIDTPDGADRFVLTEFEVSPNGSTPPHFHEW-EHEIYVLEGSMGLVLPDQGRTE---EV 83

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKA 169
             GE   IPRG  H          
Sbjct: 84  GPGEAIFIPRGEPHGFVTGPGQTC 107

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 54.4 bits (130), Expect = 5e-09
 Identities = 15/75 (20%), Positives = 27/75 (36%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV 152
               +       +      PH H +  E+    KG   +   + N    ++VLS+G+   
Sbjct: 46  YAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGS 105

Query: 153 IPRGLIHFQQNVGEG 167
           +PR + H  Q     
Sbjct: 106 VPRNVTHTFQIQDPD 120

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 70  KEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKL 129
           K  N+      V P             +S   +   P  +  P      + +  V +G++
Sbjct: 224 KYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRV 283

Query: 130 LVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTA 174
           +V             L +G++  IP G+     +     K L  ++
Sbjct: 284 VVQIGDYAAT----ELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS 325

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
                R+   PG     H H    E   ++ G+   G F  N       + AG++     
Sbjct: 56  ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGE---GVFHDNGK--DVPIKAGDVCFTDS 110

Query: 156 GLIHFQQNVGE 166
           G  H  +N G 
Sbjct: 111 GESHSIENTGN 121

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 71  EGNTTIFGSAVTPANVLAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKL 129
           EG   +FG  V  A V+A  G +T     +  +    G   P H H    E  +V+ GKL
Sbjct: 22  EGERYLFGRQV--ATVMA-NGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKL 78

Query: 130 LVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG 167
                T +   Y  +L +G+   IP G  H  +     
Sbjct: 79  E---LTLDGERY--LLISGDYANIPAGTPHSYRMQSHR 111

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG 156
             +   +   G     H H   +E+   ++G++ +             L+ G+   +P  
Sbjct: 218 FIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPAN 272

Query: 157 LIHFQQNVGE 166
            +H  +    
Sbjct: 273 TVHSYRLDSH 282

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Length = 102

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
           +N     + +V+    G    H H    E  IV++G L + F        +  L AGEM+
Sbjct: 28  MNDYQFKLVKVE----GEFVWHEHADTDEVFIVMEGTLQIAFRDQ-----NITLQAGEMY 78

Query: 152 VIPRGLIHFQQNVGEGKALAF 172
           VIP+G+ H      E K +  
Sbjct: 79  VIPKGVEHKPMAKEECKIMII 99

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Length = 107

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170
             H+H  + +    ++G + V F    ++     +  GEM V+P+ + H  ++      +
Sbjct: 41  GWHTHGYSDKVLFAVEGDMAVDFADGGSM----TIREGEMAVVPKSVSHRPRSENGCSLV 96

Query: 171 AF 172
             
Sbjct: 97  LI 98

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 6/76 (7%)

Query: 91  GVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEM 150
               L       +   GG +    H     + ++ +G    G            ++ G++
Sbjct: 38  ADPNLACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGH---GQCLVGETIS--DVAQGDL 91

Query: 151 FVIPRGLIHFQQNVGE 166
             IP    H  +    
Sbjct: 92  VFIPPMTWHQFRANRG 107

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 96  GISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154
           G  ++      G   P  HSH +  E   ++ GK   GF T +       L AG+   I 
Sbjct: 25  GAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGK---GFITIDGEKI--ELQAGDWLRIA 79

Query: 155 RGLIHFQQNVGE 166
                      +
Sbjct: 80  PDGKRQISAASD 91

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Length = 115

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
           V    + +       G     HS P       ++ G       T +    +  ++ G+  
Sbjct: 35  VQRQDLGITVFSLDKGQEIGRHSSPGD-AMVTILSGLAE---ITIDQE--TYRVAEGQTI 88

Query: 152 VIPRGLIHFQQNVGEGKAL 170
           V+P G+ H    V   + L
Sbjct: 89  VMPAGIPHALYAVEAFQML 107

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 98  SMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGL 157
            +      PG     H HP   ++  VI G+        N +     L AG++ +   G 
Sbjct: 40  VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEY--HQGNGIVT--HLKAGDIAIAKPGQ 95

Query: 158 IHFQQNVGE 166
           +H   N G 
Sbjct: 96  VHGAMNSGP 104

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV 164
             GG  P H H    + GI I G       T      +  +  G  +       H   N 
Sbjct: 154 GNGGEMPFHKHR-NEQIGICIGGGY---DMTVEGC--TVEMKFGTAYFCEPREDHGAINR 207

Query: 165 GEGKALAFTAF 175
            E ++ +   F
Sbjct: 208 SEKESKSINIF 218

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSA-GEMFVIP 154
              +      P     PH H    + G+V+ G+L     T  +V  ++ ++A    ++ P
Sbjct: 33  DTEVLMSYVPPHTNVEPHQHKEV-QIGMVVSGEL---MMTVGDV--TRKMTALESAYIAP 86

Query: 155 RGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLF 190
             + H  +N  + + +A              P   F
Sbjct: 87  PHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYF 122

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Length = 116

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
            +   ++ F  G     H+H   S+   V++G+        + V   KVL+AG+ F +P 
Sbjct: 33  ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFH---VNVDGV--IKVLTAGDSFFVPP 86

Query: 156 GLIHFQQNVGEGKAL-AFT 173
            + H       G  +  F+
Sbjct: 87  HVDHGAVCPTGGILIDTFS 105

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV 152
           N L   +   +  PGG +    H   +   +++KG+   G            ++  ++  
Sbjct: 49  NGLTGELRYFEVGPGGHSTLERHQ-HAHGVMILKGR---GHAMVGRAVS--AVAPYDLVT 102

Query: 153 IPRGLIHFQQNVGE 166
           IP    H  +   +
Sbjct: 103 IPGWSWHQFRAPAD 116

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 98  SMNRVDFAPGGL--NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
               +  APG     P + H  A +   V+ G    G    +    ++ L AG +  I R
Sbjct: 22  QAAEMVIAPGDREGGPDNRHRGADQWLFVVDGA---GEAIVDGH--TQALQAGSLIAIER 76

Query: 156 GLIHFQQNVGEG--KALAFTAFNSHLPGAV 183
           G  H  +N G+   K + F    ++     
Sbjct: 77  GQAHEIRNTGDTPLKTVNFYHPPAYDAQGE 106

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Length = 110

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASE-SGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154
              +    F  G   P HSH    E + +V++G+   G F  +          G + V P
Sbjct: 32  NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGE---GEFVGDGDAV-IPAPRGAVLVAP 87

Query: 155 RGLIHFQQNVGEGKALAFTAF 175
               H  + V + K L   A 
Sbjct: 88  ISTPHGVRAVTDMKVLVTIAP 108

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Length = 190

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 96  GISMNRVDFAPGGLNPP------HSHPRA--SESGIVIKGKLLVGFFTTNNVFYSKVLSA 147
            ++       PG +         H H +   +E  + +KGK  +   T         +  
Sbjct: 66  DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEP 125

Query: 148 GEMFVIPRGLIHFQQNVGEGKALAFTAFNSH 178
           G +  +P    H   N+G+   +    + + 
Sbjct: 126 GTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKV-LSAGEMFVIP 154
            +        PG + P H H   S    +++GK   G FT  +    +  ++ G+  + P
Sbjct: 99  TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGK---GAFTAVD--GERTPMNEGDFILTP 152

Query: 155 RGLIHFQQNVGEGKALAFTAFNSHL 179
           +   H   N G+   +     +  L
Sbjct: 153 QWRWHDHGNPGDEPVIWLDGLDLPL 177

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Length = 147

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 7/115 (6%)

Query: 67  GLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIK 126
               +G++  F   V    +L           +  V F PG     HSHP   +  IV +
Sbjct: 19  ERGSKGSSDFFTGNVW-VKMLVTDENGVFNTQVYDVVFEPGARTHWHSHP-GGQILIVTR 76

Query: 127 GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG 181
           GK                   G++  IP  ++H+     + + L     ++ +  
Sbjct: 77  GKGFYQERGKPARIL----KKGDVVEIPPNVVHWHGAAPD-EELVHIGISTQVHL 126

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
           V    + M  + F  G    PH  P       V+ G+     +  +      ++  GE  
Sbjct: 148 VAKPNLVMTIMSFWKGESLDPHKAPGD-ALVTVLDGEGK---YYVDGK--PFIVKKGESA 201

Query: 152 VIPRGLIHFQQNVGEGKALAFT 173
           V+P  + H  +   E   +   
Sbjct: 202 VLPANIPHAVEAETENFKMLLI 223

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Length = 114

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
             +  + ++   FA G       +       ++++G+ +    T ++      L   ++ 
Sbjct: 33  AQSDRVQISLFSFADGESVSEEEYFGD-TLYLILQGEAV---ITFDDQKI--DLVPEDVL 86

Query: 152 VIPRGLIH 159
           ++P   IH
Sbjct: 87  MVPAHKIH 94

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Length = 163

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 97  ISMNRVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
             +N V   PG   +  H H    E  +V +G         +   +   +  G+    P 
Sbjct: 43  FGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGA---LVLVDDQGEH--PMVPGDCAAFPA 97

Query: 156 G--LIHFQQNVGEGKALAFTAFNSHLPGAVIV 185
           G    H   N  +     F    +  P     
Sbjct: 98  GDPNGHQFVNRTD-APATFLVVGTRTPTETAY 128

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 81  VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT-NNV 139
             P          T+  ++  +   P    P H H   +    V++G+   G +T  N  
Sbjct: 89  ANPGLGGNAYISPTMWAAIQYL--GPRETAPEHRHS-QNAFRFVVEGE---GVWTVVNGD 142

Query: 140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL 179
                +S G++ + P    H   N  +         +   
Sbjct: 143 PVR--MSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPF 180

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} Length = 175

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 22/86 (25%)

Query: 104 FAPGGLNPPHSHPRAS------ESGIVIKGKLLV----------------GFFTTNNVFY 141
             PG   P H HP         E+     GK+ +                       V++
Sbjct: 60  LFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWH 119

Query: 142 SKVLSAGEMFVIPRGLIHFQQNVGEG 167
              L  G  + IP    H+ Q   EG
Sbjct: 120 EIELEPGGQYTIPPNTKHWFQAGEEG 145

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Length = 261

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 21/115 (18%), Positives = 29/115 (25%), Gaps = 7/115 (6%)

Query: 56  AEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNP-PHS 114
           A V  G+F            I G     A +L+ P +         V     G N     
Sbjct: 19  AIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGA-SFVDYLVTLHQNGGNQQGFG 77

Query: 115 HPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA 169
                    VI G +           +   LS G     P G +    N     +
Sbjct: 78  GEGIETFLYVISGNITA---KAEGKTF--ALSEGGYLYCPPGSLMTFVNAQAEDS 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.96
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.96
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.96
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.96
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.95
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.95
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.95
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.95
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.95
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.94
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.94
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.93
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.93
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.91
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.91
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.89
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.88
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.88
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.88
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.88
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.87
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.86
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.86
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.85
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.85
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.84
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.83
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.82
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.82
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.8
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.78
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.64
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.63
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.59
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.57
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.57
1v70_A	105	Probable antibiotics synthesis protein; structural	99.56
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.55
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.54
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.54
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.53
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.53
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.51
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.51
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.48
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.48
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.48
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.48
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.47
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.46
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.46
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.45
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.45
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.44
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.43
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.42
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.42
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.41
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.41
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.4
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.4
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.39
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.38
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.36
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.35
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.34
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.33
1sef_A	274	Conserved hypothetical protein; structural genomic	99.32
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.31
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.28
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.27
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.25
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.25
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.25
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.25
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.25
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.24
1sef_A	274	Conserved hypothetical protein; structural genomic	99.21
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.21
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.2
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.2
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.19
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.18
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.18
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.17
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.15
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.14
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.13
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	99.12
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.12
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.1
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.07
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.04
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	99.03
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.03
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.99
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.97
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.92
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.86
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.82
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.82
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.79
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.79
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.77
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	98.74
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.73
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.73
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.71
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.59
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.58
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.53
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.51
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.48
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.46
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.41
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.34
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	98.33
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.3
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.12
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	98.03
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.96
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.8
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.71
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.69
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.52
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.51
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.2
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.17
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	97.08
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	96.97
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.97
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.94
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.91
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.72
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.69
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.64
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.56
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.4
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	96.39
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.23
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	96.22
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	96.19
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.08
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	95.99
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.94
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.93
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.59
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	95.54
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	95.48
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.42
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	95.31
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	95.19
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	94.87
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	94.56
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	93.88
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	93.71
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	93.43
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	93.4
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	92.99
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.92
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	92.86
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	92.85
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	92.8
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	92.8
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	92.67
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	92.67
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	92.3
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	92.2
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	91.93
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	91.88
3kv9_A	397	JMJC domain-containing histone demethylation prote	91.69
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	91.65
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	91.24
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	90.65
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	90.6
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	89.89
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	89.67
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	88.53
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	88.06
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	87.69
2ypd_A	392	Probable JMJC domain-containing histone demethyla	87.48
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	87.47
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	86.39
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	85.58
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	85.13
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	82.5
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	81.89
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	81.85
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	81.24

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=100.00  E-value=3.4e-49  Score=328.98  Aligned_cols=192  Identities=58%  Similarity=0.979  Sum_probs=183.8

Q ss_pred             cCCCCCcceeeccCCCC-cccCCcccCCCcccccCCeEEec-ccCCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEE
Q 027585           28 ADPDPLQDFCVADLKAS-ASLNGFPCKLAAEVTSGDFFFDG-LSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDF  104 (221)
Q Consensus        28 ~d~~~~~dfcva~~~~~-~~~~g~~ck~p~~~~~~df~~~~-l~~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l  104 (221)
                      +||||||||||||++++ +++||++|| |+.++++||+|++ +.+++++ +..|+.++.++..++|+++++++++.++++
T Consensus         1 ~~~~~~~d~c~~~~~~~~~~~~g~~c~-~~~~~~~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l   79 (201)
T 1fi2_A            1 TDPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDF   79 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBC-CGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEE
T ss_pred             CCCcccceeEEecCCCCcccccCcccc-cCcccccceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEE
Confidence            59999999999999988 999999999 9999999999998 9999887 889999999999999999999999999999


Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC---CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG  181 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg  181 (221)
                      .||+..++|||+++.|++||++|++++++.+.+   ++++++.|++||+++||+|.+|+++|.|++++++++++++++|+
T Consensus        80 ~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~  159 (201)
T 1fi2_A           80 APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPG  159 (201)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCC
T ss_pred             CCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCC
Confidence            999999999999888999999999999998665   67778999999999999999999999999999999999999999


Q ss_pred             eeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585          182 AVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG  220 (221)
Q Consensus       182 ~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~~  220 (221)
                      .+.++.++|+++|++++|+|+++|+++.+++++||++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~~  198 (201)
T 1fi2_A          160 IVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA  198 (201)
T ss_dssp             CEEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHST
T ss_pred             eEehhhHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhhc
Confidence            999999999998889999999999999999999999885

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.96  E-value=1e-29  Score=234.63  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=133.8

Q ss_pred             Cc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecCCcE
Q 027585           73 NT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSAGEM  150 (221)
Q Consensus        73 ~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~GDv  150 (221)
                      +. ++.||+++.+++.+||+|++++|++++++|.||++.+||||++|+|++||++|++++++.+++| +++..+|++||+
T Consensus       298 d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV  377 (466)
T 3kgl_A          298 DVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQL  377 (466)
T ss_dssp             EEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcE
Confidence            44 7889999999999999999999999999999999999999999999999999999999999864 678999999999


Q ss_pred             EEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          151 FVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       151 ~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      ++||+|.+|++ |.|++++.+++++++++|+...++  .++|++   +|++||+++|+++.+++++|+++
T Consensus       378 ~v~P~G~~H~~-~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~~---lP~eVla~aF~v~~~~v~~Lk~~  443 (466)
T 3kgl_A          378 LSIPQGFSVVK-RATSEQFRWIEFKTNANAQINTLAGRTSVLRG---LPLEVISNGYQISLEEARRVKFN  443 (466)
T ss_dssp             EEECTTCEEEE-EECSSEEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EEECCCCeEEE-EcCCCCEEEEEEECCCCCccccccchhhhhhh---CCHHHHHHHhCcCHHHHHHHHhc
Confidence            99999999998 778999999999999999999998  577886   99999999999999999999974

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.96  E-value=1.4e-28  Score=228.66  Aligned_cols=153  Identities=14%  Similarity=0.219  Sum_probs=136.8

Q ss_pred             CeEEeccc-CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-C
Q 027585           62 DFFFDGLS-KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-N  138 (221)
Q Consensus        62 df~~~~l~-~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~  138 (221)
                      .+.++... ...+. ++.||+++.+++.+||+|+++||++++++|.||++.+|||||+|+|++||++|++++++.+.+ +
T Consensus       321 ~l~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~  400 (496)
T 3ksc_A          321 KLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGN  400 (496)
T ss_dssp             CCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC
T ss_pred             hhhccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCc
Confidence            34565332 22344 788999999999999999999999999999999999999999999999999999999999986 4


Q ss_pred             eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +++..+|++||+++||+|.+|+..|. ++++.+++++++++|+...++  .++|+.   +|++||+++|++|.+++++|+
T Consensus       401 ~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~np~~~~LaG~~sv~~~---~p~eVLa~aF~v~~~~v~~Lk  476 (496)
T 3ksc_A          401 TVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTNDRAGIARLAGTSSVINN---LPLDVVAATFNLQRNEARQLK  476 (496)
T ss_dssp             EEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESSTTCCEEESSSTTCTTTT---SCHHHHHHHHTCCHHHHHHHH
T ss_pred             EEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCCCCccccccchhhhhhh---CCHHHHHHHHCcCHHHHHHHH
Confidence            67888999999999999999998774 788999999999999999887  568875   999999999999999999998


Q ss_pred             hh
Q 027585          217 SK  218 (221)
Q Consensus       217 ~~  218 (221)
                      +.
T Consensus       477 ~~  478 (496)
T 3ksc_A          477 SN  478 (496)
T ss_dssp             HS
T ss_pred             hc
Confidence            74

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.96  E-value=8.2e-29  Score=228.60  Aligned_cols=145  Identities=17%  Similarity=0.210  Sum_probs=134.8

Q ss_pred             CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecC
Q 027585           70 KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSA  147 (221)
Q Consensus        70 ~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~  147 (221)
                      ...+. ++.|++++.+++.+||+|+++|++++++++.||++.+|||||+|+|++||++|++++++.+++ ++++..+|++
T Consensus       295 ~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~  374 (465)
T 3qac_A          295 SKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSR  374 (465)
T ss_dssp             TTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecC
Confidence            34455 888999999999999999999999999999999999999999999999999999999999986 4788999999


Q ss_pred             CcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          148 GEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       148 GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      ||+++||+|.+|+.. .|++++.+++++++++|+.+.++  .++|+.   +|++||+++|++|.+++++|+++
T Consensus       375 GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s~np~~~~LaG~~sv~~~---ip~eVla~aF~v~~e~v~~Lk~~  443 (465)
T 3qac_A          375 GQLVVVPQNFAIVKQ-AFEDGFEWVSFKTSENAMFQSLAGRTSAIRS---LPIDVVSNIYQISREEAFGLKFN  443 (465)
T ss_dssp             TCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSSSBHHHH---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             CeEEEECCCcEEEEE-cCCCCeEEEEEecCCCCcccccccchhhhhh---CCHHHHHHHhCCCHHHHHHHHhc
Confidence            999999999999986 57889999999999999999997  678886   99999999999999999999875

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.96  E-value=1.6e-28  Score=227.04  Aligned_cols=153  Identities=11%  Similarity=0.167  Sum_probs=138.4

Q ss_pred             eEEeccc-CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-e
Q 027585           63 FFFDGLS-KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-V  139 (221)
Q Consensus        63 f~~~~l~-~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~  139 (221)
                      +.++... ..+++ ++.|++++.+++.+||+|++++++++++++.||++.+||||+++.|++||++|++++++++.+| +
T Consensus       286 l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~  365 (459)
T 2e9q_A          286 LKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQS  365 (459)
T ss_dssp             CEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE
T ss_pred             eeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCE
Confidence            4444332 44555 8899999999999999999999999999999999999999999999999999999999998764 6


Q ss_pred             EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       140 ~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                      ++..+|++||+++||+|.+|++.| |++++.+++++++++|+...++  .++|++   +|++||+++|+++.+++++|++
T Consensus       366 ~~~~~l~~GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~~~~~~~laG~~s~~~~---~p~~Vla~af~v~~~~v~~l~~  441 (459)
T 2e9q_A          366 VFDGEVREGQVLMIPQNFVVIKRA-SDRGFEWIAFKTNDNAITNLLAGRVSQMRM---LPLGVLSNMYRISREEAQRLKY  441 (459)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEEE-EEEEEEEEEEESSSSCCEEESSSSSSHHHH---SCHHHHHHHHTCCHHHHHHHHH
T ss_pred             EEeeEEeCCcEEEECCCCEEEEEe-CCCCeEEEEEecCCCCcceeecchhHHHHh---CCHHHHHHHHCcCHHHHHHHHh
Confidence            777889999999999999999999 7889999999999999999998  677886   9999999999999999999998


Q ss_pred             hh
Q 027585          218 KF  219 (221)
Q Consensus       218 ~~  219 (221)
                      ..
T Consensus       442 ~~  443 (459)
T 2e9q_A          442 GQ  443 (459)
T ss_dssp             SC
T ss_pred             cC
Confidence            63

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.95  E-value=3.3e-28  Score=226.46  Aligned_cols=153  Identities=18%  Similarity=0.259  Sum_probs=135.5

Q ss_pred             CeEEeccc-CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-
Q 027585           62 DFFFDGLS-KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-  138 (221)
Q Consensus        62 df~~~~l~-~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-  138 (221)
                      .+.|+... ...++ ++.|++++.+++.+||+|+++++++++++|.||++.+||||++++|++||++|++++++++++| 
T Consensus       357 rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~  436 (531)
T 3fz3_A          357 RLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGD  436 (531)
T ss_dssp             CCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC
T ss_pred             eeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCc
Confidence            34666432 33455 8889999999999999999999999999999999999999999999999999999999999864 


Q ss_pred             eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      ++++.+|++||+++||+|.+|+.. .+++.+.++++.++++|+...++  .++|++   +|++||+++|++|.+++++|+
T Consensus       437 ~v~~~~L~~GDV~v~P~G~~H~~~-ag~e~l~flaF~ss~np~~~~LaG~~svf~~---lP~eVLa~aF~v~~e~v~kLk  512 (531)
T 3fz3_A          437 AILDQEVQQGQLFIVPQNHGVIQQ-AGNQGFEYFAFKTEENAFINTLAGRTSFLRA---LPDEVLANAYQISREQARQLK  512 (531)
T ss_dssp             EEEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSTTCHHHH---SCHHHHHHHHTCCHHHHHHHH
T ss_pred             EEEEEEecCCeEEEECCCCeEEEe-cCCCCEEEEEEecCCCCcceeccchhHHHHh---CCHHHHHHHhCcCHHHHHHHH
Confidence            678999999999999999999765 46777888766677999999998  778886   999999999999999999999


Q ss_pred             hh
Q 027585          217 SK  218 (221)
Q Consensus       217 ~~  218 (221)
                      ++
T Consensus       513 ~~  514 (531)
T 3fz3_A          513 YN  514 (531)
T ss_dssp             HS
T ss_pred             hc
Confidence            85

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.95  E-value=4.5e-27  Score=219.27  Aligned_cols=146  Identities=15%  Similarity=0.247  Sum_probs=135.9

Q ss_pred             CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecC
Q 027585           70 KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSA  147 (221)
Q Consensus        70 ~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~  147 (221)
                      ..+++ ++.|++++.++..+||+|+++++++++++++||++.+||||+++.|++||++|++++++++++| +++..+|++
T Consensus       344 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~  423 (510)
T 3c3v_A          344 RSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQE  423 (510)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcC
Confidence            34556 8899999999999999999999999999999999999999999999999999999999998764 677788999


Q ss_pred             CcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhh
Q 027585          148 GEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF  219 (221)
Q Consensus       148 GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~  219 (221)
                      ||+++||+|.+|++.| +++++.+++++++++|+...++  .++|++   +|++||+++|+++.+++++|++.+
T Consensus       424 GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~~p~~~~LaG~~svf~~---lp~eVla~aF~v~~e~v~~L~~~~  493 (510)
T 3c3v_A          424 GHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPSIANLAGENSVIDN---LPEEVVANSYGLPREQARQLKNNN  493 (510)
T ss_dssp             TCEEEECTTCEEEEEE-CSSEEEEEEEESSSSCCEEESSSTTSTTTT---SCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             CcEEEECCCCeEEEEe-CCCCEEEEEEECCCCcceeecccHhHHHHh---CCHHHHHHHHCcCHHHHHHHHhhC
Confidence            9999999999999999 8889999999988999999998  788886   999999999999999999999865

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.95  E-value=6.6e-27  Score=217.14  Aligned_cols=146  Identities=17%  Similarity=0.286  Sum_probs=135.6

Q ss_pred             CCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecC
Q 027585           70 KEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSA  147 (221)
Q Consensus        70 ~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~  147 (221)
                      ..+++ ++.|++++.++..+||+++++++++++++++||++.+||||+++.|++||++|++++++++++| +.+..+|++
T Consensus       310 ~~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~  389 (476)
T 1fxz_A          310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE  389 (476)
T ss_dssp             SCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcC
Confidence            34456 8899999999999999999999999999999999999999999999999999999999998764 667788999


Q ss_pred             CcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhh
Q 027585          148 GEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF  219 (221)
Q Consensus       148 GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~  219 (221)
                      ||+++||+|.+|++.| |++++.+++++++++|+...++  .++|++   +|++||+++|++|.+++++|++.+
T Consensus       390 GDv~viP~G~~H~~~n-g~~~l~~l~f~~s~~p~~~~laG~~s~~~~---~p~~Vla~af~~~~~~v~~l~~~~  459 (476)
T 1fxz_A          390 GRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTLAGANSLLNA---LPEEVIQHTFNLKSQQARQIKNNN  459 (476)
T ss_dssp             TCEEEECTTCEEEEEE-CSTTEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             CCEEEECCCCeEEEEe-CCCCEEEEEEECCCCCceeEccchhHHHHh---CCHHHHHHHhCcCHHHHHHHHhhC
Confidence            9999999999999999 8899999999988999999997  788886   999999999999999999999865

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.95  E-value=3.4e-27  Score=217.57  Aligned_cols=155  Identities=18%  Similarity=0.180  Sum_probs=135.2

Q ss_pred             ccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC
Q 027585           59 TSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN  138 (221)
Q Consensus        59 ~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~  138 (221)
                      ....+.|+.+.++...++.|++++.+++.+||+|+++|++++++++.||++.+||||+++.|++||++|++++++.++++
T Consensus       243 ~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~  322 (445)
T 2cav_A          243 SSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ  322 (445)
T ss_dssp             ---CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC--
T ss_pred             CCcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCC
Confidence            34567888666554447888899999999999999999999999999999999999999999999999999999998863


Q ss_pred             ---------e--EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE-cCCCCeeeecc---chhhcCCCCCCHHHHHh
Q 027585          139 ---------V--FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF-NSHLPGAVIVP---TTLFASTPSVPNQVLTK  203 (221)
Q Consensus       139 ---------~--~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~-~s~~pg~~~~~---~~lf~~~p~~~~~vla~  203 (221)
                               +  +++.+|++||+++||+|.+|++.|.  +++.++++. ++++|+.+.++   .++|++   +|++||++
T Consensus       323 ~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~---~p~~vla~  397 (445)
T 2cav_A          323 QQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQ---IPRQVSDL  397 (445)
T ss_dssp             ---------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEESCTTCCEEESSSSTTBSGGG---SCHHHHHH
T ss_pred             cccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEccCCCCCcEEcccchhhhhhh---CCHHHHHH
Confidence                     3  6899999999999999999999998  467777766 45689999998   688886   99999999


Q ss_pred             hcCCCHHHHHHHHhh
Q 027585          204 TFQVDDDLISTIKSK  218 (221)
Q Consensus       204 ~f~l~~~~v~~l~~~  218 (221)
                      +|++|.+++++|++.
T Consensus       398 af~v~~~~v~~l~~~  412 (445)
T 2cav_A          398 TFPGSGEEVEELLEN  412 (445)
T ss_dssp             HSSSCHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHhc
Confidence            999999999999875

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.95  E-value=5.1e-27  Score=214.89  Aligned_cols=156  Identities=17%  Similarity=0.139  Sum_probs=138.0

Q ss_pred             cccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC
Q 027585           58 VTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN  137 (221)
Q Consensus        58 ~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~  137 (221)
                      .....+.|+.+..+......+|+++.+++.+||+|++++++++++++.||++.+||||+++.|++||++|++++++.+++
T Consensus       210 ~~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~  289 (416)
T 1uij_A          210 ISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIK  289 (416)
T ss_dssp             GGCSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC
T ss_pred             CCCcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCC
Confidence            34567888866554444667779999999999999999999999999999999999999999999999999999999986


Q ss_pred             C--------------eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC-CCCeeeecc---chhhcCCCCCCHH
Q 027585          138 N--------------VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS-HLPGAVIVP---TTLFASTPSVPNQ  199 (221)
Q Consensus       138 ~--------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s-~~pg~~~~~---~~lf~~~p~~~~~  199 (221)
                      |              +.+..+|++||+++||+|.+|++.|.  +++.+++++++ ++|+...++   .++|+.   +|++
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~---~p~~  364 (416)
T 1uij_A          290 EQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQ---IERQ  364 (416)
T ss_dssp             ------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGG---SCHH
T ss_pred             CccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHHh---CCHH
Confidence            6              46777999999999999999999998  57999998855 599999887   678886   9999


Q ss_pred             HHHhhcCCCHHHHHHHHhh
Q 027585          200 VLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       200 vla~~f~l~~~~v~~l~~~  218 (221)
                      ||+++|+++.+++++|++.
T Consensus       365 vla~af~~~~~~v~~l~~~  383 (416)
T 1uij_A          365 VQELAFPGSAQDVERLLKK  383 (416)
T ss_dssp             HHHHHSSSCHHHHHHHTTS
T ss_pred             HHHHHHCcCHHHHHHHHhc
Confidence            9999999999999999874

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.94  E-value=1.2e-26  Score=213.41  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=137.7

Q ss_pred             cccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC
Q 027585           58 VTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN  137 (221)
Q Consensus        58 ~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~  137 (221)
                      .....+.|+...++......|++++.+++.+||+|++++++++++++.||++.+||||+++.|++||++|++++++++++
T Consensus       227 ~~~~~~~~~l~~~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~  306 (434)
T 2ea7_A          227 LSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLS  306 (434)
T ss_dssp             TTCSSSCEETTSSCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEE
T ss_pred             CCCcccceeeccCCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecC
Confidence            34556788866555444778889999999999999999999999999999999999999999999999999999999875


Q ss_pred             C-------------eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc-CCCCeeeecc---chhhcCCCCCCHHH
Q 027585          138 N-------------VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN-SHLPGAVIVP---TTLFASTPSVPNQV  200 (221)
Q Consensus       138 ~-------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~-s~~pg~~~~~---~~lf~~~p~~~~~v  200 (221)
                      |             +.+..+|++||+++||+|.+|++.|.  +++.+++++. +++++...++   .++|++   +|++|
T Consensus       307 g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~---~p~~v  381 (434)
T 2ea7_A          307 DQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSE---IPTEV  381 (434)
T ss_dssp             ECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGGG---SCHHH
T ss_pred             ccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhhh---CCHHH
Confidence            4             26677999999999999999999998  5788888774 4589999888   678886   99999


Q ss_pred             HHhhcCCCHHHHHHHHhh
Q 027585          201 LTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       201 la~~f~l~~~~v~~l~~~  218 (221)
                      |+++|+++.+++++|++.
T Consensus       382 la~af~v~~~~v~~l~~~  399 (434)
T 2ea7_A          382 LEVSFPASGKKVEKLIKK  399 (434)
T ss_dssp             HHHHSSSCHHHHHHHHTT
T ss_pred             HHHHHCcCHHHHHHHHhc
Confidence            999999999999999874

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.93  E-value=1.2e-25  Score=183.68  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=124.2

Q ss_pred             CCeEEecccCCCCcccCCeeEEEeec-----cccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585           61 GDFFFDGLSKEGNTTIFGSAVTPANV-----LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT  135 (221)
Q Consensus        61 ~df~~~~l~~~~~~~~~g~~v~~~~~-----~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~  135 (221)
                      +.|+|+...........||+++.++.     ..+|+++  ++++.+++++||+..++| |++++|++||++|++++++++
T Consensus         2 ~p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~   78 (178)
T 1dgw_A            2 NPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVN   78 (178)
T ss_dssp             CTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEE
T ss_pred             CCceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEe
Confidence            35778744332222788999999877     6788877  489999999999999999 988899999999999999986


Q ss_pred             cCCeEEEEEecCCcEEEECCCCeEEEEecCCc-cEEEEEEE-cCCCCeeee---cc-----chhhcCCCCCCHHHHHhhc
Q 027585          136 TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAF-NSHLPGAVI---VP-----TTLFASTPSVPNQVLTKTF  205 (221)
Q Consensus       136 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~-~a~~l~~~-~s~~pg~~~---~~-----~~lf~~~p~~~~~vla~~f  205 (221)
                      ++|. .++.|++||+++||+|.+|+++|.|++ ++++++++ ++++||.+.   ++     .++|+.   +|+|||+++|
T Consensus        79 ~~~~-~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~---~p~~vla~af  154 (178)
T 1dgw_A           79 PDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASY  154 (178)
T ss_dssp             TTEE-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHH
T ss_pred             CCCc-EEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhh---CCHHHHHHHH
Confidence            5432 388999999999999999999999986 78888875 556787433   22     467775   9999999999


Q ss_pred             CCCHHHHHHHHh
Q 027585          206 QVDDDLISTIKS  217 (221)
Q Consensus       206 ~l~~~~v~~l~~  217 (221)
                      ++|++++++|+.
T Consensus       155 ~v~~~~~~~l~~  166 (178)
T 1dgw_A          155 DSPYDEIEQTLL  166 (178)
T ss_dssp             TSCHHHHHHHTT
T ss_pred             CcCHHHHHHHhc
Confidence            999999999984

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.93  E-value=7.7e-26  Score=206.94  Aligned_cols=153  Identities=13%  Similarity=0.118  Sum_probs=134.0

Q ss_pred             CCeEEecccCCCCcccCCeeEEEeecccc-CCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-
Q 027585           61 GDFFFDGLSKEGNTTIFGSAVTPANVLAF-PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-  138 (221)
Q Consensus        61 ~df~~~~l~~~~~~~~~g~~v~~~~~~~f-P~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-  138 (221)
                      ..+.|+...+++...+.+|+++.+++.+| |+|+++|++++++++.||++.+||||+++.|++||++|++++++.++++ 
T Consensus       226 ~~~~~nl~~~~p~~~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~  305 (418)
T 3s7i_A          226 ITNPINLREGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKE  305 (418)
T ss_dssp             CCCCEETTCSCCSEEETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC
T ss_pred             CCcccccccCCCceeCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCc
Confidence            37888876655544666778899999999 9999999999999999999999999999999999999999999998654 


Q ss_pred             ------------------------eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE-cCCCCeeeeccc---hhh
Q 027585          139 ------------------------VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF-NSHLPGAVIVPT---TLF  190 (221)
Q Consensus       139 ------------------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~-~s~~pg~~~~~~---~lf  190 (221)
                                              +.+...|++||+++||+|.+|++.|.+  +++++++. ++++|+.+.++.   ++|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv~  383 (418)
T 3s7i_A          306 QQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNVI  383 (418)
T ss_dssp             -------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBHH
T ss_pred             cccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhhh
Confidence                                    567899999999999999999999854  47777654 456899999885   678


Q ss_pred             cCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          191 ASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       191 ~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      +.   +|+++|+++|++|.+++++|++.
T Consensus       384 ~~---~~~evla~af~v~~~~v~~L~~~  408 (418)
T 3s7i_A          384 DQ---IEKQAKDLAFPGSGEQVEKLIKN  408 (418)
T ss_dssp             HH---SCHHHHHHHSSSCHHHHHHHHHT
T ss_pred             hc---CCHHHHHHHhCCCHHHHHHHHhc
Confidence            85   99999999999999999999874

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.91  E-value=9.5e-24  Score=188.37  Aligned_cols=159  Identities=22%  Similarity=0.295  Sum_probs=141.3

Q ss_pred             CcccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE
Q 027585           55 AAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF  134 (221)
Q Consensus        55 p~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~  134 (221)
                      +.....++|+|+.+..++..+..|+.++.+....+|++++  +++.+++++||+..++|||+++.|++||++|++++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~  271 (361)
T 2vqa_A          194 QTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSFN--MTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF  271 (361)
T ss_dssp             CCCBCCSCCEEECTTSCCSEEETTEEEEEECTTTCTTSTT--CEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEE
T ss_pred             cCCCCCcceEeccccCCCcccCCCceEEEEehhhCcCccc--ceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEE
Confidence            4456788999998776653377899999999999998774  67889999999999999999889999999999999997


Q ss_pred             ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 027585          135 TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLIST  214 (221)
Q Consensus       135 ~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~  214 (221)
                      +.+|+..++.|++||++++|+|.+|++.|.|++++++++++++++++...++.++ +.   +|++||+++|+++++++++
T Consensus       272 ~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~~~~vl~~~f~~~~~~~~~  347 (361)
T 2vqa_A          272 ASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWL-AS---NPSSVLGNTFQISPELTKK  347 (361)
T ss_dssp             CSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHHHHH-HT---SCHHHHHHHHTCCHHHHTT
T ss_pred             cCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHHHHh-hh---CCHHHHHHHHCcCHHHHHh
Confidence            7667666899999999999999999999999999999999999999999998765 54   9999999999999999999


Q ss_pred             HHhhh
Q 027585          215 IKSKF  219 (221)
Q Consensus       215 l~~~~  219 (221)
                      ||+..
T Consensus       348 l~~~~  352 (361)
T 2vqa_A          348 LPVQD  352 (361)
T ss_dssp             SCCSC
T ss_pred             hhccC
Confidence            98754

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.91  E-value=6.8e-24  Score=192.93  Aligned_cols=141  Identities=21%  Similarity=0.183  Sum_probs=122.0

Q ss_pred             ccCCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec------CC-e
Q 027585           68 LSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT------NN-V  139 (221)
Q Consensus        68 l~~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~------~~-~  139 (221)
                      +....+. ...+|+++.+++.+      ++++++++++.||++.+||||+++.|+.||++|+++++++++      ++ +
T Consensus       215 l~~~~p~~~n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~  288 (397)
T 2phl_A          215 LSKQDNTIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYE  288 (397)
T ss_dssp             -----CEEEETTEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEE
T ss_pred             ccccCCcccCCCCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCce
Confidence            3333344 67788899999877      789999999999999999999999999999999999999987      44 8


Q ss_pred             EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc-CCCCeeeecc---chhhcCCCCCC-----HHHHHhhcCCCHH
Q 027585          140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN-SHLPGAVIVP---TTLFASTPSVP-----NQVLTKTFQVDDD  210 (221)
Q Consensus       140 ~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~-s~~pg~~~~~---~~lf~~~p~~~-----~~vla~~f~l~~~  210 (221)
                      +++.+|++||+++||+|.+|++.|.+  ++.++++.+ +++|+.+.++   .++|++   +|     ++||+++|+++++
T Consensus       289 ~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~~---~p~~~~~~eVla~af~v~~~  363 (397)
T 2phl_A          289 SYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISS---IGRALDGKDVLGLTFSGSGD  363 (397)
T ss_dssp             EEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHH---HHTSTTHHHHHHHHSSSCHH
T ss_pred             EEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHhh---CCCccchHHHHHHHhCcCHH
Confidence            89999999999999999999999985  788888665 4589998888   788887   66     9999999999999


Q ss_pred             HHHHHHhhh
Q 027585          211 LISTIKSKF  219 (221)
Q Consensus       211 ~v~~l~~~~  219 (221)
                      ++++|++..
T Consensus       364 ~v~~l~~~~  372 (397)
T 2phl_A          364 EVMKLINKQ  372 (397)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999999864

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.89  E-value=9.4e-23  Score=187.97  Aligned_cols=153  Identities=12%  Similarity=0.130  Sum_probs=125.0

Q ss_pred             cCCeEEecccCCCCcccCCeeEEEeec--cccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec
Q 027585           60 SGDFFFDGLSKEGNTTIFGSAVTPANV--LAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT  136 (221)
Q Consensus        60 ~~df~~~~l~~~~~~~~~g~~v~~~~~--~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~  136 (221)
                      .+.|+|+...........++.+..++.  ...|.+++++ +++++++++||+..++| |++++|++||++|++++++.++
T Consensus        46 ~~p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~  124 (445)
T 2cav_A           46 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP  124 (445)
T ss_dssp             CCTTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCCeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeC
Confidence            455777733221112456888888654  4556888877 99999999999999999 7778999999999999999876


Q ss_pred             CCeEEEEEecCCcEEEECCCCeEEEEecC-CccEEEEEEEc-CCCCee---eecc-----chhhcCCCCCCHHHHHhhcC
Q 027585          137 NNVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKALAFTAFN-SHLPGA---VIVP-----TTLFASTPSVPNQVLTKTFQ  206 (221)
Q Consensus       137 ~~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~-----~~lf~~~p~~~~~vla~~f~  206 (221)
                      +++ +++.|++||++++|+|..|+++|.| +++++++++++ +++|+.   +.++     .++|+.   +|++||+++|+
T Consensus       125 ~~~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~---~~~~vLa~af~  200 (445)
T 2cav_A          125 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASYD  200 (445)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHHT
T ss_pred             CCC-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhc---CCHHHHHHHhC
Confidence            554 6899999999999999999999998 89999999987 556763   3344     367775   99999999999


Q ss_pred             CCHHHHHHHHh
Q 027585          207 VDDDLISTIKS  217 (221)
Q Consensus       207 l~~~~v~~l~~  217 (221)
                      +|.+++++|++
T Consensus       201 v~~~~v~~l~~  211 (445)
T 2cav_A          201 SPYDEIEQTLL  211 (445)
T ss_dssp             SCHHHHHHHTT
T ss_pred             CCHHHHHhhhc
Confidence            99999999984

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.88  E-value=1e-22  Score=186.30  Aligned_cols=152  Identities=15%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             cCCeEEecccCCCCc-ccCCeeEEEeec--cccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585           60 SGDFFFDGLSKEGNT-TIFGSAVTPANV--LAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT  135 (221)
Q Consensus        60 ~~df~~~~l~~~~~~-~~~g~~v~~~~~--~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~  135 (221)
                      .+.|+|+-....... ...||.++.+..  ...+.+++.+ +++++++++||+..+|| |++++|++||++|++++++.+
T Consensus         8 ~~p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~   86 (416)
T 1uij_A            8 NNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVN   86 (416)
T ss_dssp             SCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEEC
T ss_pred             CCCeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEE
Confidence            356777722222233 667888888633  3447788887 99999999999999999 778899999999999999987


Q ss_pred             cCCeEEEEEecCCcEEEECCCCeEEEEecC-CccEEEEEEEc-CCCCee---eeccc-----hhhcCCCCCCHHHHHhhc
Q 027585          136 TNNVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKALAFTAFN-SHLPGA---VIVPT-----TLFASTPSVPNQVLTKTF  205 (221)
Q Consensus       136 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~~-----~lf~~~p~~~~~vla~~f  205 (221)
                      + |+.+++.+++||+++||+|..|+++|.| ++++++++++. +++|+.   +.++.     ++|+.   +|++||+++|
T Consensus        87 ~-~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~---~~~~vLa~af  162 (416)
T 1uij_A           87 N-DDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQG---FSHNILETSF  162 (416)
T ss_dssp             S-SCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGG---SCHHHHHHHH
T ss_pred             C-CCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhc---CCHHHHHHHh
Confidence            6 5556899999999999999999999995 99999999985 566653   34443     36675   9999999999


Q ss_pred             CCCHHHHHHHH
Q 027585          206 QVDDDLISTIK  216 (221)
Q Consensus       206 ~l~~~~v~~l~  216 (221)
                      ++|.+++++|+
T Consensus       163 ~v~~~~v~~l~  173 (416)
T 1uij_A          163 HSEFEEINRVL  173 (416)
T ss_dssp             TSCHHHHHHHH
T ss_pred             CcCHHHHHhhh
Confidence            99999999998

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.88  E-value=8.2e-23  Score=188.88  Aligned_cols=140  Identities=18%  Similarity=0.264  Sum_probs=119.8

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-E-------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-F-------------  140 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~-------------  140 (221)
                      ...+|.+..++ ...|+|+++|+++++++++||+..+||||+ +.|++||++|+++++++.++++ .             
T Consensus        42 ~se~G~~~~~~-~~~~~l~~~gvs~~r~~i~pggl~~Ph~h~-a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~  119 (459)
T 2e9q_A           42 EAEAGFTEVWD-QDNDEFQCAGVNMIRHTIRPKGLLLPGFSN-APKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGS  119 (459)
T ss_dssp             EETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEEECCC-------
T ss_pred             ecCCcEEEecC-CCChhhccCceEEEEEEEcCCCEecceecC-CceEEEEEeeEEEEEEEeCCCcchhccchhhcccccc
Confidence            56677776655 456999999999999999999999999997 6999999999999999976532 1             


Q ss_pred             -------EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC--------Ceeeecc-------------------
Q 027585          141 -------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL--------PGAVIVP-------------------  186 (221)
Q Consensus       141 -------~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~-------------------  186 (221)
                             ..+.|++||+++||+|++||++|.|++++++++++++.+        +..+.++                   
T Consensus       120 ~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~  199 (459)
T 2e9q_A          120 AFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRK  199 (459)
T ss_dssp             CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC-------
T ss_pred             ccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhcccccccc
Confidence                   257999999999999999999999999999999998665        3344444                   


Q ss_pred             -------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhh
Q 027585          187 -------TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF  219 (221)
Q Consensus       187 -------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~  219 (221)
                             .++|+.   +|+++|+++|++|.++++||++..
T Consensus       200 ~~~~~~~~nif~g---f~~evLa~aF~v~~~~v~kL~~~~  236 (459)
T 2e9q_A          200 GSSGEKSGNIFSG---FADEFLEEAFQIDGGLVRKLKGED  236 (459)
T ss_dssp             -----CCCCTTTT---SCHHHHHHHHTCCHHHHHHHHTTT
T ss_pred             ccccccccchhhc---CCHHHHHhhcCCCHHHHHhhhhcc
Confidence                   378885   999999999999999999999754

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.88  E-value=2.4e-22  Score=184.76  Aligned_cols=152  Identities=16%  Similarity=0.176  Sum_probs=124.7

Q ss_pred             cCCeEEecccCCCCc-ccCCeeEEEeec--cccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585           60 SGDFFFDGLSKEGNT-TIFGSAVTPANV--LAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT  135 (221)
Q Consensus        60 ~~df~~~~l~~~~~~-~~~g~~v~~~~~--~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~  135 (221)
                      .+.|.|+...--... ...+|.++.+..  .+.|.+++.+ +++++++++||+..+|| |++++|++||++|++++++.+
T Consensus        20 ~~p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~   98 (434)
T 2ea7_A           20 NNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVN   98 (434)
T ss_dssp             GCTTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEEC
T ss_pred             CCCeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEe
Confidence            356777722201123 567888888643  5567888888 99999999999999999 888899999999999999987


Q ss_pred             cCCeEEEEEecCCcEEEECCCCeEEEEecC-CccEEEEEEEc-CCCCee---eeccc-----hhhcCCCCCCHHHHHhhc
Q 027585          136 TNNVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKALAFTAFN-SHLPGA---VIVPT-----TLFASTPSVPNQVLTKTF  205 (221)
Q Consensus       136 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~~l~~~~-s~~pg~---~~~~~-----~lf~~~p~~~~~vla~~f  205 (221)
                      + ++.+++.|++||++++|+|..||++|.| ++++++++++. +++|+.   +.++.     ++|+.   +|++||+++|
T Consensus        99 ~-~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~---~~~~vLa~af  174 (434)
T 2ea7_A           99 P-DSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRG---FSKNILEASF  174 (434)
T ss_dssp             S-SCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGG---SCHHHHHHHH
T ss_pred             C-CCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhc---CCHHHHHHHh
Confidence            4 4567899999999999999999999998 88999999874 566653   34443     36675   9999999999


Q ss_pred             CCCHHHHHHHH
Q 027585          206 QVDDDLISTIK  216 (221)
Q Consensus       206 ~l~~~~v~~l~  216 (221)
                      ++|.+++++|+
T Consensus       175 ~v~~~~v~~l~  185 (434)
T 2ea7_A          175 DSDFKEINRVL  185 (434)
T ss_dssp             TSCHHHHHHHH
T ss_pred             CCCHHHHHhhh
Confidence            99999999998

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.88  E-value=2.6e-22  Score=182.53  Aligned_cols=152  Identities=12%  Similarity=0.119  Sum_probs=125.9

Q ss_pred             cCCeEEecccCCCCc-ccCCeeEEEe--eccccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585           60 SGDFFFDGLSKEGNT-TIFGSAVTPA--NVLAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT  135 (221)
Q Consensus        60 ~~df~~~~l~~~~~~-~~~g~~v~~~--~~~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~  135 (221)
                      .+.|+|.....-.+. ...+|.++.+  .....|++++++ +++++++++||+..+|||| +++|++||++|++++++++
T Consensus        11 ~~p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~   89 (397)
T 2phl_A           11 DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVK   89 (397)
T ss_dssp             CCTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEE
T ss_pred             CCCcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEe
Confidence            456777733201133 7888999887  445668999988 9999999999999999999 5799999999999999998


Q ss_pred             cCCeEEEEEecCCcE------EEECCCCeEEEEecC-CccEEEEEEEcCCC-C--eeeecc-----chhhcCCCCCCHHH
Q 027585          136 TNNVFYSKVLSAGEM------FVIPRGLIHFQQNVG-EGKALAFTAFNSHL-P--GAVIVP-----TTLFASTPSVPNQV  200 (221)
Q Consensus       136 ~~~~~~~~~L~~GDv------~~~P~g~~H~~~N~g-~~~a~~l~~~~s~~-p--g~~~~~-----~~lf~~~p~~~~~v  200 (221)
                      ++++ +++.|++||+      ++||+|.+||++|.| ++++++++++.+.+ |  ..+.++     .++|+.   +|++|
T Consensus        90 ~~~~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~---~~~~v  165 (397)
T 2phl_A           90 PDDR-REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQE---FSKHI  165 (397)
T ss_dssp             TTTE-EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGG---SCHHH
T ss_pred             CCCc-EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhhc---CCHHH
Confidence            7666 5899999999      999999999999999 78999999986443 3  334443     246675   99999


Q ss_pred             HHhhcCCCHHHHHHHH
Q 027585          201 LTKTFQVDDDLISTIK  216 (221)
Q Consensus       201 la~~f~l~~~~v~~l~  216 (221)
                      |+++|++|.+++++|+
T Consensus       166 La~af~v~~~~v~~l~  181 (397)
T 2phl_A          166 LEASFNSKFEEINRVL  181 (397)
T ss_dssp             HHHHHTSCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHhhh
Confidence            9999999999999999

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.87  E-value=3.2e-22  Score=185.75  Aligned_cols=140  Identities=13%  Similarity=0.239  Sum_probs=119.6

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE--------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF--------------  140 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~--------------  140 (221)
                      ...+|.+..++. ..|+++++|+++++++++||+..+||||+ +.|++||++|++.++++.++++.              
T Consensus        27 ~se~G~~e~~~~-~~~~l~~~gvs~~r~~l~Pggl~~Ph~~~-a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (476)
T 1fxz_A           27 ESEGGLIETWNP-NNKPFQCAGVALSRCTLNRNALRRPSYTN-GPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS  104 (476)
T ss_dssp             EETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEEES-SCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ecCCceEEeeCC-CChhhccCceEEEEEEEcCCCEecceecC-CceEEEEEecEEEEEEEcCCCcchhhccccccccccc
Confidence            567777777664 44899999999999999999999999998 69999999999999999865431              


Q ss_pred             --------EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCC--------eeeecc------------------
Q 027585          141 --------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLP--------GAVIVP------------------  186 (221)
Q Consensus       141 --------~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~------------------  186 (221)
                              ..+.|++||+++||+|++||++|.|+++++++++++..++        ..+.++                  
T Consensus       105 ~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~  184 (476)
T 1fxz_A          105 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  184 (476)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCcccccccccccccccc
Confidence                    2689999999999999999999999999999999985553        344443                  


Q ss_pred             --------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhh
Q 027585          187 --------------TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF  219 (221)
Q Consensus       187 --------------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~  219 (221)
                                    .++|+.   +++++|+++|++|.++++||++..
T Consensus       185 ~~~~~~~~~~~~~~~~if~g---f~~~vLa~af~v~~~~~~kl~~~~  228 (476)
T 1fxz_A          185 SQKGKHQQEEENEGGSILSG---FTLEFLEHAFSVDKQIAKNLQGEN  228 (476)
T ss_dssp             -------------CCCGGGG---SCHHHHHHHHTCCHHHHHHHSCC-
T ss_pred             ccccccccccccccchhhhc---CCHHHHHhhhCCCHHHHHhhhccc
Confidence                          368885   999999999999999999998653

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.86  E-value=1.1e-21  Score=181.00  Aligned_cols=139  Identities=19%  Similarity=0.340  Sum_probs=120.2

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEE------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFY------------  141 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~------------  141 (221)
                      ...||.+..++..+ +.++++|++++|++++||+..+|||| ++.|++||++|++++++..++ ++.+            
T Consensus        29 ~se~G~~e~~d~~~-~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~  106 (465)
T 3qac_A           29 QAERGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGED  106 (465)
T ss_dssp             EETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC------------
T ss_pred             eCCCcEEEEECCCC-hhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhccccccc
Confidence            57788899888655 57888999999999999999999999 789999999999999998653 2322            


Q ss_pred             ------------------------EEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC---------Ceeeecc--
Q 027585          142 ------------------------SKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL---------PGAVIVP--  186 (221)
Q Consensus       142 ------------------------~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~---------pg~~~~~--  186 (221)
                                              .+.+++||++++|+|+.||++|.|++++++++++++.|         +..+.++  
T Consensus       107 ~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~  186 (465)
T 3qac_A          107 ERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGK  186 (465)
T ss_dssp             ------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSC
T ss_pred             cccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCC
Confidence                                    46899999999999999999999999999999998754         4445554  


Q ss_pred             ----------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          187 ----------------------TTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       187 ----------------------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                                            .++|+.   +++++|+++|+++.++++||++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~ni~sg---F~~e~La~Af~v~~~~~~kl~~~  237 (465)
T 3qac_A          187 PQQEHSGEHQFSRESRRGERNTGNIFRG---FETRLLAESFGVSEEIAQKLQAE  237 (465)
T ss_dssp             CCCSCC--------------CCCCGGGG---SCHHHHHHHHTCCHHHHHHHHTT
T ss_pred             Cccccccccccccccccccccccchhhc---CCHHHHHHHhCCCHHHHHHhhhc
Confidence                                  368885   99999999999999999999753

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.86  E-value=1.9e-21  Score=177.92  Aligned_cols=135  Identities=16%  Similarity=0.221  Sum_probs=113.2

Q ss_pred             ccCCeeEEEee-----ccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCc
Q 027585           75 TIFGSAVTPAN-----VLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE  149 (221)
Q Consensus        75 ~~~g~~v~~~~-----~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GD  149 (221)
                      ...+|.++.+.     ...+|+|++  +.+++++++|++..+|| |++++|++||++|+++++++++ |+.+.+.|++||
T Consensus        19 ~se~G~i~~l~~f~~~s~~l~~l~~--~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~~-~~~~~~~l~~GD   94 (418)
T 3s7i_A           19 GNQNGRIRVLQRFDQRSRQFQNLQN--HRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVANG-NNRKSFNLDEGH   94 (418)
T ss_dssp             ECSSEEEEEECCHHHHCGGGGGGTT--CEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECS-SCEEEEEEETTE
T ss_pred             EcCCcEEEEecccCCcchhcccccc--eEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEec-CCEEEEEecCCC
Confidence            67788888874     357888885  56778899999999999 8999999999999999999987 455689999999


Q ss_pred             EEEECCCCeEEEEecCCc-cEEEEEE-EcCCCCeeeec--------cchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          150 MFVIPRGLIHFQQNVGEG-KALAFTA-FNSHLPGAVIV--------PTTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       150 v~~~P~g~~H~~~N~g~~-~a~~l~~-~~s~~pg~~~~--------~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +++||+|.+||++|.|+. .++++++ .++++||.+..        ..++|+.   +|+|||+++|+++.+++++|+
T Consensus        95 v~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~g---f~~evLa~af~v~~~~v~kl~  168 (418)
T 3s7i_A           95 ALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQG---FSRNTLEAAFNAEFNEIRRVL  168 (418)
T ss_dssp             EEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGG---SCHHHHHHHHTSCHHHHHHHT
T ss_pred             EEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhc---CCHHHHHHHHCcCHHHHHhhh
Confidence            999999999999998754 5666653 56677875433        1357775   999999999999999999997

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.85  E-value=2.8e-21  Score=179.57  Aligned_cols=137  Identities=13%  Similarity=0.293  Sum_probs=117.6

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEE------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFY------------  141 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~------------  141 (221)
                      ...||.+..++ ...|+|+++|++++++++.||++.+||+| ++.|++||++|++.++++.++ ++.+            
T Consensus        25 ~se~G~~e~~~-~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~  102 (496)
T 3ksc_A           25 ESEGGLIETWN-PNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGR  102 (496)
T ss_dssp             EETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             CCCCcEEEecc-ccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhhhccccccc
Confidence            45677666665 67899999999999999999999999999 789999999999999998764 3333            


Q ss_pred             --------EEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe--------eeecc-------------------
Q 027585          142 --------SKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG--------AVIVP-------------------  186 (221)
Q Consensus       142 --------~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~-------------------  186 (221)
                              .+.|++||+|+||+|++||++|.|++++++++++...++.        .+.++                   
T Consensus       103 ~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~~~~~~~~  182 (496)
T 3ksc_A          103 RYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQE  182 (496)
T ss_dssp             --CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC-------
T ss_pred             ccccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCcccccccccccccccc
Confidence                    4599999999999999999999999999999999766542        23332                   


Q ss_pred             -----chhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          187 -----TTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       187 -----~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                           .++|+.   ++.++|+.||+++.++++||.
T Consensus       183 ~~~~~~ni~sg---F~~e~La~Af~v~~e~~~kl~  214 (496)
T 3ksc_A          183 QENEGNNIFSG---FKRDFLEDAFNVNRHIVDRLQ  214 (496)
T ss_dssp             ----CCSGGGG---SCHHHHHHHHTCCHHHHHHHT
T ss_pred             ccccCCCchhh---cCHHHHHHHHCCCHHHHHHHH
Confidence                 468885   999999999999999999998

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.85  E-value=1.9e-20  Score=167.01  Aligned_cols=149  Identities=17%  Similarity=0.248  Sum_probs=126.6

Q ss_pred             CeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEE
Q 027585           62 DFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFY  141 (221)
Q Consensus        62 df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~  141 (221)
                      .|.|+.-..+ +....|+.++.++..++|.+.  ++++.++++.||+..++|||+++.|++||++|++++++.+.+|+..
T Consensus        20 ~~~~~~~~~~-~~~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~   96 (361)
T 2vqa_A           20 AFTYAFSKTP-LVLYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE   96 (361)
T ss_dssp             CSEECGGGSC-CEEETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             ceEEEcccCC-ceecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE
Confidence            4778854333 344578999999999999887  4689999999999999999997799999999999999987666545


Q ss_pred             EEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCe---eeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          142 SKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPG---AVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       142 ~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg---~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                      .+.|++||+++||+|.+|++.|.++++++++.+++..++.   .+...+++ +.   +|.++|+++|+++.+.++++++
T Consensus        97 ~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~~~~~-~~---~p~~vLa~~~~v~~~~~~~l~~  171 (361)
T 2vqa_A           97 IADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWL-SH---TPIAWVEENLGWTAAQVAQLPK  171 (361)
T ss_dssp             EEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEHHHHH-HT---SCHHHHHHHHTCCHHHHTTSCS
T ss_pred             EEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecHhHHH-Hh---CCHHHHHHHhCcCHHHHHhccc
Confidence            7999999999999999999999999999999999887765   45555554 64   9999999999999999988764

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.84  E-value=1.4e-20  Score=175.34  Aligned_cols=140  Identities=19%  Similarity=0.377  Sum_probs=116.3

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe---------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV---------------  139 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~---------------  139 (221)
                      ...|+.+..++ ...|.|+++|+++++++++||++.+||||+. .|++||++|+++++++.++..               
T Consensus        24 ~se~G~~e~~~-~~~~~l~~~gv~~~r~~i~pggl~~Ph~~~~-~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~  101 (493)
T 2d5f_A           24 ESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYSPY-PQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS  101 (493)
T ss_dssp             ECSSEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEECSS-CEEEEEEECEEEEEECCTTCCCCEEECC--------
T ss_pred             ecCCcEEEEeC-CCChhhccCCEEEEEEEeCCCcEeCceecCC-CeEEEEEeCEEEEEEEeCCCcccccccccccccccc
Confidence            45677666655 5559999999999999999999999999985 899999999999999954310               


Q ss_pred             ----------EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC--------Ceeeecc---------------
Q 027585          140 ----------FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL--------PGAVIVP---------------  186 (221)
Q Consensus       140 ----------~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~---------------  186 (221)
                                -..+.|++||+++||+|++||++|.|+++++++++++..+        +..+.++               
T Consensus       102 ~~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~  181 (493)
T 2d5f_A          102 RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQ  181 (493)
T ss_dssp             -----CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCGGGTC---
T ss_pred             ccccccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeeccCCccccchhhhhhcc
Confidence                      1256999999999999999999999999999999987443        2334443               


Q ss_pred             --------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhh
Q 027585          187 --------------------TTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF  219 (221)
Q Consensus       187 --------------------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~  219 (221)
                                          .++|+.   +++++|+++|+++.+++++|++..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~nif~g---f~~e~La~aF~v~~~~v~kl~~~~  231 (493)
T 2d5f_A          182 QQKSHGGRKQGQHQQQEEEGGSVLSG---FSKHFLAQSFNTNEDTAEKLRSPD  231 (493)
T ss_dssp             ------------------CCCCGGGG---SCHHHHHHHTTCCHHHHHHTTCTT
T ss_pred             cccccccccccccccccccccchhhc---CCHHHHHhHhCCCHHHHHHhhhcc
Confidence                                368875   999999999999999999998654

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.83  E-value=1.3e-20  Score=173.88  Aligned_cols=138  Identities=16%  Similarity=0.253  Sum_probs=118.4

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EE------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FY------------  141 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~------------  141 (221)
                      ...+|.+..++... |+|+++|+++++++++||+..+||+|+ +.|++||++|++++++..++.+ .+            
T Consensus        22 ~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~   99 (466)
T 3kgl_A           22 KAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGS   99 (466)
T ss_dssp             EETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC--
T ss_pred             eCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhhccccccccccc
Confidence            57788888888766 999999999999999999999999998 7999999999999999975211 00            


Q ss_pred             ----------------------------------------------EEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          142 ----------------------------------------------SKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       142 ----------------------------------------------~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                                                                    .+.|++||+++||+|.+||++|.|++++++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~  179 (466)
T 3kgl_A          100 PFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVL  179 (466)
T ss_dssp             ---------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEE
Confidence                                                          2489999999999999999999999999999999


Q ss_pred             cCCCC--------eeeecc------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          176 NSHLP--------GAVIVP------------------TTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       176 ~s~~p--------g~~~~~------------------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                      +..+.        ..+.++                  .++|+.   ++.++|+++|+++.++++||++
T Consensus       180 d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sG---F~~e~La~Af~v~~e~~~kL~~  244 (466)
T 3kgl_A          180 DLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNG---FTPEVLAKAFKIDVRTAQQLQN  244 (466)
T ss_dssp             ESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGG---SCHHHHHHHHTSCHHHHHHHTC
T ss_pred             cCCCcccccCCceeeeEecCCCccccccccccccccCCCcccc---CCHHHHHHHhCCCHHHHHHHhc
Confidence            66543        344444                  267774   9999999999999999999974

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.82  E-value=1.9e-19  Score=162.09  Aligned_cols=153  Identities=20%  Similarity=0.291  Sum_probs=128.9

Q ss_pred             ccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC
Q 027585           59 TSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN  138 (221)
Q Consensus        59 ~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~  138 (221)
                      ....|+|+....+. ....++.++.+....++...  ++.+.+++++||+..++|||+++.|++||++|++++.+++.+|
T Consensus       222 ~~~~~v~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g  298 (385)
T 1j58_A          222 VPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDG  298 (385)
T ss_dssp             CSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETT
T ss_pred             CCCCeeeecccCCC-eeCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCC
Confidence            35678888554432 33446677777777777543  5789999999999999999998899999999999999985555


Q ss_pred             eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          139 VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       139 ~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      +-.++.|++||++++|+|.+|++.|.+++++++++++....+....+.+|+ +.   +|+++++++|+++.+++++|++.
T Consensus       299 ~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~~~~l-~~---~~~~v~~~~f~~~~~~~~~l~~~  374 (385)
T 1j58_A          299 HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWL-AM---LPETFVQAHLDLGKDFTDVLSKE  374 (385)
T ss_dssp             EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHH-HT---SCHHHHHHHHTCCHHHHTTCCSS
T ss_pred             cEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCHHHHH-Hh---CCHHHHHHHhCCCHHHHHhhhcc
Confidence            444899999999999999999999999999999999998888888887776 53   99999999999999999999764

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.82  E-value=4.6e-20  Score=172.08  Aligned_cols=138  Identities=14%  Similarity=0.281  Sum_probs=116.8

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe---------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV---------------  139 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~---------------  139 (221)
                      ...+|.+..++. ..|+|+++|+++++++++||+..+||||+ +.|++||++|++.++++.+++.               
T Consensus        27 ~se~G~~e~~~~-~~~~l~~~gvs~~r~~i~p~gl~lPh~~~-a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (510)
T 3c3v_A           27 ESEGGYIETWNP-NNQEFECAGVALSRLVLRRNALRRPFYSN-APQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQS  104 (510)
T ss_dssp             EETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEECS-SCEEEEEEECCEEEEEECTTCCCCEEEECCC------
T ss_pred             ccCCceEEEeCC-CCcccccCcEEEEEEEECCCCCccceecC-CCeEEEEEeCEEEEEEEeCCCcccccccccccccccc
Confidence            567777777765 44999999999999999999999999998 5999999999999999986431               


Q ss_pred             --------------------EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCC--------eeeecc-----
Q 027585          140 --------------------FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLP--------GAVIVP-----  186 (221)
Q Consensus       140 --------------------~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~p--------g~~~~~-----  186 (221)
                                          ...+.|++||+++||+|++||++|.|+++++++++++..++        ..+.++     
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG~~~~  184 (510)
T 3c3v_A          105 QRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQ  184 (510)
T ss_dssp             --------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSCCCCC
T ss_pred             ccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecCCccc
Confidence                                01378999999999999999999999999999999977653        233332     


Q ss_pred             -------------------------------------------------------chhhcCCCCCCHHHHHhhcCCC-HH
Q 027585          187 -------------------------------------------------------TTLFASTPSVPNQVLTKTFQVD-DD  210 (221)
Q Consensus       187 -------------------------------------------------------~~lf~~~p~~~~~vla~~f~l~-~~  210 (221)
                                                                             .++|+.   ++.++|+++|+++ .+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sg---F~~~~La~af~v~~~~  261 (510)
T 3c3v_A          185 EFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSG---FTPEFLAQAFQVDDRQ  261 (510)
T ss_dssp             TTGGGCC------------------------------------------------CCTGGG---SCHHHHHHHHTCCCHH
T ss_pred             ccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceec---CCHHHHHHHhCCCHHH
Confidence                                                                   247774   9999999999999 99


Q ss_pred             HHHHHHh
Q 027585          211 LISTIKS  217 (221)
Q Consensus       211 ~v~~l~~  217 (221)
                      ++++|++
T Consensus       262 ~~~~l~~  268 (510)
T 3c3v_A          262 IVQNLRG  268 (510)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhhc
Confidence            9999975

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.80  E-value=1.4e-19  Score=168.50  Aligned_cols=142  Identities=16%  Similarity=0.332  Sum_probs=118.9

Q ss_pred             CCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-Ce---------
Q 027585           71 EGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NV---------  139 (221)
Q Consensus        71 ~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~---------  139 (221)
                      |.+. ...||.+..++ .++|+|+++|++++|+++.|+|+++||+|+ +.|++||++|++.++++.+. .+         
T Consensus        22 P~~~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~   99 (531)
T 3fz3_A           22 PDNRIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFEESQQSS   99 (531)
T ss_dssp             CCEEEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEECCCC--
T ss_pred             CchhcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCccccccccccc
Confidence            3344 67888888887 568999999999999999999999999998 79999999999999998652 00         


Q ss_pred             -----------------------------------------------------------------------EEEEEecCC
Q 027585          140 -----------------------------------------------------------------------FYSKVLSAG  148 (221)
Q Consensus       140 -----------------------------------------------------------------------~~~~~L~~G  148 (221)
                                                                                             ...+.+++|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~G  179 (531)
T 3fz3_A          100 QQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREG  179 (531)
T ss_dssp             -----------------------------------------------------------------CCSCEESCCEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCC
Confidence                                                                                   114678999


Q ss_pred             cEEEECCCCeEEEEecCCccEEEEEEEcCCC--------Ceeeecc----------------------------------
Q 027585          149 EMFVIPRGLIHFQQNVGEGKALAFTAFNSHL--------PGAVIVP----------------------------------  186 (221)
Q Consensus       149 Dv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~----------------------------------  186 (221)
                      |++.+|+|+.||++|.|+++++++++++..|        |..+.++                                  
T Consensus       180 DviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (531)
T 3fz3_A          180 DVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRP  259 (531)
T ss_dssp             EEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC-------------------------
T ss_pred             cEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999995533        2223332                                  


Q ss_pred             ---------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          187 ---------TTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       187 ---------~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                               .++|+.   ++.++|++||++|.++++||++
T Consensus       260 ~~~~~~~~~~nifsG---Fs~e~La~A~~v~~~~a~kLq~  296 (531)
T 3fz3_A          260 RQQEQQGNGNNVFSG---FNTQLLAQALNVNEETARNLQG  296 (531)
T ss_dssp             -------CCSSGGGG---SCHHHHHHHHTSCHHHHHHHHT
T ss_pred             chhhhcccCCCeeec---CCHHHHHHHHCCCHHHHHHHhc
Confidence                     368885   9999999999999999999985

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.78  E-value=5.3e-19  Score=159.10  Aligned_cols=147  Identities=18%  Similarity=0.269  Sum_probs=123.5

Q ss_pred             CeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEE
Q 027585           62 DFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFY  141 (221)
Q Consensus        62 df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~  141 (221)
                      .++|+.-..+. ....|+.++.++...+|.++  ++++.++++.||+..++|||+ +.|++||++|++++++++++|+.+
T Consensus        47 ~~~~~~~~~~~-~~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~  122 (385)
T 1j58_A           47 NMKFSFSDTHN-RLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSF  122 (385)
T ss_dssp             CCEECGGGSCC-EEETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEE
T ss_pred             ceEEEcccCCc-cccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEE
Confidence            47787544332 44578899999999999988  688999999999999999999 599999999999999998778766


Q ss_pred             EEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCee---eeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          142 SKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA---VIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       142 ~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~---~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                      .+.|++||+++||+|.+|++.|.+ ++++++.+++...+..   +.+. ++|+.   +|.++|+++|+++.++++++++
T Consensus       123 ~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~~~-~~~~~---~p~evla~~~~vs~~~~~~l~~  196 (385)
T 1j58_A          123 IDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQLT-DWLAH---TPKEVIAANFGVTKEEISNLPG  196 (385)
T ss_dssp             EEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEEHH-HHHHT---SCHHHHHHHHTCCTGGGTTSCS
T ss_pred             EEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhhhh-hhhhc---ccHHHHHHHhCCCHHHHHhccc
Confidence            779999999999999999999987 4689999998877653   2343 45564   9999999999999988887754

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.64  E-value=1.9e-16  Score=113.13  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             EecccCCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC
Q 027585           65 FDGLSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN  138 (221)
Q Consensus        65 ~~~l~~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~  138 (221)
                      |+.+.+.+.+ +..| +++.+++.++|+|+++|++++++++.||++.+||||++|.|++||++|++++++++.+|
T Consensus         4 fnl~~~~p~~~n~~G-~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g   77 (79)
T 1dgw_X            4 FNLRSRDPIYSNNYG-KLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ   77 (79)
T ss_dssp             EETTSSCCSEECSSE-EEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred             cccccCCCCccCCCC-cEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence            5555555555 5555 45999999999999999999999999999999999999999999999999999998754

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=1.5e-15  Score=115.31  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=74.7

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEE-EecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF-FTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~-~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++.+.++.++||+..++|||+...|++||++|++++.+ +++     .+.|++||++++|+|.+|++.|.++++++++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v  112 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGI-----VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSV  112 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTC-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCe-----EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEE
Confidence            46788999999999999999977999999999999998 666     899999999999999999999999999999999


Q ss_pred             EcCCCCeee
Q 027585          175 FNSHLPGAV  183 (221)
Q Consensus       175 ~~s~~pg~~  183 (221)
                      +....+++.
T Consensus       113 ~~p~~~~~~  121 (125)
T 3h8u_A          113 VAPGNAGFA  121 (125)
T ss_dssp             EESTTCCCC
T ss_pred             ECCCcccch
Confidence            987776654

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.59  E-value=1.1e-14  Score=115.82  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=77.2

Q ss_pred             ceEEEEEEEcCCC-cCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC-CeEEEEecCCccEEEEE
Q 027585           96 GISMNRVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG-LIHFQQNVGEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g-~~H~~~N~g~~~a~~l~  173 (221)
                      ++.+.+++++||+ ..++|||+...|++||++|++++.++++     ++.|++||++++|+| ..|++.|.+++++++++
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~  119 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND-----QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLV  119 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCCEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE-----EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEE
Confidence            5789999999999 5899999666999999999999999887     899999999999998 99999999999999999


Q ss_pred             EEcCCCCeeeecc
Q 027585          174 AFNSHLPGAVIVP  186 (221)
Q Consensus       174 ~~~s~~pg~~~~~  186 (221)
                      +.....+....++
T Consensus       120 v~~p~~~~~~~~p  132 (162)
T 3l2h_A          120 IGQRLDQDVVDYP  132 (162)
T ss_dssp             EEECCSEEEEEET
T ss_pred             EECCCCCCeEecC
Confidence            9987766555554

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.57  E-value=2.4e-14  Score=114.07  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=88.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC----CeEEEEEecCCcEEEECCCCeEEEEecC-CccEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN----NVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKAL  170 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~  170 (221)
                      ++.+.++.++||+..++|+|+. .|++||++|++++.+++.+    ++...+.|++||++++|+|..|++.|.+ +++++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~  118 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRHSC-EEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ  118 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEESS-CEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEE
T ss_pred             cEEEEEEEECCCCcCCCeECCC-CeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEE
Confidence            4788899999999999999986 8999999999999998821    1223899999999999999999999999 89999


Q ss_pred             EEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 027585          171 AFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLIST  214 (221)
Q Consensus       171 ~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~  214 (221)
                      +++++...........+|+ .   ++....+...+.++.+.+++
T Consensus       119 ~l~i~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A          119 VLVIISRPPAKIFLYDDWS-M---PHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             EEEEEESSSCCEEEESSTT-S---CGGGCEEESSCTTTHHHHHH
T ss_pred             EEEEECCCCcccccccccc-c---CCcCccceeccccccccccc
Confidence            9999876554444444443 2   14444444455666666664

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.57  E-value=7.8e-15  Score=107.29  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe--cCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT--TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~--~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+.+.+++++||+..++|.|+...|++||++|++++.+++  +     .+.|++||++++|+|..|++.|.|+++++++.
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~   91 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTRPEGVEHNVINPSDTEFVFVE   91 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEEECTTCEEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEeCCCCcccCEeCCCCcEEEEE
Confidence            5789999999999999999998557999999999999876  4     89999999999999999999999999999887


Q ss_pred             EE
Q 027585          174 AF  175 (221)
Q Consensus       174 ~~  175 (221)
                      +-
T Consensus        92 v~   93 (97)
T 2fqp_A           92 IE   93 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.56  E-value=2.1e-14  Score=104.16  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=71.6

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .++.+.++.++||...++|+|++..|++||++|++++.++++     .+.+++||++++|+|..|.+.|.++++++++.+
T Consensus        26 ~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v  100 (105)
T 1v70_A           26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            357889999999999999999976899999999999999876     899999999999999999999999999999988


Q ss_pred             EcC
Q 027585          175 FNS  177 (221)
Q Consensus       175 ~~s  177 (221)
                      +..
T Consensus       101 ~~p  103 (105)
T 1v70_A          101 TAP  103 (105)
T ss_dssp             EES
T ss_pred             eCC
Confidence            764

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.55  E-value=1.2e-13  Score=111.30  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=89.9

Q ss_pred             CcccccCCeEEecccCCCC----cccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEE
Q 027585           55 AAEVTSGDFFFDGLSKEGN----TTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLL  130 (221)
Q Consensus        55 p~~~~~~df~~~~l~~~~~----~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~  130 (221)
                      ++-+..+++.+..+.....    ....|...+.+..... +....++.+.+++++||+..++|||+. .|++||++|+++
T Consensus        11 ~~iv~~~~~~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~-g~~~~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~   88 (167)
T 3ibm_A           11 SRVLRERDYRWEGTEEEAYKAEGTHFSGARRQTLVGRPA-GQEAPAFETRYFEVEPGGYTTLERHEH-THVVMVVRGHAE   88 (167)
T ss_dssp             CEEECEETTEETTCCCC---------CCEEEEEEECTTT-TCCSSSEEEEEEEECTTCBCCCBBCSS-CEEEEEEESEEE
T ss_pred             CceeecCCcccccceeeeccCCCCcCCCcEEEEEECCCC-CCCCCcEEEEEEEECCCCCCCCccCCC-cEEEEEEeCEEE
Confidence            3456677777776543111    1224555554443332 222346889999999999999999985 999999999999


Q ss_pred             EEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC-CccEEEEEEEcCC
Q 027585          131 VGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG-EGKALAFTAFNSH  178 (221)
Q Consensus       131 v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~~a~~l~~~~s~  178 (221)
                      +.++++     .+.|++||++++|+|.+|.+.|.+ ++++++++++...
T Consensus        89 ~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A           89 VVLDDR-----VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             EEETTE-----EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             EEECCE-----EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            999887     999999999999999999999999 9999999998755

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.54  E-value=2.3e-14  Score=116.40  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=74.4

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .|..+.+++++||+..++|.|+. .|++||++|++++.++ ++     ++.|++||++ ||+|..|+++|.|++++++++
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~-eE~~~VLeGel~l~ld~ge-----~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~  149 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNS-IDYGIVLEGEIELELDDGA-----KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAF  149 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSE-EEEEEEEESCEEEECGGGC-----EEEECTTCEE-EECSCCBEEECCSSSCEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecCc-eEEEEEEeCEEEEEECCCe-----EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEE
Confidence            47889999999999999999986 8999999999999998 55     8999999999 999999999999999999999


Q ss_pred             EEcCCCCe
Q 027585          174 AFNSHLPG  181 (221)
Q Consensus       174 ~~~s~~pg  181 (221)
                      ++....|-
T Consensus       150 V~~P~~p~  157 (172)
T 3es1_A          150 ILIEAPAY  157 (172)
T ss_dssp             EEEECCCC
T ss_pred             EEcCCCce
Confidence            99988774

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.54  E-value=7.1e-14  Score=112.01  Aligned_cols=86  Identities=19%  Similarity=0.160  Sum_probs=77.3

Q ss_pred             ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCC--CeEEEEecCCccEEEE
Q 027585           96 GISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG--LIHFQQNVGEGKALAF  172 (221)
Q Consensus        96 gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g--~~H~~~N~g~~~a~~l  172 (221)
                      .+.+.+++++||+.. ++|||+..+|++||++|++++.++++     ++.|++||++++|+|  ..|.+.|.++++++++
T Consensus        42 ~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-----~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l  116 (163)
T 3i7d_A           42 QFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-----EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFL  116 (163)
T ss_dssp             SEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCCCBEEECCSSSCEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-----EEEeCCCCEEEECCCCCcceEEEECCCCCEEEE
Confidence            588999999999965 89999986799999999999999887     899999999999999  9999999999999999


Q ss_pred             EEEcCCCCeeeecc
Q 027585          173 TAFNSHLPGAVIVP  186 (221)
Q Consensus       173 ~~~~s~~pg~~~~~  186 (221)
                      ++..........+.
T Consensus       117 ~v~~p~~~d~~~yp  130 (163)
T 3i7d_A          117 VVGTRTPTETAYYS  130 (163)
T ss_dssp             EEEECCSCEEEEET
T ss_pred             EEECCCCCCcccCC
Confidence            99987766555444

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.53  E-value=9.5e-14  Score=109.07  Aligned_cols=84  Identities=15%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++.+.++.++||...++|+|+...|++||++|++++.+++..+. .+++.|++||++++|+|.+|.+.|.++++++++++
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            46788999999999999999976799999999999999887211 12399999999999999999999999999999988


Q ss_pred             EcCCC
Q 027585          175 FNSHL  179 (221)
Q Consensus       175 ~~s~~  179 (221)
                      +....
T Consensus       122 ~~~~~  126 (148)
T 2oa2_A          122 YAPPQ  126 (148)
T ss_dssp             EESCC
T ss_pred             ECCCC
Confidence            76543

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.53  E-value=2.1e-14  Score=122.34  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEE--------Eec-------CCeEEEEEecCCcEEEECCCCe
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF--------FTT-------NNVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~--------~~~-------~~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      +.++++.+++++||+..++|+|++..|++||++|++++.+        +++       +++.+.+.+++||++++|+|.+
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            3457899999999999999999988999999999999998        443       2355689999999999999999


Q ss_pred             EEEEecCCccEEE-EEEE
Q 027585          159 HFQQNVGEGKALA-FTAF  175 (221)
Q Consensus       159 H~~~N~g~~~a~~-l~~~  175 (221)
                      |.++|.+++++++ +.++
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            9999999999998 6666

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.51  E-value=9.2e-14  Score=107.41  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEE--EEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVG--FFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~--~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+.+.+++++||+..++|+|+. .|++||++|++++.  ++++     .+.+++||++++|+|..|.+.|.++++++++.
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           38 RFVLTEFEVSPNGSTPPHFHEW-EHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             SEEEEEEEEEEEEECCCEECSS-CEEEEEEEECEEEEEGGGTE-----EEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             cEEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEEeECCE-----EEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            5789999999999999999997 88899999999999  7766     89999999999999999999999999999999


Q ss_pred             EEcCCCCeee
Q 027585          174 AFNSHLPGAV  183 (221)
Q Consensus       174 ~~~s~~pg~~  183 (221)
                      ++....+...
T Consensus       112 i~~~~~~~~~  121 (145)
T 3ht1_A          112 VAPCERPPVR  121 (145)
T ss_dssp             EEESCCCCCE
T ss_pred             EECCCCCCee
Confidence            9987766543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.51  E-value=1.2e-13  Score=101.89  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             cceEEEEEEEcCCCcCCCC--CCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPH--SHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H--~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .++.+.++.+.||...++|  +|++..|++||++|++++.++++     .+.|++||++++|+|..|.+.|.++++++++
T Consensus        19 ~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~   93 (113)
T 2gu9_A           19 RQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-----TQALQAGSLIAIERGQAHEIRNTGDTPLKTV   93 (113)
T ss_dssp             TTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-----EEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEcCCCCCEEEE
Confidence            3578899999999998888  99856999999999999999876     8999999999999999999999999999999


Q ss_pred             EEEcCC
Q 027585          173 TAFNSH  178 (221)
Q Consensus       173 ~~~~s~  178 (221)
                      .++...
T Consensus        94 ~v~~~~   99 (113)
T 2gu9_A           94 NFYHPP   99 (113)
T ss_dssp             EEEESC
T ss_pred             EEECCC
Confidence            887653

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.48  E-value=2.8e-13  Score=110.60  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             cccceEEEEEEEcCCCcCC---CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec-CCcc
Q 027585           93 NTLGISMNRVDFAPGGLNP---PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV-GEGK  168 (221)
Q Consensus        93 ~~~gis~~~v~l~Pgg~~~---~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~-g~~~  168 (221)
                      .+..+.+.+++++||+..+   +|+|++ .|++||++|++++.+++. +....+.|++||+++||++.+|.+.|. ++++
T Consensus       113 ~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~-~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~  190 (198)
T 2bnm_A          113 RAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDK-ENPKEALLPTGASMFVEEHVPHAFTAAKGTGS  190 (198)
T ss_dssp             TSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCT-TSCEEEEECTTCEEEECTTCCEEEEESTTSCC
T ss_pred             CCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCc-CCcccEEECCCCEEEeCCCCceEEEecCCCCC
Confidence            3446889999999999765   799987 999999999999999881 111189999999999999999999999 9999


Q ss_pred             EEEEEEE
Q 027585          169 ALAFTAF  175 (221)
Q Consensus       169 a~~l~~~  175 (221)
                      +++++++
T Consensus       191 ~~~l~v~  197 (198)
T 2bnm_A          191 AKLIAVN  197 (198)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999875

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.48  E-value=7.6e-14  Score=105.81  Aligned_cols=78  Identities=24%  Similarity=0.500  Sum_probs=71.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.++.++||+..++|+|+. .|++||++|++++.++++     .+.|++||++++|+|..|.+.|.++ +++++.++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~  112 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTIGEE-----TRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIF  112 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEETTE-----EEEECTTEEEEECTTCCEEEECCTT-CEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEE
Confidence            5789999999999999999997 999999999999999877     8999999999999999999999987 89999888


Q ss_pred             cCCCC
Q 027585          176 NSHLP  180 (221)
Q Consensus       176 ~s~~p  180 (221)
                      .....
T Consensus       113 ~p~~~  117 (126)
T 4e2g_A          113 SPPRE  117 (126)
T ss_dssp             ESCCH
T ss_pred             CCCCc
Confidence            75443

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.48  E-value=5.1e-13  Score=109.68  Aligned_cols=83  Identities=17%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             ceEEEEEEEcCCCc------CCCCCCC--CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           96 GISMNRVDFAPGGL------NPPHSHP--RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        96 gis~~~v~l~Pgg~------~~~H~Hp--~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      .+.+..++++||+.      .++|+|+  +..|++||++|++++.++++.|+...+.|++||++++|+|..|++.|.|++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~  145 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcc
Confidence            57888889999998      7899998  447999999999999999886777779999999999999999999999999


Q ss_pred             cEEEEEEEcCC
Q 027585          168 KALAFTAFNSH  178 (221)
Q Consensus       168 ~a~~l~~~~s~  178 (221)
                      ++++++++...
T Consensus       146 ~~~~l~v~~~~  156 (190)
T 1x82_A          146 PFIFLAIYPAD  156 (190)
T ss_dssp             CEEEEEEEETT
T ss_pred             cEEEEEEECCC
Confidence            99999988754

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.48  E-value=1.2e-13  Score=104.23  Aligned_cols=73  Identities=15%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++.+.++.++||...++|||+. .|++||++|++++.++++     ++.|++||++++|+|.+|.+.|.++....++.+
T Consensus        35 ~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v  107 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGVDGA-----QRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVV  107 (114)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEEESSSEEEEEEEE
T ss_pred             CEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEEEeCCCcEEEEEEE
Confidence            5789999999999999999997 899999999999999887     899999999999999999999986655444333

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.47  E-value=1.8e-13  Score=109.27  Aligned_cols=79  Identities=14%  Similarity=0.108  Sum_probs=73.3

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .++.+..++++||+..++|+|+. .|++||++|++++.++++     .+.|++||++++|+|..|.+.|.++++++++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~v~v~g~-----~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAH-VHAVMIHRGHGQCLVGET-----ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            46888999999999999999997 899999999999999887     999999999999999999999999999999999


Q ss_pred             EcCCC
Q 027585          175 FNSHL  179 (221)
Q Consensus       175 ~~s~~  179 (221)
                      ++...
T Consensus       116 ~~~~~  120 (156)
T 3kgz_A          116 VNAAR  120 (156)
T ss_dssp             EESSC
T ss_pred             EeCCC
Confidence            87554

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.46  E-value=2.7e-13  Score=104.71  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      +..+.+.+++++||+..++|+|++..|++||++|++++.++++     .+.|++||++++|+|.+|++.|.+++++++++
T Consensus        54 ~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           54 NKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             TSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             CceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE-----EEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            3346788999999999999999866999999999999999877     89999999999999999999999999999988


Q ss_pred             EE
Q 027585          174 AF  175 (221)
Q Consensus       174 ~~  175 (221)
                      +.
T Consensus       129 v~  130 (133)
T 1o4t_A          129 VI  130 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.46  E-value=3.8e-13  Score=100.94  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEE-EecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSK-VLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~-~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++.+.++.+.||+..++|+|+. .|++||++|++++.++++     .+ .|++||++++|+|.+|.+.|.++++++++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~Vl~G~~~~~i~~~-----~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSNS-YVHLIIIKGEMTLTLEDQ-----EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECSS-CEEEEEEESEEEEEETTS-----CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCCC-cEEEEEEeCEEEEEECCE-----EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            4678889999999999999986 999999999999999876     77 9999999999999999999999999998887


Q ss_pred             Ec
Q 027585          175 FN  176 (221)
Q Consensus       175 ~~  176 (221)
                      ..
T Consensus       100 ~~  101 (117)
T 2b8m_A          100 KA  101 (117)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.45  E-value=3.4e-14  Score=104.98  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.+.+++++||+..++|+|+...|+++|++|++++...+  ++.....+++||++++|+|..|++.|.|+++++++.+-
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d--~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeVE   93 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPD--GTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIE   93 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTT--SCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCC--CceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEEE
Confidence            4789999999999999999998789999999999987654  33336779999999999999999999999999999873

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.45  E-value=2.9e-13  Score=109.18  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .++.+..++++||+..++|||+. .|++||++|++++.++++     .+.|++||++++|+|..|.+.|.++++++++++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v~g~-----~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMVGRA-----VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            46888999999999999999997 899999999999999877     999999999999999999999999999999998


Q ss_pred             EcCC
Q 027585          175 FNSH  178 (221)
Q Consensus       175 ~~s~  178 (221)
                      +...
T Consensus       125 ~~~~  128 (166)
T 3jzv_A          125 VNAE  128 (166)
T ss_dssp             EESS
T ss_pred             EccC
Confidence            8754

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.44  E-value=3.6e-13  Score=100.50  Aligned_cols=77  Identities=22%  Similarity=0.302  Sum_probs=68.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.+++++||...++|+|+. .|++||++|++++.++++     .+.|++||++++|+|..|.+.|.+  +++++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHRH-SQVSYVVEGEFHVNVDGV-----IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCSS-EEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECCc-ceEEEEEeeEEEEEECCE-----EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEE
Confidence            3788999999999999999995 999999999999999776     899999999999999999999986  67888888


Q ss_pred             cCCCC
Q 027585          176 NSHLP  180 (221)
Q Consensus       176 ~s~~p  180 (221)
                      ....+
T Consensus       105 ~p~~~  109 (116)
T 2pfw_A          105 SPARE  109 (116)
T ss_dssp             ESCCG
T ss_pred             CCchh
Confidence            75544

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.43  E-value=9.6e-13  Score=103.54  Aligned_cols=97  Identities=23%  Similarity=0.319  Sum_probs=80.1

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEE-EEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYS-KVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~-~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .++.+.++.++||+..++|+|+. .|++||++|++++.++++     . +.|++||++++|+|.+|++.|.+++++++++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~~~-----~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~  119 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGK-----PARILKKGDVVEIPPNVVHWHGAAPDEELVHIG  119 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTS-----CCEEEETTCEEEECTTCCEEEEEBTTBCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEECCE-----EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            46889999999999999999998 999999999999999876     6 8999999999999999999999999999998


Q ss_pred             EEcCCCCeeeeccchhhcCCCCCCHHHHHhh
Q 027585          174 AFNSHLPGAVIVPTTLFASTPSVPNQVLTKT  204 (221)
Q Consensus       174 ~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~  204 (221)
                      ++......   ...|+ .   .+.++.+.++
T Consensus       120 v~~~~~~~---~~~wl-~---~v~~e~~~~~  143 (147)
T 2f4p_A          120 ISTQVHLG---PAEWL-G---SVTEEEYRKA  143 (147)
T ss_dssp             EECCGGGC---CCEEC-C---CCCHHHHHHH
T ss_pred             EEccCCCC---Cceec-c---cCCHHHhhhc
Confidence            88654321   22343 3   2666655543

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.42  E-value=3.1e-13  Score=103.21  Aligned_cols=78  Identities=24%  Similarity=0.264  Sum_probs=71.4

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..++.+.+++++||+..++|+|+. .|++||++|++++.++++     .+.+++||++++|+|.+|.+.|.+++++++++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~-~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHPW-EHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCSS-CEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCceeCCC-cEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            446889999999999999999995 999999999999999877     89999999999999999999999999999988


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      ++..
T Consensus       119 v~~~  122 (126)
T 1vj2_A          119 LIPK  122 (126)
T ss_dssp             EEEG
T ss_pred             EEcc
Confidence            8753

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.42  E-value=1.5e-12  Score=98.81  Aligned_cols=76  Identities=20%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ..+.+...+++||...++|||+. .|++||++|++++.++++     .+.+++||++++|+|..|.+.|.++++++++++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H~~-~Ei~~v~~G~~~~~i~~~-----~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSHNE-YELFIVIQGNAIIRINDE-----DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCCSS-EEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEecCC-eEEEEEEeCEEEEEECCE-----EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            35788899999999999999975 999999999999999887     999999999999999999999999999988877


Q ss_pred             Ec
Q 027585          175 FN  176 (221)
Q Consensus       175 ~~  176 (221)
                      +-
T Consensus       106 ~f  107 (128)
T 4i4a_A          106 WW  107 (128)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.41  E-value=8.3e-13  Score=101.32  Aligned_cols=80  Identities=14%  Similarity=0.068  Sum_probs=63.5

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe-cCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT-TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~-~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +.+.++.++||+..++|+|+...|++||++|++++.+++ +     .+.|++||++++|+|.+|.+.|.+++ +++++++
T Consensus        43 ~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~~  116 (134)
T 2o8q_A           43 AHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYEDIG-----AVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEIV  116 (134)
T ss_dssp             EEEEEECC-----CCCEEECCSCEEEEEEESEEEEEETTTE-----EEEEETTCEEECCTTCCEEEEEECTT-CEEEEEE
T ss_pred             EEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECCcE-----EEEecCCCEEEECCCCcEEeEeCCCC-eEEEEEE
Confidence            346666667888899999997799999999999999987 6     89999999999999999999998774 6888777


Q ss_pred             cCCCCee
Q 027585          176 NSHLPGA  182 (221)
Q Consensus       176 ~s~~pg~  182 (221)
                      .......
T Consensus       117 ~p~~~~~  123 (134)
T 2o8q_A          117 SPAGFAT  123 (134)
T ss_dssp             SSTTCCE
T ss_pred             CCCchhe
Confidence            6655443

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.41  E-value=8.6e-13  Score=106.53  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             eEEEEEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           97 ISMNRVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        97 is~~~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +...+++++| |+...+|.|+.+.|++||++|++++.++++     .+.|++||+++||+|..|.++|.++++++++++.
T Consensus        88 ~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~-----~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~Vq  162 (166)
T 2vpv_A           88 FASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKN-----KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQ  162 (166)
T ss_dssp             CEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             ceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCE-----EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            5778899999 777776656667999999999999999887     9999999999999999999999999999999875

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.40  E-value=9.7e-13  Score=107.10  Aligned_cols=77  Identities=18%  Similarity=0.075  Sum_probs=68.0

Q ss_pred             ccceEEEEEEEcCCCcCC--CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEE
Q 027585           94 TLGISMNRVDFAPGGLNP--PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~--~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      +..+.+.+++++||+..+  +|+|+. .|++||++|++++.++++     .+.|++||+++||++.+|.+.|.+++++ +
T Consensus       101 ~~~~~~~~~~~~pg~~~~~~~H~h~~-~E~~~Vl~G~~~~~~~~~-----~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~  173 (192)
T 1y9q_A          101 DTGLEIFEITLLDHHQQMSSPHALGV-IEYIHVLEGIMKVFFDEQ-----WHELQQGEHIRFFSDQPHGYAAVTEKAV-F  173 (192)
T ss_dssp             TTTEEEEEEEECTTCEEEECCCSTTC-EEEEEEEESCEEEEETTE-----EEEECTTCEEEEECSSSEEEEESSSCEE-E
T ss_pred             CCcEEEEEEEECCCCCccCCCCCCCC-EEEEEEEEeEEEEEECCE-----EEEeCCCCEEEEcCCCCeEeECCCCCcE-E
Confidence            345889999999999765  787765 999999999999999877     8999999999999999999999999999 7


Q ss_pred             EEEEcC
Q 027585          172 FTAFNS  177 (221)
Q Consensus       172 l~~~~s  177 (221)
                      ++++..
T Consensus       174 l~v~~~  179 (192)
T 1y9q_A          174 QNIVAY  179 (192)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            777654

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.40  E-value=1.8e-12  Score=96.46  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+.++.++||...++|+|+. .|++||++|++++.++++     .+.+++||++++|+|..|.+.|.+  ++++++++
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~~-~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~~~v~  110 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALYAVE--AFQMLLVV  110 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTSCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCccCCEECCC-cEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECC--CceEEEEE
Confidence            5778899999999999999996 999999999999998776     899999999999999999999986  56777665


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      ..
T Consensus       111 ~~  112 (115)
T 1yhf_A          111 VK  112 (115)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.39  E-value=1.4e-12  Score=98.99  Aligned_cols=81  Identities=16%  Similarity=0.084  Sum_probs=69.3

Q ss_pred             ccceEEEEEEEcCCCcCC-CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNP-PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~-~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      ..++.+.++.++||...+ +|+|+...+++||++|++++.++++     .+.+++||++++|+|.+|.+.|.++++++++
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~   97 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE-----KIELQAGDWLRIAPDGKRQISAASDSPIGFL   97 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE-----EEEEETTEEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence            335778889999999888 8999873445559999999999877     8999999999999999999999999999988


Q ss_pred             EEEcCCC
Q 027585          173 TAFNSHL  179 (221)
Q Consensus       173 ~~~~s~~  179 (221)
                      +++....
T Consensus        98 ~i~~~~~  104 (125)
T 3cew_A           98 CIQVKAG  104 (125)
T ss_dssp             EEEEETT
T ss_pred             EEEcCCc
Confidence            8775443

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.38  E-value=1.2e-12  Score=111.10  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=72.4

Q ss_pred             eEEEEEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           97 ISMNRVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        97 is~~~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +.+..++++| |+..++|||+. .|++||++|++++.++++     .+.|++||++++|+|.+|.++|.|+++++++.++
T Consensus       145 ~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~  218 (243)
T 3h7j_A          145 VEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTVEGC-----TVEMKFGTAYFCEPREDHGAINRSEKESKSINIF  218 (243)
T ss_dssp             EEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             eEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            5677888999 88899999997 899999999999999887     8999999999999999999999999999999999


Q ss_pred             cCCCCee
Q 027585          176 NSHLPGA  182 (221)
Q Consensus       176 ~s~~pg~  182 (221)
                      ......+
T Consensus       219 ~p~~~d~  225 (243)
T 3h7j_A          219 FPPRYNR  225 (243)
T ss_dssp             ESCSSCC
T ss_pred             cCChhcc
Confidence            8655443

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.36  E-value=1.8e-12  Score=110.98  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC-ccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE-GKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~-~~a~~l  172 (221)
                      ...+.+.+++++||+..++|+|+...|++||++|++++.++++     .+.|++||++++|++.+|++.|.|+ ++++++
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-----~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-----WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  250 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-----EEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEE
Confidence            4458899999999999999999877999999999999999887     9999999999999999999999999 999998


Q ss_pred             EEEc
Q 027585          173 TAFN  176 (221)
Q Consensus       173 ~~~~  176 (221)
                      .+.+
T Consensus       251 ~~~d  254 (261)
T 1rc6_A          251 YSKD  254 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8754

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.35  E-value=7.7e-12  Score=93.28  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      +.+..+.+.||...++|+|+. .|++||++|++++.++++     .+.|++||++++|+|.+|.+.|.  ++++++++..
T Consensus        38 ~~~~~~~~~~g~~~~~H~h~~-~e~~~vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~~  109 (114)
T 2ozj_A           38 VQISLFSFADGESVSEEEYFG-DTLYLILQGEAVITFDDQ-----KIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQITL  109 (114)
T ss_dssp             EEEEEEEEETTSSCCCBCCSS-CEEEEEEEEEEEEEETTE-----EEEECTTCEEEECTTCCBEEEEE--EEEEEEEEEE
T ss_pred             ceEEEEEECCCCccccEECCC-CeEEEEEeCEEEEEECCE-----EEEecCCCEEEECCCCcEEEEeC--CCcEEEEEEE
Confidence            567777889999999999987 999999999999999877     89999999999999999999996  5677776654

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.33  E-value=5.4e-12  Score=92.78  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEE-EEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASES-GIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei-~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ++.+.++.+.||...++|+|+...|+ +||++|++++.++ ++     .+.|++||++++|+|..|.+.|.++  ++++.
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l~  104 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDA-----VIPAPRGAVLVAPISTPHGVRAVTD--MKVLV  104 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGC-----EEEECTTEEEEEETTSCEEEEESSS--EEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCE-----EEEECCCCEEEeCCCCcEEEEEcCC--cEEEE
Confidence            46788999999999999999864687 8999999999987 46     8999999999999999999999765  56666


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      +++.
T Consensus       105 ~~~p  108 (110)
T 2q30_A          105 TIAP  108 (110)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            6653

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.32  E-value=1.5e-11  Score=106.10  Aligned_cols=76  Identities=13%  Similarity=0.231  Sum_probs=69.9

Q ss_pred             cceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC-ccEEEE
Q 027585           95 LGISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE-GKALAF  172 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~-~~a~~l  172 (221)
                      ..+.+.+++++||+..++ |+|+. .|++||++|++++.++++     .+.|++||+++||++.+|++.|.++ ++++++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~~-~E~~yVl~G~~~~~i~~~-----~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l  253 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHVQ-EHGAYLISGQGMYNLDNE-----WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV  253 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSC-CEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEECSSSCEEEE
T ss_pred             CCEEEEEEEECCCCccCcceeccC-eEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCCEEEE
Confidence            468899999999999888 99976 899999999999999887     8999999999999999999999999 999988


Q ss_pred             EEEc
Q 027585          173 TAFN  176 (221)
Q Consensus       173 ~~~~  176 (221)
                      +..+
T Consensus       254 ~~~~  257 (274)
T 1sef_A          254 YSKD  257 (274)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8753

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.31  E-value=5.8e-12  Score=96.07  Aligned_cols=74  Identities=20%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..++++||...++|.  ..+|++||++|++++.++++     ++.|++||+++||+|..|.+.|.+ ++++++.+.
T Consensus        39 ~~~~~~~~~~pG~~~~~H~--~~~E~~~Vl~G~~~~~~~g~-----~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~v~  110 (119)
T 3lwc_A           39 PITIGYGRYAPGQSLTETM--AVDDVMIVLEGRLSVSTDGE-----TVTAGPGEIVYMPKGETVTIRSHE-EGALTAYVT  110 (119)
T ss_dssp             CCEEEEEEECTTCEEEEEC--SSEEEEEEEEEEEEEEETTE-----EEEECTTCEEEECTTCEEEEEEEE-EEEEEEEEE
T ss_pred             CEEEEEEEECCCCCcCccC--CCCEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCEEEEEcCC-CCeEEEEEE
Confidence            4788899999998776664  56999999999999999766     899999999999999999999875 788888877


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      +.
T Consensus       111 ~P  112 (119)
T 3lwc_A          111 YP  112 (119)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.28  E-value=1.3e-11  Score=108.02  Aligned_cols=78  Identities=19%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++.++.+.||+..++|||++..|++||++|++++.++++     .+.|++||++++|+|.+|.+.|.++ +++++.++
T Consensus        45 ~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~  118 (337)
T 1y3t_A           45 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYT  118 (337)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECST-TEEEEEEE
T ss_pred             eEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEEEECCC-CeEEEEEE
Confidence            57899999999999999999866999999999999998776     8999999999999999999999987 68999887


Q ss_pred             cCCC
Q 027585          176 NSHL  179 (221)
Q Consensus       176 ~s~~  179 (221)
                      +...
T Consensus       119 ~p~~  122 (337)
T 1y3t_A          119 MKGN  122 (337)
T ss_dssp             ETTS
T ss_pred             CCCC
Confidence            7654

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.27  E-value=3.7e-11  Score=102.19  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=69.8

Q ss_pred             ccceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      +..+.+.+++++||+..+. |.|.. +|.+||++|++++.++++     .+.|++||+++++++.+|+++|.|+++++++
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h~~-ee~~~vLeG~~~~~~~~~-----~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVHYM-EHGLLMLEGEGLYKLEEN-----YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSS-CEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCCCc-eEEEEEEECEEEEEECCE-----EEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            4568999999999999887 45654 999999999999999887     9999999999999999999999999999999


Q ss_pred             EEEc
Q 027585          173 TAFN  176 (221)
Q Consensus       173 ~~~~  176 (221)
                      .+-+
T Consensus       236 ~~kd  239 (246)
T 1sfn_A          236 LYKD  239 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.25  E-value=1.4e-11  Score=90.99  Aligned_cols=69  Identities=19%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe-cCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT-TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~-~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ..++.+.||. .++|+|+...|++||++|++++.+++ +     .+.|++||++++|+|.+|++.|.  ++++++.+-
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i~   99 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDFADGG-----SMTIREGEMAVVPKSVSHRPRSE--NGCSLVLIE   99 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEETTSC-----EEEECTTEEEEECTTCCEEEEEE--EEEEEEEEE
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEECCCc-----EEEECCCCEEEECCCCcEeeEeC--CCeEEEEEE
Confidence            4556677776 46999987799999999999999988 6     89999999999999999999995  456666543

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.25  E-value=1.5e-11  Score=106.68  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             cceEEEEEEEcCCCcC--CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           95 LGISMNRVDFAPGGLN--PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~--~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      ..+.+.+++++||+..  ++|.|+ ..|++||++|++++.++++     ++.|++||+++||+|..|.++|.++++++++
T Consensus        66 ~~~~~~~~~l~PG~~~~~~~h~H~-~eE~~~Vl~G~l~v~v~g~-----~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l  139 (278)
T 1sq4_A           66 ETFSQYIVELAPNGGSDKPEQDPN-AEAVLFVVEGELSLTLQGQ-----VHAMQPGGYAFIPPGADYKVRNTTGQHTRFH  139 (278)
T ss_dssp             CSCEEEEEEEEEEEEESSCCCCTT-EEEEEEEEESCEEEEESSC-----EEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCccCCCCcCCC-ceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCcEEEEECCCCCEEEE
Confidence            3588999999999875  567787 4999999999999999887     9999999999999999999999999999999


Q ss_pred             EEEc
Q 027585          173 TAFN  176 (221)
Q Consensus       173 ~~~~  176 (221)
                      ++..
T Consensus       140 ~v~~  143 (278)
T 1sq4_A          140 WIRK  143 (278)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8874

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.25  E-value=4.4e-11  Score=89.87  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=59.3

Q ss_pred             ceEEEEEEEcCCCcCCC---CCCCCCcEEEEEEeCEEEEEEEecCCeEEE--EEecCCcEEEECCCCeEEEEecCCc-cE
Q 027585           96 GISMNRVDFAPGGLNPP---HSHPRASESGIVIKGKLLVGFFTTNNVFYS--KVLSAGEMFVIPRGLIHFQQNVGEG-KA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~---H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~--~~L~~GDv~~~P~g~~H~~~N~g~~-~a  169 (221)
                      ++.+.++. .+|...++   |.|+ ..|++||++|++++.++++     .  +.|++||+++||+|..|++.|.+++ ++
T Consensus        30 ~~~i~~i~-~~g~~~~~~~~~~~~-~~E~~~Vl~G~~~l~~~~~-----~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~  102 (112)
T 2opk_A           30 GLKIERII-SNGQASPPGFWYDSP-QDEWVMVVSGSAGIECEGD-----TAPRVMRPGDWLHVPAHCRHRVAWTDGGEPT  102 (112)
T ss_dssp             TEEEEEEE-ESSCCCCTTCCBCCS-SEEEEEEEESCEEEEETTC-----SSCEEECTTEEEEECTTCCEEEEEECSSSCE
T ss_pred             CEEEEEEE-eCCccCCCCccccCC-ccEEEEEEeCeEEEEECCE-----EEEEEECCCCEEEECCCCcEEEEeCCCCCCE
Confidence            45566664 44555444   4455 4999999999999999887     6  8999999999999999999999876 67


Q ss_pred             EEEEEEc
Q 027585          170 LAFTAFN  176 (221)
Q Consensus       170 ~~l~~~~  176 (221)
                      ++++++.
T Consensus       103 ~~l~v~~  109 (112)
T 2opk_A          103 VWLAVHC  109 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777765

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.25  E-value=1.6e-11  Score=104.97  Aligned_cols=77  Identities=17%  Similarity=0.061  Sum_probs=68.4

Q ss_pred             cceEEEEEEEcCCCcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSH-PRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+.+++++||+....|.| ++.+|++||++|++++.++++     ++.|++||+++||++.+|.++|.+++++++++
T Consensus        57 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-----~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~  131 (261)
T 1rc6_A           57 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-----TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  131 (261)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            357889999999997766554 566899999999999999887     99999999999999999999999999999999


Q ss_pred             EEc
Q 027585          174 AFN  176 (221)
Q Consensus       174 ~~~  176 (221)
                      +..
T Consensus       132 v~~  134 (261)
T 1rc6_A          132 YKR  134 (261)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.25  E-value=1.3e-11  Score=96.01  Aligned_cols=73  Identities=14%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..++++||   .+|||...+|++||++|++++.++++     .+.|++||+++||+|..|.+.|  ++++++++++
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~~g~-----~~~l~~GD~i~~p~g~~h~~~~--~~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGT--PTSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEE--EEEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEECCE-----EEEECCCcEEEECCCCEEEEEe--CCCEEEEEEE
Confidence            478889999999   45666556999999999999999876     8999999999999999999997  4678888887


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      ...
T Consensus       126 ~p~  128 (133)
T 2pyt_A          126 WPA  128 (133)
T ss_dssp             EST
T ss_pred             cCC
Confidence            543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.24  E-value=1.9e-11  Score=103.53  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             EEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEE-ECCCCeEEEEecCCccEEEEEEEc
Q 027585           98 SMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV-IPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~-~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      .+..+.++||...++|||+. .|++||++|++++.++++     .+.|++||.++ +|+|.+|.+.|.++++++++.+..
T Consensus        35 ~~~~~~~~pg~~~~~H~H~~-~e~~~Vl~G~~~~~~~~~-----~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~r  108 (243)
T 3h7j_A           35 EVLMSYVPPHTNVEPHQHKE-VQIGMVVSGELMMTVGDV-----TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKR  108 (243)
T ss_dssp             EEEEEEECTTEEEEEECCSS-EEEEEEEESEEEEEETTE-----EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEEECCCCccCCEECCC-cEEEEEEEeEEEEEECCE-----EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEec
Confidence            56777899999999999996 999999999999999776     89999999996 999999999999999999998754


Q ss_pred             C
Q 027585          177 S  177 (221)
Q Consensus       177 s  177 (221)
                      -
T Consensus       109 ~  109 (243)
T 3h7j_A          109 L  109 (243)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.21  E-value=2.7e-11  Score=104.38  Aligned_cols=76  Identities=17%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             cceEEEEEEEcCCCcCCCCC-CCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHS-HPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~-Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+.+++++||+....|. |++.+|++||++|++++.++++     ++.|++||+++||++.+|.++|.+++++++++
T Consensus        60 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-----~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~  134 (274)
T 1sef_A           60 ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-----THELEAGGYAYFTPEMKMYLANAQEADTEVFL  134 (274)
T ss_dssp             CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTSCCEEEESSSSCEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            35788999999998766554 4566899999999999999887     99999999999999999999999999999998


Q ss_pred             EE
Q 027585          174 AF  175 (221)
Q Consensus       174 ~~  175 (221)
                      +.
T Consensus       135 v~  136 (274)
T 1sef_A          135 YK  136 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.21  E-value=1.5e-10  Score=101.37  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             EEEEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585           99 MNRVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS  177 (221)
Q Consensus        99 ~~~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s  177 (221)
                      ...+.+.| |...++|||++..|++||++|++++.++++     ++.|++||++++|++.+|++.|.++ +++++.+++.
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i~~~-----~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            34456656 567889999966999999999999999876     8999999999999999999999988 8999999865


Q ss_pred             CC
Q 027585          178 HL  179 (221)
Q Consensus       178 ~~  179 (221)
                      ..
T Consensus       293 ~~  294 (337)
T 1y3t_A          293 GL  294 (337)
T ss_dssp             ST
T ss_pred             cc
Confidence            54

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.20  E-value=6.9e-11  Score=102.00  Aligned_cols=103  Identities=15%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             cccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-
Q 027585           56 AEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-  134 (221)
Q Consensus        56 ~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-  134 (221)
                      +-.+.+|++.+.+  |   ...+..++.+..... +   ..+.+.+++++||+..+.|.|. .+|++||++|++++.++ 
T Consensus        38 avI~~~~iv~s~l--P---g~~~~~~~vL~sP~~-G---~~f~~~lv~l~PGg~s~~~~h~-~EEfiyVleG~l~l~l~~  107 (266)
T 4e2q_A           38 ALITPESHVYSPL--P---DWTNTLGAYLITPAT-G---SHFVMYLAKMKEMSSSGLPPQD-IERLIFVVEGAVTLTNTS  107 (266)
T ss_dssp             EEECGGGCCCEEC--T---TSSSEEEEEEECGGG-T---CSSEEEEEEECSSEECCCCCTT-EEEEEEEEEECEEEEC--
T ss_pred             EEECccceEEeeC--C---CCcCEEEEEEcCCCC-C---CcEEEEEEEECcCCcCCCCCCC-CeEEEEEEEEEEEEEECC
Confidence            4444566666644  2   234455555544433 2   3588999999999988888665 59999999999999998 


Q ss_pred             ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          135 TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       135 ~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++     +++|++||.++||++..|+++|.  ++++++++.
T Consensus       108 g~-----~~~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V~  141 (266)
T 4e2q_A          108 SS-----SKKLTVDSYAYLPPNFHHSLDCV--ESATLVVFE  141 (266)
T ss_dssp             CC-----CEEECTTEEEEECTTCCCEEEES--SCEEEEEEE
T ss_pred             Cc-----EEEEcCCCEEEECCCCCEEEEeC--CCEEEEEEE
Confidence            77     89999999999999999999994  689988884

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.20  E-value=1e-10  Score=104.34  Aligned_cols=82  Identities=21%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             ceEEEEEEEcCCC-cCC--CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           96 GISMNRVDFAPGG-LNP--PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        96 gis~~~v~l~Pgg-~~~--~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .+.+. ..+.|++ ..+  +|+|++..|++||++|++++.+++.+|+...+.|++||++++|+|.+|++.|.++++ +++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l  124 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMT  124 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEE
Confidence            35666 4555655 455  999997799999999999999998444334899999999999999999999998876 888


Q ss_pred             EEEcCCC
Q 027585          173 TAFNSHL  179 (221)
Q Consensus       173 ~~~~s~~  179 (221)
                      .++....
T Consensus       125 ~v~~p~~  131 (350)
T 1juh_A          125 GVIVPGG  131 (350)
T ss_dssp             EEEESSC
T ss_pred             EEEcCcc
Confidence            8876543

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.19  E-value=9.8e-11  Score=93.54  Aligned_cols=71  Identities=15%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEe--CEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIK--GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~--G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      +++..+++  ++..++|||+...|++||++  |++++.++++     .+.|++||+++||+|..|++.+    +++++++
T Consensus        47 ~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~idge-----~~~l~~GD~v~IPpg~~H~i~g----~l~~L~I  115 (157)
T 4h7l_A           47 VSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIELNGQ-----SYPLTKLLAISIPPLVRHRIVG----EATIINI  115 (157)
T ss_dssp             CEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEETTE-----EEECCTTEEEEECTTCCEEEES----CEEEEEE
T ss_pred             EEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEECCE-----EEEeCCCCEEEECCCCeEeeEC----CEEEEEE
Confidence            45555554  55678999987789999999  9999999887     8999999999999999999973    7999998


Q ss_pred             EcCC
Q 027585          175 FNSH  178 (221)
Q Consensus       175 ~~s~  178 (221)
                      ++.+
T Consensus       116 ~~Pp  119 (157)
T 4h7l_A          116 VSPP  119 (157)
T ss_dssp             EESS
T ss_pred             ECCC
Confidence            8754

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.18  E-value=1.2e-10  Score=84.33  Aligned_cols=60  Identities=32%  Similarity=0.436  Sum_probs=52.3

Q ss_pred             CcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          108 GLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       108 g~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      +..++|+|+...|++||++|++++.++++     .+.+++||++++|+|..|.+.|.+  +++++.+
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQIAFRDQ-----NITLQAGEMYVIPKGVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCBEEEEEE--EEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEEEECCE-----EEEEcCCCEEEECCCCeEeeEcCC--CCEEEEE
Confidence            45899999977999999999999999877     899999999999999999999973  5555543

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.18  E-value=6.5e-11  Score=99.37  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.+..+.++||...++|+|+. .|++||++|++++.++++     .+.+++||.+++|+|.+|++.|. .++++++.++
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i~g~-----~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAPG-DALVTVLDGEGKYYVDGK-----PFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-EEEEEEEEEEEEEEETTE-----EEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             CeEEEEEEECCCCccCCEECCC-cEEEEEEeEEEEEEECCE-----EEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            4778899999999999999996 999999999999999887     99999999999999999999993 5667776654

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.17  E-value=3.1e-11  Score=108.02  Aligned_cols=75  Identities=17%  Similarity=0.302  Sum_probs=68.5

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEE-EEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLV-GFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v-~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.+....++||+..++|+|+. .|++||++|++++ .++++     .+.+++||++++|+|..|.+.|.++++++++.+
T Consensus        99 ~l~~~~~~l~PG~~~~~H~H~~-~e~~yVl~G~g~~t~v~g~-----~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v  172 (354)
T 2d40_A           99 TLYAGLQLIMPGEVAPSHRHNQ-SALRFIVEGKGAFTAVDGE-----RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  172 (354)
T ss_dssp             SCEEEEEEECTTCEEEEEEESS-CEEEEEEECSSCEEEETTE-----EEECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCeecCc-ceEEEEEEEEEEEEEECCE-----EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            5788999999999999999986 8999999999988 66555     899999999999999999999999999999988


Q ss_pred             Ec
Q 027585          175 FN  176 (221)
Q Consensus       175 ~~  176 (221)
                      .+
T Consensus       173 ~d  174 (354)
T 2d40_A          173 LD  174 (354)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.15  E-value=1.9e-10  Score=99.66  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             CCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           90 PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        90 P~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      |.-....+.+.+++++||+..+.|.|+.-+|.+||++|++.+.++++     .+.|++||+++++.+..|+++|.|++++
T Consensus       184 p~~~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~-----~~~v~~GD~~~~~~~~~h~~~n~g~~~~  258 (278)
T 1sq4_A          184 MSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD-----WVEVEAGDFMWLRAFCPQACYSGGPGRF  258 (278)
T ss_dssp             TTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE-----EEEEETTCEEEEEESCCEEEECCSSSCE
T ss_pred             CCCcCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEEcCCCCCE
Confidence            43445678999999999999987444444899999999999999887     9999999999999999999999999999


Q ss_pred             EEEEEEcC
Q 027585          170 LAFTAFNS  177 (221)
Q Consensus       170 ~~l~~~~s  177 (221)
                      +++.+.+-
T Consensus       259 ~yl~~~d~  266 (278)
T 1sq4_A          259 RYLLYKDV  266 (278)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            99998864

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.14  E-value=2.5e-10  Score=102.09  Aligned_cols=90  Identities=16%  Similarity=0.016  Sum_probs=75.2

Q ss_pred             CCeeEEEeecc-ccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC
Q 027585           77 FGSAVTPANVL-AFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR  155 (221)
Q Consensus        77 ~g~~v~~~~~~-~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~  155 (221)
                      .|+.+..++.. .++...++  ++....++||+..++|||+. .|+.||++|++++.++++     ++.+++||++++|+
T Consensus       249 ~G~~~~~~np~t~~~~~~ti--~~~~~~l~pG~~~~~H~h~~-~ev~~v~~G~g~~~v~~~-----~~~~~~GD~~~vP~  320 (354)
T 2d40_A          249 DGYKMRYVNPVTGGYPMPSM--GAFLQLLPKGFASRVARTTD-STIYHVVEGSGQVIIGNE-----TFSFSAKDIFVVPT  320 (354)
T ss_dssp             TBEEEEECCTTTSSCSSSSC--EEEEEEECTTCBCCCBEESS-CEEEEEEEEEEEEEETTE-----EEEEETTCEEEECT
T ss_pred             CCeEEEEeCCCcCCCCCCcc--eeEEEEECCCCCCCceecCC-cEEEEEEeCeEEEEECCE-----EEEEcCCCEEEECC
Confidence            46677777743 56666654  55567999999999999998 599999999999999765     89999999999999


Q ss_pred             CCeEEEEecCCccEEEEEEEc
Q 027585          156 GLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       156 g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      +..|++.|.  ++++++++.+
T Consensus       321 ~~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          321 WHGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             TCCEEEEEE--EEEEEEEEES
T ss_pred             CCeEEEEeC--CCEEEEEEcC
Confidence            999999993  7788887754

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.13  E-value=2.1e-10  Score=96.22  Aligned_cols=74  Identities=8%  Similarity=-0.047  Sum_probs=67.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +..+.++.++||...++|.|+. +|++||++|++++.++++     ++.|++||++++|+|.+|.+.|.  ++++++.+.
T Consensus        36 ~~~~~~~~~~~G~~~~~h~h~~-~~~~~Vl~G~~~~~i~~~-----~~~l~~Gd~~~~p~~~~H~~~a~--~~~~~l~i~  107 (227)
T 3rns_A           36 NSYISLFSLAKDEEITAEAMLG-NRYYYCFNGNGEIFIENN-----KKTISNGDFLEITANHNYSIEAR--DNLKLIEIG  107 (227)
T ss_dssp             SEEEEEEEECTTCEEEECSCSS-CEEEEEEESEEEEEESSC-----EEEEETTEEEEECSSCCEEEEES--SSEEEEEEE
T ss_pred             CcEEEEEEECCCCccCccccCC-CEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEEC--CCcEEEEEE
Confidence            4678999999999999999997 999999999999999887     89999999999999999999985  468888876


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      ..
T Consensus       108 ~~  109 (227)
T 3rns_A          108 EK  109 (227)
T ss_dssp             EC
T ss_pred             ee
Confidence            54

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=99.12  E-value=1.3e-10  Score=92.38  Aligned_cols=74  Identities=16%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..++++ ++.  .|||...+|+.||++|++++.++++     ++.|++||+++||+|..|++.|.  ++++++++.
T Consensus        65 ~~s~g~~~~e-~~~--~~~~~~~eE~~yVLeG~~~l~i~g~-----~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~  134 (151)
T 4axo_A           65 RLGCGMMEMK-ETT--FDWTLNYDEIDYVIDGTLDIIIDGR-----KVSASSGELIFIPKGSKIQFSVP--DYARFIYVT  134 (151)
T ss_dssp             SCEEEEEEEE-EEE--EEEECSSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEEc-Ccc--ccEeCCCcEEEEEEEeEEEEEECCE-----EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            3667777776 433  4566666999999999999998666     89999999999999999999997  789999888


Q ss_pred             cCCC
Q 027585          176 NSHL  179 (221)
Q Consensus       176 ~s~~  179 (221)
                      ....
T Consensus       135 ~P~~  138 (151)
T 4axo_A          135 YPAD  138 (151)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            6543

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.12  E-value=4.3e-10  Score=97.03  Aligned_cols=77  Identities=12%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             ccceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPP-HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      ...+.+.+++++||+..+. |.|.. +|.+||++|++.+.++++     .+.+++||+++++++.+|++.|.|++++++|
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H~~-eh~~~vL~G~g~y~l~~~-----~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVHYN-QHGLLLLEGQGIYRLGDN-----WYPVQAGDVIWMAPFVPQWYAALGKTRSRYL  256 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCCSC-CEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEccc-ceEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            4468899999999999996 77765 899999999999999887     9999999999999999999999999999988


Q ss_pred             EEEc
Q 027585          173 TAFN  176 (221)
Q Consensus       173 ~~~~  176 (221)
                      .--+
T Consensus       257 ~ykd  260 (266)
T 4e2q_A          257 LYKD  260 (266)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            6543

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.10  E-value=2.3e-10  Score=95.69  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+..+.++||...|+|.|+. +|+.||++|++++.++ ++     .+.+++||++++|+|.+|..+ .+++|+.++.
T Consensus       130 ~~l~lG~v~l~PG~~yP~HsHp~-EEiy~VLsG~~e~~v~~g~-----~~~l~pGd~v~ipsgv~Ha~r-t~dePllalw  202 (217)
T 4b29_A          130 QSLRVTVGYWGPGLDYGWHEHLP-EELYSVVSGRALFHLRNAP-----DLMLEPGQTRFHPANAPHAMT-TLTDPILTLV  202 (217)
T ss_dssp             SSCEEEEEEECSSCEEEEEECSS-EEEEEEEEECEEEEETTSC-----CEEECTTCEEEECTTCCEEEE-CCSSCEEEEE
T ss_pred             CeEEEEEEEECCCCcCCCCCCCC-ceEEEEEeCCEEEEECCCC-----EEecCCCCEEEcCCCCceeEE-ECCccEEEEE
Confidence            35889999999999999999996 9999999999999998 44     899999999999999999998 4889998888


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      +...
T Consensus       203 vW~G  206 (217)
T 4b29_A          203 LWRG  206 (217)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            7754

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.07  E-value=1.4e-09  Score=98.65  Aligned_cols=92  Identities=20%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             CeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCC
Q 027585           78 GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGL  157 (221)
Q Consensus        78 g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~  157 (221)
                      +..+...+... .+-....+.+....++||+..++|.|.. .|++||++|++++.++++     ++.+++||++++|+|.
T Consensus       276 ~~~l~l~nP~~-g~~~~~tl~~~~~~l~PG~~~~~HrH~~-~~v~~VleG~G~~~V~ge-----~~~~~~GD~~~iP~g~  348 (394)
T 3bu7_A          276 GLILRYTNPQT-GGHPMLTMGASMQMLRPGEHTKAHRHTG-NVIYNVAKGQGYSIVGGK-----RFDWSEHDIFCVPAWT  348 (394)
T ss_dssp             BEEEEECCTTT-SSCSSSSCEEEEEEECTTCBCCCEEESS-CEEEEEEECCEEEEETTE-----EEEECTTCEEEECTTC
T ss_pred             ceEEEEeCCCC-CCCCCCeeeEEEEEECCCCcCCCcccCC-cEEEEEEeCeEEEEECCE-----EEEEeCCCEEEECCCC
Confidence            44455555432 2222334778889999999999999996 799999999999998776     9999999999999999


Q ss_pred             eEEEEecC-CccEEEEEEEc
Q 027585          158 IHFQQNVG-EGKALAFTAFN  176 (221)
Q Consensus       158 ~H~~~N~g-~~~a~~l~~~~  176 (221)
                      .|.+.|.| +++++++++.+
T Consensus       349 ~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          349 WHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             CEEEEECCSSCCEEEEEEES
T ss_pred             eEEeEeCCCCCCeEEEEeeC
Confidence            99999998 79999888854

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.04  E-value=8.1e-10  Score=100.19  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=69.3

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEE-EEEecCCeEEEEEecCCcEEEECCCCeEEEEe-cCCccEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLV-GFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN-VGEGKALA  171 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v-~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N-~g~~~a~~  171 (221)
                      +..+.+....+.||+..++|.|.. .|+.||++|++.+ .++++     ++.+++||++++|+|..|...| .|++++++
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~IleG~G~~t~v~G~-----~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~  193 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIVDGH-----KVELGANDFVLTPNGTWHEHGILESGTECIW  193 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTCCCEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCc-ceEEEEEEeeEEEEEECCE-----EEEEcCCCEEEECcCCCEEEEcCCCCCCEEE
Confidence            446888999999999999999987 7999999999976 55554     8999999999999999999999 99999999


Q ss_pred             EEEEc
Q 027585          172 FTAFN  176 (221)
Q Consensus       172 l~~~~  176 (221)
                      +++.+
T Consensus       194 l~v~d  198 (394)
T 3bu7_A          194 QDGLD  198 (394)
T ss_dssp             EEEEC
T ss_pred             EEccc
Confidence            98764

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=99.03  E-value=2.8e-09  Score=87.71  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             EEEEEEEcCCCc----------CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           98 SMNRVDFAPGGL----------NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        98 s~~~v~l~Pgg~----------~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      +...+.+.|+..          .++|+|+. .|+.||++|++.+.+.+.+++.+...+++||++++|+|+.|++.+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            455566777752          38999998 9999999999999999865666678999999999999999999987777


Q ss_pred             cEEEEEEEcCCCCeee
Q 027585          168 KALAFTAFNSHLPGAV  183 (221)
Q Consensus       168 ~a~~l~~~~s~~pg~~  183 (221)
                      ....+-+|..+ |+..
T Consensus       154 ~~~airlF~~~-~~W~  168 (191)
T 1vr3_A          154 YVKAMRLFVGE-PVWT  168 (191)
T ss_dssp             CEEEEEEESSS-CCCC
T ss_pred             CEEEEEEECCC-CCcc
Confidence            78888888644 5544

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.03  E-value=3.5e-10  Score=101.68  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEE-EEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLL-VGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~-v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+....+.||+..++|.|.. +|+.||++|++. +.++++     +..+++||++++|+|..|...|.|+++++++.
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~~-~ev~~VleG~G~~~~vdG~-----~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~  174 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHSQ-NAFRFVVEGEGVWTVVNGD-----PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID  174 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESS-CEEEECSSCEEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCCccCceeccc-ceEEEEEecceEEEEECCE-----EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEE
Confidence            45889999999999999999986 899999999995 666665     99999999999999999999999999999999


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      +.+.
T Consensus       175 v~D~  178 (368)
T 3nw4_A          175 GLDI  178 (368)
T ss_dssp             EECH
T ss_pred             ecch
Confidence            8753

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.99  E-value=6e-10  Score=82.58  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEE
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL  170 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~  170 (221)
                      .....||.. ++| |+. .|++||++|++++.++ ++     .+.|++||+++||+|.+|.+.|.++....
T Consensus        35 ~~~~~pg~~-~~h-H~~-~E~~~Vl~G~~~~~i~~g~-----~~~l~~GD~i~ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           35 IWEKEVSEF-DWY-YDT-NETCYILEGKVEVTTEDGK-----KYVIEKGDLVTFPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             EEEECSEEE-EEE-CSS-CEEEEEEEEEEEEEETTCC-----EEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEEeCCCcc-ccc-CCc-eEEEEEEeCEEEEEECCCC-----EEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence            456777753 356 665 9999999999999997 66     89999999999999999999997664433

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.97  E-value=1.8e-09  Score=91.63  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.+.+++++||+....|+   .+|++||++|++++.++++     ++.|++||+++||++.+|.++|.  ++++++++.
T Consensus        49 ~~~~~~~~l~Pg~~~~~~~---~ee~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v~  118 (246)
T 1sfn_A           49 RFVQFTAEMPAGAQATESV---YQRFAFVLSGEVDVAVGGE-----TRTLREYDYVYLPAGEKHMLTAK--TDARVSVFE  118 (246)
T ss_dssp             SSEEEEEEECTTCEEECCS---SEEEEEEEEEEEEEECSSC-----EEEECTTEEEEECTTCCCEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCCCc---eeEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeC--CCEEEEEEE
Confidence            5788999999999877775   5999999999999999887     99999999999999999999998  788888876


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      .
T Consensus       119 ~  119 (246)
T 1sfn_A          119 K  119 (246)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.92  E-value=1.5e-09  Score=83.20  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEE-EecCCeEEEEEecCCcEEEECCCCeEEEEecCCcc
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGF-FTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~-~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~  168 (221)
                      .+++...+..||... +|+|.. +|++||++|++++.+ +++     .+.|++||++++|+|..|.+.|.++..
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~~-~E~~~Vl~G~~~l~~~~g~-----~~~l~~GD~~~ip~g~~h~~~~~~~~r  114 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTGY-IEYCHIIEGEARLVDPDGT-----VHAVKAGDAFIMPEGYTGRWEVDRHVK  114 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTTE-EEEEEEEEEEEEEECTTCC-----EEEEETTCEEEECTTCCCEEEEEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCCC-cEEEEEEEEEEEEEECCCe-----EEEECCCCEEEECCCCeEEEEECCcee
Confidence            367888888898654 577754 899999999999998 444     799999999999999999999975543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.82  E-value=8.5e-09  Score=82.45  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec--CCccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV--GEGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~--g~~~a~~l~  173 (221)
                      +..+.+++++||+..+.|+|++ .|.+||++|+.++.   ++    ...+++||.++.|+|..|...+.  ++++++++.
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~---e~----~~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~  112 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRYK---EH----DWVAHAGSVVYETASTRHTPQSAYAEGPDIITFN  112 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEET---TS----SCCBCTTCEEEECSSEEECEEESSSSSSCEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEEe---CC----CeEECCCeEEEECCCCcceeEeCCCCCCCEEEEE
Confidence            4567889999999999999998 88899999998752   22    24899999999999999999998  778998888


Q ss_pred             EEcCC
Q 027585          174 AFNSH  178 (221)
Q Consensus       174 ~~~s~  178 (221)
                      +.+.+
T Consensus       113 ~~~G~  117 (159)
T 3ebr_A          113 IVAGE  117 (159)
T ss_dssp             EEESC
T ss_pred             EecCc
Confidence            65544

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.82  E-value=2.4e-08  Score=89.00  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             ceEEEEEEEcCC---CcCCCCCCCCCcEEEEEEeCEEEEEEEe-cCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEE
Q 027585           96 GISMNRVDFAPG---GLNPPHSHPRASESGIVIKGKLLVGFFT-TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus        96 gis~~~v~l~Pg---g~~~~H~Hp~a~Ei~yVl~G~~~v~~~~-~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      .+++..+++.++   +..+.|.|+. +|++||++|++++++++ +     .+.|++||++++|+|.+|.+.|.++. +.+
T Consensus       248 ~f~~~~i~~~~~~~g~~~~~h~~~~-~~~~~vleG~~~i~i~g~~-----~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~  320 (350)
T 1juh_A          248 NYTLSTISMSTTPSTVTVPTWSFPG-ACAFQVQEGRVVVQIGDYA-----ATELGSGDVAFIPGGVEFKYYSEAYF-SKV  320 (350)
T ss_dssp             CEEEEEEEECCCCTTSCCCCBCCSS-CEEEEEEESCEEEEETTSC-----CEEECTTCEEEECTTCCEEEEESSSS-EEE
T ss_pred             EEEEEEEeeccccCCCCCCcccCCC-cEEEEEEeeEEEEEECCeE-----EEEeCCCCEEEECCCCCEEEEecCCe-EEE
Confidence            478888888884   4678898987 99999999999999988 6     89999999999999999999998654 677


Q ss_pred             EEEEcC
Q 027585          172 FTAFNS  177 (221)
Q Consensus       172 l~~~~s  177 (221)
                      +.+.+.
T Consensus       321 l~~~~g  326 (350)
T 1juh_A          321 LFVSSG  326 (350)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            766654

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.79  E-value=3.1e-09  Score=83.47  Aligned_cols=77  Identities=16%  Similarity=-0.027  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEE-EEecCCccEEEEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHF-QQNVGEGKALAFTAF  175 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~-~~N~g~~~a~~l~~~  175 (221)
                      -.+.+++++||+..+.|+|++ .|.+||++|+++...++.   ...+++++||.+++|+|..|. ..+  .+.++++.++
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~~g~~---~~~~~~~~Gd~~~~p~g~~H~p~~~--~e~~~~l~~~  117 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVRGGKA---AGGDTAIAPGYGYESANARHDKTEF--PVASEFYMSF  117 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEETTCGG---GTSEEEESSEEEEECTTCEESCCEE--EEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEcCCCE---ecceEeCCCEEEEECcCCccCCeEC--CCCeEEEEEE
Confidence            357789999999999999997 677999999999653332   013799999999999999999 443  4557777777


Q ss_pred             cCCC
Q 027585          176 NSHL  179 (221)
Q Consensus       176 ~s~~  179 (221)
                      +.+.
T Consensus       118 ~gp~  121 (145)
T 2o1q_A          118 LGPL  121 (145)
T ss_dssp             ESCE
T ss_pred             CCcc
Confidence            6554

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.79  E-value=4.1e-09  Score=85.94  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeee
Q 027585          110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAV  183 (221)
Q Consensus       110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~  183 (221)
                      .++|+|+. .|+.||++|++++.+. .+++.+...+++||++++|+|+.|++.+..+.....+-+|..+ |+..
T Consensus        93 ~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~-~~w~  163 (179)
T 1zrr_A           93 LNEHTHGE-DEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP-EGWI  163 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG-GGEE
T ss_pred             ccceECCh-heEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC-CCcc
Confidence            57999997 9999999999999886 2355556779999999999999999988766667777777654 5543

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.77  E-value=1.9e-08  Score=81.65  Aligned_cols=80  Identities=25%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             eEEEEEEEcCCCcCCCCCCCC------CcEEEEEEeCEEEEEEEecCCe----------------EEEEEecCCcEEEEC
Q 027585           97 ISMNRVDFAPGGLNPPHSHPR------ASESGIVIKGKLLVGFFTTNNV----------------FYSKVLSAGEMFVIP  154 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~------a~Ei~yVl~G~~~v~~~~~~~~----------------~~~~~L~~GDv~~~P  154 (221)
                      ....++.+.||+..|.|.|+.      -.|-++|++|.+++.+.++.-.                -....|++||++.+|
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIp  132 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIP  132 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEEC
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEEC
Confidence            567888999999999999998      8999999999999988653100                024699999999999


Q ss_pred             CCCeEEEEecCCccEEEEEEEcCC
Q 027585          155 RGLIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      +|..|+++| +.+.+. +.-+++.
T Consensus       133 pg~~H~f~a-geegvl-i~EvSt~  154 (175)
T 2y0o_A          133 PNTKHWFQA-GEEGAV-VTEMSST  154 (175)
T ss_dssp             TTCCEEEEE-EEEEEE-EEEEEEC
T ss_pred             CCCcEEEEe-CCCCEE-EEEEeCC
Confidence            999999999 444444 4444433

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=98.74  E-value=8.5e-08  Score=70.06  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCC-CCeeeeccc---hhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          141 YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSH-LPGAVIVPT---TLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       141 ~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~-~pg~~~~~~---~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      ....|++||+++||+|.+-...+..  ...++++-++. ++....++.   +++..   ||.++++.+|+++.+++++|+
T Consensus         6 ~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~~---l~~evla~aF~~s~ee~~~l~   80 (93)
T 1dgw_Y            6 YAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIRQ---IPRQVSDLTFPGSGEEVEELL   80 (93)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTTT---SCHHHHHHHSSSCTHHHHHHT
T ss_pred             hhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHHh---CCHHHHHHHcCCCHHHHHHHH
Confidence            4678999999999999999999964  49999985555 888888864   88886   999999999999999999997


Q ss_pred             hh
Q 027585          217 SK  218 (221)
Q Consensus       217 ~~  218 (221)
                      ..
T Consensus        81 ~~   82 (93)
T 1dgw_Y           81 EN   82 (93)
T ss_dssp             TS
T ss_pred             hc
Confidence            54

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.73  E-value=8.3e-08  Score=77.38  Aligned_cols=61  Identities=18%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG  165 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g  165 (221)
                      .-.|++...+|.|+. +|++||++|++++.+.+. |+.....|++||++++|+|++|+-...+
T Consensus        41 v~Gpn~r~d~H~h~~-dE~FyvlkG~m~i~v~d~-g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           41 VGGPNHRTDYHDDPL-EEFFYQLRGNAYLNLWVD-GRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             ECSCBCCCCEEECSS-CEEEEEEESCEEEEEEET-TEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             EcCCCcCccCcCCCC-ceEEEEEeeEEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCccccC
Confidence            346788899998865 999999999999999873 5556899999999999999999987754

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.73  E-value=1.9e-08  Score=80.94  Aligned_cols=75  Identities=25%  Similarity=0.306  Sum_probs=61.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC--CccEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG--EGKALAFT  173 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g--~~~a~~l~  173 (221)
                      +..+.+++++||+..++|+|++ .|.+|||+|++...   ..+   .+.+++||.++.|+|..|...+..  +++++.+.
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~f~~~---~~~---~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~  114 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTG-TVHMYTISGCWYYT---EYP---GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIF  114 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESS-CEEEEEEESEEEET---TCT---TSCEETTEEEEECTTCEECEECCTTCSSCEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCC-CEEEEEEEEEEEEC---CCc---eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEE
Confidence            4567889999999999999998 99999999999863   211   367899999999999999998864  34787777


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      +...
T Consensus       115 v~~G  118 (165)
T 3cjx_A          115 MLSG  118 (165)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            6553

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.71  E-value=2e-07  Score=75.35  Aligned_cols=86  Identities=20%  Similarity=0.385  Sum_probs=73.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec-CCe---EEEEEecCCcEEEECCCCeEEEEecCCccEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT-NNV---FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~-~~~---~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      ++++..+...||...++|-|.++..++.|++|+++..+... +++   ..+..+.+||++++|++.+|++.|.++++++-
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            46789999999999999999988899999999999876432 231   23678999999999999999999999999999


Q ss_pred             EEEEcCCCCe
Q 027585          172 FTAFNSHLPG  181 (221)
Q Consensus       172 l~~~~s~~pg  181 (221)
                      +-+++.+..+
T Consensus       148 lHvY~pp~~~  157 (171)
T 3eqe_A          148 LHVYSPPLED  157 (171)
T ss_dssp             EEEEESCCCC
T ss_pred             EEEeCCCccc
Confidence            9999877653

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.59  E-value=4.1e-07  Score=70.55  Aligned_cols=61  Identities=18%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC-ccEEEEEEEcC
Q 027585          111 PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE-GKALAFTAFNS  177 (221)
Q Consensus       111 ~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~-~~a~~l~~~~s  177 (221)
                      .+|.|+. -|++||++|++++.++++     .+.+++||++++|+|.+|.+.+.++ ++...+++.-+
T Consensus        32 ~p~~h~~-~~i~~v~~G~~~~~i~~~-----~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f~   93 (164)
T 2arc_A           32 RPLGMKG-YILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (164)
T ss_dssp             ETTCCSS-EEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             cccCCCc-eEEEEEEEeEEEEEECCE-----EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEEC
Confidence            4788986 999999999999999887     9999999999999999999998763 66666665433

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.58  E-value=1.2e-07  Score=73.80  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             CCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC---CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585          106 PGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       106 Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      +++...+|.|++.+|+++|++|++++.+.+..   .+-....|++|+++++|+|+.|.....  +.++++.+=.
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~--~e~~vLLiEp  109 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQ--KDTKMMYVQD  109 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEEC--TTCEEEEEEE
T ss_pred             cccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCC--CceEEEEEEe
Confidence            34567889999999999999999999998531   122378999999999999999999874  4455555443

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.53  E-value=4e-07  Score=81.80  Aligned_cols=89  Identities=19%  Similarity=0.109  Sum_probs=71.2

Q ss_pred             Cee-EEEeeccc-cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC
Q 027585           78 GSA-VTPANVLA-FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR  155 (221)
Q Consensus        78 g~~-v~~~~~~~-fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~  155 (221)
                      |.. +...+... -+...+  |.+....+.||...++|.|.. +++++|++|++++.++++     ++..++||+|++|+
T Consensus       260 g~~~~~y~NP~tg~~~~pt--i~~~~~~L~pG~~t~~hRht~-s~Vy~V~eG~G~~~I~~~-----~~~w~~gD~fvvP~  331 (368)
T 3nw4_A          260 GHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEVG-STVFQVFEGAGAVVMNGE-----TTKLEKGDMFVVPS  331 (368)
T ss_dssp             TEEEEECBCTTTSSBSSSS--CEEEEEEECTTCBCCCEEESS-CEEEEEEESCEEEEETTE-----EEEECTTCEEEECT
T ss_pred             ceEEEEEeCCCCCCCcchh--HHhheEEECCCCccCCeeccc-cEEEEEEeCcEEEEECCE-----EEEecCCCEEEECC
Confidence            555 55555332 223343  567778899999999999986 899999999999999887     99999999999999


Q ss_pred             CCeEEEEecCCccEEEEEEEc
Q 027585          156 GLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       156 g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      +..|...|.  +++.++++-+
T Consensus       332 w~~h~~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          332 WVPWSLQAE--TQFDLFRFSD  350 (368)
T ss_dssp             TCCEEEEES--SSEEEEEEES
T ss_pred             CCcEEEEeC--CCEEEEEEeC
Confidence            999999996  5777776543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.51  E-value=5e-07  Score=79.49  Aligned_cols=84  Identities=23%  Similarity=0.291  Sum_probs=67.1

Q ss_pred             EEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-CeEEEEEecC-C---cEEEECCCCeEEEEecCCccEEEE
Q 027585           98 SMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-NVFYSKVLSA-G---EMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~-G---Dv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .....+..||....+|||....|.++|++|++.+.+.+.. ++  .+.++. |   +.+++|+|..|.+.|.|+++++++
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~  350 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDE--IIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTI  350 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCC--CEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCc--EEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEE
Confidence            3455678999999999999889999999999999887543 45  445555 6   999999999999999998999888


Q ss_pred             EEE----cCCCCeee
Q 027585          173 TAF----NSHLPGAV  183 (221)
Q Consensus       173 ~~~----~s~~pg~~  183 (221)
                      ...    +.++|.++
T Consensus       351 ~~~~~~y~~~~~d~~  365 (369)
T 3st7_A          351 MWVNEMFDPNQPDTY  365 (369)
T ss_dssp             EEESSCCCSSSCCCE
T ss_pred             EecCcccCCCCCccc
Confidence            754    34445544

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.48  E-value=1.3e-06  Score=72.66  Aligned_cols=83  Identities=17%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec--CCeE----EEEEecCCcEEEECC--CCeEEEEec-CC
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT--NNVF----YSKVLSAGEMFVIPR--GLIHFQQNV-GE  166 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~--~~~~----~~~~L~~GDv~~~P~--g~~H~~~N~-g~  166 (221)
                      .+++..+...||...++|-|.. ..+++|++|+++..+-..  +|+.    .+.++++||+.+++.  |.+|.+.|. ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            3678899999999999999997 999999999998876432  2321    268999999999999  999999998 78


Q ss_pred             ccEEEEEEEcCCC
Q 027585          167 GKALAFTAFNSHL  179 (221)
Q Consensus       167 ~~a~~l~~~~s~~  179 (221)
                      ++++.|-+|....
T Consensus       157 ~~avsLHvY~~~~  169 (208)
T 2gm6_A          157 RVSISIHVYGANI  169 (208)
T ss_dssp             SCEEEEEEESSCG
T ss_pred             CcEEEEEEEcCCC
Confidence            8999999886543

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.46  E-value=1.3e-06  Score=70.30  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=50.9

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC----eEEEEEecCCcEEEECCCCeEEEEec
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN----VFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      .-.|+....+|.|+ .+|++|+++|++.+.+.++ |    +.....|++||++++|+|++|+-...
T Consensus        40 vgGPn~r~D~H~~~-~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           40 VGGPNERTDYHINP-TPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             ECSSBCCSCEEECS-SCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             EcCCCcCCcCcCCC-CceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            34566789999555 5999999999999999984 4    45689999999999999999998664

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.41  E-value=8.4e-07  Score=74.50  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=60.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +.....++++||...++|+|++ .|.+||++|++.    ++     ...+.+||.++.|+|..|....  ++.|.++...
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~g-~Ee~~VL~G~f~----d~-----~~~~~~Gd~~~~P~g~~H~p~a--~~gc~~~vk~  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHDG-GEEFIVLDGVFQ----DE-----HGDYPAGTYVRNPPTTSHVPGS--AEGCTIFVKL  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECTT-CEEEEEEEEEEE----ET-----TEEEETTEEEEECTTCEECCEE--SSCEEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCCC-CEEEEEEEeEEE----EC-----CeEECCCeEEEeCCCCccccEe--CCCCEEEEEe
Confidence            3456788999999999999997 899999999976    34     5689999999999999998876  5678888877


Q ss_pred             cCCC
Q 027585          176 NSHL  179 (221)
Q Consensus       176 ~s~~  179 (221)
                      ..=.
T Consensus       110 ~~~~  113 (223)
T 3o14_A          110 WQFD  113 (223)
T ss_dssp             SCSC
T ss_pred             cCCC
Confidence            5433

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.34  E-value=2.8e-06  Score=73.24  Aligned_cols=67  Identities=16%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          105 APGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .|+....+| |+..+|++|+++|.+++.+.+ +|+.....+++||++++|+|++|.-....  .++.+.+=
T Consensus        39 GpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP~gv~HsP~r~~--et~gLviE  105 (286)
T 2qnk_A           39 GPNTRKDYH-IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLPARVPHSPQRFA--NTVGLVVE  105 (286)
T ss_dssp             SCBCCCCEE-ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEECTTCCEEEEECT--TCEEEEEE
T ss_pred             CCCcCccCc-CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeCCCCCcCCcccC--CeEEEEEe
Confidence            466678999 998999999999999999998 46667899999999999999999998744  34444443

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=98.33  E-value=1.2e-05  Score=66.46  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=72.6

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec--CC-----eEEEEEecCCcEEEE-CCCCeEEEEecC-Cc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT--NN-----VFYSKVLSAGEMFVI-PRGLIHFQQNVG-EG  167 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~--~~-----~~~~~~L~~GDv~~~-P~g~~H~~~N~g-~~  167 (221)
                      +++..+...||...++|-|.++..+++|++|+++...-+.  ++     ...+.++++||+.++ |++.+|.+.|.+ ++
T Consensus        70 ~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~~  149 (200)
T 3eln_A           70 FNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTE  149 (200)
T ss_dssp             CEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSSC
T ss_pred             eEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCCC
Confidence            6788899999999999999988999999999999886432  11     123689999999999 888899999998 78


Q ss_pred             cEEEEEEEcCCCCee
Q 027585          168 KALAFTAFNSHLPGA  182 (221)
Q Consensus       168 ~a~~l~~~~s~~pg~  182 (221)
                      +++-|=+|..+..+.
T Consensus       150 ~avSlHvY~pp~~~~  164 (200)
T 3eln_A          150 PAVSLHLYSPPFDTC  164 (200)
T ss_dssp             CEEEEEEEESCCSEE
T ss_pred             CEEEEEeCCCCccce
Confidence            999999998776653

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.30  E-value=7.4e-07  Score=70.76  Aligned_cols=93  Identities=14%  Similarity=-0.009  Sum_probs=66.4

Q ss_pred             cCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC
Q 027585           76 IFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR  155 (221)
Q Consensus        76 ~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~  155 (221)
                      ..|..++.+...  |   ..|-...+++++||+..++|+|++ .|.+|||+|+.....++.   .....+++|+.++.|+
T Consensus        30 ~~Gv~~k~L~~~--~---e~g~~t~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~~Gd~---~~~~~~~aGsYv~ePp  100 (153)
T 3bal_A           30 DGGITWQLLHSS--P---ETSSWTAIFNCPAGSSFASHIHAG-PGEYFLTKGKMEVRGGEQ---EGGSTAYAPSYGFESS  100 (153)
T ss_dssp             ESCCEEEEEEEE--T---TTTEEEEEEEECTTEEECCEEESS-CEEEEEEESEEEETTCGG---GTSEEEESSEEEEECT
T ss_pred             CCCeEEEEEEEC--C---ccceEEEEEEeCCCCCccCccCCC-CEEEEEEEEEEEecCccc---cCccccCCCeEEEcCC
Confidence            345566665322  2   235678899999999999999998 888999999998754432   0157889999999999


Q ss_pred             CCeEEEEecCCccEEEEEEEcCC
Q 027585          156 GLIHFQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       156 g~~H~~~N~g~~~a~~l~~~~s~  178 (221)
                      |..|..... ++..+++.+...+
T Consensus       101 Gs~H~p~~~-~~~~~~~~~~~Gp  122 (153)
T 3bal_A          101 GALHGKTFF-PVESQFYMTFLGP  122 (153)
T ss_dssp             TCEESCCEE-SSCEEEEEEEESC
T ss_pred             CCcccceeC-CCCeEEEEEEECC
Confidence            999985432 3344555555433

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.12  E-value=1.7e-05  Score=67.19  Aligned_cols=72  Identities=31%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++++..+.+ .|..... .++. +|++||++|++++...++     ..++++||+++||+|..|.+...+.. -.+++.+
T Consensus        46 ~~~~G~~~~-~g~~~v~-~~p~-dE~~~VleG~~~lt~~g~-----~~~~~~Gd~~~ip~G~~~~w~~~~~~-~~~y~~~  116 (238)
T 3myx_A           46 GIAAGIVEF-GTALSVE-AYPY-TEMLVMHRGSVTLTSGTD-----SVTLSTGESAVIGRGTQVRIDAQPES-LWAFCAS  116 (238)
T ss_dssp             SEEEEEEEE-CSEEEES-SCSS-EEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECTTE-EEEEEEE
T ss_pred             CeEEEEEEe-ccccccc-cCCC-cEEEEEEEeEEEEECCCe-----EEEEcCCCEEEECCCCEEEEEecCCe-EEEEEec
Confidence            477777777 5443322 2333 899999999999987443     89999999999999999999986554 3455566


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      .
T Consensus       117 ~  117 (238)
T 3myx_A          117 T  117 (238)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=98.03  E-value=5.9e-05  Score=58.92  Aligned_cols=97  Identities=9%  Similarity=0.008  Sum_probs=68.3

Q ss_pred             CCeeEEEeec-cccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCc-EEEEC
Q 027585           77 FGSAVTPANV-LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGE-MFVIP  154 (221)
Q Consensus        77 ~g~~v~~~~~-~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GD-v~~~P  154 (221)
                      ..|.++.+.. ...|.-- .. .......+||....||.|....|++++++|++.+.+.+... ..++.|.+.. .+.+|
T Consensus        16 ~RG~L~~~e~~~~ipf~i-kR-vy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~-~~~~~L~~~~~gL~Ip   92 (141)
T 2pa7_A           16 SRGSLVAIEENKNIPFSI-KR-VYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNI-IQEITLDSPAVGLYVG   92 (141)
T ss_dssp             TTEEEEEEETTTTSSSCC-CE-EEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSC-EEEEEECCTTEEEEEC
T ss_pred             CCCcEEEEeccCCCCCCc-cE-EEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcE-EEEEEECCCCcEEEeC
Confidence            3556666654 4444421 11 22334456888999999999999999999999999966422 3456666554 59999


Q ss_pred             CCCeEEEEecCCccEEEEEEEcC
Q 027585          155 RGLIHFQQNVGEGKALAFTAFNS  177 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~~~s  177 (221)
                      +|+.|.+.+.++. ++++.+-+.
T Consensus        93 pgvWh~~~~~s~~-avllvlas~  114 (141)
T 2pa7_A           93 PAVWHEMHDFSSD-CVMMVLASD  114 (141)
T ss_dssp             TTCEEEEECCCTT-CEEEEEESS
T ss_pred             CCEEEEEEEcCCC-eEEEEECCC
Confidence            9999999999875 666665543

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.96  E-value=0.00017  Score=59.99  Aligned_cols=84  Identities=14%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec--CCeEE----EEEecCCcEEEECCC--CeEEEEec-CC
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT--NNVFY----SKVLSAGEMFVIPRG--LIHFQQNV-GE  166 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~--~~~~~----~~~L~~GDv~~~P~g--~~H~~~N~-g~  166 (221)
                      .+++..+...||...++|-|. +.-++.|++|+++-.+-..  +|+..    ...+.+||+.+++++  .+|.+.|. ++
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            367888999999999999999 7999999999998876432  23311    478999999999987  89999998 47


Q ss_pred             ccEEEEEEEcCCCC
Q 027585          167 GKALAFTAFNSHLP  180 (221)
Q Consensus       167 ~~a~~l~~~~s~~p  180 (221)
                      ++++-|=+|..+..
T Consensus       151 ~~avSLHvYg~pl~  164 (211)
T 3uss_A          151 RTSISIHVYGANIG  164 (211)
T ss_dssp             SCEEEEEEESSCGG
T ss_pred             CCEEEEEEcCCCCC
Confidence            88998888876653

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.80  E-value=6.8e-05  Score=56.71  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      ......+..||... ++.+.. +|++|||+|++++...+  |.  ..++++||+++||+|..-.+.-.
T Consensus        42 ~~~GvWe~tPG~~~-~~~~~~-~E~~~iLeG~~~lt~dd--G~--~~~l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           42 TIVAVWMAEPGIYN-YAGRDL-EETFVVVEGEALYSQAD--AD--PVKIGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             CEEEEEEECSEEEE-ECCCSE-EEEEEEEECCEEEEETT--CC--CEEECTTEEEEECTTCCEEEEEC
T ss_pred             EEEEEEecCCceeE-CeeCCC-cEEEEEEEeEEEEEeCC--Ce--EEEECCCCEEEECCCCeEEEEEe
Confidence            45556678888643 333332 59999999999998764  33  78999999999999999998764

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.71  E-value=0.00029  Score=56.82  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC------CeEEEEEec---CCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN------NVFYSKVLS---AGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~---~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ...+|....+|+|..-.++++|++|++...++|--      |+.....|.   ....++||+|..|.+.+.++++++++.
T Consensus        59 ~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly  138 (174)
T 3ejk_A           59 EVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVAN  138 (174)
T ss_dssp             EECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEE
T ss_pred             ECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEE
Confidence            34788889999998779999999999999987632      456788888   567999999999999999887777666


Q ss_pred             EEc
Q 027585          174 AFN  176 (221)
Q Consensus       174 ~~~  176 (221)
                      ..+
T Consensus       139 ~~s  141 (174)
T 3ejk_A          139 CTD  141 (174)
T ss_dssp             EES
T ss_pred             ECC
Confidence            544

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.69  E-value=0.00066  Score=54.53  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             ccCCeeEEEeeccccC-CCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCCeEEEEE----ecCC
Q 027585           75 TIFGSAVTPANVLAFP-GVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNNVFYSKV----LSAG  148 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP-~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~----L~~G  148 (221)
                      .|.||..+....+.-+ .-.....+....-+.+|....||... ++|+.+...|. +++.+.+++|+..+.+    +.+|
T Consensus        26 HPEGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv~-sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~G  104 (170)
T 1yud_A           26 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLT-ADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG  104 (170)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEECS-SCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEcC-CCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccC
Confidence            4677777766654311 11222346777788999988888875 79999999998 5888888777755555    6779


Q ss_pred             cE--EEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027585          149 EM--FVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTI  215 (221)
Q Consensus       149 Dv--~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l  215 (221)
                      +.  ++||+|..+..++.+.+.+.+-++..   ||+..-...+      .+.+-|.+.|---.+.|++|
T Consensus       105 e~pQ~vVP~G~wqaa~~~~g~~~LV~C~Va---PGF~f~dfel------~~~~~L~~~~P~~~~~I~~l  164 (170)
T 1yud_A          105 ERPQFLVPKGCIFGSAMNQDGFSLVGCMVS---PGFTFDDFEL------FSQEALLAMYPQHKAVVQKL  164 (170)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEES---SCCCGGGCCB------CBHHHHHHSCCTTHHHHTTS
T ss_pred             ceeEEEECCCCEEEEEECCCCcEEEEEEEC---CCccCCceEE------cCHHHHHhHCchhHHHHHHh
Confidence            98  99999999999998335555555543   5543332222      34455555565555555544

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.52  E-value=0.00039  Score=58.51  Aligned_cols=75  Identities=7%  Similarity=-0.102  Sum_probs=55.2

Q ss_pred             ceEEEEEEEcCCC--cCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec--CCccEEE
Q 027585           96 GISMNRVDFAPGG--LNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV--GEGKALA  171 (221)
Q Consensus        96 gis~~~v~l~Pgg--~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~--g~~~a~~  171 (221)
                      ++-+....+....  ..++|||+. -|++||.+|+++ .+++....  .+.+++||++++|+|..|.+...  ++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~G~~~-~i~~~~~~--~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~   81 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYIND-YKMFWIDSGIAK-LIDKNCLV--SYEINSSSIILLKKNSIQRFSLTSLSDENINV   81 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEECSS-CEEEEESSSCEE-EEETTTTE--EEEECTTEEEEECTTCEEEEEEEECCSSCEEE
T ss_pred             hhhhhhhhhhcccchhccHhhhcc-eEEEEEecCceE-EECCccce--eEEEcCCCEEEEcCCCceeeccccCCCcceEE
Confidence            3445566666554  357899987 999999999999 77643111  68999999999999999998765  3444444


Q ss_pred             EEE
Q 027585          172 FTA  174 (221)
Q Consensus       172 l~~  174 (221)
                      +.+
T Consensus        82 ~~i   84 (276)
T 3gbg_A           82 SVI   84 (276)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.00043  Score=58.55  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      .++....+..||....+++ + .+|++|||+|++++...+  |+  ..++++||+++||+|..-.|.-.
T Consensus       166 ~~~~GiW~~tpG~~~~~~~-~-~~E~~~ILeG~v~lt~~~--G~--~~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          166 TLRIGVWDSTPYERISRPH-K-IHELMNLIEGRVVLSLEN--GS--SLTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             SCEEEEEEECCEEBCCEEC-S-SCEEEEEEECCEEEEETT--SC--EEEECTTCEEEECTTCEEEEEES
T ss_pred             CEEEeEEEeCCCEEECCcC-C-CCEEEEEEEeEEEEEeCC--CC--EEEECCCCEEEECCCCEEEEEEC
Confidence            3677888888988555432 3 489999999999998643  44  78999999999999999888765

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.20  E-value=0.00065  Score=56.77  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=52.7

Q ss_pred             EEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           98 SMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ....+.++||...++|.| +..|+ +||+|++.    ++     ...+.+|+.+..|.|..|.... |++.|.++.
T Consensus       147 ~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d~-----~~~~~~GsWlR~P~gs~h~~~a-g~~g~~i~~  210 (223)
T 3o14_A          147 TVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----VN-----DEVLGRNAWLRLPEGEALSATA-GARGAKIWM  210 (223)
T ss_dssp             EEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----ET-----TEEECTTEEEEECTTCCEEEEE-EEEEEEEEE
T ss_pred             EEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----EC-----CceECCCeEEEeCCCCccCcEE-CCCCeEEEE
Confidence            356678899999999999 66886 99999975    33     4689999999999999999887 667776554

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.17  E-value=0.0021  Score=54.76  Aligned_cols=73  Identities=18%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC--CCCeEEEEecCC-ccEEEEEEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP--RGLIHFQQNVGE-GKALAFTAF  175 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P--~g~~H~~~N~g~-~~a~~l~~~  175 (221)
                      +....+.||.-.++|-|.+-+.+.||++|+++-.  |..|.  ..++++||+-+..  +|+.|.-.|..+ ++++++-+.
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlW  141 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN--HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLW  141 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC--EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC--EEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEE
Confidence            4456788998899999998555789999998765  33344  7899999999994  567999999754 677777654

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=97.08  E-value=0.0021  Score=54.05  Aligned_cols=79  Identities=23%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeC---EEEEEEEecC-------------CeEE------EEEecCCcEEEEC
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKG---KLLVGFFTTN-------------NVFY------SKVLSAGEMFVIP  154 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G---~~~v~~~~~~-------------~~~~------~~~L~~GDv~~~P  154 (221)
                      ..--.+.+.||+..|.|.|+.-.|-+++--|   .+++...+++             |+..      ...|+||+.+-++
T Consensus       106 YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~  185 (246)
T 3kmh_A          106 YAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLP  185 (246)
T ss_dssp             EEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEEC
T ss_pred             ceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecC
Confidence            4556678899999999999998999999998   4455444432             2211      3589999999999


Q ss_pred             CCCeEEEEecCC-ccEEEEEEE
Q 027585          155 RGLIHFQQNVGE-GKALAFTAF  175 (221)
Q Consensus       155 ~g~~H~~~N~g~-~~a~~l~~~  175 (221)
                      +|+.|+++..+. +++.+-.+.
T Consensus       186 Pg~~H~F~ae~g~G~vligEVS  207 (246)
T 3kmh_A          186 PGLYHSFWAEAGFGDVLVGEVS  207 (246)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEE
T ss_pred             CCCEEEEEecCCCccEEEEEcc
Confidence            999999998765 345554443

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=96.97  E-value=0.0042  Score=47.46  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=55.3

Q ss_pred             cCCCcCCCC----CCCCCcEEEEEEeCEEEEEEEecCCe---EEEEEecCCcEEEECCCCeEEEEecCCccEEE-EEEEc
Q 027585          105 APGGLNPPH----SHPRASESGIVIKGKLLVGFFTTNNV---FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA-FTAFN  176 (221)
Q Consensus       105 ~Pgg~~~~H----~Hp~a~Ei~yVl~G~~~v~~~~~~~~---~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~-l~~~~  176 (221)
                      .|++..+.|    +|++..+.+.|++|++++..-+++|.   .......+|+..++|++..|+++...+ ++++ +.++.
T Consensus        22 lP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f~leFyc  100 (127)
T 3bb6_A           22 APAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYFNIDFFV  100 (127)
T ss_dssp             SCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEEEEEEEE
T ss_pred             ChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEEEEEEEe
Confidence            367778889    59999999999999999986544443   345678999999999999999998655 5555 44443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.97  E-value=0.0056  Score=54.09  Aligned_cols=73  Identities=26%  Similarity=0.187  Sum_probs=55.3

Q ss_pred             EEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEE-ecC---------------------------------CeEEEEEec
Q 027585          102 VDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFF-TTN---------------------------------NVFYSKVLS  146 (221)
Q Consensus       102 v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~-~~~---------------------------------~~~~~~~L~  146 (221)
                      +.+.| |+..++|+.+. .-++..++|+=++.+. .+.                                 -...+.+|+
T Consensus       145 ~~~gp~g~~~~~H~D~~-dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECCh-hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            55566 77889999765 7888889999888877 321                                 012578999


Q ss_pred             CCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          147 AGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       147 ~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +||++++|+|..|+.++.++++..-+++-
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            99999999999999999865555444443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.94  E-value=0.0062  Score=49.45  Aligned_cols=69  Identities=20%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             cCCCcCCCCCC--CCCcEEEEEEeCEE-EEEEEecC-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSH--PRASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~H--p~a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+|....+|+|  ..-.++++|++|++ .+-++...     |+.....|.+  +..++||+|..|.+.+.++. +.++..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            47888999999  66699999999997 45555443     5677888876  58999999999999999877 555544

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.91  E-value=0.0069  Score=49.14  Aligned_cols=70  Identities=21%  Similarity=0.104  Sum_probs=55.0

Q ss_pred             cCCCcCCCCCC--CCCcEEEEEEeCEE-EEEEEecC-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSH--PRASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~H--p~a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+|....+|+|  ..-.++++|++|++ .+-++...     |+.....|.+  +..++||+|..|.+.+.++. ++++..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            47888999999  55689999999997 55555443     5677788876  58999999999999999877 555544


Q ss_pred             E
Q 027585          175 F  175 (221)
Q Consensus       175 ~  175 (221)
                      .
T Consensus       136 ~  136 (184)
T 2ixk_A          136 T  136 (184)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.72  E-value=0.0079  Score=50.76  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=57.2

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEE--CCCCeEEEEecC-CccEEEEEEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVI--PRGLIHFQQNVG-EGKALAFTAF  175 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~--P~g~~H~~~N~g-~~~a~~l~~~  175 (221)
                      +....+.||.-.++|-|.+-+.+.||++|+++-.  |+.|.  ..++++||+-+.  -+|+.|.-.|.. +++++++-+.
T Consensus        43 ~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlW  118 (242)
T 1tq5_A           43 INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIW  118 (242)
T ss_dssp             EEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEE
T ss_pred             eccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCC--cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEE
Confidence            3456688988889999999666999999998765  33344  689999999999  566899999975 4677776654

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.69  E-value=0.0077  Score=49.39  Aligned_cols=69  Identities=19%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             cCCCcCCCCCCCCCcEEEEEEe-CEE-EEEEEecC----CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          105 APGGLNPPHSHPRASESGIVIK-GKL-LVGFFTTN----NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl~-G~~-~v~~~~~~----~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+|....+|.|+. .++++|++ |++ .+.++..+    |+.....|.++..++||+|..|.+.+.++. +.++...
T Consensus        68 ~~GvlRGlH~h~q-~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~  142 (197)
T 1nxm_A           68 RKNVLRGLHAEPW-DKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLV  142 (197)
T ss_dssp             ETTBEEEEEECSS-CEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             CCCCcceeeeccc-ceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEEC
Confidence            6788899999965 89999999 996 44444431    567789999999999999999999998766 5554443

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.64  E-value=0.015  Score=47.57  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             EcCCCcCCCCCCCC---CcEEEEEEeCEE-EEEEEecC-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEE
Q 027585          104 FAPGGLNPPHSHPR---ASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus       104 l~Pgg~~~~H~Hp~---a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      -.+|....+|+|..   -.++++|++|++ .+-++...     |+.....|.+  +..++||+|..|.+.+.++. +.++
T Consensus        72 s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~l  150 (196)
T 1wlt_A           72 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIY  150 (196)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEE
T ss_pred             CCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEE
Confidence            35787889999964   489999999999 55555443     4677888886  68999999999999999874 4443


Q ss_pred             E
Q 027585          173 T  173 (221)
Q Consensus       173 ~  173 (221)
                      .
T Consensus       151 y  151 (196)
T 1wlt_A          151 F  151 (196)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.56  E-value=0.0058  Score=49.72  Aligned_cols=66  Identities=24%  Similarity=0.507  Sum_probs=50.1

Q ss_pred             EEEEEcCCC-cCCCCCCCCCcEEEEEEeCEEEEEEEecCC----------------------------------eEEEEE
Q 027585          100 NRVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTNN----------------------------------VFYSKV  144 (221)
Q Consensus       100 ~~v~l~Pgg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------------------------~~~~~~  144 (221)
                      ..+-+.+++ ..++|+.+. .-+..+++|+=++.+..+..                                  +..+.+
T Consensus       126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  204 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI  204 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred             eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence            445566654 567787665 77889999999998864320                                  224679


Q ss_pred             ecCCcEEEECCCCeEEEEecCC
Q 027585          145 LSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       145 L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      |++||++++|+|..|..+|.+.
T Consensus       205 l~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          205 LSPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             ECTTCEEEECTTCEEEEEESSS
T ss_pred             ECCCCEEEeCCCCcEEEEECCC
Confidence            9999999999999999999864

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.40  E-value=0.015  Score=47.98  Aligned_cols=67  Identities=15%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             cCCCcCCCCCCC---CCcEEEEEEeCEEEEEEEe-cC-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEE
Q 027585          105 APGGLNPPHSHP---RASESGIVIKGKLLVGFFT-TN-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus       105 ~Pgg~~~~H~Hp---~a~Ei~yVl~G~~~v~~~~-~~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      .+|....+|+|.   .-.++++|++|++...+.| ..     |+.....|.+  +..++||+|..|.+.+.++. +.++
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~  155 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVM  155 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEE
Confidence            578889999995   3589999999996544443 22     5677888886  78999999999999999876 4444

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=96.39  E-value=0.027  Score=45.53  Aligned_cols=68  Identities=19%  Similarity=0.081  Sum_probs=53.2

Q ss_pred             cCCCcCCCCCCC---CCcEEEEEEeCEE-EEEEEecC-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHP---RASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp---~a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|.   .-.++++|++|++ .+-++...     |+.....|.+  +..++||+|..|.+.+.++. +.++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            478889999995   5589999999997 55555442     4677788876  48999999999999999877 44443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.23  E-value=0.029  Score=46.56  Aligned_cols=68  Identities=12%  Similarity=0.017  Sum_probs=52.9

Q ss_pred             cCCCcCCCCCCCC---CcEEEEEEeCEE-EEEEEecC-----CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHPR---ASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~---a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|..   -.++++|++|++ .+.++...     |+.....|.+.  ..++||+|..|.+.+.++. ++++.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            4788889999964   489999999997 45555432     46778888875  7999999999999999877 44443

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=96.22  E-value=0.053  Score=46.25  Aligned_cols=90  Identities=23%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP  154 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P  154 (221)
                      +...++.+..+.      ..-|-+-.++.++|+...|+-.|.--.| +||++|++.++         ...|.+|...++|
T Consensus        75 ~~~~gs~RlLs~------~d~GaSTl~V~fpp~~~~P~Gi~~ad~E-~fVL~G~i~~G---------~~~l~~h~Y~f~P  138 (303)
T 2qdr_A           75 NIAPGSRRLLTW------HDSGASTSRVVLPPKFEAPSGIFTADLE-IFVIKGAIQLG---------EWQLNKHSYSFIP  138 (303)
T ss_dssp             TSCCEEEEEEEE------CTTSCEEEEEEECTTCEECCBEESSCEE-EEEEESEEEET---------TEEECTTEEEEEC
T ss_pred             CcCccceeeccc------CCCCcceEEEEecCCCCCCCcccccceE-EEEEEeEEEeC---------CEEecCCceEEec
Confidence            334455555543      2335678899999999998877765578 99999999874         4789999999999


Q ss_pred             CCCeE-EEEecCCccEEEEEEEcCCCC
Q 027585          155 RGLIH-FQQNVGEGKALAFTAFNSHLP  180 (221)
Q Consensus       155 ~g~~H-~~~N~g~~~a~~l~~~~s~~p  180 (221)
                      +|+.- .+.-.|++++.++.+.+..-|
T Consensus       139 aGV~~~~~kv~~~~g~~iL~fe~g~~p  165 (303)
T 2qdr_A          139 AGVRIGSWKVLGGEEAEILWMENGSVP  165 (303)
T ss_dssp             TTCCBCCEEEETTSCEEEEEEECSSSC
T ss_pred             CCCccCceeecCCCCcEEEEEecCCcc
Confidence            99955 455568999999988555544

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=96.19  E-value=0.018  Score=50.83  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=55.3

Q ss_pred             EEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecC-----------------------------------CeEEEEEe
Q 027585          102 VDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTN-----------------------------------NVFYSKVL  145 (221)
Q Consensus       102 v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-----------------------------------~~~~~~~L  145 (221)
                      +.+.| |...++|+.+. .-+..+++|+=++.+..+.                                   -+..+.+|
T Consensus       187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  265 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  265 (349)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence            55654 45679998776 7889999999888875431                                   03468999


Q ss_pred             cCCcEEEECCCCeEEEEecCC-ccEEEEEEE
Q 027585          146 SAGEMFVIPRGLIHFQQNVGE-GKALAFTAF  175 (221)
Q Consensus       146 ~~GDv~~~P~g~~H~~~N~g~-~~a~~l~~~  175 (221)
                      ++||++++|+|..|...|.++ .....+...
T Consensus       266 ~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w  296 (349)
T 3d8c_A          266 GPGDVLYIPMYWWHHIESLLNGGITITVNFW  296 (349)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence            999999999999999999873 445555543

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.08  E-value=0.049  Score=44.80  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             cCCCcCCCCCCCC---CcEEEEEEeCEEE-EEEEecC-----CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHPR---ASESGIVIKGKLL-VGFFTTN-----NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~---a~Ei~yVl~G~~~-v~~~~~~-----~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|..   -.++++|++|++. +-++...     |+.....|.+.  ..++||+|..|.+.+.++. ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            5788889999953   4899999999974 4444432     46778888874  7999999999999999877 44444

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=95.99  E-value=0.02  Score=49.33  Aligned_cols=61  Identities=10%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             EcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          104 FAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       104 l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      +.+|... ..-.   .+-+++++||+..+.+++.     ++.|++||++.||++..|.+...  +.++++.+
T Consensus       214 ~G~Ges~~~~~~---~d~wiWqLEGss~Vt~~~q-----~~~L~~~DsLLIpa~~~y~~~r~--~gsv~L~I  275 (286)
T 2qnk_A          214 YGQGSSEGLRQN---VDVWLWQLEGSSVVTMGGR-----RLSLAPDDSLLVLAGTSYAWERT--QGSVALSV  275 (286)
T ss_dssp             ECSEEEEECCCS---SCEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEEEC--TTCEEEEE
T ss_pred             EcCCccccccCc---CcEEEEEEcCceEEEECCe-----EEeccCCCEEEecCCCeEEEEec--CCeEEEEE
Confidence            6666542 2222   2789999999999999887     99999999999999999999763  33444444

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=95.94  E-value=0.066  Score=44.68  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=52.5

Q ss_pred             cCCCcCCCCCCCC---CcEEEEEEeCEE-EEEEEecC-----CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHPR---ASESGIVIKGKL-LVGFFTTN-----NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~---a~Ei~yVl~G~~-~v~~~~~~-----~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|..   -.++++|++|++ .+-++...     |+.....|.+.  ..++||+|..|.+.+.++. ++++.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEE
Confidence            5788889999953   489999999997 45554432     46677888874  7999999999999999877 44443

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.93  E-value=0.046  Score=49.94  Aligned_cols=65  Identities=22%  Similarity=0.378  Sum_probs=49.4

Q ss_pred             EEEEEcCCC-cC-CCCCCCCCcEEEEEEeCEEEEEEEecCC----------------eEEEEEecCCcEEEECCCCeEEE
Q 027585          100 NRVDFAPGG-LN-PPHSHPRASESGIVIKGKLLVGFFTTNN----------------VFYSKVLSAGEMFVIPRGLIHFQ  161 (221)
Q Consensus       100 ~~v~l~Pgg-~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------~~~~~~L~~GDv~~~P~g~~H~~  161 (221)
                      ..+.+.|+| .. ++|+-.. +-+++.++|+=++.+..+..                .....+|++||++|+|+|..|+.
T Consensus       141 ~n~y~~~~g~~g~~~H~D~~-dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~  219 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYDDV-EVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA  219 (442)
T ss_dssp             EEEEEECTTCBCSCSEECSS-EEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEE
T ss_pred             cceEECCCCCCCccceECCc-ceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEE
Confidence            334555555 33 7999654 77888899998888765431                13478999999999999999999


Q ss_pred             EecC
Q 027585          162 QNVG  165 (221)
Q Consensus       162 ~N~g  165 (221)
                      ++.+
T Consensus       220 ~s~~  223 (442)
T 2xdv_A          220 DTPA  223 (442)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            9875

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.59  E-value=0.13  Score=47.67  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             EEEEEcCCCc--CCCCCCCCCcEEEEEEeCEEEEEEEecCC--------------------eEEEEEecCCcEEEECCCC
Q 027585          100 NRVDFAPGGL--NPPHSHPRASESGIVIKGKLLVGFFTTNN--------------------VFYSKVLSAGEMFVIPRGL  157 (221)
Q Consensus       100 ~~v~l~Pgg~--~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------------~~~~~~L~~GDv~~~P~g~  157 (221)
                      +.+.+.|++.  .++|+-+. +-++.=++|+=++.+..+..                    ...+.+|++||++++|+|.
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~~-DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~  244 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDDI-EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGF  244 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCSS-EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTC
T ss_pred             ceEEecCCCcccccCccCCc-ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCC
Confidence            3455666664  47998775 77888888988888865421                    1247899999999999999


Q ss_pred             eEEEEecCCccEEEEEEE
Q 027585          158 IHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       158 ~H~~~N~g~~~a~~l~~~  175 (221)
                      +|+..+.+++...=+.+-
T Consensus       245 ~H~~~s~~~~~SlhlTi~  262 (489)
T 4diq_A          245 IHQAECQDGVHSLHLTLS  262 (489)
T ss_dssp             EEEEEBCSSCCEEEEEEE
T ss_pred             ceEEEecCCCceEEEeec
Confidence            999999876554444433

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=95.54  E-value=0.069  Score=43.81  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=52.1

Q ss_pred             cCCCcCCCCCCC---CCcEEEEEEeCEEEEEEEec-C-----CeEEEEEecC--CcEEEECCCCeEEEEecCCccEE
Q 027585          105 APGGLNPPHSHP---RASESGIVIKGKLLVGFFTT-N-----NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKAL  170 (221)
Q Consensus       105 ~Pgg~~~~H~Hp---~a~Ei~yVl~G~~~v~~~~~-~-----~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~  170 (221)
                      .+|....+|.|.   .-..+++|++|++.--++|- .     |+.....|.+  +..++||+|..|.+.+.++....
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~  128 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATL  128 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEE
Confidence            578888999984   45899999999976665542 1     5677788876  67999999999999998776433

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=95.48  E-value=0.05  Score=49.87  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=45.5

Q ss_pred             CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          112 PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       112 ~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .-...+++|++++-+|++++.-.-.     ...+++||.++||+|+.+++.-.+  +++.+.+
T Consensus       172 ~f~NaDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRGi~frv~l~~--p~Rgyi~  227 (471)
T 1eyb_A          172 CFYNSDGDFLIVPQKGNLLIYTEFG-----KMLVQPNEICVIQRGMRFSIDVFE--ETRGYIL  227 (471)
T ss_dssp             EEEESSEEEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEECSS--SEEEEEE
T ss_pred             eeecCCCCEEEEEEeCCEEEEEecc-----cEEeccCCEEEECCccEEEEeeCC--CceEEEE
Confidence            3445667999999999999986654     788999999999999999997765  6665543

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.42  E-value=0.04  Score=48.35  Aligned_cols=71  Identities=20%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             EEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecC------------------------------CeEEEEEecCCc
Q 027585          101 RVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTN------------------------------NVFYSKVLSAGE  149 (221)
Q Consensus       101 ~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~------------------------------~~~~~~~L~~GD  149 (221)
                      .+.+.| |+..++|+.+. .-++..++|+=++.+..+.                              -+..+.+|++||
T Consensus       170 ~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD  248 (338)
T 3al5_A          170 VFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGD  248 (338)
T ss_dssp             EEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTC
T ss_pred             eeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCC
Confidence            344554 55678898775 6788889999888876431                              024688999999


Q ss_pred             EEEECCCCeEEEEecCCccEEEEEE
Q 027585          150 MFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       150 v~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++++|+|..|...|.+  ....+.+
T Consensus       249 ~LyiP~gWwH~v~~l~--~sisvn~  271 (338)
T 3al5_A          249 VLFIPALWFHNVISEE--FGVGVNI  271 (338)
T ss_dssp             EEEECTTCEEEEEESS--CEEEEEE
T ss_pred             EEEECCCCeEEEeeCC--CEEEEEE
Confidence            9999999999999985  4455554

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=95.31  E-value=0.13  Score=43.97  Aligned_cols=81  Identities=16%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             ceEEEEEEEcCCCc---CCCCCCCCC--c------EEEEE-Ee---CEEEEEEEecCC-eEEEEEecCCcEEEECCCCeE
Q 027585           96 GISMNRVDFAPGGL---NPPHSHPRA--S------ESGIV-IK---GKLLVGFFTTNN-VFYSKVLSAGEMFVIPRGLIH  159 (221)
Q Consensus        96 gis~~~v~l~Pgg~---~~~H~Hp~a--~------Ei~yV-l~---G~~~v~~~~~~~-~~~~~~L~~GDv~~~P~g~~H  159 (221)
                      .+-+..+ +.|||.   .|||.|++.  .      |+.|- +.   |-+.-.+-..++ --....++-||++.+|+|. |
T Consensus       152 ~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-H  229 (270)
T 2qjv_A          152 SLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-H  229 (270)
T ss_dssp             SCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-C
T ss_pred             eEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-C
Confidence            3566666 778874   599999874  3      88765 43   444444412122 1237999999999999999 9


Q ss_pred             EEEecCCccEEEEEEEcCC
Q 027585          160 FQQNVGEGKALAFTAFNSH  178 (221)
Q Consensus       160 ~~~N~g~~~a~~l~~~~s~  178 (221)
                      -.........-++.+...+
T Consensus       230 p~~a~pGy~~YylwvMaG~  248 (270)
T 2qjv_A          230 PVATIAGYDNYYLNVMAGP  248 (270)
T ss_dssp             CEEECTTCEEEEEEEEECS
T ss_pred             CCcCCCCcccEEEEEEECC
Confidence            8766545566688888764

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=95.19  E-value=0.043  Score=44.89  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             cccCCCcccce-EEEEEEEcCCCcCCCCCCCCCcEE----EEEEeC-EEEEEEEecCCeEEEEEecCCcEEEECCCCeEE
Q 027585           87 LAFPGVNTLGI-SMNRVDFAPGGLNPPHSHPRASES----GIVIKG-KLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHF  160 (221)
Q Consensus        87 ~~fP~l~~~gi-s~~~v~l~Pgg~~~~H~Hp~a~Ei----~yVl~G-~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~  160 (221)
                      .++|+....+. ++....+.||+.+++|..+....+    ..++-. ...+.++++     ++..++|++++|.-...|.
T Consensus        91 ~~ip~~~~~~~~~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V~~~-----~~~w~eGe~~~fDds~~He  165 (197)
T 3rcq_A           91 EKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANE-----TKTWEEGKVLIFDDSFEHE  165 (197)
T ss_dssp             TTCHHHHTCTTCEEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEETTE-----EECCCBTCEEEECTTSCEE
T ss_pred             HhCcccccCCcceEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEECCE-----EEEeeCCcEEEEcCCeEEE
Confidence            45665432111 456678999999999988753333    222222 455666655     8899999999999999999


Q ss_pred             EEecCCccEEEEEEEc
Q 027585          161 QQNVGEGKALAFTAFN  176 (221)
Q Consensus       161 ~~N~g~~~a~~l~~~~  176 (221)
                      ..|.++++-+ +.+++
T Consensus       166 v~N~~d~~Rv-vL~~D  180 (197)
T 3rcq_A          166 VWQDASSFRL-IFIVD  180 (197)
T ss_dssp             EEECSSSCEE-EEEEE
T ss_pred             EEECCCCCEE-EEEEe
Confidence            9999887543 33443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=94.87  E-value=0.019  Score=49.75  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC---------CeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---------NVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~---------~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      +.+.|+.+.||+.+.+|.=+  -|+....+|..++++.=..         |+  .+.+++|+++++....+|+..|.|++
T Consensus        91 l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~--~~~m~~GE~w~~d~~~~H~v~N~g~~  166 (290)
T 1e5r_A           91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDT--VIHMRPGEIWFLDAATVHSAVNFSEI  166 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTE--EECCCTTEEEECCTTSCEEEEESSSS
T ss_pred             hheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCCcEEEECCE--EEecCCCCEEEEcCCCeeEEEcCCCC
Confidence            46788899999999998543  2444445677666655322         22  78899999999999999999999876


Q ss_pred             c
Q 027585          168 K  168 (221)
Q Consensus       168 ~  168 (221)
                      +
T Consensus       167 ~  167 (290)
T 1e5r_A          167 S  167 (290)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=94.56  E-value=0.27  Score=42.05  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEecCCccEEEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ...|+.-.++|-|.+-+-+-||++|+++-.  |+.|.  ..++++||+=+.-+  |+.|.-.|..+++++.+-+.
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlW  115 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF--DSKAG--HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLW  115 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE--ETTTE--EEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eCCCC--ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEE
Confidence            667888899999998444889999998765  44454  68999999877776  56899999877788777654

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=93.88  E-value=0.21  Score=43.92  Aligned_cols=76  Identities=20%  Similarity=0.202  Sum_probs=51.9

Q ss_pred             EEEcC-CCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC---------------------------------------CeE
Q 027585          102 VDFAP-GGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN---------------------------------------NVF  140 (221)
Q Consensus       102 v~l~P-gg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~---------------------------------------~~~  140 (221)
                      +-+.+ |...++|+++.. .-+..++.|+=++.+..+.                                       .+.
T Consensus       176 ~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~  255 (336)
T 3k2o_A          176 FVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKP  255 (336)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCC
T ss_pred             EEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCce
Confidence            44555 445688888753 3588888998777665321                                       022


Q ss_pred             EEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcC
Q 027585          141 YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNS  177 (221)
Q Consensus       141 ~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s  177 (221)
                      .+.++++||++++|+|..|+..|.++.-++-....+.
T Consensus       256 ~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~  292 (336)
T 3k2o_A          256 LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASS  292 (336)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCT
T ss_pred             EEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCc
Confidence            4688999999999999999999987543333333333

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=93.71  E-value=0.33  Score=34.99  Aligned_cols=64  Identities=22%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+.||.   .+....+.|+.-|++|++++.+.+++   ...+.++||.+.+|++.--.++-.  ++...++.
T Consensus        29 Vm~pGe---ytF~T~~~E~M~vvsG~~~V~lpg~~---ew~~~~aGesF~Vpans~F~l~v~--~~~~YlC~   92 (94)
T 2oyz_A           29 VMLPGE---YTFGTQAPERMTVVKGALVVKRVGEA---DWTTYSSGESFDVEGNSSFELQVK--DATAYLCE   92 (94)
T ss_dssp             EECSEE---EEEEESSCEEEEEEESEEEEEETTCS---SCEEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             EEeceE---EEEcCCCeEEEEEEEeEEEEEcCCCC---cCEEECCCCEEEECCCCEEEEEEc--ccEeEEEE
Confidence            345554   22233468999999999999997642   278999999999999988777663  44555554

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=93.43  E-value=0.22  Score=45.56  Aligned_cols=75  Identities=19%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             cCCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      .+|...+.|..+.. .-+..+++|+=++.+..+.                         .+....++++||+++||.|..
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWw  283 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWI  283 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCE
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCce
Confidence            44556788998753 4577899999888876432                         124578999999999999999


Q ss_pred             EEEEecCCccEEEEEEEcCCC
Q 027585          159 HFQQNVGEGKALAFTAFNSHL  179 (221)
Q Consensus       159 H~~~N~g~~~a~~l~~~~s~~  179 (221)
                      |...|..+.-+.---..++.|
T Consensus       284 H~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          284 HAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             EEEECSSCEEEEEEEECCSSS
T ss_pred             EEEecCCCeEEEeeeeCCccc
Confidence            999998654443334455554

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=93.40  E-value=0.42  Score=41.10  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=55.8

Q ss_pred             ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEEe---CEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           96 GISMNRVDFAPGGL---NPPHSHPRASESGIVIK---GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg~---~~~H~Hp~a~Ei~yVl~---G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+-+..-.+.||+.   .|||.|++..|..|--+   ....+++.++.++.....++-||++++|...+|.  ..|.+.-
T Consensus       179 qllmg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gfv~q~~g~p~Etrhi~V~n~daVlvP~wh~h~--~~G~~~Y  256 (282)
T 1xru_A          179 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHS--GVGTKAY  256 (282)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEEEEEEETTEEEEEEECSSEEEEECTTCEEE--EEESSCC
T ss_pred             hEEEEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCEEEEEeCCCCCeeEEEEECCCEEEeCCCCCCC--CCCccce
Confidence            35566677888873   69999997777776654   1234444444444445678999999999656666  4466666


Q ss_pred             EEEEEEcCCC
Q 027585          170 LAFTAFNSHL  179 (221)
Q Consensus       170 ~~l~~~~s~~  179 (221)
                      .+|++...+|
T Consensus       257 ~ylwvMAG~n  266 (282)
T 1xru_A          257 TFIWGMVGEN  266 (282)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEcCC
Confidence            6787776654

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=92.99  E-value=0.23  Score=40.79  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             EEEEEEEcCCCcCCCCCCCCCcEE---EEEE----eCEEEEEEEecC------------------CeEEEEEecCCcEEE
Q 027585           98 SMNRVDFAPGGLNPPHSHPRASES---GIVI----KGKLLVGFFTTN------------------NVFYSKVLSAGEMFV  152 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a~Ei---~yVl----~G~~~v~~~~~~------------------~~~~~~~L~~GDv~~  152 (221)
                      .......++|+...+|.|++ .-+   +|+-    .|.+.+.  ++.                  .......-++|++++
T Consensus       104 ~~W~~~~~~G~~~~~H~H~~-~~lSgV~Yl~~p~~~G~L~f~--~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvl  180 (216)
T 2rg4_A          104 DIWINILPEGGVHGSHIHPH-SVISGTTYVAMPEGTSALKLE--DPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLL  180 (216)
T ss_dssp             EEEEEEECTTCCEEEECCTT-CSEEEEEEEECCSCSCCEEEE--CTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEE
T ss_pred             eEEEEEcCCCCcccCccCCC-CeEEEEEEEECCCCCccEEEe--CCccccccccCcccccCcccCCCeeEecCCCCeEEE
Confidence            35556778999999999986 332   2322    2344443  321                  111245679999999


Q ss_pred             ECCCCeEEEEecCCccEEEEEEE
Q 027585          153 IPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       153 ~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ||+...|.......+.-|+-..|
T Consensus       181 FpS~l~H~V~p~~~~~~RiSIsF  203 (216)
T 2rg4_A          181 WESWLRHEVPMNMAEEDRISVSF  203 (216)
T ss_dssp             EETTSCEEECCCCSSSCEEEEEE
T ss_pred             ECCCCEEeccCCCCCCCEEEEEE
Confidence            99999999965433333444344

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.92  E-value=0.2  Score=46.36  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=48.2

Q ss_pred             cCCCcCCCCCCCCCc-EEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRAS-ESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~-Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      ..|...+.|..+... -+..+++|+=++.+..+.                         .+.++.++++||++++|+|..
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWw  353 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  353 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCce
Confidence            445567899986533 467899999888887542                         134578999999999999999


Q ss_pred             EEEEecCC
Q 027585          159 HFQQNVGE  166 (221)
Q Consensus       159 H~~~N~g~  166 (221)
                      |+..|..+
T Consensus       354 H~V~nled  361 (488)
T 3kv5_D          354 HAVLTSQD  361 (488)
T ss_dssp             EEEEEEEE
T ss_pred             EEeeCCCC
Confidence            99999744

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=92.86  E-value=0.38  Score=43.84  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=48.8

Q ss_pred             ceEEEEEEEc--CCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEE-EEecCCcEEEECCCCeEEEEec---CCccE
Q 027585           96 GISMNRVDFA--PGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYS-KVLSAGEMFVIPRGLIHFQQNV---GEGKA  169 (221)
Q Consensus        96 gis~~~v~l~--Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~-~~L~~GDv~~~P~g~~H~~~N~---g~~~a  169 (221)
                      .+++.++++.  ++.....-.+. ...+++|++|++++...+  ++. . ..|++||++++|++..-.+.+.   +.+.+
T Consensus       356 eF~v~~~~~~~~~~~~~~~~~~~-~~~illv~~G~g~i~~~~--~~~-~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~  431 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIEGLN-GPSIVIATNGKGTIQITG--DDS-TKQKIDTGYVFFVAPGSSIELTADSANQDQDF  431 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCCS-SCEEEEEEESEEEEEETT--CGG-GCEEEETTCEEEECTTCCEEEEECSSCCSSCC
T ss_pred             eEEEEEEEecCCCCceeEEecCC-CcEEEEEEeCeEEEEeCC--ccc-ceEEeccCCEEEEeCCCcEEEEEecccCCCcE
Confidence            3678888887  34222111233 488999999999987632  100 2 6899999999999954445554   14455


Q ss_pred             EEEEEE
Q 027585          170 LAFTAF  175 (221)
Q Consensus       170 ~~l~~~  175 (221)
                      +++.++
T Consensus       432 ~~~~a~  437 (440)
T 1pmi_A          432 TTYRAF  437 (440)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555544

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=92.85  E-value=0.96  Score=38.94  Aligned_cols=82  Identities=20%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEEe---CEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           96 GISMNRVDFAPGGL---NPPHSHPRASESGIVIK---GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg~---~~~H~Hp~a~Ei~yVl~---G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+-+..-.+.||+.   .|||.|++..|..|--+   ....+++.++-++.....++-||++++|++-.|.  ..|...-
T Consensus       179 qllmg~evltpGg~WSSyPpHkHDrr~E~yyYF~l~p~~~v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp--~~Gt~~Y  256 (289)
T 1ywk_A          179 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHS--GVGTSNY  256 (289)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCC--EEESSCC
T ss_pred             eEEEEEEEEeCCCCcCCCCCccCCCCCeeEEEEEeCCCCeEEEECCCCCceEEEEEECCCEEEeCCCcccC--CCCCcCe
Confidence            35566677888873   59999997777776443   1123344443344445788999999999998886  2344454


Q ss_pred             EEEEEEcCCC
Q 027585          170 LAFTAFNSHL  179 (221)
Q Consensus       170 ~~l~~~~s~~  179 (221)
                      .+|++...+|
T Consensus       257 ~ylwvMAG~n  266 (289)
T 1ywk_A          257 SFIWAMCGEN  266 (289)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEEcCC
Confidence            5777776654

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=92.80  E-value=3  Score=33.16  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCCeEEEEEec----CCc---EEEECCCCeEEEEecCCcc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNNVFYSKVLS----AGE---MFVIPRGLIHFQQNVGEGK  168 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~L~----~GD---v~~~P~g~~H~~~N~g~~~  168 (221)
                      .+....-+.+|....||.- +++|+.+-..|. +++.+.+++|+..+.+|.    +|+   -+++|+|.....+. |  .
T Consensus        53 ~TaIYfLL~~~~~S~~HRv-~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~-~--~  128 (172)
T 3loi_A           53 LTMIYYLMQAGQPDPFHRV-KSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEV-D--G  128 (172)
T ss_dssp             CEEEEEEEETTCCEEEEEC-SSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTTSTTCBSEEEECTTCEEEEEE-S--S
T ss_pred             ceEEEEEEcCCCCccCEEe-cCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcccCCcceEEEECCCEEEEEEe-C--C
Confidence            3556667788875555544 469999999985 689999888877777664    577   78999999888877 3  2


Q ss_pred             EEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027585          169 ALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTI  215 (221)
Q Consensus       169 a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l  215 (221)
                      -.+++..-  .||+..-...+      .+.+-|.+.|.--++.|++|
T Consensus       129 ~~LVsctV--aPGF~f~dfel------~~~~~L~~~~P~~~~~I~~l  167 (172)
T 3loi_A          129 YCLASVLV--APGFDFKDFSL------GKREELIKEYPQHRDVIMRC  167 (172)
T ss_dssp             EEEEEEEE--ESCCCGGGCEE------CCHHHHHHHCGGGHHHHHHT
T ss_pred             cEEEEEEE--cCCccchhcEE------cCHHHHHHHCchHHHHHHHh
Confidence            33333221  35543332222      45566666676556666665

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=92.80  E-value=0.66  Score=39.91  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             EEEEEEEcCCCcCCCCCCCCCcEEEEEE-eCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEecCCccEEEEEE
Q 027585           98 SMNRVDFAPGGLNPPHSHPRASESGIVI-KGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        98 s~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl-~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g~~~a~~l~~  174 (221)
                      -+....+.|+.-.++|-|.+-+-+-||+ +|+++-.  |+.|.  ..++++||+-..-+  |+.|.-.|..+++++.+-+
T Consensus        41 ~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQl  116 (290)
T 1j1l_A           41 LFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DFCGH--TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQL  116 (290)
T ss_dssp             EEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ETTSC--EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEE
T ss_pred             EEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eCCCC--ceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEE
Confidence            3445567788778999999844478999 9998865  33344  68999999877765  5689999987778877766


Q ss_pred             E
Q 027585          175 F  175 (221)
Q Consensus       175 ~  175 (221)
                      .
T Consensus       117 W  117 (290)
T 1j1l_A          117 W  117 (290)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=92.67  E-value=0.36  Score=42.05  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=40.8

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHF  160 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~  160 (221)
                      +++.++++.++...   .......++.|++|++++...+.     ...|++||++++|++...+
T Consensus       251 F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~~~~-----~~~l~~G~~~~vpa~~~~~  306 (319)
T 1qwr_A          251 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKYEDK-----TCPLKKGDHFILPAQMPDF  306 (319)
T ss_dssp             CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCCE
T ss_pred             EEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEECCE-----EEEEcCCcEEEEeCCCceE
Confidence            56777777644322   22345899999999999976332     6799999999999987433

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=92.67  E-value=3.1  Score=34.47  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             ccCCeeEEEeeccccC-----CCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCC----------
Q 027585           75 TIFGSAVTPANVLAFP-----GVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNN----------  138 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP-----~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~----------  138 (221)
                      -+.||..+....+...     +-.....+....-+.+|....||. -+++|+.+.-.|. +++.+.+++|          
T Consensus        33 HPEGG~yrEt~Rs~~~v~~~~~~~R~~~TaIYfLL~~g~~S~~HR-v~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~  111 (225)
T 3m3i_A           33 HPEGGYYSEVVRSAHKVDNEEGNRRHAYTTIYFLCTPESPSHLHR-LCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQP  111 (225)
T ss_dssp             CTTSSEEEEEEECSSEEECTTSCEEESCEEEEEEECSSSCEEEEE-CSSEEEEEEEEESCEEEEEEESSSTTTTC-----
T ss_pred             CCCCceEEEEEECCCcccCCCCCCcccceeEEEEecCCCCcccEE-ecCCEEEEEECCCCEEEEEEcCCCcccccccccc
Confidence            4567777666543321     111112355556678887544444 3579999999987 6788877666          


Q ss_pred             ------------------eEEEEEec----CCc--EEEECCCCeEEEEecCCc-----cEEEEEEEcCCCCeeeeccchh
Q 027585          139 ------------------VFYSKVLS----AGE--MFVIPRGLIHFQQNVGEG-----KALAFTAFNSHLPGAVIVPTTL  189 (221)
Q Consensus       139 ------------------~~~~~~L~----~GD--v~~~P~g~~H~~~N~g~~-----~a~~l~~~~s~~pg~~~~~~~l  189 (221)
                                        +..+.+|.    +|+  -++||+|.....+..+++     .-.+++..-  .||+..-...+
T Consensus       112 ~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtV--aPGFdF~DFel  189 (225)
T 3m3i_A          112 PAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIV--SPGFDYRDFEI  189 (225)
T ss_dssp             -------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEE--ESCCCGGGCEE
T ss_pred             cccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEE--cCCccchhcEe
Confidence                              45566664    466  679999998888776543     333333322  25544333222


Q ss_pred             hcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027585          190 FASTPSVPNQVLTKTFQVDDDLISTI  215 (221)
Q Consensus       190 f~~~p~~~~~vla~~f~l~~~~v~~l  215 (221)
                            .+.+-|.+.|.--++.|++|
T Consensus       190 ------~~~~~L~~~~P~~~~~I~~l  209 (225)
T 3m3i_A          190 ------FTQAQLMELYPQHEAVIKQM  209 (225)
T ss_dssp             ------CBHHHHHHHCGGGHHHHHHH
T ss_pred             ------cCHHHHHHHCchHHHHHHHh
Confidence                  45556666665556666666

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=92.30  E-value=0.62  Score=34.50  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=49.9

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.||. .|.+....+.|+.-|++|++++.+.+++   ...+.++|+.|.+|++.--.++-  .++..++|.|
T Consensus        43 Vm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lpg~~---eW~~~~aGesF~VpanssF~lkv--~~~~~Y~C~y  109 (111)
T 3hqx_A           43 VILPTE-QPLTFETHVPERMEIISGECRVKIADST---ESELFRAGQSFYVPGNSLFKIET--DEVLDYVCHL  109 (111)
T ss_dssp             EECCCS-SCEEEECSSCEEEEEEESEEEEEETTCS---SCEEEETTCEEEECTTCEEEEEC--SSCEEEEEEE
T ss_pred             EEeccc-cceEEcCCCcEEEEEEEeEEEEEcCCcc---cCEEeCCCCEEEECCCCcEEEEE--CcceeEEEEc
Confidence            456663 1233344568999999999999998752   27899999999999999887775  3566666654

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=92.20  E-value=0.45  Score=43.50  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             cCCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      ..|+..+.|..+.. .-+..+++|+=++.+..+.                         .+.++.++++||++++|+|..
T Consensus       239 ~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWw  318 (447)
T 3kv4_A          239 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  318 (447)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCCe
Confidence            34556788887643 3467899999888876432                         133578999999999999999


Q ss_pred             EEEEecCCccEEEEEEEcCCC
Q 027585          159 HFQQNVGEGKALAFTAFNSHL  179 (221)
Q Consensus       159 H~~~N~g~~~a~~l~~~~s~~  179 (221)
                      |+..|..+.-+.---.+++.|
T Consensus       319 H~V~nledsIai~~NF~~~~n  339 (447)
T 3kv4_A          319 HAVLTPVDCLAFGGNFLHSLN  339 (447)
T ss_dssp             EEEEESSCEEEEEEEECCSTT
T ss_pred             EEEecCCCEEEEccccccccC
Confidence            999998554333333444443

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=91.93  E-value=0.21  Score=44.91  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=41.5

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIH  159 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H  159 (221)
                      .+++.++++.++..  ...+.+ ..++.|++|++++...++     +..|++||++++|++...
T Consensus       323 ~F~v~~~~l~~~~~--~~~~~~-~~il~v~~G~~~l~~~~~-----~~~l~~G~~~fvpa~~~~  378 (394)
T 2wfp_A          323 DFAFSLHDLALQET--SIGQHS-AAILFCVEGEAVLRKDEQ-----RLVLKPGESAFIGADESP  378 (394)
T ss_dssp             SCEEEEEECCSSCE--EECCSS-CEEEEEEEEEEEEEETTE-----EEEECTTCEEEECGGGCC
T ss_pred             EEEEEEEEEcCCeE--EecCCC-cEEEEEEeceEEEEECCe-----EEEEccCcEEEEeCCCce
Confidence            46788888875532  123444 799999999999876443     689999999999998533

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=91.88  E-value=1.1  Score=33.69  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=39.5

Q ss_pred             CCCcEEEEEEeCEEEEEEEecCCe---EEEEEecCCcEEEECCCCeEEEEecCC
Q 027585          116 PRASESGIVIKGKLLVGFFTTNNV---FYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       116 p~a~Ei~yVl~G~~~v~~~~~~~~---~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      .+...-+-|++|++++..-+++|.   .....+.+|+.-++|+...|++...++
T Consensus        36 ~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD   89 (119)
T 3dl3_A           36 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDD   89 (119)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTT
T ss_pred             CcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCC
Confidence            456677999999999996543332   246789999999999999999994333

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=91.69  E-value=0.32  Score=43.80  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             EEEcC-CCcCCCCCCCCCc-EEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEEC
Q 027585          102 VDFAP-GGLNPPHSHPRAS-ESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIP  154 (221)
Q Consensus       102 v~l~P-gg~~~~H~Hp~a~-Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P  154 (221)
                      +-+.| |...+.|+.+... -+..+++|+=++.+..++                         .+.++.++++||++++|
T Consensus       179 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIP  258 (397)
T 3kv9_A          179 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  258 (397)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeC
Confidence            34444 5567889987543 467899999888877542                         13457899999999999


Q ss_pred             CCCeEEEEecCC
Q 027585          155 RGLIHFQQNVGE  166 (221)
Q Consensus       155 ~g~~H~~~N~g~  166 (221)
                      +|..|+..|..+
T Consensus       259 sGW~H~V~nled  270 (397)
T 3kv9_A          259 TGWIHAVLTSQD  270 (397)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCeEEccCCcC
Confidence            999999999744

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=91.65  E-value=0.33  Score=43.31  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             cCCCcCCCCCCCCCc-EEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRAS-ESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~-Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      +.|+..+.|..+... -+..+++|+=++.+..+.                         .+.++.++++||++++|+|..
T Consensus       155 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGWw  234 (371)
T 3k3o_A          155 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  234 (371)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCCe
Confidence            345567889887644 366899999888876331                         134678999999999999999


Q ss_pred             EEEEecCCc
Q 027585          159 HFQQNVGEG  167 (221)
Q Consensus       159 H~~~N~g~~  167 (221)
                      |+..|..+.
T Consensus       235 H~V~nledS  243 (371)
T 3k3o_A          235 HAVLTPVDC  243 (371)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEecCCCe
Confidence            999997443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=91.24  E-value=1.1  Score=37.51  Aligned_cols=73  Identities=8%  Similarity=-0.042  Sum_probs=50.4

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ..+.+..+.++||+....-..++..-++||++|++++.     |    ..|++||.+++..+..-.+.+  .++++++.+
T Consensus       158 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~-----g----~~l~~gd~~~~~~~~~l~l~a--~~~a~~Ll~  226 (242)
T 1tq5_A          158 QDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTIN-----G----VKASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (242)
T ss_dssp             SSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEET-----T----EEEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             CCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEEC-----C----EEeCCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            35778889999998753333444467899999998872     2    369999999998766545555  355666655


Q ss_pred             EcCC
Q 027585          175 FNSH  178 (221)
Q Consensus       175 ~~s~  178 (221)
                      -...
T Consensus       227 ~~~~  230 (242)
T 1tq5_A          227 DLPP  230 (242)
T ss_dssp             EECC
T ss_pred             ECCc
Confidence            4433

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=90.65  E-value=0.9  Score=39.17  Aligned_cols=56  Identities=13%  Similarity=0.070  Sum_probs=40.3

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCc-EEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRAS-ESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~-Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      +++.++++.+....   .. ++. .++.|++| +++...+.     ...|++||++++|++...+..
T Consensus       230 F~v~~~~~~~~~~~---~~-~~~~~il~v~~G-~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i  286 (300)
T 1zx5_A          230 FGLEVVDVTGTAEI---KT-GGVMNILYAAEG-YFILRGKE-----TADLHRGYSCLVPASTDSFTV  286 (300)
T ss_dssp             EEEEEEEEEEEEEE---EC-CSBCEEEEEEES-CEEEESSS-----EEEECTTCEEEECTTCCEEEE
T ss_pred             EEEEEEEECCceEE---ec-CCceEEEEEccc-EEEEeCCe-----EEEEccceEEEEeCCCceEEE
Confidence            56777777642222   23 457 89999999 98876443     678999999999998854433

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=90.60  E-value=4.9  Score=31.35  Aligned_cols=90  Identities=13%  Similarity=0.019  Sum_probs=60.6

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCCeEEEEEec----CCc
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNNVFYSKVLS----AGE  149 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~L~----~GD  149 (221)
                      .|.||..+....+...+-. .-.+....-+.+|....+|.=.+++|+.+-..|. +++.+..++|+..+.+|.    +|+
T Consensus        19 HPEGG~yrEt~Rs~~~~~R-~~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~Ge   97 (154)
T 1znp_A           19 HPEGGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGE   97 (154)
T ss_dssp             CTTSSEEEEEEECSSSTTT-CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTE
T ss_pred             CCCCccEEEEEeCCCCCCC-cceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccCc
Confidence            4678888776654332211 1234555556777765555532579999999987 888888777766666664    566


Q ss_pred             --EEEECCCCeEEEEecC
Q 027585          150 --MFVIPRGLIHFQQNVG  165 (221)
Q Consensus       150 --v~~~P~g~~H~~~N~g  165 (221)
                        -++||+|.....+..|
T Consensus        98 ~pQ~vVP~G~WqaA~~~g  115 (154)
T 1znp_A           98 RPQVIVPANCWQSAESLG  115 (154)
T ss_dssp             ESEEEECTTCEEEEEESS
T ss_pred             ccEEEEcCCEEEEeeECC
Confidence              4899999999887664

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=89.89  E-value=0.69  Score=41.54  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=48.1

Q ss_pred             cCCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      +.|.....|..+.. .-+..+++|+=++.+..+.                         .+.++.++++||++++|+|..
T Consensus       182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWw  261 (392)
T 3pua_A          182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWI  261 (392)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCce
Confidence            44556788987653 4577899999888876432                         133578999999999999999


Q ss_pred             EEEEecCCc
Q 027585          159 HFQQNVGEG  167 (221)
Q Consensus       159 H~~~N~g~~  167 (221)
                      |+..|..+.
T Consensus       262 H~V~nledS  270 (392)
T 3pua_A          262 YATLTPVDC  270 (392)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEecCCCE
Confidence            999997443

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=89.67  E-value=0.43  Score=41.50  Aligned_cols=46  Identities=15%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             CCcEEEEEEeC----EEEEEEEecC----------C----eEEEEEecCCcEEEECCCCeEEEE
Q 027585          117 RASESGIVIKG----KLLVGFFTTN----------N----VFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus       117 ~a~Ei~yVl~G----~~~v~~~~~~----------~----~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      +-.|.+|+++.    ++.++..+.+          |    -+....|++||.+++|+|.+|.+.
T Consensus       116 gKpE~~y~L~~~~~~~~~~G~~~~~~e~l~~~i~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~  179 (319)
T 1qwr_A          116 GKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALC  179 (319)
T ss_dssp             CCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEEC
T ss_pred             CCCEEEEEccCCCchhheeCCCCCCHHHHHHHHHcCCHHHhceEEEcCCCCEEEcCCCCceEec
Confidence            35899999985    3444421110          1    024789999999999999999974

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=88.53  E-value=3.8  Score=34.85  Aligned_cols=84  Identities=8%  Similarity=-0.045  Sum_probs=55.5

Q ss_pred             EEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEe--cC--------CcE
Q 027585           81 VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVL--SA--------GEM  150 (221)
Q Consensus        81 v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L--~~--------GDv  150 (221)
                      +..++...- ++.  -+.+..++|++|.......-.+ +-.++.+.|++++.++++     ++.+  ..        .|+
T Consensus        16 ~~~itp~~a-~~~--y~~f~~~~L~~Ge~~~~~~~~~-E~~iv~l~G~~~V~~~g~-----~~~~~g~R~svF~~~~p~~   86 (270)
T 2qjv_A           16 IQHISPQNA-GWE--YVGFDVWQLXAGESITLPSDER-ERCLVLVAGLASVXAADS-----FFYRIGQRMSPFERIPAYS   86 (270)
T ss_dssp             EEEECHHHH-TSS--SCEEEEEEECTTCEEEECCSSE-EEEEEEEESCEEEEETTE-----EEEEECCCSSGGGCSCCCE
T ss_pred             EEEeCCCCC-CcE--EeEEEEEEecCCCEEEecCCCc-EEEEEEecceEEEEECCE-----EEeccccccccccCCCCcE
Confidence            555554332 222  1568888999999776665432 444566789999998776     5655  22        499


Q ss_pred             EEECCCCeEEEEecCCccEEEEEEE
Q 027585          151 FVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       151 ~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +++|+|.--.+...+  ++++....
T Consensus        87 lYvp~g~~v~i~a~~--~~~~~v~s  109 (270)
T 2qjv_A           87 VYLPHHTEAXVTAET--DLELAVCS  109 (270)
T ss_dssp             EEECSSCCEEEEESS--SEEEEEEE
T ss_pred             EEECCCCEEEEEecC--CceEEEEe
Confidence            999999966666654  46655544

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=88.06  E-value=1.4  Score=32.35  Aligned_cols=55  Identities=22%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      .+.||.   .+....+.|+.-|++|++++.+.+++   ...++++||.|.+|++.--.++-
T Consensus        42 Vm~PGe---Y~F~T~~~E~MevvsG~l~V~LpG~~---eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           42 LLHPGV---YTLSSEVAETIRVLSGMAYYHAEGAN---DVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             EECSEE---EEECCSSCEEEEEEEEEEEEECTTCS---SCEEEETTCEEEECSSSCEEEEE
T ss_pred             EEeeeE---EEecCCCcEEEEEEEeEEEEECCCCc---cCEEECCCCEEEECCCCcEEEEE
Confidence            345553   23344569999999999999987642   27899999999999998777664

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=87.69  E-value=3  Score=35.12  Aligned_cols=72  Identities=14%  Similarity=0.040  Sum_probs=48.3

Q ss_pred             cceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+..+.++||.....-...+. -++||++|++++.  +.++  ....|.+||.+++..+..-.+.+  .++++++.
T Consensus       180 ~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~--g~~~--~~~~l~~gd~~~l~~~~~l~l~a--~~~a~~LL  251 (256)
T 2vec_A          180 QQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHAL--THHE--EKAALTCGDGAFIRDEANITLVA--DSPLRALL  251 (256)
T ss_dssp             SSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEE--ETTE--EEEEECTTCEEEEESCSEEEEEE--SSSEEEEE
T ss_pred             CCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEEC--Cccc--cceEECCCCEEEECCCCeEEEEe--CCCCEEEE
Confidence            356788889999987644443443 7899999998874  3111  14679999999997665444444  24555554

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=87.48  E-value=0.53  Score=42.18  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=31.7

Q ss_pred             EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC
Q 027585          140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL  179 (221)
Q Consensus       140 ~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~  179 (221)
                      .++..-++||.++||+|.+|..+|..+.--+..-.++.++
T Consensus       292 ~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~  331 (392)
T 2ypd_A          292 TCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEH  331 (392)
T ss_dssp             CEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGG
T ss_pred             eEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhh
Confidence            4578889999999999999999999865555555555544

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=87.47  E-value=2.3  Score=36.44  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ...+.+..+.+++|........++..-++||++|++++.  +.+.   ...+.++.++++..|..-.+.+.+.++++++.
T Consensus       166 ~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~--g~~~---~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LL  240 (290)
T 1j1l_A          166 RTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG--PDDA---QQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  240 (290)
T ss_dssp             SSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES--CTTS---CEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             cCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC--Cccc---ceeccCceEEEecCCCEEEEEEcCCCCcEEEE
Confidence            346788889999999763333333367899999999873  2100   14566777777776766556654566777776


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      +-..
T Consensus       241 l~G~  244 (290)
T 1j1l_A          241 IAGE  244 (290)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            5543

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=86.39  E-value=2.3  Score=36.17  Aligned_cols=74  Identities=11%  Similarity=-0.007  Sum_probs=49.8

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC-C----CeEEEEecCCcc
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR-G----LIHFQQNVGEGK  168 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~-g----~~H~~~N~g~~~  168 (221)
                      ...+.+..+.++||........++..-++||++|++++  ++.     ...|.+||.+++.. +    ..-.+.+.  ++
T Consensus       164 ~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v--~g~-----~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~  234 (277)
T 2p17_A          164 IVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVF--GAD-----NIEGKAGQALFFSRHNRGEETELNVTAR--EK  234 (277)
T ss_dssp             SSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEE--TTT-----TEEEETTEEEEECCCCTTCEEEEEEEES--SS
T ss_pred             CCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEE--CCC-----ceEeCCCcEEEEcCCCCCccceEEEEeC--CC
Confidence            34678899999999976433333336789999999876  231     24799999999986 5    33344553  35


Q ss_pred             EEEEEEEc
Q 027585          169 ALAFTAFN  176 (221)
Q Consensus       169 a~~l~~~~  176 (221)
                      ++++.+-.
T Consensus       235 a~~Ll~~G  242 (277)
T 2p17_A          235 LRLLLYAG  242 (277)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEec
Confidence            66665443

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=85.58  E-value=1.7  Score=40.51  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             cCCCcCCCCCCCCC-cEEEEEEeCEEEEEEEecC-------------------------CeEEEEEecCCcEEEECCCCe
Q 027585          105 APGGLNPPHSHPRA-SESGIVIKGKLLVGFFTTN-------------------------NVFYSKVLSAGEMFVIPRGLI  158 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a-~Ei~yVl~G~~~v~~~~~~-------------------------~~~~~~~L~~GDv~~~P~g~~  158 (221)
                      +.|....+|.-+.. .-+..|++|+=++.+..+.                         +.....++++||.+++|+|..
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            34445677876543 3677888888887776542                         123468999999999999999


Q ss_pred             EEEEecCC
Q 027585          159 HFQQNVGE  166 (221)
Q Consensus       159 H~~~N~g~  166 (221)
                      |+..|..+
T Consensus       384 HaV~tleD  391 (528)
T 3pur_A          384 HAVLTPVD  391 (528)
T ss_dssp             EEEEEEEE
T ss_pred             EEEecCCC
Confidence            99999744

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=85.13  E-value=12  Score=33.13  Aligned_cols=49  Identities=18%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             cEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEE
Q 027585          119 SESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL  170 (221)
Q Consensus       119 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~  170 (221)
                      .--..|++|++++....++|. ....|+++|..++-+-++|.|.  |.....
T Consensus       355 e~hY~v~~G~lTL~W~~~dGt-~~a~L~PDgSAwv~PFV~H~w~--G~GtVl  403 (443)
T 3g7d_A          355 ENHYVVTEGRLTLEWDGPDGP-ASVELEPDGSAWTGPFVRHRWH--GTGTVL  403 (443)
T ss_dssp             EEEEEEEESCEEEEEEETTEE-EEEEECTTCEEEECTTCCEEEE--SSEEEE
T ss_pred             cceEEEecCceEEEecCCCCc-cceEECCCCceeeccccccccc--CCceEE
Confidence            334558899999999988776 7899999999999999999998  454433

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=82.50  E-value=2.3  Score=30.54  Aligned_cols=52  Identities=12%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EE---EEEecCCcEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FY---SKVLSAGEMF  151 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~---~~~L~~GDv~  151 (221)
                      +....+++|...-.- ......+.+|++|.+++...+.+|+ ..   ...+.+||.+
T Consensus        29 ~~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A           29 SEEKSFPTGSVIFKE-NSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             EEEEEECTTCEEECT-TSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             hcEEecCCCCEEEeC-CCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            455667777754222 2234889999999999987766663 33   5678999976

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=81.89  E-value=3.2  Score=29.91  Aligned_cols=51  Identities=16%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             EEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE
Q 027585          100 NRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF  151 (221)
Q Consensus       100 ~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~  151 (221)
                      ....+++|...-..-. ....+.+|++|.+.+...+.+|+ .....+.+||.+
T Consensus        29 ~~~~~~~g~~i~~~g~-~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~   80 (149)
T 2pqq_A           29 SEVTLARGDTLFHEGD-PGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELI   80 (149)
T ss_dssp             EEEEECTTCEEECTTS-EECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEE
T ss_pred             eEEEeCCCCEEECCCC-CCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEe
Confidence            4566777776433222 24779999999999998876664 346789999976

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=81.85  E-value=5.9  Score=34.01  Aligned_cols=69  Identities=10%  Similarity=0.116  Sum_probs=44.1

Q ss_pred             EEEcCCCcCCCCCCCCCcEEEEE-EeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe-cC-CccEEEEEEE
Q 027585          102 VDFAPGGLNPPHSHPRASESGIV-IKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN-VG-EGKALAFTAF  175 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~Ei~yV-l~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N-~g-~~~a~~l~~~  175 (221)
                      +.|+.|......+--+..|+.+| +.|.+++.++++     ++.|..-|++++|+|..-.... .+ ..++++....
T Consensus        62 l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~vdg~-----~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~s  133 (289)
T 1ywk_A           62 LEIILDKELGVDYFLERRELGVINIGGPGFIEIDGA-----KETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISC  133 (289)
T ss_dssp             EECCCSGGGTSSSTTTTEEEEEEECSSCEEEEETTE-----EEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEE
T ss_pred             EEcCCCceecccccCCCcEEEEEEccCeEEEEECCE-----EEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEc
Confidence            44555544333332233676554 589999999876     7899999999999997644433 22 3455555433

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=81.24  E-value=1.1  Score=38.51  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=34.6

Q ss_pred             CcEEEEEEe-CEEEEEEEecC-----------Ce------EEEEEecCCcEEEECCCCeEEEE
Q 027585          118 ASESGIVIK-GKLLVGFFTTN-----------NV------FYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus       118 a~Ei~yVl~-G~~~v~~~~~~-----------~~------~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      -.|.+|+++ .++..++....           ++      +....|++||.+++|+|.+|.+-
T Consensus       117 KpE~~y~L~~~~~~~Gf~~~~~~~~~~~~l~~~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~  179 (300)
T 1zx5_A          117 VESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGE  179 (300)
T ss_dssp             CCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEEEE
T ss_pred             CcEEEEEcccHHHhhCCCCCCCHHHHHHHHHhCchhHHHHhceeECCCCCEEEcCCCCceEcC
Confidence            479999998 56666654321           33      45788999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	3e-71
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-36
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	2e-34
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	5e-34
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	1e-21
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	6e-30
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	2e-29
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	1e-25
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	4e-19
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	9e-18
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	3e-17
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-13
d1lr5a_	160	b.82.1.2 (A:) Auxin binding protein {Maize (Zea ma	6e-08
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-07
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	2e-07
d1o4ta_	115	b.82.1.9 (A:) Hypothetical protein TM1287 {Thermot	2e-07
d1v70a_	105	b.82.1.9 (A:) Hypothetical protein TTHA0104 {Therm	2e-07
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	4e-07
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	2e-06
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	7e-06
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	8e-06
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	1e-05
d2f4pa1	134	b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Th	3e-05
d1yhfa1	112	b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {S	5e-05
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	6e-05
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	7e-05
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	2e-04
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	0.002

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  214 bits (545), Expect = 3e-71
 Identities = 111/197 (56%), Positives = 134/197 (68%), Gaps = 5/197 (2%)

Query: 29  DPDPLQDFCVADLKASA-SLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPANV 86
           DPDPLQDFCVADL   A S+NG  CK  +E      F   L+K GNT T  GSAVT  +V
Sbjct: 2   DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61

Query: 87  LAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSK 143
             +PG NTLG+SMNRVDFAPGG NPPH HPRA+E G+V+KG+LLVG   +    N  YS+
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121

Query: 144 VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTK 203
           V+ AGE FVIPRGL+HFQ NVG+ +A    +FNS  PG V VP TLF S P +P  VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181

Query: 204 TFQVDDDLISTIKSKFG 220
             +V+  ++  +KSKF 
Sbjct: 182 ALRVEAGVVELLKSKFA 198

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  123 bits (311), Expect = 2e-36
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN 137
             +VT A  L FP ++ L +S          +  PH +  A+     + G+ L+     N
Sbjct: 23  AGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCN 82

Query: 138 -NVFYSKVLSAGEMFVIPRGLIHFQQNVGEG-KALAFTAFNSHLPGAVIVPTTLFASTPS 195
               +   L  G + ++P+  +   ++  +  + ++F   ++ + G +    +L  + P 
Sbjct: 83  GERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPE 142

Query: 196 VPNQVLTKTFQVDDDLISTIKSK 218
              +V+  TF +       IK+ 
Sbjct: 143 ---EVIQHTFNLKSQQARQIKNN 162

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  118 bits (298), Expect = 2e-34
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN 137
              ++  N L  P +   G+S   V     G+  PH +  A+    V +GK  V      
Sbjct: 28  AGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQ 87

Query: 138 -NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSV 196
            N  +   L  G++ V+P+  +  +Q   +G  L +  F +H          +F + PS 
Sbjct: 88  GNAVFDGELRRGQLLVVPQNFVVAEQGGEQG--LEYVVFKTHHNAVSSYIKDVFRAIPS- 144

Query: 197 PNQVLTKTFQVDDDLISTIKSK 218
             +VL+ ++ +    +  +K +
Sbjct: 145 --EVLSNSYNLGQSQVRQLKYQ 164

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  122 bits (308), Expect = 5e-34
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 7/157 (4%)

Query: 63  FFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESG 122
           F +  L +E   +  G  V  A+   F    T  I+   V   PG +   H HP   E  
Sbjct: 219 FTYRLLEQEPIESEGGK-VYIADSTNFKVSKT--IASALVTVEPGAMRELHWHPNTHEWQ 275

Query: 123 IVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA 182
             I GK  +  F ++    +    AG++  +P  + H+ +N+G+   +    F       
Sbjct: 276 YYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYAD 335

Query: 183 VIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
           V +   L      +P   +     +  D    +  + 
Sbjct: 336 VSLNQWLAM----LPETFVQAHLDLGKDFTDVLSKEK 368

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 32/152 (21%), Positives = 48/152 (31%), Gaps = 5/152 (3%)

Query: 68  LSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKG 127
            S   N    G       V   P      ++   +   PG +   H H  A E   +I G
Sbjct: 45  FSDTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYG 101

Query: 128 KLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPT 187
              V         +   +  G+++  P GL H  Q + EG A     F+           
Sbjct: 102 SARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEG-AEFLLVFDDGSFSENST-F 159

Query: 188 TLFASTPSVPNQVLTKTFQVDDDLISTIKSKF 219
            L       P +V+   F V  + IS +  K 
Sbjct: 160 QLTDWLAHTPKEVIAANFGVTKEEISNLPGKE 191

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  106 bits (265), Expect = 2e-29
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 58  VTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPR 117
           ++S D  F+  S++   +     +        P +  L + ++ VD   G L  PH + +
Sbjct: 3   ISSEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSK 62

Query: 118 ASESGIVIKGKLLVGFFTTNNVF--------------YSKVLSAGEMFVIPRGLIHFQQN 163
           A    ++ +G+  +                       Y   LS  ++FVIP G       
Sbjct: 63  AIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNA 122

Query: 164 VGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
             +    AF   N+       +  +       +P+QV    F      I  +   
Sbjct: 123 TSDLNFFAF-GINAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKS 176

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 95.4 bits (237), Expect = 1e-25
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF-------TTNNVFYSKVL 145
           N+L + ++ ++   G L  PH + +A    +V +G+  V          T     Y   L
Sbjct: 16  NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 75

Query: 146 SAGEMFVIPRGLIHFQQNVGEGKALAFT-----AFNSHLPGAV-IVPTTLFASTPSVPNQ 199
           S  ++FVIP       +         F         + L G    V +++          
Sbjct: 76  SKDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIG--RALDGKD 133

Query: 200 VLTKTFQVDDDLISTIKSK 218
           VL  TF    D +  + +K
Sbjct: 134 VLGLTFSGSGDEVMKLINK 152

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 69  SKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           ++ G   +               +      + +    P  +  PH H  A     V+ G+
Sbjct: 20  NQNGRIRLLQR--FNKRSPQLENLRD--YRIVQFQSKPNTILLPH-HADADFLLFVLSGR 74

Query: 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL--AFTAFNSHLPGAVIVP 186
            ++     ++   S  L  G+   IP G  ++  N  + + L   + A   + PG     
Sbjct: 75  AILTLVNNDDR-DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDF 133

Query: 187 TTLFASTPS-----VPNQVLTKTFQVDDDLISTIK 216
                           + +L  +F  + + I+ + 
Sbjct: 134 FLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVL 168

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 75.4 bits (185), Expect = 9e-18
 Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 13/157 (8%)

Query: 69  SKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           ++ G+  +        +      +    +        P  L  PH H  +    +V++G+
Sbjct: 17  NQHGSLRLLQR--FNEDTEKLENLRDYRVL--EYCSKPNTLLLPH-HSDSDLLVLVLEGQ 71

Query: 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF--NSHLPGAVIVP 186
            ++     +    +  L  G+   I  G   +  N    + L    F      PG V   
Sbjct: 72  AILVLVNPDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDF 130

Query: 187 TTLFASTP-----SVPNQVLTKTFQVDDDLISTIKSK 218
                        +     L  ++    D I     +
Sbjct: 131 FLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 167

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 19/160 (11%)

Query: 69  SKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           ++ G+  +               +      +   +  P  L  PH H  A    +++ G 
Sbjct: 16  NQYGHVRVLQRF--NKRSQQLQNLR--DYRILEFNSKPNTLLLPH-HADADYLIVILNGT 70

Query: 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF----------NSH 178
            ++     ++   S  L +G+   +P G  ++  N    + L                S 
Sbjct: 71  AILTLVNNDD-RDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESF 129

Query: 179 LPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK 218
              +     +           +L  ++    + I+ +   
Sbjct: 130 FLSSTQAQQSYLQGFSK---NILEASYDTKFEEINKVLFG 166

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 12/137 (8%)

Query: 93  NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN-----NVFYSKVLSA 147
           N     +      P  L  P     A    +V  G  ++     +         S     
Sbjct: 38  NLEDYRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIF 96

Query: 148 GEMFVIPRGLIHFQQNVGEGKALAFTAF--NSHLPGAVIVPTTLFASTPSV----PNQVL 201
            +   IP G I +  N    + L         + P       +   +  S        +L
Sbjct: 97  SDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHIL 156

Query: 202 TKTFQVDDDLISTIKSK 218
             +F    + I+ +  +
Sbjct: 157 EASFNSKFEEINRVLFE 173

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 8/124 (6%)

Query: 78  GSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN 137
           G +          G+  + + +     +PG   P H      E   V+KGK  +   +++
Sbjct: 24  GLSHITVAGALNHGMKEVEVWLQT--ISPGQRTPIH-RHSCEEVFTVLKGKGTLLMGSSS 80

Query: 138 NVFYSK----VLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFA-S 192
             +  +           F IP    H   N  E + L      S  P  + +        
Sbjct: 81  LKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPH 140

Query: 193 TPSV 196
           T +V
Sbjct: 141 TAAV 144

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG 156
             +   +   G     H H   +E+   ++G+       T+       L+ G+   +P  
Sbjct: 214 FIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQ---MTMWTDG--QEIQLNPGDFLHVPAN 268

Query: 157 LIHFQQNVGEG 167
            +H  +     
Sbjct: 269 TVHSYRLDSHY 279

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 69  SKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK 128
           S EG   +FG  V  A V+A          +  +    G   P H H    E  +V+ GK
Sbjct: 16  SGEGERYLFGRQV--ATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGK 73

Query: 129 LLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKAL 170
           L +   T +   Y  +L +G+   IP G  H  +       L
Sbjct: 74  LEL---TLDGERY--LLISGDYANIPAGTPHSYRMQSHRTRL 110

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
           ++       R+   PG     H H    E   ++ G+ +      +    +      ++ 
Sbjct: 34  MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAG-----DVC 88

Query: 152 VIPRGLIHFQQNVGE 166
               G  H  +N G 
Sbjct: 89  FTDSGESHSIENTGN 103

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Length = 105

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 83  PANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYS 142
           P  +   P   +  +  +     PG     H H  + +    ++G+++V       +   
Sbjct: 14  PEKMAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAP 73

Query: 143 KVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF 175
                      P G  H  +N     AL     
Sbjct: 74  G-----MAAFAPAGAPHGVRNESASPALLLVVT 101

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 97  ISMNRVDFAPGGLN--PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154
            ++   +          PH H +  E+    KG   +   + N    ++VLS+G+   +P
Sbjct: 46  FTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVP 105

Query: 155 RGLIHFQQNVGEG 167
           R + H  Q     
Sbjct: 106 RNVTHTFQIQDPD 118

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 97  ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRG 156
           +S   +   P  +  P      + +  V +G+++V             L +G++  IP G
Sbjct: 249 LSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAAT----ELGSGDVAFIPGG 304

Query: 157 LIHFQQNVGEGKALAFTAFNSHLPG 181
           +     +  E         +S   G
Sbjct: 305 VEFKYYS--EAYFSKVLFVSSGSDG 327

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 81  VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF 140
             PA         TL   +  +   PG + P H H   S    +++GK            
Sbjct: 40  ENPALRGQSSITATLYAGLQLI--MPGEVAPSHRHN-QSALRFIVEGKGAFTAVDGERT- 95

Query: 141 YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL 179
               ++ G+  + P+   H   N G+   +     +  L
Sbjct: 96  ---PMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPL 131

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 89  FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAG 148
            P      ++M+ + F PG  +             +I G+   G +  +N +Y   +  G
Sbjct: 160 LPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQ---GMYNLDNEWY--PVEKG 214

Query: 149 EMFVIPRGLIHFQQNVGEGKALAF 172
           +   +   +      VG  + L +
Sbjct: 215 DYIFMSAYVPQAAYAVGREEPLMY 238

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 96  GISMNRVDFAPGGLNP-PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP 154
             S   V+ AP G +  P   P A     V++G+L +   T     +   +  G    IP
Sbjct: 65  TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSL---TLQGQVH--AMQPGGYAFIP 119

Query: 155 RGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFAS 192
            G  +  +N              +     +     F +
Sbjct: 120 PGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVT 157

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 85  NVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKV 144
            +L           +  V F PG     HSHP   +  IV +G    GF+       +++
Sbjct: 23  KMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGG-QILIVTRG---KGFYQERGK-PARI 77

Query: 145 LSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAV 183
           L  G++  IP  ++H+     + + L     ++ +    
Sbjct: 78  LKKGDVVEIPPNVVHWHGAAPD-EELVHIGISTQVHLGP 115

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Length = 112

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 92  VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF 151
           V    + +       G     HS P       ++ G   +          +  ++ G+  
Sbjct: 32  VQRQDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITIDQE-----TYRVAEGQTI 85

Query: 152 VIPRGLIHFQQNVGEGKAL 170
           V+P G+ H    V   + L
Sbjct: 86  VMPAGIPHALYAVEAFQML 104

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 96  GISMNRVDFAPGGLNPP--------HSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSA 147
            ++       PG +           H+    +E  + +KGK  +   T         +  
Sbjct: 66  DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEP 125

Query: 148 GEMFVIPRGLIHFQQNVGEGKALAFTAFNSH 178
           G +  +P    H   N+G+   +    + + 
Sbjct: 126 GTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (89), Expect = 7e-05
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 96  GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR 155
              M      PGGL   HSHP       V+KGKL V           + +  G    +  
Sbjct: 35  NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLKE-----QGEETVEEGFYIFVEP 88

Query: 156 GLIHFQQNVGEGKA 169
             IH  +N  + + 
Sbjct: 89  NEIHGFRNDTDSEV 102

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 89  FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAG 148
            P      ++M+ + FAPG  +             ++ G+   G +  +N +    +  G
Sbjct: 163 LPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQ---GVYNLDNNWI--PVKKG 217

Query: 149 EMFVIPRGLIHFQQNVGEGKALAF 172
           +   +    +     VG G+A ++
Sbjct: 218 DYIFMGAYSLQAGYGVGRGEAFSY 241

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 26/107 (24%)

Query: 95  LGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF------TTNNVF-------- 140
            G+++++      GL+ P  +    +  IV++GK  +GF       T             
Sbjct: 37  AGVTVSKRTLNRNGLHLPS-YSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS 95

Query: 141 -----------YSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN 176
                        +  + G++ VIP G+ ++  N G+   +A +  +
Sbjct: 96  RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLD 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	99.97
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.97
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	99.95
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.95
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.95
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.9
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.88
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.88
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.87
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.84
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.81
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.75
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.73
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.66
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.64
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.62
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.62
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.6
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.58
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.49
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.4
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.38
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.34
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.32
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.31
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.31
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.28
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.27
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.26
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.25
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.24
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.23
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.2
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.18
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.14
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.1
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.01
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.0
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.96
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.81
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.74
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.71
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.68
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.66
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.25
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.17
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	98.12
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	97.77
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.64
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.62
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.59
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.56
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	97.09
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.69
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	96.53
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.47
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	96.29
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	96.28
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.2
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	96.18
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.74
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.55
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.49
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	95.01
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	94.74
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	94.7
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	94.37
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	94.22
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	93.65
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.52
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	92.75
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	92.62
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	92.56
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	91.71
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	91.62
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	90.37
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	90.26
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	89.84
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	88.87
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	88.67
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	88.01
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	87.76
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	86.64
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	85.51
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	83.74
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	82.25
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	81.54
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	80.3

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=2.2e-58  Score=383.43  Aligned_cols=193  Identities=57%  Similarity=0.950  Sum_probs=186.4

Q ss_pred             cCCCCCcceeeccCCC-CcccCCcccCCCcccccCCeEEecccCCCCc-ccCCeeEEEeeccccCCCcccceEEEEEEEc
Q 027585           28 ADPDPLQDFCVADLKA-SASLNGFPCKLAAEVTSGDFFFDGLSKEGNT-TIFGSAVTPANVLAFPGVNTLGISMNRVDFA  105 (221)
Q Consensus        28 ~d~~~~~dfcva~~~~-~~~~~g~~ck~p~~~~~~df~~~~l~~~~~~-~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~  105 (221)
                      +||||||||||||+.+ .+++||||||+++.++.+||+|++|..++++ ++.|++++.+++.+||+|+++|++++|++++
T Consensus         1 sdp~~lqdfcvad~~~~~~~~~g~~ck~~~~~~~~~f~~~~l~~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~   80 (201)
T d2et1a1           1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA   80 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBCCGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEEC
T ss_pred             CCCcccceeEeecCCCCccccCCcccCChhhccccceeecccccCCCccCCCCcEEEEeehhcCccccccceeEEEEEEC
Confidence            6999999999999976 4899999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCcEEEEEEeCEEEEEEEec---CCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCee
Q 027585          106 PGGLNPPHSHPRASESGIVIKGKLLVGFFTT---NNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA  182 (221)
Q Consensus       106 Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~---~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~  182 (221)
                      ||++.+||||++++|++||++|++++++.++   ++++++++|++||+++||+|.+|+++|.|+++++++++|++++||.
T Consensus        81 pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~  160 (201)
T d2et1a1          81 PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI  160 (201)
T ss_dssp             TTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCC
T ss_pred             CCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcc
Confidence            9999999999999999999999999999764   5789999999999999999999999999999999999999999999


Q ss_pred             eeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhhC
Q 027585          183 VIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSKFG  220 (221)
Q Consensus       183 ~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~~~  220 (221)
                      +.++.++|++.|.||+|||+++|++|+++++|||++|+
T Consensus       161 ~~~~~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f~  198 (201)
T d2et1a1         161 VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA  198 (201)
T ss_dssp             EEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTTT
T ss_pred             eehhhhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhcc
Confidence            99999999998889999999999999999999999997

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.97  E-value=9.7e-31  Score=211.78  Aligned_cols=140  Identities=18%  Similarity=0.304  Sum_probs=129.0

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecCCcEEEE
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSAGEMFVI  153 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~GDv~~~  153 (221)
                      ++.||+++.++..+||+|+++|+++.+++++||++.+||||++++|++||++|++++++.+++| +.++++|++||+++|
T Consensus        20 ~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vv   99 (174)
T d1fxza2          20 NPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIV   99 (174)
T ss_dssp             ETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred             cCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEE
Confidence            6889999999999999999999999999999999999999999999999999999999998875 778889999999999


Q ss_pred             CCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          154 PRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       154 P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      |+|.+|++.|.+ +...+++++.++++....++  .++|+.   +|+|||+++|+++.+++++||+.
T Consensus       100 P~G~~h~~~n~~-~~~~~v~~~~~~~~~~~~lag~~s~l~~---~~~~vl~~af~v~~eei~~lk~~  162 (174)
T d1fxza2         100 PQNFVVAARSQS-DNFEYVSFKTNDTPMIGTLAGANSLLNA---LPEEVIQHTFNLKSQQARQIKNN  162 (174)
T ss_dssp             CTTCEEEEEECS-TTEEEEEEESSSSCCEEESSSTTCTGGG---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             CCCCEEEEEeCC-CCeEEEEEEccCCCCcccccchhhhhhc---CCHHHHHHHHCcCHHHHHHHHhc
Confidence            999999999954 67888888988888877775  466675   99999999999999999999875

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.97  E-value=5.9e-31  Score=212.91  Aligned_cols=139  Identities=19%  Similarity=0.336  Sum_probs=127.6

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-eEEEEEecCCcEEEE
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-VFYSKVLSAGEMFVI  153 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~GDv~~~  153 (221)
                      ++.||+++.++..+||+|+++|+++.++++.||++.+||||++++|++||++|++++++.++++ +.++.+|++||+++|
T Consensus        25 n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~i  104 (173)
T d1od5a2          25 NPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVV  104 (173)
T ss_dssp             ETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred             CCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEE
Confidence            7889999999999999999999999999999999999999999999999999999999998865 677889999999999


Q ss_pred             CCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          154 PRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       154 P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      |+|.+|++.| +++.+.+++++++.++.......++ ++   +|+|||+++|+++.+++++||++
T Consensus       105 P~G~~h~~~n-~~~~~~~v~~~~~~~~~~~~~~s~l-~~---~p~evl~~af~v~~e~v~~lk~~  164 (173)
T d1od5a2         105 PQNFVVAEQG-GEQGLEYVVFKTHHNAVSSYIKDVF-RA---IPSEVLSNSYNLGQSQVRQLKYQ  164 (173)
T ss_dssp             CTTCEEEEEE-EEEEEEEEEEESSTTCCEEEHHHHH-HH---SCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             CCCCEEEEEc-CCCceEEEEeecCCchhhhhHHHHH-Hh---CCHHHHHHHhCcCHHHHHHHHhc
Confidence            9999999988 5677899998888888877776554 54   99999999999999999999875

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.95  E-value=2.9e-28  Score=198.86  Aligned_cols=159  Identities=18%  Similarity=0.209  Sum_probs=133.6

Q ss_pred             ccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec
Q 027585           57 EVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT  136 (221)
Q Consensus        57 ~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~  136 (221)
                      +.+.+|+.|+.+.+.+.....+|+++.++..++|.|+++|+++.+++++||++..||||+++.|++||++|++++++.++
T Consensus         2 ~~~~~~~pfnl~~~~p~~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~   81 (185)
T d1uika2           2 TISSEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGI   81 (185)
T ss_dssp             GGGCSSSCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC
T ss_pred             ccccCCCccccccCCCceeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEcc
Confidence            56788899997766544456678999999999999999999999999999999999999999999999999999999976


Q ss_pred             CC--------------eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeecc--chhhcCCCCCCHHH
Q 027585          137 NN--------------VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVP--TTLFASTPSVPNQV  200 (221)
Q Consensus       137 ~~--------------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~lf~~~p~~~~~v  200 (221)
                      ++              +.+.+.|++||+++||+|.+|++.|.++....++.+.+..+...+...  .++|..   +|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~~~~~~~~~f~ag~~~~vl~~---~~~ev  158 (185)
T d1uika2          82 KEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAGSKDNVISQ---IPSQV  158 (185)
T ss_dssp             ------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEETCTTCCEEESSSSSSBGGGG---SCHHH
T ss_pred             CccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEEcCCCCccccccccccccccc---CCHHH
Confidence            43              567899999999999999999999988876666555555555444333  456665   99999


Q ss_pred             HHhhcCCCHHHHHHHHhh
Q 027585          201 LTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       201 la~~f~l~~~~v~~l~~~  218 (221)
                      |+++|+++.++++||++.
T Consensus       159 La~aF~v~~~~~~kl~~~  176 (185)
T d1uika2         159 QELAFPGSAKDIENLIKS  176 (185)
T ss_dssp             HHHHSSSCHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHhc
Confidence            999999999999999754

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=1.3e-27  Score=213.74  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=142.9

Q ss_pred             cccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEe
Q 027585           56 AEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFT  135 (221)
Q Consensus        56 ~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~  135 (221)
                      .......|.|+.+.++. ....||+++.+++.+||.+++  +++.+++++||++.++|||++++|+.||++|++++++.+
T Consensus       212 ~g~~~~~~~~~l~~q~P-~~~~gG~~~~~d~~~fp~~~~--is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~  288 (372)
T d1j58a_         212 NGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSKT--IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFA  288 (372)
T ss_dssp             TCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCCS--CEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEE
T ss_pred             CCCCCCcceeeccccCC-cccCCccEEEeccccCCccCc--eeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEc
Confidence            44445678898776553 556788999999999999984  789999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027585          136 TNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTI  215 (221)
Q Consensus       136 ~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l  215 (221)
                      .+|+.+++.+++||+++||+|..|+++|.|+++++++.+|++..++.+.+++|+.+    +|.+|++++|+++.+++++|
T Consensus       289 ~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~~~~l~~----~P~~vv~~~~~~~~e~~~~l  364 (372)
T d1j58a_         289 SDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAM----LPETFVQAHLDLGKDFTDVL  364 (372)
T ss_dssp             ETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHHHT----SCHHHHHHHHTCCHHHHTTC
T ss_pred             CCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeHHHHhhh----CCHHHHHHHhCcCHHHHHHH
Confidence            88988899999999999999999999999999999999999999999999999865    89999999999999999999


Q ss_pred             Hhhh
Q 027585          216 KSKF  219 (221)
Q Consensus       216 ~~~~  219 (221)
                      |++.
T Consensus       365 ~~~k  368 (372)
T d1j58a_         365 SKEK  368 (372)
T ss_dssp             CSSC
T ss_pred             HhcC
Confidence            8764

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.90  E-value=8.2e-24  Score=168.92  Aligned_cols=124  Identities=20%  Similarity=0.236  Sum_probs=102.8

Q ss_pred             cccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC-------eEEEEEecCCcEEEECCCCeEEEEecC
Q 027585           93 NTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN-------VFYSKVLSAGEMFVIPRGLIHFQQNVG  165 (221)
Q Consensus        93 ~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~-------~~~~~~L~~GDv~~~P~g~~H~~~N~g  165 (221)
                      +++++++.+++++||++..||||++|.|++||++|++++++.+++|       +.++..|++||+++||+|.+|+..|.+
T Consensus        16 n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~   95 (162)
T d2phla2          16 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS   95 (162)
T ss_dssp             TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESS
T ss_pred             CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCC
Confidence            5678999999999999999999999999999999999999998764       357789999999999999999999988


Q ss_pred             CccEEEEEEEcCCCCeeee------ccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 027585          166 EGKALAFTAFNSHLPGAVI------VPTTLFASTPSVPNQVLTKTFQVDDDLISTIKSK  218 (221)
Q Consensus       166 ~~~a~~l~~~~s~~pg~~~------~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~~~  218 (221)
                      +.+...+.+.+..+...+.      +..+++.+  .+|+|+|+++|+++.++++||++.
T Consensus        96 ~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~--~~~~evL~~aF~v~~eevekl~~~  152 (162)
T d2phla2          96 NVNFTGFGINANNNNRNLLAGKTDNVISSIGRA--LDGKDVLGLTFSGSGDEVMKLINK  152 (162)
T ss_dssp             SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTS--TTHHHHHHHHSSSCHHHHHHHHTT
T ss_pred             CceEEEEEecCCCCcceeecCccccchhhhccc--CCCHHHHHHHhCCCHHHHHHHHhh
Confidence            7666555554444433332      22344444  599999999999999999999764

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=7.1e-23  Score=182.79  Aligned_cols=150  Identities=21%  Similarity=0.302  Sum_probs=127.5

Q ss_pred             cCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe
Q 027585           60 SGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV  139 (221)
Q Consensus        60 ~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~  139 (221)
                      ...+.|+ +....+....||+++.++..++|.+.  +++..++++.||++.+||||+. .|+.||++|++++++.+++|+
T Consensus        38 ~~~~~~~-f~~~~~~~~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~-ae~~yVl~G~~~vt~Vd~~G~  113 (372)
T d1j58a_          38 VSNMKFS-FSDTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKE-AEWAYMIYGSARVTIVDEKGR  113 (372)
T ss_dssp             CCCCEEC-GGGSCCEEETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESS-CEEEEEEEEEEEEEEECTTSC
T ss_pred             cceeeec-cccccccccCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCc-ccEEEEEeCEEEEEEEeCCCc
Confidence            4445566 33333446789999999999999998  5899999999999999999997 599999999999999999998


Q ss_pred             EEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCee---eeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          140 FYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA---VIVPTTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       140 ~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~---~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      .+...|++||+++||+|.+|+++|. +++++++.+++..+++.   +...++ |..   +|.|+|+++|+++.+++++++
T Consensus       114 ~~~~~l~~GDv~~~P~G~~H~i~n~-~dg~e~l~vf~~~~~~~~~~f~~~~~-~~~---~p~evLa~af~v~~~~~~~i~  188 (372)
T d1j58a_         114 SFIDDVGEGDLWYFPSGLPHSIQAL-EEGAEFLLVFDDGSFSENSTFQLTDW-LAH---TPKEVIAANFGVTKEEISNLP  188 (372)
T ss_dssp             EEEEEEETTEEEEECTTCCEEEEEE-EEEEEEEEEESCTTCCGGGEEEHHHH-HHT---SCHHHHHHHHTCCTGGGTTSC
T ss_pred             EEEEEeccCCEEEECCCCEEEEEeC-CCCcEEEEEECCCCcccccceeeccc-ccc---CCHHHHHHhhCCCHHHHhhcc
Confidence            8888999999999999999999996 57799999999887653   444444 454   999999999999999999886


Q ss_pred             hh
Q 027585          217 SK  218 (221)
Q Consensus       217 ~~  218 (221)
                      +.
T Consensus       189 ~~  190 (372)
T d1j58a_         189 GK  190 (372)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.88  E-value=3.8e-22  Score=161.31  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=115.7

Q ss_pred             CCeEEecccCCCCc-ccCCeeEEEee--ccccCCCccc-ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec
Q 027585           61 GDFFFDGLSKEGNT-TIFGSAVTPAN--VLAFPGVNTL-GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT  136 (221)
Q Consensus        61 ~df~~~~l~~~~~~-~~~g~~v~~~~--~~~fP~l~~~-gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~  136 (221)
                      +.|+|+ ....... ...+|+++.+.  ....+.+.++ .+++.+++++||++..|| |++++|++||++|++++++..+
T Consensus         2 npy~F~-~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~   79 (178)
T d1dgwa_           2 NPYLFR-SNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP   79 (178)
T ss_dssp             CTTEEC-GGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCeecc-ccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecC
Confidence            346666 2222223 67778776664  4555667766 488999999999999999 6789999999999999999986


Q ss_pred             CCeEEEEEecCCcEEEECCCCeEEEEecCC-ccEEEEEEEcCC-CCee---eec-----cchhhcCCCCCCHHHHHhhcC
Q 027585          137 NNVFYSKVLSAGEMFVIPRGLIHFQQNVGE-GKALAFTAFNSH-LPGA---VIV-----PTTLFASTPSVPNQVLTKTFQ  206 (221)
Q Consensus       137 ~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~-~~a~~l~~~~s~-~pg~---~~~-----~~~lf~~~p~~~~~vla~~f~  206 (221)
                       ++.+++.|++||++++|+|.+||+.|.++ +++.++++.... .++.   +..     ..++|+.   +|+|+|+++|+
T Consensus        80 -~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~---~~~evL~~aF~  155 (178)
T d1dgwa_          80 -DGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSA---FSKNFLEASYD  155 (178)
T ss_dssp             -TEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGG---SCHHHHHHHHT
T ss_pred             -CceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHh---CCHHHHHHHhC
Confidence             44478999999999999999999999865 577777776433 2332   222     2356675   99999999999


Q ss_pred             CCHHHHHHHH
Q 027585          207 VDDDLISTIK  216 (221)
Q Consensus       207 l~~~~v~~l~  216 (221)
                      ++.++++|+.
T Consensus       156 v~~e~~~kl~  165 (178)
T d1dgwa_         156 SPYDEIEQTL  165 (178)
T ss_dssp             SCHHHHHHHT
T ss_pred             CCHHHHHHHH
Confidence            9999999985

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.87  E-value=3.8e-22  Score=160.23  Aligned_cols=137  Identities=15%  Similarity=0.220  Sum_probs=108.8

Q ss_pred             ccCCeeEEEeec--cccCCCcccc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585           75 TIFGSAVTPANV--LAFPGVNTLG-ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF  151 (221)
Q Consensus        75 ~~~g~~v~~~~~--~~fP~l~~~g-is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~  151 (221)
                      ...+|.++.+..  ...|.+.+++ +++.+++++||++..|| |++++|++||++|++++++..++++ .++.+++||++
T Consensus        19 ~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~-~~~~l~~GDv~   96 (170)
T d1uija1          19 ENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQ   96 (170)
T ss_dssp             ECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEE
T ss_pred             ccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCc-EEEEecCCcEE
Confidence            456777776653  5566777764 89999999999999999 5778999999999999999987554 58899999999


Q ss_pred             EECCCCeEEEEecCCcc-EEEEEEE-cCCCCeee---ec-----cchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          152 VIPRGLIHFQQNVGEGK-ALAFTAF-NSHLPGAV---IV-----PTTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       152 ~~P~g~~H~~~N~g~~~-a~~l~~~-~s~~pg~~---~~-----~~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +||+|.+|++.|.+++. .+++... .+.+++.+   .+     ..++|+.   +|+|||+++|++++++++||.
T Consensus        97 ~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~---~~~evLa~aF~v~~e~i~kl~  168 (170)
T d1uija1          97 RIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQG---FSHNILETSFHSEFEEINRVL  168 (170)
T ss_dssp             EECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGG---SCHHHHHHHHTSCHHHHHHHH
T ss_pred             EECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHh---CCHHHHHHHhCCCHHHHHHHh
Confidence            99999999999998754 4444433 23445432   22     2466775   999999999999999999985

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.84  E-value=7.9e-21  Score=156.53  Aligned_cols=137  Identities=12%  Similarity=0.147  Sum_probs=106.4

Q ss_pred             ccCCeeEEEeeccc--cCCCccc-ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585           75 TIFGSAVTPANVLA--FPGVNTL-GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF  151 (221)
Q Consensus        75 ~~~g~~v~~~~~~~--fP~l~~~-gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~  151 (221)
                      ...+|.++.+....  .+.+.++ ++.+.++++.||++..||| .+++|++||++|++++++..++ +..++.|++||++
T Consensus        15 ~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~~~~v~~~-~~~~~~l~~GDv~   92 (203)
T d1uika1          15 KNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYLIVILNGTAILTLVNND-DRDSYNLQSGDAL   92 (203)
T ss_dssp             ECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEECSS-CEEEEEEETTEEE
T ss_pred             ECCCCeEEEecccCccchhhccccceEEEEEEecCCCcccccc-CCCcEEEEEEEEEEEEEEEeCC-CeEEEEecCCCEE
Confidence            56678887776422  2223333 5788999999999999995 5789999999999999999864 4468999999999


Q ss_pred             EECCCCeEEEEecCC-ccEEEEEEEcCCC----Ceeeecc-----chhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          152 VIPRGLIHFQQNVGE-GKALAFTAFNSHL----PGAVIVP-----TTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       152 ~~P~g~~H~~~N~g~-~~a~~l~~~~s~~----pg~~~~~-----~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +||+|.+||+.|.++ +.+.++++....+    ...+.++     .++|+.   +++++|+++|+++.++++||.
T Consensus        93 ~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~g---f~~~vL~~aF~v~~e~~~kl~  164 (203)
T d1uika1          93 RVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQG---FSKNILEASYDTKFEEINKVL  164 (203)
T ss_dssp             EECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGG---SCHHHHHHHHTSCHHHHHHHT
T ss_pred             EECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHh---CCHHHHHHHhCCCHHHHHHHH
Confidence            999999999999886 4666666543222    1222222     367775   999999999999999999985

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.81  E-value=2.2e-19  Score=147.40  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=110.2

Q ss_pred             ccCCeeEEEeec--cccCCCccc-ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEE-----EEEec
Q 027585           75 TIFGSAVTPANV--LAFPGVNTL-GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFY-----SKVLS  146 (221)
Q Consensus        75 ~~~g~~v~~~~~--~~fP~l~~~-gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~-----~~~L~  146 (221)
                      ...+|+++.+..  ...+.|.++ ++.+.++++.|+++..|||+ ++.+++||++|++++++..++++..     ...++
T Consensus        17 ~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~   95 (200)
T d2phla1          17 KNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPI   95 (200)
T ss_dssp             EETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTT
T ss_pred             ECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCceeehhhccCcc
Confidence            567788877754  344555554 47899999999999999975 6899999999999999999876432     23699


Q ss_pred             CCcEEEECCCCeEEEEecCC-ccEEEEEEEcCC---CCeeeecc-----chhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 027585          147 AGEMFVIPRGLIHFQQNVGE-GKALAFTAFNSH---LPGAVIVP-----TTLFASTPSVPNQVLTKTFQVDDDLISTIK  216 (221)
Q Consensus       147 ~GDv~~~P~g~~H~~~N~g~-~~a~~l~~~~s~---~pg~~~~~-----~~lf~~~p~~~~~vla~~f~l~~~~v~~l~  216 (221)
                      +||++++|+|.+||+.|.++ ++++++.+..+.   ++..+.++     .++|+.   ++.++|+++|+++.+++++|.
T Consensus        96 ~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~---f~~evLa~aF~v~~e~~~kl~  171 (200)
T d2phla1          96 FSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQE---FSKHILEASFNSKFEEINRVL  171 (200)
T ss_dssp             SCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGG---SCHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHc---CCHHHHHHHcCCCHHHHHHHH
Confidence            99999999999999999874 688888776333   34444443     367885   999999999999999999995

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.75  E-value=3.7e-18  Score=143.73  Aligned_cols=138  Identities=19%  Similarity=0.373  Sum_probs=114.7

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC----------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNN----------------  138 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------  138 (221)
                      ...||.+..++ .+-|.|...|+++.+.+|.|+++..||+. ++..++||++|++.+++.-+.-                
T Consensus        18 ~sE~G~~E~wd-~~~~qlqcagV~~~r~~I~p~gL~lP~ys-~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~   95 (245)
T d1od5a1          18 ESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS   95 (245)
T ss_dssp             EETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCCCEEECC--------
T ss_pred             cccCCeEEeCC-CCCHHHhhcCceeEEEEEcCCcccccccc-CCCeEEEEEeCEEEEEEEeCCChhhhcchhhccccccc
Confidence            45677666666 45588999999999999999999999974 5799999999999999995320                


Q ss_pred             ---------eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC--------Ceeeeccc--------------
Q 027585          139 ---------VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL--------PGAVIVPT--------------  187 (221)
Q Consensus       139 ---------~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~~--------------  187 (221)
                               +.....|++||++++|+|++||++|.|+++++++++++..|        +..+.++.              
T Consensus        96 ~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~q~  175 (245)
T d1od5a1          96 RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQ  175 (245)
T ss_dssp             -------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC---
T ss_pred             ccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhcccch
Confidence                     11245699999999999999999999999999999986544        34444442              


Q ss_pred             ---------------------hhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          188 ---------------------TLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       188 ---------------------~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                                           ++|..   ++.++||+||+++.++++||+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~nif~g---F~~~~La~Af~v~~e~~~klq~  223 (245)
T d1od5a1         176 QQKSHGGRKQGQHQQQEEEGGSVLSG---FSKHFLAQSFNTNEDTAEKLRS  223 (245)
T ss_dssp             ------------------CCCCTTTT---SCHHHHHHHTTCCHHHHHHTTC
T ss_pred             hhhhcccccccccccccccCCCeeec---CCHHHHHHHHCCCHHHHHHHhC
Confidence                                 79985   9999999999999999999974

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.73  E-value=1.3e-17  Score=139.80  Aligned_cols=138  Identities=14%  Similarity=0.284  Sum_probs=114.7

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec------------------
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT------------------  136 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~------------------  136 (221)
                      ...||.+..++. .-+.+...|+.+.+.+|.|+++..||+ .++..++||++|++.+++.-+                  
T Consensus        18 ~sE~G~~E~~d~-~~~qlqcagV~~~r~~I~p~gL~lP~y-~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~   95 (239)
T d1fxza1          18 ESEGGLIETWNP-NNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS   95 (239)
T ss_dssp             EETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEE-ESSCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ccCCceEEecCC-CChhhhhccchhheeeeccCceeccee-cCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccc
Confidence            566776666664 447888889999999999999999997 567999999999999999832                  


Q ss_pred             ----CCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCC--------Ceeeeccc-----------------
Q 027585          137 ----NNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHL--------PGAVIVPT-----------------  187 (221)
Q Consensus       137 ----~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~--------pg~~~~~~-----------------  187 (221)
                          +.+.....|++||++.+|+|++||++|.|+++++++++++..+        +..+.++.                 
T Consensus        96 ~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~~~~~~~~~~  175 (239)
T d1fxza1          96 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  175 (239)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccccccccccccccc
Confidence                1122367999999999999999999999999999999985544        34455542                 


Q ss_pred             ---------------hhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 027585          188 ---------------TLFASTPSVPNQVLTKTFQVDDDLISTIKS  217 (221)
Q Consensus       188 ---------------~lf~~~p~~~~~vla~~f~l~~~~v~~l~~  217 (221)
                                     ++|+.   ++.++|+.||+++.++++||+.
T Consensus       176 ~~~~~~~~~~~~~~~ni~~g---Fs~~~La~Afnv~~e~~~klq~  217 (239)
T d1fxza1         176 SQKGKHQQEEENEGGSILSG---FTLEFLEHAFSVDKQIAKNLQG  217 (239)
T ss_dssp             -------------CCCGGGG---SCHHHHHHHHTCCHHHHHHHSC
T ss_pred             cccccccccccccCCCcccc---cCHHHHHHHHCcCHHHHHHHhc
Confidence                           68986   9999999999999999999974

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.9e-16  Score=117.29  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             CcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEE
Q 027585           92 VNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus        92 l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      +.+....+.+++++||+..++|+|++.+|++||++|++++.++++     .+.+++||++++|+|..|+++|.|++++++
T Consensus        34 ~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~  108 (115)
T d1o4ta_          34 MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSIENTGNTDLEF  108 (115)
T ss_dssp             TTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCEEEEECCSSSCEEE
T ss_pred             cCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCe-----eEEeeccEEEEECCCCeEEEEECCCCCEEE
Confidence            334445678899999999999999987899999999999998877     899999999999999999999999999999


Q ss_pred             EEEE
Q 027585          172 FTAF  175 (221)
Q Consensus       172 l~~~  175 (221)
                      +++.
T Consensus       109 l~I~  112 (115)
T d1o4ta_         109 LAVI  112 (115)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=4e-16  Score=113.79  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+..+.++||+..++|+|++.+|++||++|++++.++++     ++.+++||++++|+|..|+++|.|+++++++.++
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~  101 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVRNESASPALLLVVT  101 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeee-----EEEecceEEEEeCCCCEEEeEECCCCCEEEEEEE
Confidence            47788899999999999999988899999999999999877     8999999999999999999999999999999988


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      +.
T Consensus       102 ~P  103 (105)
T d1v70a_         102 AP  103 (105)
T ss_dssp             ES
T ss_pred             CC
Confidence            64

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.62  E-value=4.2e-15  Score=117.28  Aligned_cols=110  Identities=17%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC----CeEEEEEecCCcE
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN----NVFYSKVLSAGEM  150 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~L~~GDv  150 (221)
                      ...|...+........+++  .+.+.+.+++||+..++|+|+. .|++||++|++++.+++..    ++..++.+++||+
T Consensus        21 g~~g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H~~-~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~   97 (160)
T d1lr5a_          21 GIEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRHSC-EEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTT   97 (160)
T ss_dssp             TCTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEESS-CEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEE
T ss_pred             CCCCceEEEeecccCCCcc--EEEEEEEEECCCccccceeccc-cEEEEEEeeeEEEEECCccccccccceEEEecCCCE
Confidence            3445555555555555655  4789999999999999999975 9999999999999998743    2335899999999


Q ss_pred             EEECCCCeEEEEecCC-ccEEEEEEEcCCCCeeeeccc
Q 027585          151 FVIPRGLIHFQQNVGE-GKALAFTAFNSHLPGAVIVPT  187 (221)
Q Consensus       151 ~~~P~g~~H~~~N~g~-~~a~~l~~~~s~~pg~~~~~~  187 (221)
                      +++|+|.+|.++|.|+ ++++++++++.+....+...+
T Consensus        98 ~~iP~~~~H~~~N~g~~E~l~~l~i~~~~p~~~~~~~d  135 (160)
T d1lr5a_          98 FSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDD  135 (160)
T ss_dssp             EEECTTCCEEEECCCSSSCEEEEEEEESSSCCEEEESS
T ss_pred             EEeCCCCcEEEEECCCCCCEEEEEEECCCCceEEeccc
Confidence            9999999999999986 899999998866665555544

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.62  E-value=1.5e-15  Score=110.66  Aligned_cols=82  Identities=20%  Similarity=0.131  Sum_probs=70.8

Q ss_pred             cCCCcccceEEEEEEEcCCCcC--CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC
Q 027585           89 FPGVNTLGISMNRVDFAPGGLN--PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus        89 fP~l~~~gis~~~v~l~Pgg~~--~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +|.....++.+.+++++||+..  ++|+|.. .|++||++|++++.++++     .++|++||+++||++..|++.|.|+
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~-~E~~~Vl~G~~~~~~~~~-----~~~l~~GD~~~~~~~~~H~~~n~~~   87 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHALGV-IEYIHVLEGIMKVFFDEQ-----WHELQQGEHIRFFSDQPHGYAAVTE   87 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCSTTC-EEEEEEEESCEEEEETTE-----EEEECTTCEEEEECSSSEEEEESSS
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccCCc-EEEEEEEcCceEEEecce-----EEEecCCCEEEECCCCeEEEEeCCc
Confidence            4544556799999999999865  7787765 999999999999999877     9999999999999999999999999


Q ss_pred             ccEEEEEEEc
Q 027585          167 GKALAFTAFN  176 (221)
Q Consensus       167 ~~a~~l~~~~  176 (221)
                      +++.++.+..
T Consensus        88 ~~~~~~vi~~   97 (99)
T d1y9qa2          88 KAVFQNIVAY   97 (99)
T ss_dssp             CEEEEEEEEC
T ss_pred             cCEEEEEEeC
Confidence            9986666543

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=2.3e-15  Score=111.45  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=71.0

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+.+.++.++||...++|+|+. +|++||++|++.+.++++    ..+.+++||++++|+|..|+++|.|+++++++++.
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~~-~e~~~Vl~G~~~~~v~~~----e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~   99 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSNS-YVHLIIIKGEMTLTLEDQ----EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVK   99 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECSS-CEEEEEEESEEEEEETTS----CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEE
T ss_pred             CEEEEEEEECCCCcChhhcccc-cEEEEEEeeeEEEEEecc----cEEEeecceEeeccCCceEEEEcCCCCcEEEEEEE
Confidence            4679999999999999999985 899999999999999874    15789999999999999999999999999999876


Q ss_pred             cCCCCe
Q 027585          176 NSHLPG  181 (221)
Q Consensus       176 ~s~~pg  181 (221)
                      + +.|.
T Consensus       100 ~-P~p~  104 (108)
T d2b8ma1         100 A-PHPK  104 (108)
T ss_dssp             C-SCGG
T ss_pred             C-CCCc
Confidence            4 4443

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=1.7e-15  Score=112.82  Aligned_cols=76  Identities=25%  Similarity=0.278  Sum_probs=71.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+..++++||+..++|+|+. .|++||++|++++.++++     .+.+++||++++|+|..|++.|.|++++++++++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~~-~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHPW-EHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSS-CEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECCC-cEEEEEEEceeEEEEeee-----eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence            5788899999999999999986 899999999999998877     8999999999999999999999999999999998


Q ss_pred             cC
Q 027585          176 NS  177 (221)
Q Consensus       176 ~s  177 (221)
                      ..
T Consensus       109 p~  110 (114)
T d1vj2a_         109 PK  110 (114)
T ss_dssp             EG
T ss_pred             CC
Confidence            53

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=1.3e-13  Score=105.89  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             EEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEE
Q 027585           81 VTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHF  160 (221)
Q Consensus        81 v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~  160 (221)
                      +..+.....|..   .+.+.+++++||+..+||+|+. .|++||++|+++++..+.    ..+.+++||++++|+|..|+
T Consensus        22 ~~~L~~~~~~~~---~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g~----~~~~~~~Gd~v~ippg~~H~   93 (134)
T d2f4pa1          22 VKMLVTDENGVF---NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGK----PARILKKGDVVEIPPNVVHW   93 (134)
T ss_dssp             EEEEECCTTCSS---SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTS----CCEEEETTCEEEECTTCCEE
T ss_pred             EeeccCCCCCCc---eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECCc----ceEEEcCCCeEEECCCCceE
Confidence            344444444433   4789999999999999999997 899999999999988543    15899999999999999999


Q ss_pred             EEecCCccEEEEEEEcCCCCee
Q 027585          161 QQNVGEGKALAFTAFNSHLPGA  182 (221)
Q Consensus       161 ~~N~g~~~a~~l~~~~s~~pg~  182 (221)
                      ..|.+++++..|++....+.+.
T Consensus        94 ~~a~~~~~~~~lai~~~~~~~~  115 (134)
T d2f4pa1          94 HGAAPDEELVHIGISTQVHLGP  115 (134)
T ss_dssp             EEEBTTBCEEEEEEECCGGGCC
T ss_pred             CccCCCCcEEEEEEEecCCCCc
Confidence            9999999999999987665554

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.40  E-value=5.7e-13  Score=98.57  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=63.5

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+..+.++||...++|+|+. +|++||++|++++.++++     .+.+++||++++|+|..|.++|.++  .+++++.
T Consensus        36 ~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~a~~~--~~~l~~v  107 (112)
T d1yhfa1          36 DLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALYAVEA--FQMLLVV  107 (112)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTSCEEEEESSC--EEEEEEE
T ss_pred             CcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEEccE-----EEEecCCEEEEcCCCCeEEeEECCC--cEEEEEE
Confidence            5678889999999999999997 999999999999999877     8999999999999999999999755  4444443

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.38  E-value=3.6e-12  Score=102.99  Aligned_cols=84  Identities=17%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             ceEEEEEEEcCCCcCC------CCCCC--CCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           96 GISMNRVDFAPGGLNP------PHSHP--RASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~------~H~Hp--~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      ++.+....+.||....      .|+|.  +..|++||++|++.+.+.+.++......+++||++++|+|..|.+.|+|++
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde  145 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCC
Confidence            5788889999997543      47764  457999999999999998877666688999999999999999999999999


Q ss_pred             cEEEEEEEcCCC
Q 027585          168 KALAFTAFNSHL  179 (221)
Q Consensus       168 ~a~~l~~~~s~~  179 (221)
                      ++++++++.+..
T Consensus       146 ~L~~l~v~~~~~  157 (190)
T d1x82a_         146 PFIFLAIYPADA  157 (190)
T ss_dssp             CEEEEEEEETTC
T ss_pred             CEEEEEEECCCc
Confidence            999999997543

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.34  E-value=6.2e-12  Score=94.62  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             ceEEEEEEEcCCCcC--CC-CCCCCCcEEEEEEeCEEEEEEEec-CCeEEEEEecCCcEEEECCCCeEEEEec-CCccEE
Q 027585           96 GISMNRVDFAPGGLN--PP-HSHPRASESGIVIKGKLLVGFFTT-NNVFYSKVLSAGEMFVIPRGLIHFQQNV-GEGKAL  170 (221)
Q Consensus        96 gis~~~v~l~Pgg~~--~~-H~Hp~a~Ei~yVl~G~~~v~~~~~-~~~~~~~~L~~GDv~~~P~g~~H~~~N~-g~~~a~  170 (221)
                      .+...++++.|++..  .+ |.|++ .|++||++|++++.++++ +++  +++|++||+++||++.+|.+.|. |+++++
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~~-eE~~yVl~G~~~~~~g~~~~~~--~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~  116 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSAK  116 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCccc-EEEEEEEEEEEEEEEecccCCE--EEEEccCcEEEeCCCCCEEEEcCCCCccEE
Confidence            467888999998854  23 33665 999999999999999764 244  78999999999999999999997 789999


Q ss_pred             EEEEE
Q 027585          171 AFTAF  175 (221)
Q Consensus       171 ~l~~~  175 (221)
                      ++++.
T Consensus       117 ~l~Vt  121 (122)
T d2bnma2         117 LIAVN  121 (122)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88863

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.32  E-value=7.5e-12  Score=104.64  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             CCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           90 PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        90 P~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      |......+.+..++++||+..++|.|+..+|++||++|++++.++++     .+.+++||++++|++.+|+++|.|++++
T Consensus       158 p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~~-----~~~v~~GD~i~~~~~~~H~~~n~g~~~~  232 (245)
T d1sfna_         158 PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN-----YYPVTAGDIIWMGAHCPQWYGALGRNWS  232 (245)
T ss_dssp             CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSSCE
T ss_pred             CcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEeeEeCCCCCE
Confidence            33334458899999999999998765455999999999999999887     9999999999999999999999999999


Q ss_pred             EEEEEEc
Q 027585          170 LAFTAFN  176 (221)
Q Consensus       170 ~~l~~~~  176 (221)
                      ++|..-+
T Consensus       233 ~~l~~k~  239 (245)
T d1sfna_         233 KYLLYKD  239 (245)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9886554

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.31  E-value=9.3e-12  Score=104.25  Aligned_cols=82  Identities=13%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecC-Cc
Q 027585           89 FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVG-EG  167 (221)
Q Consensus        89 fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g-~~  167 (221)
                      +|......+.+..++++||+..++|.|+..+|++||++|++++.++++     .+.+++||++++|++.+|++.|.| ++
T Consensus       160 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~~-----~~~~~~GD~i~~~~~~pH~~~n~G~~~  234 (250)
T d1sefa_         160 LPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE-----WYPVEKGDYIFMSAYVPQAAYAVGREE  234 (250)
T ss_dssp             SCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEECSSS
T ss_pred             cCccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEEeEcCCCCC
Confidence            455555578999999999999987554455999999999999999887     999999999999999999999999 46


Q ss_pred             cEEEEEEE
Q 027585          168 KALAFTAF  175 (221)
Q Consensus       168 ~a~~l~~~  175 (221)
                      +++++..-
T Consensus       235 ~~~~l~~k  242 (250)
T d1sefa_         235 PLMYVYSK  242 (250)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEe
Confidence            77776533

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=8.6e-12  Score=108.00  Aligned_cols=77  Identities=19%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++.+++++||+..++|+|+.++|++||++|++++.++++     ++.|++||++++|+|.+|.++|.++ ++.++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECST-TEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECCE-----EEEEcCCCEEEeCCCCeEEEEEcCC-CeEEEEEE
Confidence            47899999999999999999887999999999999998877     8999999999999999999999987 45666666


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      +..
T Consensus       115 ~p~  117 (330)
T d1y3ta1         115 MKG  117 (330)
T ss_dssp             ETT
T ss_pred             CCc
Confidence            543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=1.5e-11  Score=104.57  Aligned_cols=77  Identities=18%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             cceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ..+.+..++++||+.. .+|+|.. +|++||++|++++.++++     .+.+++||++++|++.+|+++|.|+++++++.
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~~-ee~~~vl~G~~~~~~~~~-----~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~  260 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHVM-EHGLYVLEGKAVYRLNQD-----WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  260 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSE-EEEEEEEECEEEEEETTE-----EEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             cceEEEEEEEccCCcccccccccc-ceEEEEEccEEEEEECCE-----EEEecCCCEEEECCCCCEEeEeCCCCCEEEEE
Confidence            4588999999999865 5799986 999999999999999887     99999999999999999999999999999998


Q ss_pred             EEcC
Q 027585          174 AFNS  177 (221)
Q Consensus       174 ~~~s  177 (221)
                      ..+-
T Consensus       261 ~kd~  264 (273)
T d1sq4a_         261 YKDV  264 (273)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7653

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.27  E-value=1.7e-11  Score=107.10  Aligned_cols=82  Identities=18%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             eEEEEEEEcCCCc--CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           97 ISMNRVDFAPGGL--NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        97 is~~~v~l~Pgg~--~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      +++.++.++||+.  .++|+|.+..|++||++|++++++.+.++...+..|++||++++|+|.+|.++|.++ +++++.+
T Consensus        46 ~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~-~~~~l~v  124 (348)
T d1juha_          46 FTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTGV  124 (348)
T ss_dssp             CEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TEEEEEE
T ss_pred             EEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCC-CcEEEEE
Confidence            6889999999985  578999988999999999999999876554458999999999999999999999976 5777877


Q ss_pred             EcCCC
Q 027585          175 FNSHL  179 (221)
Q Consensus       175 ~~s~~  179 (221)
                      ++...
T Consensus       125 ~~pg~  129 (348)
T d1juha_         125 IVPGG  129 (348)
T ss_dssp             EESSC
T ss_pred             ECCCc
Confidence            76544

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=1.2e-11  Score=106.96  Aligned_cols=77  Identities=12%  Similarity=0.083  Sum_probs=69.7

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..++++||+..++|+|+..+|++||++|+++++++++     ++.+++||++++|+|..|.+.|.+ ++++++.++
T Consensus       213 ~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v~~~-----~~~~~~Gd~~~vP~g~~H~~~~~~-~~~~~l~~~  286 (330)
T d1y3ta1         213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYRLDS-HYTKMVGVL  286 (330)
T ss_dssp             SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECS-SSEEEEEEE
T ss_pred             cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEECCE-----EEEeCCCCEEEECcCCcEEeEeCC-CCeEEEEEE
Confidence            37788899999999999999987999999999999999877     899999999999999999999975 578999888


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      ...
T Consensus       287 ~p~  289 (330)
T d1y3ta1         287 VPG  289 (330)
T ss_dssp             ESS
T ss_pred             CCc
Confidence            654

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=6.6e-12  Score=105.20  Aligned_cols=76  Identities=17%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             cceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLN-PPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~-~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .++.+.+++++||+.. .+|.|++.+|++||++|++++.++++     .+.|++||.+++|+|..|.+.|.+++++++++
T Consensus        46 a~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~  120 (250)
T d1sefa_          46 ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-----THELEAGGYAYFTPEMKMYLANAQEADTEVFL  120 (250)
T ss_dssp             CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTSCCEEEESSSSCEEEEE
T ss_pred             CcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECCE-----EEEEcCCCEEEEcCCCcEEEEECCCCCEEEEE
Confidence            3578999999999864 44555666889999999999999887     89999999999999999999999999999998


Q ss_pred             EE
Q 027585          174 AF  175 (221)
Q Consensus       174 ~~  175 (221)
                      +-
T Consensus       121 v~  122 (250)
T d1sefa_         121 YK  122 (250)
T ss_dssp             EE
T ss_pred             EE
Confidence            83

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8.5e-12  Score=104.56  Aligned_cols=82  Identities=16%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             cCCCcccceEEEEEEEcCCCcCC-CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           89 FPGVNTLGISMNRVDFAPGGLNP-PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        89 fP~l~~~gis~~~v~l~Pgg~~~-~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      .|.-...++.+..++++||+..+ .|.|.. +|++||++|++++.++++     .+.+++||++++|++.+|++.|.|.+
T Consensus       163 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~-ee~~~vl~G~g~~~i~~~-----~~~~~~GD~i~~~~~~ph~~~~~g~~  236 (253)
T d1rc6a_         163 LPKELGFDMNMHILSFAPGASHGYIETHVQ-EHGAYILSGQGVYNLDNN-----WIPVKKGDYIFMGAYSLQAGYGVGRG  236 (253)
T ss_dssp             SCCSTTCSEEEEEEEECTTCCBEEEEEESS-CEEEEEEESEEEEESSSC-----EEEEETTCEEEECSSEEEEEEEC---
T ss_pred             cCccccccEEEEEEEECCCceEeEEEeCCc-eEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEeeeeCCCC
Confidence            34444557899999999999876 677865 999999999999999887     99999999999999999999999976


Q ss_pred             cEEEEEEEc
Q 027585          168 KALAFTAFN  176 (221)
Q Consensus       168 ~a~~l~~~~  176 (221)
                      ++..+..+.
T Consensus       237 ~~~~~~~~~  245 (253)
T d1rc6a_         237 EAFSYIYSK  245 (253)
T ss_dssp             -CEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            654444443

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=2.3e-11  Score=103.36  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             ceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGL-NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~-~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+++..++++||+. ..+|.|++++|++||++|++++.++++     ++.|++||.+++|+|..|.++|.|+++++++++
T Consensus        65 ~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g~-----~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i  139 (273)
T d1sq4a_          65 TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ-----VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWI  139 (273)
T ss_dssp             SCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC-----EEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECCE-----EEEecCCCEEEECCCCcEeeeecCCCCEEEEEE
Confidence            48999999999985 566667788999999999999999887     999999999999999999999999999999987


Q ss_pred             E
Q 027585          175 F  175 (221)
Q Consensus       175 ~  175 (221)
                      .
T Consensus       140 ~  140 (273)
T d1sq4a_         140 R  140 (273)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.20  E-value=1.7e-11  Score=92.59  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=61.3

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+++..+.++||.   .|||+..+|++||++|++++.++++     .+.|++||+++||+|..|++.|.  ++++++.++
T Consensus        53 ~~~~~~~~~~~g~---~~~~~~~~E~~~vl~G~~~~~~~g~-----~~~l~~Gd~~~~p~g~~h~~~~~--~~~~~~~v~  122 (128)
T d2pyta1          53 SMAAGFMQWDNAF---FPWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVA  122 (128)
T ss_dssp             SSEEEEEEEEEEE---EEEECSSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             ceEEEEEEECCCc---cceeCCccEEEEEEEeEEEEEECCE-----EEEecCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            4677778888875   3667677999999999999998776     89999999999999999999996  457777777


Q ss_pred             cCC
Q 027585          176 NSH  178 (221)
Q Consensus       176 ~s~  178 (221)
                      ...
T Consensus       123 ~Pa  125 (128)
T d2pyta1         123 WPA  125 (128)
T ss_dssp             EST
T ss_pred             CCC
Confidence            543

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.7e-11  Score=105.43  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      ++.+....++||+..++|+|+. +|+.||++|++++...+.    .+..+++||++++|+|..|.+.|.|++++.++.++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~~-~e~~~vl~G~g~~t~~~~----~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHNQ-SALRFIVEGKGAFTAVDG----ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEESS-CEEEEEEECSSCEEEETT----EEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cceeeeEEECCCCccccccCch-hheEEEEEeeEEEEEecC----EEEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            4678888999999999999986 899999999998865543    17899999999999999999999999999999998


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      +
T Consensus       128 d  128 (308)
T d2d40a1         128 D  128 (308)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.5e-11  Score=99.52  Aligned_cols=76  Identities=17%  Similarity=0.061  Sum_probs=66.7

Q ss_pred             cceEEEEEEEcCCCcCCCCCC-CCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           95 LGISMNRVDFAPGGLNPPHSH-PRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        95 ~gis~~~v~l~Pgg~~~~H~H-p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .++.+..++++||+....|+| ++.+|++||++|++++.++++     ++.|++||++++|+|..|.+.|.|+++++++.
T Consensus        49 ~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~  123 (253)
T d1rc6a_          49 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-----TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  123 (253)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            368899999999987554444 455779999999999998877     89999999999999999999999999999998


Q ss_pred             EE
Q 027585          174 AF  175 (221)
Q Consensus       174 ~~  175 (221)
                      +.
T Consensus       124 v~  125 (253)
T d1rc6a_         124 YK  125 (253)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.10  E-value=1.8e-10  Score=100.46  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+++..+.+.||+...+|||+.++|++||++|++++.+.+.    .+..|++||++++|+|..|.+.|.+.....++..
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~----~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~  322 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDY----AATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVS  322 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTS----CCEEECTTCEEEECTTCCEEEEESSSSEEEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCCc----ceEEecCCCEEEECCCCcEEEEeCCCCcEEEEEE
Confidence            46788889999999999999999999999999999999653    1689999999999999999999998877555443

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.01  E-value=5.6e-10  Score=93.01  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             CcccccCCeEEecccCCCCcccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEE
Q 027585           55 AAEVTSGDFFFDGLSKEGNTTIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFF  134 (221)
Q Consensus        55 p~~~~~~df~~~~l~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~  134 (221)
                      -+.+++++|+.+.+  |+   ..+..++..-.......  ..+++..++++||+..  |.|. .+|++||++|++++.++
T Consensus        15 ~a~i~P~~~v~s~~--P~---w~~~~~~~l~sP~~g~~--~~F~~~~v~~~pGg~~--~~~~-~E~~~~Vl~G~~~~~~~   84 (245)
T d1sfna_          15 HAVITPETFVRTAL--AE---WPGSAIVLHIAPVVGLG--ARFVQFTAEMPAGAQA--TESV-YQRFAFVLSGEVDVAVG   84 (245)
T ss_dssp             EEEECGGGCCCBCC--TT---STTCEEEEEECTTSTTC--CSSEEEEEEECTTCEE--ECCS-SEEEEEEEEEEEEEECS
T ss_pred             eEEECCcccEecCC--CC---CCCcEEEEEecCCCCCC--CceEEEEEEECCCCCC--CCCC-ccEEEEEEECEEEEEEC
Confidence            46677788887755  32   22333333333332211  2478999999999864  4444 48999999999999988


Q ss_pred             ecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585          135 TTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       135 ~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ++     .+.|++||.+++|+|..|.+.|.|+++++++-...
T Consensus        85 g~-----~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~~  121 (245)
T d1sfna_          85 GE-----TRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY  121 (245)
T ss_dssp             SC-----EEEECTTEEEEECTTCCCEEEEEEEEEEEEEEECC
T ss_pred             CE-----EEEecCCCEEEeCCCCcEEEEeCCCccEEEEEeec
Confidence            77     99999999999999999999999999988886543

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.00  E-value=1.7e-09  Score=94.74  Aligned_cols=93  Identities=18%  Similarity=0.087  Sum_probs=74.4

Q ss_pred             ccCCeeEEEeeccc-cCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEE
Q 027585           75 TIFGSAVTPANVLA-FPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVI  153 (221)
Q Consensus        75 ~~~g~~v~~~~~~~-fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~  153 (221)
                      ...|..+...+..+ .+...+  +.+....++||....+|+|.. +|++||++|++++.++++     ++.+++||++++
T Consensus       235 ~~~g~~l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH~~-~~v~~v~~G~g~~~i~g~-----~~~~~~GDv~~v  306 (355)
T d3bu7a1         235 PYDGLILRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRHTG-NVIYNVAKGQGYSIVGGK-----RFDWSEHDIFCV  306 (355)
T ss_dssp             TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEESS-CEEEEEEECCEEEEETTE-----EEEECTTCEEEE
T ss_pred             CCCceEEEeccccccCCCcce--eeEEEEEECCCCccCCcCccC-cEEEEEEECcEEEEECCE-----EEEeeCCCEEEe
Confidence            34566666666543 344554  566667899999999999986 899999999999999877     899999999999


Q ss_pred             CCCCeEEEEecCCccEEEEEEE
Q 027585          154 PRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       154 P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      |++..|...|.++++..++..+
T Consensus       307 P~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         307 PAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             CTTCCEEEEECCSSCCEEEEEE
T ss_pred             CCCCcEEeecCCCCCcEEEEEe
Confidence            9999999999987654444444

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.96  E-value=1e-09  Score=95.93  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      .+......+.||...++|+|.. .|+.||++|+..+..++.  +  ...+++||++++|+|..|...|.|++++.++.++
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H~~-~~~~~vi~G~g~~t~v~g--~--~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~  160 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRHSQ-NAFRFVVEGEGVWTVVNG--D--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  160 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEESS-CEEEEEEECEEEEEEETT--E--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             hhhhheEEECCCCcCCcccccc-ceeEEEEECCcEEEEECC--E--EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEee
Confidence            5677888999999999999975 999999999987665543  2  7899999999999999999999999999999988


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      +
T Consensus       161 d  161 (351)
T d2phda1         161 D  161 (351)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.6e-08  Score=86.42  Aligned_cols=89  Identities=16%  Similarity=0.007  Sum_probs=70.8

Q ss_pred             cCCeeEEEeecccc-CCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEEC
Q 027585           76 IFGSAVTPANVLAF-PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIP  154 (221)
Q Consensus        76 ~~g~~v~~~~~~~f-P~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P  154 (221)
                      ..|..+...+.... +...  .+.+....++||....+|+|.. .|++||++|++++.++++     +..+++||++++|
T Consensus       202 ~~g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h~~-~~~~~v~~G~g~~~v~~~-----~~~~~~GD~~~vP  273 (308)
T d2d40a1         202 WDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVARTTD-STIYHVVEGSGQVIIGNE-----TFSFSAKDIFVVP  273 (308)
T ss_dssp             TTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEESS-CEEEEEEEEEEEEEETTE-----EEEEETTCEEEEC
T ss_pred             CCceEEEeeccccccCccc--eeEEEEEEccCCCccCCccCCh-heEEEEEeCcEEEEECCE-----EEEEeCCCEEEeC
Confidence            34666666555443 3344  3667778899999999999975 899999999999999776     8999999999999


Q ss_pred             CCCeEEEEecCCccEEEEEE
Q 027585          155 RGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       155 ~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ++..|...|.+  +..++.+
T Consensus       274 ~~~~h~~~~~~--d~~l~~v  291 (308)
T d2d40a1         274 TWHGVSFQTTQ--DSVLFSF  291 (308)
T ss_dssp             TTCCEEEEEEE--EEEEEEE
T ss_pred             CCCeEEEEcCC--CeEEEEE
Confidence            99999999965  4555555

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.74  E-value=4.1e-08  Score=85.53  Aligned_cols=88  Identities=19%  Similarity=0.072  Sum_probs=69.9

Q ss_pred             CCeeEEEeecc-ccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC
Q 027585           77 FGSAVTPANVL-AFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR  155 (221)
Q Consensus        77 ~g~~v~~~~~~-~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~  155 (221)
                      .+..+...+.. ..+...++  .+....++||....+|+|.. .|+.||++|++++.++++     ++.+++||++++|+
T Consensus       244 g~~~l~yvnp~tg~~~~~t~--~~~~~~l~pG~~~~~hrh~~-~~v~~vi~G~g~~~i~~~-----~~~~~~gDvf~vP~  315 (351)
T d2phda1         244 GHAAIRYVNPTTGGDVMPTL--RCEFHRLRAGTETATRNEVG-STVFQVFEGAGAVVMNGE-----TTKLEKGDMFVVPS  315 (351)
T ss_dssp             TEEEEEEBCTTTSSBSBTTB--EEEEEEECTTCBCCCEEESS-CEEEEEEESCEEEEETTE-----EEEECTTCEEEECT
T ss_pred             cceeEEEeccccCCCcCCcc--eEEEEEecCCCcCCCccccC-cEEEEEEeCcEEEEECCE-----EEEEcCCCEEEeCC
Confidence            34455555543 35666654  45556689999999999976 899999999999999877     89999999999999


Q ss_pred             CCeEEEEecCCccEEEEEE
Q 027585          156 GLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       156 g~~H~~~N~g~~~a~~l~~  174 (221)
                      +..|...|.  +++.++.+
T Consensus       316 ~~~h~~~n~--~~~~Lf~~  332 (351)
T d2phda1         316 WVPWSLQAE--TQFDLFRF  332 (351)
T ss_dssp             TCCEEEEES--SCEEEEEE
T ss_pred             CCcEEEecC--CCeEEEEE
Confidence            999999995  45666555

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.71  E-value=3.8e-08  Score=85.98  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec-CCccEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV-GEGKALAFTA  174 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~-g~~~a~~l~~  174 (221)
                      .+......+.||...++|+|.. .++.||++|+..+..++.  +  ...+++||++++|+|..|...|. +++++.++.+
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH~~-~~~~~vi~G~g~~t~v~g--e--~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~  158 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIVDG--H--KVELGANDFVLTPNGTWHEHGILESGTECIWQDG  158 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEETT--E--EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEE
T ss_pred             hhhhheEeeCCCCcCccccccc-ceeEEEEECCcEEEEECC--E--EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEe
Confidence            4788888999999999999975 999999999987754432  2  78999999999999999999996 5678887776


Q ss_pred             Ec
Q 027585          175 FN  176 (221)
Q Consensus       175 ~~  176 (221)
                      .+
T Consensus       159 ~D  160 (355)
T d3bu7a1         159 LD  160 (355)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=5e-08  Score=77.28  Aligned_cols=85  Identities=16%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             EEEEEEEcCCCc----------CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCc
Q 027585           98 SMNRVDFAPGGL----------NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus        98 s~~~v~l~Pgg~----------~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      +.-.+++.|+.+          ...|.|+. .|+.||++|++.+.+.+.+++.+...+++||++++|+|..||+.-..+.
T Consensus        63 ~~D~i~l~p~~~pn~~~~~~~F~~EH~H~~-~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~  141 (179)
T d1vr3a1          63 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  141 (179)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceEEEEECCccCCCHHHHHHHHhhceeCCC-cEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCC
Confidence            456677777653          26899997 9999999999999999888888889999999999999999999887777


Q ss_pred             cEEEEEEEcCCCCeeee
Q 027585          168 KALAFTAFNSHLPGAVI  184 (221)
Q Consensus       168 ~a~~l~~~~s~~pg~~~  184 (221)
                      ..+++=.|.. .||..-
T Consensus       142 ~v~aiRlF~~-~~~W~~  157 (179)
T d1vr3a1         142 YVKAMRLFVG-EPVWTP  157 (179)
T ss_dssp             CEEEEEEESS-SCCCCC
T ss_pred             CEEEEEEECC-CCeeeE
Confidence            7777777764 566653

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.66  E-value=7.6e-09  Score=82.17  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEcCCCCee
Q 027585          110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFNSHLPGA  182 (221)
Q Consensus       110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~  182 (221)
                      ...|.|+. +|+.||++|++.+.+.+. ++.+...+++||++++|+|+.||+....+...+++-.|..+ +|.
T Consensus        93 ~~EH~H~~-dEvr~vv~G~g~f~v~~~-d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~-~gW  162 (179)
T d1zrra1          93 LNEHTHGE-DEVRFFVEGAGLFCLHIG-DEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP-EGW  162 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEECS-SCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG-GGE
T ss_pred             cccccCCC-ceEEEEEeCeEEEEEEcC-CeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCC-CCC
Confidence            36899997 999999999999998874 67778899999999999999999987777777877777643 553

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.25  E-value=3.3e-07  Score=69.98  Aligned_cols=76  Identities=16%  Similarity=-0.011  Sum_probs=59.2

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      |....+++++||+..++|+|+. .|.+||++|++++.-.+..   ....+.+|+.++.|+|..|...- +++.++++..+
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~~-~e~~~VL~G~l~~~~g~~~---~g~~~~~g~y~~~Pag~~H~~~~-~~e~~~~~~~~  116 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVRGGKAA---GGDTAIAPGYGYESANARHDKTE-FPVASEFYMSF  116 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEETTCGGG---TSEEEESSEEEEECTTCEESCCE-EEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcCcCCCcccc-CEEEEEEEEEEEecCCCcC---CCceEeCCceeEcCCCCeEcccc-CCCCEEEEEEE
Confidence            6678899999999999999997 8889999999987533221   13577899999999999996422 45667777665


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      .
T Consensus       117 ~  117 (144)
T d2o1qa1         117 L  117 (144)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=3.3e-06  Score=64.27  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             CCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE-ecCCccEEEEEEE
Q 027585          110 NPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ-NVGEGKALAFTAF  175 (221)
Q Consensus       110 ~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~-N~g~~~a~~l~~~  175 (221)
                      ..||-|+. -+++||++|++.+.++++     ++.+++||.+++|+|.+|.+. ..++++..++++.
T Consensus        31 ~Rp~g~~~-Y~l~yv~~G~G~~~i~~~-----~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~   91 (161)
T d2arca_          31 DRPLGMKG-YILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (161)
T ss_dssp             EETTCCSS-EEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             ECCCCCCC-EEEEEEEEeEEEEEECCE-----EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEE
Confidence            46788887 999999999999999887     999999999999999999754 4556777777653

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=98.12  E-value=6.1e-06  Score=61.98  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=57.8

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ...+|....+|.|....++++|++|.+.+.+.+...+......++++.+++|+|..|.+.+.++. +.++.
T Consensus        38 ~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~  107 (135)
T d2pa7a1          38 DTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMV  107 (135)
T ss_dssp             SCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEE
T ss_pred             cCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCC-cEEEE
Confidence            35678889999999899999999999999998876655455558889999999999999998765 44444

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=97.77  E-value=0.00022  Score=55.95  Aligned_cols=85  Identities=15%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEec----CC---eEEEEEecCCcEEEECCC-CeEEEEecC-C
Q 027585           96 GISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTT----NN---VFYSKVLSAGEMFVIPRG-LIHFQQNVG-E  166 (221)
Q Consensus        96 gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~----~~---~~~~~~L~~GDv~~~P~g-~~H~~~N~g-~  166 (221)
                      .+++..+.-.||...|+|=|+++.-++.|++|+++...-..    ..   ...+..+++|++.++... -.|.+.|.+ +
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            36788889999999999999988999999999998876532    11   234688999999988765 599999998 4


Q ss_pred             ccEEEEEEEcCCCC
Q 027585          167 GKALAFTAFNSHLP  180 (221)
Q Consensus       167 ~~a~~l~~~~s~~p  180 (221)
                      ++++.+-+++.+..
T Consensus       145 ~~avsLHvYspP~~  158 (186)
T d3elna1         145 EPAVSLHLYSPPFD  158 (186)
T ss_dssp             CCEEEEEEEESCCS
T ss_pred             CCeEEEEEeCCChh
Confidence            78888888876643

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.64  E-value=0.00025  Score=54.96  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      +..+.-.|+...--|..+. +|++|=++|.+.+.+.+ +|+.....+++||++.+|++++|.-.-.
T Consensus        37 iVMvVGGPN~R~DyH~~~~-eE~FyQlkG~m~Lkv~e-~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          37 IVTVVGGPNHRTDYHDDPL-EEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             EEEEECSCBCCCCEEECSS-CEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             EEEEecCCcccCccccCcc-hhheeeeccceEEEEEe-CCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            4445556777788899987 99999999999999987 5888899999999999999999999764

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.00023  Score=55.15  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC---CeEEEEEecCCcEEEECCCCeEEEEecCCccEEEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN---NVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~---~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      +..+.-.|+...--|.-+. +|++|=++|.+.+.+.+.+   |+.....+++||++..|++++|+-+-..++-..++
T Consensus        35 iVmvVGGPN~R~DyH~~~~-eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGLVI  110 (175)
T d1zvfa1          35 TVMIVGGPNERTDYHINPT-PEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVV  110 (175)
T ss_dssp             EEEEECSSBCCSCEEECSS-CEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             EEEEEcCCCcccccccCcc-hhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEEEE
Confidence            3445557777888899887 9999999999999988753   57778999999999999999999877544333333

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=6.6e-05  Score=52.29  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=39.8

Q ss_pred             EEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585          103 DFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      +-.||.. ++++  ..+|++||++|++++...  +|.  ..++++||.++||+|..=.+..
T Consensus        24 ~~~pg~f-~~~y--~~~E~~~ileG~v~i~~~--~G~--~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          24 EKEVSEF-DWYY--DTNETCYILEGKVEVTTE--DGK--KYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             EECSEEE-EEEC--SSCEEEEEEEEEEEEEET--TCC--EEEEETTCEEEECTTCEEEEEE
T ss_pred             eecCcEE-EEEc--CccEEEEEEEeEEEEEcC--CCC--EEEEeCCCEEEECCCCEEEEEE
Confidence            3455432 3343  358999999999999753  454  6789999999999999866654

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.56  E-value=0.00047  Score=54.35  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecC--Ce----EEEEEecCCcEEEEC--CCCeEEEEec-CCc
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTN--NV----FYSKVLSAGEMFVIP--RGLIHFQQNV-GEG  167 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~--~~----~~~~~L~~GDv~~~P--~g~~H~~~N~-g~~  167 (221)
                      +++..+...||...++|-|.. ..++.|++|+++..+-...  +.    .....+++||+..+.  .|.+|.+.|. +++
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~-w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~~  146 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  146 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             EEEEEEecCCCCCCCCCCCCC-ceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCCc
Confidence            678888999999999999975 7999999999888766432  21    235689999998874  4679999997 566


Q ss_pred             cEEEEEEEcC
Q 027585          168 KALAFTAFNS  177 (221)
Q Consensus       168 ~a~~l~~~~s  177 (221)
                      +++-|=+|..
T Consensus       147 ~avSLHvYg~  156 (192)
T d2gm6a1         147 VSISIHVYGA  156 (192)
T ss_dssp             CEEEEEEESS
T ss_pred             cEEEEEECCC
Confidence            7777777754

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=0.0022  Score=52.52  Aligned_cols=65  Identities=25%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             EEEEcC-CCcCCCCCCCCCcEEEEEEeCEEEEEEEecCC----------------------------------eEEEEEe
Q 027585          101 RVDFAP-GGLNPPHSHPRASESGIVIKGKLLVGFFTTNN----------------------------------VFYSKVL  145 (221)
Q Consensus       101 ~v~l~P-gg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~----------------------------------~~~~~~L  145 (221)
                      .+-+.+ |+..++|+.+. +-++..++|+=++.+..+..                                  +..+.+|
T Consensus       125 ~~~~~~~g~~~~~H~D~~-d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  203 (319)
T d1vrba1         125 IVYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNL  203 (319)
T ss_dssp             EEEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEE
T ss_pred             EEEecCCCCCCccccCCC-ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEE
Confidence            344444 55689998875 77888899998888865310                                  1246789


Q ss_pred             cCCcEEEECCCCeEEEEecCC
Q 027585          146 SAGEMFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       146 ~~GDv~~~P~g~~H~~~N~g~  166 (221)
                      +|||++++|+|..|+.+|.++
T Consensus       204 ~pGDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         204 TPGTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             CTTCEEEECTTCEEEEECSSC
T ss_pred             CCCCEEEeCCCceEEeEecCC
Confidence            999999999999999998754

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.69  E-value=0.0071  Score=46.69  Aligned_cols=78  Identities=21%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             EcCCCcCCCCCCC---CCcEEEEEEeCEEEEEEEecC------CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEE
Q 027585          104 FAPGGLNPPHSHP---RASESGIVIKGKLLVGFFTTN------NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus       104 l~Pgg~~~~H~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      -.+|....+|.|.   ....+++|++|++...+.|-.      |+.....|.+  +..+++|+|..|.+....+....++
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y  131 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYF  131 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEE
Confidence            3688889999872   235699999999999888642      5667777764  5599999999999999877544444


Q ss_pred             EEEcCCCCe
Q 027585          173 TAFNSHLPG  181 (221)
Q Consensus       173 ~~~~s~~pg  181 (221)
                      .+-..-+|+
T Consensus       132 ~~~~~y~p~  140 (176)
T d1wlta1         132 ITHNEYSPP  140 (176)
T ss_dssp             EESSCCCGG
T ss_pred             ecCCccChh
Confidence            332333455

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.0061  Score=48.05  Aligned_cols=70  Identities=13%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             EcCCCcCCCCCCC---CCcEEEEEEeCEEEEEEEecC------CeEEEEEecCCc--EEEECCCCeEEEEecCCccEEEE
Q 027585          104 FAPGGLNPPHSHP---RASESGIVIKGKLLVGFFTTN------NVFYSKVLSAGE--MFVIPRGLIHFQQNVGEGKALAF  172 (221)
Q Consensus       104 l~Pgg~~~~H~Hp---~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~GD--v~~~P~g~~H~~~N~g~~~a~~l  172 (221)
                      -.+|....+|+|.   ....+++|++|++...+.|-.      |+.+...|.+.+  .++||+|..|.+...++.....+
T Consensus        53 S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y  132 (198)
T d2ixca1          53 SSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMY  132 (198)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEE
T ss_pred             eehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeec
Confidence            3688888999863   358999999999999987642      577788887754  99999999999999866544444


Q ss_pred             E
Q 027585          173 T  173 (221)
Q Consensus       173 ~  173 (221)
                      .
T Consensus       133 ~  133 (198)
T d2ixca1         133 L  133 (198)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.47  E-value=0.0058  Score=47.56  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             EEcCCCcCCCCCCCC---CcEEEEEEeCEEEEEEEec------CCeEEEEEecCC--cEEEECCCCeEEEEecCCccEEE
Q 027585          103 DFAPGGLNPPHSHPR---ASESGIVIKGKLLVGFFTT------NNVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~---a~Ei~yVl~G~~~v~~~~~------~~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      .-.+|....+|+|..   ...+++|++|++...+.+-      -|+.....|.+.  ..++||+|..|.+...+++....
T Consensus        53 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~  132 (183)
T d1dzra_          53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFL  132 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             eeccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEE
Confidence            336888899998742   3689999999999988873      157778888775  59999999999999987655444


Q ss_pred             EEEEcCCCCe
Q 027585          172 FTAFNSHLPG  181 (221)
Q Consensus       172 l~~~~s~~pg  181 (221)
                      +.+-..-+|+
T Consensus       133 Y~~~~~y~p~  142 (183)
T d1dzra_         133 YKATNYYSPS  142 (183)
T ss_dssp             EEESSCCCTT
T ss_pred             EeCCcccCcc
Confidence            4432223344

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0075  Score=52.74  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             CCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEEc
Q 027585          114 SHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAFN  176 (221)
Q Consensus       114 ~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~~  176 (221)
                      ..-+++|++||-+|++++...-.     ...+++||.++||+|+.+++.-.+.....++.++.
T Consensus       147 ~NADGDeLi~~~~Gsg~l~TefG-----~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~~g  204 (439)
T d1eyba_         147 YNSDGDFLIVPQKGNLLIYTEFG-----KMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYG  204 (439)
T ss_dssp             EESSEEEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEECSSSEEEEEEEEES
T ss_pred             EcCCCCEEEEEEeCcEEEEEeee-----EEEecCCcEEEecCceEEEEecCCCceEEEEeecC
Confidence            44567999999999999987655     78999999999999999988765433333444443

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.28  E-value=0.0086  Score=46.58  Aligned_cols=78  Identities=18%  Similarity=0.140  Sum_probs=57.9

Q ss_pred             cCCCcCCCCCC--CCCcEEEEEEeCEEEEEEEecC------CeEEEEEecC--CcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSH--PRASESGIVIKGKLLVGFFTTN------NVFYSKVLSA--GEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~H--p~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~--GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+|....+|+|  +....+++|++|++...+.|-.      |+.....|.+  +..+++|+|..|.+...++.....+.+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~  136 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEecc
Confidence            57778888875  3347999999999998887631      6778888887  458999999999999987666555544


Q ss_pred             EcCCCCee
Q 027585          175 FNSHLPGA  182 (221)
Q Consensus       175 ~~s~~pg~  182 (221)
                      -..-+|+.
T Consensus       137 s~~y~~~~  144 (184)
T d2ixha1         137 TDFWAPEH  144 (184)
T ss_dssp             SSCCCGGG
T ss_pred             ccccCccc
Confidence            33334543

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.20  E-value=0.01  Score=46.10  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             cCCCcCCCCCCC--CCcEEEEEEeCEEEEEEEecC------CeEEEEEecCC--cEEEECCCCeEEEEecCCccEEEEEE
Q 027585          105 APGGLNPPHSHP--RASESGIVIKGKLLVGFFTTN------NVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       105 ~Pgg~~~~H~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      .+|....+|.|.  ....+++|++|++...+.+-.      |+.....|.+.  ..+++|+|..|.+...+++....+.+
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            578788899762  237899999999999888742      57777888775  58999999999999986654444433


Q ss_pred             EcCCCCee
Q 027585          175 FNSHLPGA  182 (221)
Q Consensus       175 ~~s~~pg~  182 (221)
                      -..-+|+.
T Consensus       134 s~~y~p~~  141 (183)
T d1ep0a_         134 TELYHPEY  141 (183)
T ss_dssp             SSCCCGGG
T ss_pred             cCCcCccc
Confidence            33334553

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.18  E-value=0.022  Score=44.77  Aligned_cols=79  Identities=11%  Similarity=0.084  Sum_probs=57.4

Q ss_pred             EEcCCCcCCCCCCC---CCcEEEEEEeCEEEEEEEec------CCeEEEEEecCC--cEEEECCCCeEEEEecCCccEEE
Q 027585          103 DFAPGGLNPPHSHP---RASESGIVIKGKLLVGFFTT------NNVFYSKVLSAG--EMFVIPRGLIHFQQNVGEGKALA  171 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp---~a~Ei~yVl~G~~~v~~~~~------~~~~~~~~L~~G--Dv~~~P~g~~H~~~N~g~~~a~~  171 (221)
                      .-.+|....+|+|.   ....+++|++|++...+.|-      -|+.....|.+.  ..++||+|..|.+....+.....
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~  132 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMS  132 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEE
T ss_pred             cchhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeE
Confidence            34678888999873   24699999999999999863      156667777755  58999999999999987665444


Q ss_pred             EEEEcCCCCe
Q 027585          172 FTAFNSHLPG  181 (221)
Q Consensus       172 l~~~~s~~pg  181 (221)
                      +.+-..-+|+
T Consensus       133 Y~~s~~y~p~  142 (202)
T d1oi6a_         133 YMLSRSYVTQ  142 (202)
T ss_dssp             EEESSCCCGG
T ss_pred             EecCCccChh
Confidence            4332223444

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.74  E-value=0.054  Score=41.99  Aligned_cols=77  Identities=12%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             cCCCcCCCCCC---CCCcEEEEEEeCEEEEEEEecC------CeEEEEEe--cCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSH---PRASESGIVIKGKLLVGFFTTN------NVFYSKVL--SAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~H---p~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L--~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|   ....++++|++|++...+.+-.      ++.+...|  +.+..++||+|..|.+...++.....+.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            57888899965   2347899999999999988642      44445555  6778999999999999998766555544


Q ss_pred             EEcCCCCe
Q 027585          174 AFNSHLPG  181 (221)
Q Consensus       174 ~~~s~~pg  181 (221)
                      +-..-+|+
T Consensus       134 ~s~~y~p~  141 (190)
T d2c0za1         134 SSGTYDPA  141 (190)
T ss_dssp             ESSCCCTT
T ss_pred             cCCccCcc
Confidence            43322443

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.019  Score=47.76  Aligned_cols=66  Identities=23%  Similarity=0.294  Sum_probs=49.8

Q ss_pred             EEEEcCCC-cCCCCCCCCCcEEEEEEeCEEEEEEEecC-----------------------------------CeEEEEE
Q 027585          101 RVDFAPGG-LNPPHSHPRASESGIVIKGKLLVGFFTTN-----------------------------------NVFYSKV  144 (221)
Q Consensus       101 ~v~l~Pgg-~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~-----------------------------------~~~~~~~  144 (221)
                      .+.+.+++ ..++|+-.. .-++.+++|+=++.+..+.                                   -+....+
T Consensus       172 ~lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~  250 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  250 (335)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEE
Confidence            35566544 567787554 7889999999888876331                                   0245678


Q ss_pred             ecCCcEEEECCCCeEEEEecCCc
Q 027585          145 LSAGEMFVIPRGLIHFQQNVGEG  167 (221)
Q Consensus       145 L~~GDv~~~P~g~~H~~~N~g~~  167 (221)
                      |++||++++|+|..|..+|.++.
T Consensus       251 l~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         251 VGPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTS
T ss_pred             ECCCCEEeeCCCCeEEEEEcCCC
Confidence            99999999999999999997553

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.49  E-value=0.014  Score=45.77  Aligned_cols=68  Identities=22%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             cCCCcCCCCCCCCCcEEEEEE-eCEEEEEEEec-----CCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          105 APGGLNPPHSHPRASESGIVI-KGKLLVGFFTT-----NNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       105 ~Pgg~~~~H~Hp~a~Ei~yVl-~G~~~v~~~~~-----~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+|....+|+|+. ...++++ .|.+...+.+-     -|+.+...|.++..++||+|..|.+...+++....+.
T Consensus        65 ~kgvlRGlH~q~~-~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~  138 (194)
T d1nxma_          65 RKNVLRGLHAEPW-DKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYL  138 (194)
T ss_dssp             ETTBEEEEEECSS-CEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             eeeEEEEEEeccc-hhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEe
Confidence            5788899999987 6777776 59888877753     2577889999999999999999999988766544443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.048  Score=43.14  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECC--CCeEEEEecC-CccEEEEEEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPR--GLIHFQQNVG-EGKALAFTAF  175 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~--g~~H~~~N~g-~~~a~~l~~~  175 (221)
                      +..-.+.||.-.++|-|.+-+-+-||++|+++-.  |+-|.  ..++++||+-++-+  |+.|.-.|.. +++++++-+.
T Consensus        43 ~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~--DS~G~--~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiW  118 (231)
T d1tq5a1          43 INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIW  118 (231)
T ss_dssp             EEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEE
T ss_pred             EecceecCCCCCCCCCcCCeeEEEEEEeEEEEEC--CCCCC--cEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEEE
Confidence            4566789999999999999777789999987743  33344  67899999877765  5789888864 4467776654


Q ss_pred             c
Q 027585          176 N  176 (221)
Q Consensus       176 ~  176 (221)
                      -
T Consensus       119 i  119 (231)
T d1tq5a1         119 I  119 (231)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=94.74  E-value=0.058  Score=46.96  Aligned_cols=76  Identities=13%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             eEEEEEEEcCCCcCC--CCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCC---ccEEE
Q 027585           97 ISMNRVDFAPGGLNP--PHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGE---GKALA  171 (221)
Q Consensus        97 is~~~v~l~Pgg~~~--~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~---~~a~~  171 (221)
                      +.+.++++.++....  .+... ..++++|++|++++...+.++.  +..|++||++++|++..-.+...+.   +.+++
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~-~~~Illv~~G~~~i~~~~~~~~--~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~  433 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLN-GPSIVIATNGKGTIQITGDDST--KQKIDTGYVFFVAPGSSIELTADSANQDQDFTT  433 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCS-SCEEEEEEESEEEEEETTCGGG--CEEEETTCEEEECTTCCEEEEECSSCCSSCCEE
T ss_pred             eEEEEEEECCCCCceeeecCCC-CcEEEEEEcCEEEEEecCCCcc--EEEeCCceEEEEcCCceEEEEeecCCCCCceEE
Confidence            567888887765332  22223 4799999999999987543222  6899999999999998766666553   35555


Q ss_pred             EEEE
Q 027585          172 FTAF  175 (221)
Q Consensus       172 l~~~  175 (221)
                      +-+|
T Consensus       434 ~rA~  437 (440)
T d1pmia_         434 YRAF  437 (440)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.70  E-value=0.29  Score=35.93  Aligned_cols=91  Identities=13%  Similarity=0.020  Sum_probs=61.7

Q ss_pred             ccCCeeEEEeeccccCCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCCeEEEEEe----cCCc
Q 027585           75 TIFGSAVTPANVLAFPGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNNVFYSKVL----SAGE  149 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~L----~~GD  149 (221)
                      -|.||..+....+...+-. .-++....-+.++....+|.-.+++|+.+-..|. +++.+..++++....+|    .+|+
T Consensus        16 HPEGG~f~et~rs~~~~~R-~~~T~IYyLL~~~~~s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~ge   94 (140)
T d1znpa1          16 HPEGGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGE   94 (140)
T ss_dssp             CTTSSEEEEEEECSSSTTT-CSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTE
T ss_pred             CCCCceEEEEEECCCCCCC-cceEEEEEEcCCCCCCccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccCC
Confidence            3567777666554433222 2245555667787765555434468999999987 88888877776556554    4677


Q ss_pred             --EEEECCCCeEEEEecCC
Q 027585          150 --MFVIPRGLIHFQQNVGE  166 (221)
Q Consensus       150 --v~~~P~g~~H~~~N~g~  166 (221)
                        .++||+|.....+..|+
T Consensus        95 ~~q~vVp~g~W~aa~~~g~  113 (140)
T d1znpa1          95 RPQVIVPANCWQSAESLGD  113 (140)
T ss_dssp             ESEEEECTTCEEEEEESSS
T ss_pred             ceeEEECCCeEEeeeECCC
Confidence              78999999999887654

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=94.37  E-value=0.54  Score=35.06  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             ccCCeeEEEeeccccC-CCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCE-EEEEEEecCCeEEEEEe----cCC
Q 027585           75 TIFGSAVTPANVLAFP-GVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGK-LLVGFFTTNNVFYSKVL----SAG  148 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP-~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~-~~v~~~~~~~~~~~~~L----~~G  148 (221)
                      .|.||..+....+.-. .-...-.+....-+.++....+|.=. ++|+.+-..|. +++.+.+++|+..+..|    ..|
T Consensus        16 HPEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S~~Hrv~-sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          16 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLT-ADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEECS-SCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCCceEEec-CCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            3567777655543221 11222345666667788776666654 69999999887 78888888887666664    467


Q ss_pred             cE--EEECCCCeEEEEecCCccEEEEEEEcCCCCeeeeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027585          149 EM--FVIPRGLIHFQQNVGEGKALAFTAFNSHLPGAVIVPTTLFASTPSVPNQVLTKTFQVDDDLISTI  215 (221)
Q Consensus       149 Dv--~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~l~~~~v~~l  215 (221)
                      +.  +++|+|......-. .+.-.+++..-  .||+..-.   |.-   .+.+-|.+.|---.+.|++|
T Consensus        95 e~~q~vVp~g~w~~a~~~-~g~~sLvsctV--aPGFdf~D---fel---~~~~~L~~~~P~~~~~I~~l  154 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSAMN-QDGFSLVGCMV--SPGFTFDD---FEL---FSQEALLAMYPQHKAVVQKL  154 (158)
T ss_dssp             EESCEEECTTCEEEEEES-SSSEEEEEEEE--SSCCCGGG---CCB---CBHHHHHHSCCTTHHHHTTS
T ss_pred             ceeEEEEcCCCEEEEEEc-CCCcEEEEEEE--cCCccchh---ccc---cCHHHHHHHCchhHHHHHHH
Confidence            75  89999986655433 33333443332  35543222   221   35566666776666666654

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.22  E-value=0.053  Score=44.99  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEE
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQ  162 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~  162 (221)
                      +++.++++......   ...+...+++|++|++++...+.     +..|++||++++|++...+..
T Consensus       247 F~~~~~~~~~~~~~---~~~~~~~il~vi~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         247 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKYEDK-----TCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCCEEE
T ss_pred             EEEEEEEecCcEEe---ccCCCcEEEEEEeCeEEEEECCE-----EEEEecCcEEEEECCCCCEEE
Confidence            56777777532221   12344799999999999986554     788999999999999866544

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.21  Score=40.76  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEE---eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           96 GISMNRVDFAPGGL---NPPHSHPRASESGIVI---KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg~---~~~H~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+-+..-.+.||+.   .|||.|++..|..|--   ++...+++.++........++-+|.++-|+-.+|...  |...-
T Consensus       176 qLlmG~tvl~PGg~WSSyPpHkHDRrmEeyyYF~l~~~~~Vfh~mGep~etrhivv~neqaVisP~wsih~g~--gt~~y  253 (277)
T d1xrua1         176 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQPQETRHIVMHNEQAVISPSWSIHSGV--GTKAY  253 (277)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEEEEEEETTEEEEEEECSSEEEEECTTCEEEEE--ESSCC
T ss_pred             eEEEEEEEEcCCCccCCCCCccCCCCcceEEEEEcCCCceEEEecCCCCceeEEEEECCcEEECCCCcccCCC--CCcce
Confidence            35566677889983   6999999877776655   3556667776656656789999999999999999854  56666


Q ss_pred             EEEEEEcCCC
Q 027585          170 LAFTAFNSHL  179 (221)
Q Consensus       170 ~~l~~~~s~~  179 (221)
                      .+++....+|
T Consensus       254 ~fiW~maGen  263 (277)
T d1xrua1         254 TFIWGMVGEN  263 (277)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEcccc
Confidence            7777776554

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.16  Score=41.18  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=63.7

Q ss_pred             ccCCeeEEEeeccccCCCcccc--eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEE
Q 027585           75 TIFGSAVTPANVLAFPGVNTLG--ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFV  152 (221)
Q Consensus        75 ~~~g~~v~~~~~~~fP~l~~~g--is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~  152 (221)
                      ...|..++.+...  +.+...|  +-+....+.++.-.++|-|.+-+-+-||++|...-+- |.-|.  ..++++||+-+
T Consensus        16 ~g~G~~v~R~~~~--~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~-Ds~G~--~~~i~~G~vq~   90 (288)
T d1j1la_          16 EGVGARVRRSIGR--PELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE-DFCGH--TGKMNPGDLQW   90 (288)
T ss_dssp             ETBTEEEEECTTS--TTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE-ETTSC--EEEECTTCEEE
T ss_pred             ccCCEEEEEeCCC--CCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEe-cCCCC--eeEecCCCEEE
Confidence            3446666655432  2233223  3455567788777899999984445677898543233 33344  68999999877


Q ss_pred             ECC--CCeEEEEecCCccEEEEEEE
Q 027585          153 IPR--GLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       153 ~P~--g~~H~~~N~g~~~a~~l~~~  175 (221)
                      +-+  |+.|.-.|..+++++.+-+.
T Consensus        91 mtAG~Gi~HsE~~~~~~~~~~lQiW  115 (288)
T d1j1la_          91 MTAGRGILHAEMPCSEEPAHGLQLW  115 (288)
T ss_dssp             EECTTCEEEEEEECSSSCEEEEEEE
T ss_pred             EecccceEecccccccccceeeEEE
Confidence            765  57999999988888877665

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.51  Score=33.11  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCCcCCCC----CCCCCcEEEEEEeCEEEEE-EEecCC--eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEEE
Q 027585          106 PGGLNPPH----SHPRASESGIVIKGKLLVG-FFTTNN--VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTAF  175 (221)
Q Consensus       106 Pgg~~~~H----~Hp~a~Ei~yVl~G~~~v~-~~~~~~--~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~~  175 (221)
                      |.+....|    +-.+...-+.|++|++++. +.++..  ......+++|+.-++|+...|.+...++.---.+.++
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy   99 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFF   99 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEE
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEE
Confidence            44455667    5567778899999999975 544322  1236789999999999999999998765433233433

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=92.62  E-value=0.26  Score=33.89  Aligned_cols=56  Identities=16%  Similarity=0.062  Sum_probs=41.0

Q ss_pred             CCCcEEEEEEeCEEEEE-EEecCC--eEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585          116 PRASESGIVIKGKLLVG-FFTTNN--VFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus       116 p~a~Ei~yVl~G~~~v~-~~~~~~--~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      .+...-+-|++|++++. +.++.+  ......+.+|+.-++|+...|.+.-  ..++++..
T Consensus        32 ~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~--sdD~~f~v   90 (96)
T d3dl3a1          32 VDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIEL--SDDAQFNI   90 (96)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEE--CTTCEEEE
T ss_pred             CceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEe--CCCeEEEE
Confidence            45567799999999984 544433  2347889999999999999999984  34444433

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.22  Score=40.36  Aligned_cols=82  Identities=10%  Similarity=-0.001  Sum_probs=60.1

Q ss_pred             CCCcccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           90 PGVNTLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        90 P~l~~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      |......+.+..+.+++|.....-...+..-++||++|++.+.-...     ...+++++.+++..|..=.+.+.+++++
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~~-----~~~l~~~~~~~l~~gd~~~i~~~~~~~a  234 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDA-----QQKIEPHHTAVLGEGDSVQVENKDPKRS  234 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTS-----CEEECTTEEEEECSCSEEEEECCSSSCE
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCccc-----ceeecCceEEEEcCCCeEEEEeCCCCCC
Confidence            44445578899999999997543333344678999999999853322     5678889988888887766778788888


Q ss_pred             EEEEEEc
Q 027585          170 LAFTAFN  176 (221)
Q Consensus       170 ~~l~~~~  176 (221)
                      +++.+-.
T Consensus       235 ~~LLl~G  241 (288)
T d1j1la_         235 HFVLIAG  241 (288)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            8776543

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.71  E-value=0.43  Score=32.55  Aligned_cols=54  Identities=22%  Similarity=0.162  Sum_probs=42.5

Q ss_pred             CCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEEE
Q 027585          116 PRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFTA  174 (221)
Q Consensus       116 p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~~  174 (221)
                      ..+.|+.-|++|++++.+.+++   ....+++|+.|-+|++..-.++-  .+....+|.
T Consensus        38 T~~~E~MeivsG~l~V~lpg~~---ew~~~~~G~sF~Vpans~F~ikv--~~~~~Y~C~   91 (93)
T d2oyza1          38 TQAPERMTVVKGALVVKRVGEA---DWTTYSSGESFDVEGNSSFELQV--KDATAYLCE   91 (93)
T ss_dssp             ESSCEEEEEEESEEEEEETTCS---SCEEEETTCEEEECSSEEEEEEE--SSCEEEEEE
T ss_pred             CCCCEEEEEEeeEEEEECCCCc---ccEEeCCCCeEEECCCCEEEEEE--CcceeeEEE
Confidence            4568999999999999997652   26899999999999998877765  344555553

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.62  E-value=0.43  Score=38.46  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEE---eCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccE
Q 027585           96 GISMNRVDFAPGGL---NPPHSHPRASESGIVI---KGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKA  169 (221)
Q Consensus        96 gis~~~v~l~Pgg~---~~~H~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a  169 (221)
                      .+-+..-.+.||+.   .|||.|++..|..|--   ++...+++.++........++-+|.++-|+-..|...  |...-
T Consensus       174 qLlmG~tvl~pGg~WsS~PpH~HDRrmE~YyYFdl~e~~~V~H~mGep~eTrhivv~n~qaVisP~wsiHsg~--gt~~Y  251 (260)
T d1ywka1         174 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHSGV--GTSNY  251 (260)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCCEE--ESSCC
T ss_pred             ceEEEEEEEcCCCccCCcCCcccCCCCceEEEEEcCCCceEEEeeCCCCceEEEEEECCcEEEcCCccccCCC--CccCc
Confidence            35566667899973   5999999878876655   3556667776655555788999999999999999754  44444


Q ss_pred             EEEEEE
Q 027585          170 LAFTAF  175 (221)
Q Consensus       170 ~~l~~~  175 (221)
                      .+++..
T Consensus       252 ~FiW~M  257 (260)
T d1ywka1         252 SFIWAM  257 (260)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            455543

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=90.37  E-value=0.092  Score=43.32  Aligned_cols=67  Identities=18%  Similarity=0.158  Sum_probs=45.7

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEE----------EEEEe--CEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEec
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASES----------GIVIK--GKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNV  164 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei----------~yVl~--G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~  164 (221)
                      ..+.++.+.||+.+.+|.=.  .+.          -+.+.  -...+.++++     .+.+++|+++++.-+.+|+..|.
T Consensus        91 ~r~~rirL~pGg~I~pH~D~--~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~-----~~~m~~Ge~w~~D~~~~H~v~N~  163 (290)
T d1e5ra_          91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDT-----VIHMRPGEIWFLDAATVHSAVNF  163 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTE-----EECCCTTEEEECCTTSCEEEEES
T ss_pred             eeeeeeeecCCcEecCCcCC--ccccccCCceEEEEEEeecCCceEEEECCE-----EEECCCCeEEEEcCCCeEEEECC
Confidence            56778888899999998522  121          11111  1233333333     78999999999999999999999


Q ss_pred             CCccEE
Q 027585          165 GEGKAL  170 (221)
Q Consensus       165 g~~~a~  170 (221)
                      |+++-.
T Consensus       164 sd~dRI  169 (290)
T d1e5ra_         164 SEISRQ  169 (290)
T ss_dssp             SSSCCC
T ss_pred             CCCceE
Confidence            987633

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.26  E-value=0.43  Score=39.01  Aligned_cols=58  Identities=12%  Similarity=0.093  Sum_probs=40.9

Q ss_pred             eEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe
Q 027585           97 ISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN  163 (221)
Q Consensus        97 is~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N  163 (221)
                      +++.++++........  . +..++++|++|++++. .++     +..|++||.+++|++.-.+...
T Consensus       229 F~~~~~~~~~~~~~~~--~-~~~~il~~~~G~~~i~-~~~-----~~~l~~G~s~~iPA~~~~~~i~  286 (299)
T d1zx5a1         229 FGLEVVDVTGTAEIKT--G-GVMNILYAAEGYFILR-GKE-----TADLHRGYSCLVPASTDSFTVE  286 (299)
T ss_dssp             EEEEEEEEEEEEEEEC--C-SBCEEEEEEESCEEEE-SSS-----EEEECTTCEEEECTTCCEEEEE
T ss_pred             eEEEEEEecCcEEecc--C-CceEEEEEeccEEEEe-CCC-----EEEEcCCcEEEEecCCccEEEE
Confidence            5667776654332222  2 3478999999998874 222     6789999999999998876553

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.59  Score=36.41  Aligned_cols=69  Identities=9%  Similarity=-0.012  Sum_probs=46.0

Q ss_pred             ccceEEEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEecCCccEEEEE
Q 027585           94 TLGISMNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQNVGEGKALAFT  173 (221)
Q Consensus        94 ~~gis~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N~g~~~a~~l~  173 (221)
                      ...+.+..+.+.+|+....-..++..=++||++|++++  +   |    ..|.+||.+.+..+..-.+..  +++++++.
T Consensus       157 ~~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i--~---g----~~l~~gd~~~l~~~~~l~i~A--~~~a~~LL  225 (231)
T d1tq5a1         157 HQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTI--N---G----VKASTSDGLAIWDEQAISIHA--DSDSEVLL  225 (231)
T ss_dssp             SSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEE--T---T----EEEETTCEEEEESCSCEEEEE--SSSEEEEE
T ss_pred             ccccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEE--C---C----EEccCCCeEEECCCCeEEEEE--CCCCEEEE
Confidence            34577889999998865333333335689999999986  2   2    368999988876665544544  34455554

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.87  E-value=0.53  Score=37.92  Aligned_cols=67  Identities=10%  Similarity=0.032  Sum_probs=44.1

Q ss_pred             EEcCCCcCCCCCCCCCcEE-EEEEeCEEEEEEEecCCeEEEEEecCCcEEEECCCCeEEEEe--cCCccEEEEEE
Q 027585          103 DFAPGGLNPPHSHPRASES-GIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVIPRGLIHFQQN--VGEGKALAFTA  174 (221)
Q Consensus       103 ~l~Pgg~~~~H~Hp~a~Ei-~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~P~g~~H~~~N--~g~~~a~~l~~  174 (221)
                      .++.+......+--+..|+ ++.+.|.+++.++++     ++.|.+.|++++|+|..+-...  ....++++...
T Consensus        58 ~l~~~~~~~~~~flerRElgiVnigG~g~V~VDG~-----~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~  127 (260)
T d1ywka1          58 EIILDKELGVDYFLERRELGVINIGGPGFIEIDGA-----KETMKKQDGYYIGKETKHVRFSSENPDNPAKFYIS  127 (260)
T ss_dssp             ECCCSGGGTSSSTTTTEEEEEEECSSCEEEEETTE-----EEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEE
T ss_pred             eccCchhccchhhhhhcEEEEEEeCCcEEEEECCE-----EEecCCCcEEEECCCCceEEEeccCCCCCcEEEEE
Confidence            3444443333343333666 556789999999888     8999999999999987654433  23456666443

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.67  E-value=0.47  Score=38.89  Aligned_cols=45  Identities=16%  Similarity=0.414  Sum_probs=34.9

Q ss_pred             CCcEEEEEEe----CEEEEEEEecC----------C----eEEEEEecCCcEEEECCCCeEEE
Q 027585          117 RASESGIVIK----GKLLVGFFTTN----------N----VFYSKVLSAGEMFVIPRGLIHFQ  161 (221)
Q Consensus       117 ~a~Ei~yVl~----G~~~v~~~~~~----------~----~~~~~~L~~GDv~~~P~g~~H~~  161 (221)
                      +-.|..|+++    .++.+++...+          +    -+....+++||++++|+|.+|.+
T Consensus       112 gK~E~wyil~a~~~a~~~~G~~~~~~~e~~~~i~~~~~~~lln~~~l~~Gd~~~ipaG~~HA~  174 (315)
T d1qwra_         112 GKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHAL  174 (315)
T ss_dssp             CCCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEE
T ss_pred             CCCceEEEEEcCCCcEEEEcCCCCCHHHHHHHHHcCCHHHhCcEEEcccCCEEEeCCCCeeEe
Confidence            3589999996    56777776543          1    13478999999999999999997

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.78  Score=31.50  Aligned_cols=49  Identities=12%  Similarity=0.142  Sum_probs=34.7

Q ss_pred             EEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE
Q 027585          102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF  151 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~  151 (221)
                      ..+++|...--. -.....+.+|++|.+++...+.+|+ .....+.+||.+
T Consensus        16 ~~~~~g~~i~~~-g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          16 HKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             EEECTTCEEECT-TSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             EEECcCCEEEcC-CCCCCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            356666544322 2234899999999999998887775 345678999976

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.76  E-value=0.81  Score=31.80  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeE-EEEEecCCcEE
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVF-YSKVLSAGEMF  151 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~  151 (221)
                      ..++++|...-..--+ ...+.++++|.+++...+.+|+. ....+.+||.+
T Consensus        14 ~~~~~~g~~i~~~g~~-~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          14 RRRYTAKSTIIYAGDR-CETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             EEEECTTCEEECTTSB-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEECCCCEEEeCCCc-CCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            3456666654322223 38999999999999988877763 34578999987

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.64  E-value=1.2  Score=31.05  Aligned_cols=51  Identities=22%  Similarity=0.238  Sum_probs=35.0

Q ss_pred             EEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEEEE
Q 027585          102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMFVI  153 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~~~  153 (221)
                      ..+++|...-.- -.....+.+|++|.+++...+++++.....+.+||.+-.
T Consensus        25 ~~~~kG~~i~~~-g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~   75 (132)
T d1ft9a2          25 KIHAKGSLVCTG-EGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCM   75 (132)
T ss_dssp             EEECTTCEEECT-TCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEES
T ss_pred             EEecCCcEEECC-CCCCCEEEEEEeCeEeeeccccccceeeccccccccccc
Confidence            445566543221 233489999999999998877544556778999997643

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.51  E-value=1.2  Score=30.98  Aligned_cols=52  Identities=8%  Similarity=-0.096  Sum_probs=37.4

Q ss_pred             EEEEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCeEEEEEecCCcEE
Q 027585           99 MNRVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNVFYSKVLSAGEMF  151 (221)
Q Consensus        99 ~~~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~  151 (221)
                      +....+.||..+-..-.+. ..+.+|++|.+.+.....+.......+.+|+.+
T Consensus        39 ~~~~~~~~g~~I~~~G~~~-~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~f   90 (136)
T d1cx4a1          39 MFEKLVKEGEHVIDQGDDG-DNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF   90 (136)
T ss_dssp             CEEEEECTTCEEECTTSCC-CEEEEEEECEEEEEEEETTEEEEEEEEESSCEE
T ss_pred             eEEEEECCCCEEEECCCcc-hhhhhhhhheeEEeeccccceeeeeccCCcccc
Confidence            4567788888765555554 899999999999976554333334578899876

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.25  E-value=4.7  Score=27.80  Aligned_cols=49  Identities=12%  Similarity=0.148  Sum_probs=33.6

Q ss_pred             EEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE
Q 027585          102 VDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF  151 (221)
Q Consensus       102 v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~  151 (221)
                      ..+++|...--.-- ....+.+|++|.+++...+++|+ .....+++||.+
T Consensus        27 ~~y~kg~~i~~~g~-~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~   76 (139)
T d3e5ua2          27 RDFAKGSAVIMPGE-EITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI   76 (139)
T ss_dssp             EEECTTCEEECTTC-CCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEECCCCEEEeCCC-CCCEEEEEEeccceEEEeeccccccceeecccccee
Confidence            34455554322222 34789999999999988887765 345689999975

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=81.54  E-value=1.1  Score=31.36  Aligned_cols=50  Identities=10%  Similarity=0.069  Sum_probs=32.1

Q ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEeCEEEEEEEecCCe-EEEEEecCCcEE
Q 027585          101 RVDFAPGGLNPPHSHPRASESGIVIKGKLLVGFFTTNNV-FYSKVLSAGEMF  151 (221)
Q Consensus       101 ~v~l~Pgg~~~~H~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~  151 (221)
                      ...+++|...-..--+ +..+.+|++|.+++...+++|+ .....+.+||++
T Consensus        26 ~~~~~~g~~l~~~g~~-~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~   76 (142)
T d2gaua2          26 PFPCKKASTVFSEGDI-PNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFF   76 (142)
T ss_dssp             EEEECTTCEEECTTCC-CCEEEEEEESCEEEEC-----CCCEEEEECTTCEE
T ss_pred             EEEECCCCEEEeCCCc-cceEEEEEecceeeEeeccccceeeeecccccchh
Confidence            4566777764333333 4899999999999998877775 345679999964

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.30  E-value=0.55  Score=38.33  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CcEEEEEEe-CEEEEEEEecC-------------C----eEEEEEecCCcEEEECCCCeEE
Q 027585          118 ASESGIVIK-GKLLVGFFTTN-------------N----VFYSKVLSAGEMFVIPRGLIHF  160 (221)
Q Consensus       118 a~Ei~yVl~-G~~~v~~~~~~-------------~----~~~~~~L~~GDv~~~P~g~~H~  160 (221)
                      -+|++|+++ .++.+++....             +    -+....+++||++++|+|.+|.
T Consensus       116 k~E~~~~l~~~~~~~Gf~~~~~~e~l~~~i~~~~~~~~~lln~v~v~~Gd~i~IpaGtvHA  176 (299)
T d1zx5a1         116 VESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHA  176 (299)
T ss_dssp             CCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEE
T ss_pred             cEEEEEEcCCcceEeeccCCCCHHHHHHHHhccchhhHhhccEEEcccCCEEEeCCCCcEE
Confidence            367888875 45666665431             1    2457899999999999999998