Citrus Sinensis ID: 027618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccEEEEEEEccccccccccccHccccHEHHcccccccHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHcccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEcc
Coil and Loop (DISEMBL)
mggsaidddweltspsngerTVVLVGrtgngksatgnsilgrrafksrasssgvtstCEMQRTvlkdgqvvnvidtpglfdfsagsefvGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTggdeledndeTLEDylgrecpkplkkgatklrDQQFEvdslkgysKREISELKEQMHKSYEDQLKRITEMVPVMIF
Flexible Loop (DISEMBL)
mggsaidddweltspsngertvvlvgrtgngksatgnsilgrrafksrasssgvtstcemqrtvlkdgqvvNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRecpkplkkgatklrdqqfevdslkgyskreISELKEQMHKSYEDQLKRITEMVPVMIF
Low Complexity Region (SEG)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLvvfsvrsrfsQEEEAALHSLQTLFGKKIFDYMIVVFtggdeledndetledYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Disordered region (IsUnstruct)
*********************************************************CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL***********************************************************************
Disordered Region (DISOPRED)
*********************VVLVGRTGNGKSATGNSILGRRAFKS**********CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Disordered Region (DISEMBL)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF*************EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Disordered Region (DISPRO)
*****************GERTVVLVGRTGNGKSAT*NS*LGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMVPVMIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.737	0.461	0.597	2e-51
O81025	463	Putative protein PHLOEM P	no	no	0.687	0.328	0.539	7e-46
Q9NUV9	329	GTPase IMAP family member	yes	no	0.683	0.458	0.410	2e-28
Q8K3K9	310	GTPase IMAP family member	no	no	0.692	0.493	0.379	1e-22
Q8K349	305	GTPase IMAP family member	no	no	0.606	0.439	0.435	1e-21
Q99JY3	219	GTPase IMAP family member	no	no	0.638	0.643	0.383	3e-21
Q8NHV1	300	GTPase IMAP family member	no	no	0.579	0.426	0.392	2e-20
Q5FVN6	304	GTPase IMAP family member	no	no	0.606	0.440	0.421	5e-20
Q75N62	688	GTPase IMAP family member	no	no	0.660	0.212	0.387	2e-19
Q96F15	307	GTPase IMAP family member	no	no	0.701	0.504	0.339	7e-19

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 8   DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
           D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct: 32  DEFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query: 68  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
           G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL+V SVR+R SQEEE  L +
Sbjct: 91  GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query: 128 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK+
Sbjct: 151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKR 194

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  183 bits (465), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 114/152 (75%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
            D     + +  EI+ C+ MA++GIHAVL+V S R R S+EEE+ +++LQ +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            IVVFTGGD+LE++D+TL+DY    CP+ L K
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTK 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
           +   +MI++FT  D+L D +  L DYL RE P+ ++
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQ 176

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE   ++  DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIW-DGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    KEI +C+ +   G HA+L+V  +   ++ EE  A   L ++F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179
           ++ T  D+LED D  + +YL    P+ L++   + R++
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNR 185

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++A    LQ +FG  I  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  ++L +   +LE+Y+
Sbjct: 222 LVFTRKEDLAEG--SLEEYI 239

Mus musculus (taxid: 10090)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 5/146 (3%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    +EI + + +   G HA+L+V  +  R++ EE  A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPK 167
           ++ T  D+LED D  + +YL  + PK
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPK 173

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                +   KEI +CI  +  G HA+++V  +  R+++EE+  +  ++ +FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDELE 151
           ++FT  +ELE
Sbjct: 129 ILFTRKEELE 138

Homo sapiens (taxid: 9606)

>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +  
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++ A   LQ +FG  I  Y I
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTI 220

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  +EL +   +LE+Y+
Sbjct: 221 LVFTRKEELAEG--SLEEYI 238

Rattus norvegicus (taxid: 10116)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 9/155 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP   
Sbjct: 477 NIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPSFI 535

Query: 81  DFSAGSE----FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 136
             + G+E     + +EI  C+ + ++G+   ++V  +  RF+QE+E  +  L+  F + I
Sbjct: 536 Q-TPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENI 593

Query: 137 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
             YMIV+FT  ++L D D  L DY      K LKK
Sbjct: 594 MKYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKK 626

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 102/171 (59%), Gaps = 16/171 (9%)

Query: 7   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK 66
           +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   
Sbjct: 18  EDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTW 73

Query: 67  DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 126
           +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L+V  +  RF+ ++  A+ 
Sbjct: 74  NGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIR 132

Query: 127 SLQTLFGKKIFDYMIVVFT-----GGDELED-----NDETLEDYLGRECPK 167
            ++ +FG     +++++FT     GG  L+D     ++ +L+D L REC +
Sbjct: 133 KVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKD-LVRECER 182

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
296089429	345	unnamed protein product [Vitis vinifera]	0.995	0.637	0.658	5e-96
224146305	335	predicted protein [Populus trichocarpa]	0.995	0.656	0.659	4e-95
255539412	339	aig1, putative [Ricinus communis] gi|223	0.995	0.648	0.650	2e-91
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.995	0.647	0.643	1e-90
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.959	0.605	0.617	4e-84
147836179	566	hypothetical protein VITISV_037325 [Viti	0.778	0.303	0.854	1e-83
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.968	0.622	0.590	1e-81
224136037	259	predicted protein [Populus trichocarpa]	0.918	0.783	0.633	7e-80
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.977	0.633	0.625	1e-79
363814318	336	uncharacterized protein LOC100807910 [Gl	0.977	0.642	0.586	4e-78

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 203/275 (73%), Gaps = 55/275 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMVPVMI 220
           L+GYSKREI  LKEQMHKSYE+QLKRITEMV V +
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/276 (65%), Positives = 204/276 (73%), Gaps = 56/276 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSA+DDDWE  SPSNG RT+VLVGRTGNGKSATGNSILGR+AFKSRASSSGVTS+CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ++NVIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------- 170
           EEAAL SLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK          
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 171 -----------KGATKLRD----------------------------------QQFEVDS 185
                      KG  ++++                                  QQ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 186 LKG-YSKREISELKEQMHKSYEDQLKRITEMVPVMI 220
           LKG +S  EISEL+EQM + YEDQLKR+T+MV + +
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKL 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 199/275 (72%), Gaps = 55/275 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAIDDDWELTSPSNG RTVVLVGRTGNGKSATGNS+LGR+AFKSRASSSGVTSTCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q+TV+ DGQV+NV+DTPGLFDFSA SEFVGKEIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGAT------ 174
           EEAAL SLQTLFG KIFDYMIVVFTGGDELEDNDETLEDYLGRECP+PL++  T      
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 175 -----------KLRDQQFEVDSL----------KGYSKREISELK--------------- 198
                      K  +Q  ++ SL          + Y+     ELK               
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 199 -------------EQMHKSYEDQLKRITEMVPVMI 220
                        EQMH+SYE+QLKRITEMV + +
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKL 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/275 (64%), Positives = 202/275 (73%), Gaps = 55/275 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 172 ----GATKLRDQQFE--------VDSL------------------KGYSK---------- 191
                 TK   +++E        V+S+                  KG  K          
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 192 ------REISELKEQMHKSYEDQLKRITEMVPVMI 220
                 REI  LKEQMHKSYE+QLKRITEMV V +
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKL 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 165/267 (61%), Positives = 189/267 (70%), Gaps = 55/267 (20%)

Query: 5   AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV 64
           +IDDDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+AFKSRASSS V+++CE++ T 
Sbjct: 19  SIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTE 78

Query: 65  LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 124
           L +GQ+VNVIDTPGLFD SAGSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++EEE A
Sbjct: 79  LNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETA 138

Query: 125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK------------- 171
           L SLQTLFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLK+             
Sbjct: 139 LRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFD 198

Query: 172 ---------------------------GATKLRDQQF---------------EVDSLKGY 189
                                      G     D+ F               EVDSLKGY
Sbjct: 199 NKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGY 258

Query: 190 SKREISELKEQMHKSYEDQLKRITEMV 216
           SK EI E K+QM ++Y++QLKRITEMV
Sbjct: 259 SKGEILEFKKQMQQTYDEQLKRITEMV 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 164/172 (95%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKG 172
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDE LEDYLGRECP+PLKKG
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDEXLEDYLGRECPEPLKKG 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/271 (59%), Positives = 192/271 (70%), Gaps = 57/271 (21%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAI DDWE  +  NG RT+VLVGRTGNGKSATGNSILGR+AF+S +SS+GVTSTCE+
Sbjct: 6   MGGSAISDDWEFAA--NGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ+++VIDTPGLFDFSA  EF+G EIVKCI MAKDGIHAVLVV SVR+RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------- 170
           E+AA+ SL+  FG KI DYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK          
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 171 -----------KGATKLR----------------------------------DQQFEVDS 185
                      K A +L+                                  +Q  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMV 216
           L GYSK+EI ELKEQM KSYE+QL+RITE+V
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVV 274

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 164/259 (63%), Positives = 179/259 (69%), Gaps = 56/259 (21%)

Query: 13  TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 72
            SPSNG RTVVLVGRTGNGKSATGNSILG++AFKSRASSSGVTSTCE+Q TVL DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 132
           VIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQEEEAAL SLQTLF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-----------------KGATK 175
           G KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK                 K   K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 176 LRDQQFEVDSL----------KGYSKREISEL---------------------------- 197
             +Q  E+ SL          + YS    +E+                            
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISE 240

Query: 198 -KEQMHKSYEDQLKRITEM 215
            KEQM   YE+QLKR+TEM
Sbjct: 241 LKEQMQIQYEEQLKRVTEM 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/275 (62%), Positives = 194/275 (70%), Gaps = 59/275 (21%)

Query: 1   MGGSAIDDDWEL--TSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS 56
           MGGSAI++DWEL  TSP+NG   RTVVLVGRTGNGKSATGNSILGR+AFKSRA SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116
           T E+Q TVL DGQ ++VIDTPG+FDFSAGS+FVGKEIVKCI MAKDGIHAVLVVFSVR+R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK------ 170
           FS EEEAAL SLQTLFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK      
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 171 ----------------------------------KGATKLRDQQF--------------- 181
                                              G     D+ F               
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 182 EVDSLKGYSKREISELKEQMHKSYEDQLKRITEMV 216
           EVDSL+GY+++E+ ELKEQMH+SY++QLKRITEMV
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMV 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/271 (58%), Positives = 186/271 (68%), Gaps = 55/271 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+I DDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+ FKSRASSS V+++CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q T L DGQ+VNVIDTPGLFD S GSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EE AL SLQTLFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLK+         
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 172 ----GATKLRDQQF-EVDSLKGY------------------------------SKREISE 196
                 TK   ++F +V  L  +                               +RE+  
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 197 L-----------KEQMHKSYEDQLKRITEMV 216
           L           K+QM ++Y+DQLKRITE+V
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.769	0.497	0.567	1.3e-59
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.737	0.485	0.509	4.6e-42
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.737	0.461	0.493	1.4e-40
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.755	0.512	0.431	5.8e-40
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.868	0.617	0.434	1.3e-38
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.601	0.395	0.482	5.7e-38
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.927	0.520	0.400	9.2e-36
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.678	0.498	0.436	5e-35
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.855	0.565	0.380	3.2e-33
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.814	0.388	0.388	1.8e-32

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
 Identities = 97/171 (56%), Positives = 119/171 (69%)

Query:     1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
             MGG  ++DDWE  S SN +RT+VLVGRTGNGKSATGNSILGR+AF+SRA + GVTSTCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQE 120
             QR V +DG ++NV+DTPGLFD S  ++F+GKEIV+CI +A+DGIHA+L          +E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVRRLA-EE 124

Query:   121 EEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKK 171
             E+  L  LQ LFG KI DYMIVVF               YL   CP+ LK+
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKE 175

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 83/163 (50%), Positives = 105/163 (64%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D WEL S S   + VVLVGRTGNGKSATGNSI+GR+ F+S+  + GVT+ C+  R V  D
Sbjct:    24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPD 83

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD +  +EF+ KEIV C+ +A++G+HAV+          QEEE AL +
Sbjct:    84 GPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCT 143

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             LQ LFG KI DY+IVVF               YL   CP+ LK
Sbjct:   144 LQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLK 186

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 81/164 (49%), Positives = 100/164 (60%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct:    32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +
Sbjct:    91 GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKK 171
             LQ LFG KI DY+IVVF               YLG   P  LK+
Sbjct:   151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKR 194

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query:     4 SAIDDDWELTSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ 61
             + ++D  +L  PS  E  + +VLVGRTGNGKSATGNS++G++ F+S   ++GVT  CE  
Sbjct:     2 AGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETC 61

Query:    62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEE 121
               V   G  +NVIDTPGLFD S  +E++ +EI+ C+ +A+DG+HAV+          QEE
Sbjct:    62 VAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEE 121

Query:   122 EAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             EA L++LQ +FG +I DY++V+F               YL + CP+ LK
Sbjct:   122 EATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLK 170

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/198 (43%), Positives = 120/198 (60%)

Query:    16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
             S     +VLVGRTGNGKSATGNS++G++ F S+A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
             TPGLFD S  +E++ KEIV+C+ +A+ GIHAVL          QEEE  L +LQ LFG +
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 IFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREIS 195
             I DY++VVF               YLGR+CP  +K+      +++  +D+ K + +    
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDN-KTHDE---G 188

Query:   196 ELKEQMHK--SYEDQLKR 211
             +  EQ+HK  S  D ++R
Sbjct:   189 KKAEQVHKLLSLVDDIRR 206

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 67/139 (48%), Positives = 97/139 (69%)

Query:     6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL 65
             +++DW+   P   ERT+VL+GRTGNGKSATGNSILG+  F+S+A    +T  C++ ++ L
Sbjct:    10 VENDWK---P---ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAAL 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+C+ +AK GI AVL          +EE++ L
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HSLQTLFGKKIFDYMIVVF 144
              +L+ LFG +I DY+IVVF
Sbjct:   124 RTLKILFGSQIVDYIIVVF 142

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 85/212 (40%), Positives = 126/212 (59%)

Query:     3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
             GS ++   +L       RT++LVGR+GNGKSATGNSILGR+AFKS+  +SGVT+ CE+Q 
Sbjct:    31 GSGLEVTCDLRLEHKPARTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQS 90

Query:    63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEE 122
             + L +GQ++NVIDTPGLF  S  +EF  +EI++C  + K+GI AVL          +EE+
Sbjct:    91 STLPNGQIINVIDTPGLFSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEK 150

Query:   123 AALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFE 182
             +AL +L+ LFG KI DYMIVVF               YL  + P   K+      D++  
Sbjct:   151 SALFALKILFGSKIVDYMIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKV- 207

Query:   183 VDSLKGYSKREISELKEQMHK--SYEDQLKRI 212
                 +  S   +S+  +Q+ +  +Y +++ R+
Sbjct:   208 --LFRNRSNAPVSQKAKQVQELLNYVEEIARL 237

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 69/158 (43%), Positives = 94/158 (59%)

Query:    15 PSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 72
             PS  E  R +VLVG TGNGKS+TGNS++G+  F           TC+  +T+  DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKA-KTL--DGQIIN 60

Query:    73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLF 132
             VIDTPGLFD S  ++++ KEI+ C+ +   G+HAV+          +EEEAAL+ LQ LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             G KI DY++V+F               YL R CP+ LK
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLK 158

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/189 (38%), Positives = 107/189 (56%)

Query:    11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
             E  S     + +VLVGRTGNGKSATGNS++G+  F S A ++GVT TC+  + V   G  
Sbjct:     5 EQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSR 64

Query:    71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQT 130
             +NVIDTPGLFD S  +EF+ KEI+ C+ +A+ G+H V+          QEEE  L +LQ 
Sbjct:    65 INVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQV 124

Query:   131 LFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYS 190
             LFG +I DY+IV+F               Y  + CP  LK       D++   +++    
Sbjct:   125 LFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDK 184

Query:   191 KREISELKE 199
              +++ ++++
Sbjct:   185 HKKVEQVQQ 193

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/180 (38%), Positives = 105/180 (58%)

Query:    20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDY 139
              D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKE 199
              IVVF               Y    CP+ L K       ++   D+     K+++ ++K+
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.1902.1 hypothetical protein (327 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
pfam04548	211	pfam04548, AIG1, AIG1 family	3e-76
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	5e-70
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	2e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-09
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	4e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	5e-07
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	6e-07
cd00880	161	cd00880, Era_like, E	3e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	8e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.001
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.002
pfam00735	280	pfam00735, Septin, Septin	0.002
PRK15494	339	PRK15494, era, GTPase Era; Provisional	0.003
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  228 bits (584), Expect = 3e-76
 Identities = 87/152 (57%), Positives = 116/152 (76%), Gaps = 4/152 (2%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGNSILGR+AF+S+  + GVT TC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S  ++F+ KEI++C+ +A+ G HAVL+V S+  RF++EEE AL +LQ LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           MIVVFT  D+LED+   L+DYL   CP+ LK+
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKE 148

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  212 bits (541), Expect = 5e-70
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 5/152 (3%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGN+ILGR+ F+S+ S+SGVT TC+ +  V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S   E + KEI++C+ ++  G HA L+V  +  RF++EEE A+  LQ LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            IV+FT GD+LE    +LEDYL   C   LK+
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE-ALKR 147

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++++G+TG GKS+T NSI G R     A  S      E+ RTV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIF 137
           +  +  + V ++I+  I   + K  I  VL V  +   R    +   L ++   FG  I+
Sbjct: 91  E--SQDQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIW 148

Query: 138 DYMIVVFT 145
              IVV T
Sbjct: 149 RNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 24/181 (13%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTPGLFD 81
           V+VGR G GKS+  N++LG       +   G T   ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  FSA-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           F   G E + + +++       G   +L+V     R S EE+A L  L+ L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
           I+V    D L +  E  E     E  K L           FEV +  G     + EL E+
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGVPV-------FEVSAKTG---EGVDELFEK 158

Query: 201 M 201
           +
Sbjct: 159 L 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVGR   GKS   N++ G +     +   G T   +    VL  G+ + ++DTPG  
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPG-L 56

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
              A      +   + +   ++    +L+V       ++++E  L  L+ L  K     +
Sbjct: 57  IEGASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----I 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
            ++++G++G GKSAT NSI G   F + A   G TS  E++  V   G  + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL 176

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            + +VG    GKS   N++LG     +    +  T+   + R  L  G  V ++DTPGL 
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLPT--GVTPTTAVITVLRYGLLKG--VVLVDTPGLN 57

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
                   + +  +           AV+ V S     ++ E   L  +    GKKIF   
Sbjct: 58  STIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF--- 107

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDS---LKGYSKREISEL 197
             V    D L + +        RE    L+ G      + F V +   L+   + +   L
Sbjct: 108 -FVLNKIDLLSEEELEEVLEYSREELGVLELG--GGEPRIFPVSAKEALEARLQGDEELL 164

Query: 198 KEQMHKSYEDQLKR 211
           ++   +  E+ L+ 
Sbjct: 165 EQSGFEELEEHLEE 178

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82
            + GR   GKS+  N++LG+      +   G T     +   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142
                   +E  +      D    VL+V  V S  +  EE A   L    GK +    ++
Sbjct: 60  GGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDELEDNDE 155
           V    D + +++E
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
          T++++G+ G GKS+T NSI+G R     A  S       + RT  + G  +N+IDTPGL 
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 81 D 81
          +
Sbjct: 98 E 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTP 77
           E  +V+VG    GKS   N +LG +   +     G T                 N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 78  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVL 108
           G  D+ A      + +   + +  D +  VL
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DIVILVL 89

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSR---ASSSGVTSTCEMQRT--VLKDGQV---VN 72
           +++VG +G GKS   N++ G + + S+   A    +T T E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 73 VIDTPGLFDF 82
          VIDTPG  D 
Sbjct: 66 VIDTPGFGDN 75

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQV---VN 72
          T+++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFDFS 83
          VIDTPG  D  
Sbjct: 66 VIDTPGFGDAI 76

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV------LKDGQVVNVI 74
           +V ++GR  +GKS   N I+G +        S VT   +  R++      LKD QV+ + 
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGEKL-------SIVTPKVQTTRSIITGIITLKDTQVI-LY 105

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
           DTPG+F+     E   K +V+C   +      VL++      F       L  L++L   
Sbjct: 106 DTPGIFEPKGSLE---KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV 162

Query: 135 KIF 137
            IF
Sbjct: 163 PIF 165

Length = 339

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVT-----STCEMQRTVLKDGQVVNV 73
             V +VGR   GKS   N + GRR   +  S   GVT        E        G+   +
Sbjct: 4   PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWL------GREFIL 55

Query: 74  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 122
           IDT GL D     + + + I +   +A +    +L V   R   +  +E
Sbjct: 56  IDTGGLDDGDE--DELQELIREQALIAIEEADVILFVVDGREGITPADE 102

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.98
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.88
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.81
COG0218	200	Predicted GTPase [General function prediction only	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.77
PRK15494	339	era GTPase Era; Provisional	99.77
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.77
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.76
PRK00089	292	era GTPase Era; Reviewed	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.76
PRK03003	472	GTP-binding protein Der; Reviewed	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.75
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.75
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.74
PRK12299	335	obgE GTPase CgtA; Reviewed	99.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.74
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.74
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.73
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.73
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.73
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.73
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.72
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.72
COG1160	444	Predicted GTPases [General function prediction onl	99.72
PRK12298	390	obgE GTPase CgtA; Reviewed	99.71
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.71
PTZ00369	189	Ras-like protein; Provisional	99.71
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.71
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.71
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.71
PRK12297	424	obgE GTPase CgtA; Reviewed	99.71
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.71
PRK00093	435	GTP-binding protein Der; Reviewed	99.7
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.7
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.7
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.7
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.7
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.69
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.69
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.69
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.69
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.69
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.69
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.69
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.69
PRK03003	472	GTP-binding protein Der; Reviewed	99.69
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.69
PRK11058	426	GTPase HflX; Provisional	99.69
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.68
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.68
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.68
PRK04213	201	GTP-binding protein; Provisional	99.68
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.68
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.68
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.68
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.68
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.68
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.68
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.68
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.67
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.67
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.67
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.67
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.67
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.67
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.67
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.67
PLN03110	216	Rab GTPase; Provisional	99.67
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.66
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.66
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.66
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.66
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.66
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.66
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.66
PRK12296	500	obgE GTPase CgtA; Reviewed	99.66
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.66
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.66
COG0486	454	ThdF Predicted GTPase [General function prediction	99.66
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.66
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.66
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.66
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.65
cd00881	189	GTP_translation_factor GTP translation factor fami	99.65
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.65
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.65
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.65
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.65
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.65
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.65
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.65
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.65
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.65
PLN03108	210	Rab family protein; Provisional	99.64
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.64
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.64
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.64
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.64
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.64
PLN03118	211	Rab family protein; Provisional	99.63
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.63
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.63
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.63
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.63
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.63
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.63
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.63
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.63
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.62
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.62
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.62
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.62
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.62
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.62
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.62
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.62
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.62
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.62
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.62
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.62
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.62
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.62
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.61
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.61
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.61
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.61
COG3596	296	Predicted GTPase [General function prediction only	99.61
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.61
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.61
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.61
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.61
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.61
PTZ00133	182	ADP-ribosylation factor; Provisional	99.6
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.6
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.6
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.6
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.6
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.6
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.6
PLN00223	181	ADP-ribosylation factor; Provisional	99.6
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.6
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.6
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.59
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.59
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.59
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.59
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.59
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.59
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.58
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.58
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.58
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.58
CHL00071	409	tufA elongation factor Tu	99.58
PRK05306	787	infB translation initiation factor IF-2; Validated	99.58
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.58
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.58
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.58
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.57
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.57
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.57
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.57
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.57
COG2262	411	HflX GTPases [General function prediction only]	99.57
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.57
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.57
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.56
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.56
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.56
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.56
PRK12317	425	elongation factor 1-alpha; Reviewed	99.55
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.55
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.55
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.54
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.54
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.54
PLN00023	334	GTP-binding protein; Provisional	99.53
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.53
CHL00189	742	infB translation initiation factor 2; Provisional	99.53
PRK12735	396	elongation factor Tu; Reviewed	99.52
PRK04004	586	translation initiation factor IF-2; Validated	99.52
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.52
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.52
PRK00007	693	elongation factor G; Reviewed	99.52
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.52
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.52
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.52
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.51
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.51
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.51
PRK09866	741	hypothetical protein; Provisional	99.51
PLN03127	447	Elongation factor Tu; Provisional	99.51
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.51
PRK00049	396	elongation factor Tu; Reviewed	99.51
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.5
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.5
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.5
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.5
PRK12739	691	elongation factor G; Reviewed	99.5
PRK10218	607	GTP-binding protein; Provisional	99.5
PRK12736	394	elongation factor Tu; Reviewed	99.5
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.49
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.49
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.49
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.48
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.48
KOG0394	210	consensus Ras-related GTPase [General function pre	99.48
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.47
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.47
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.47
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.47
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.47
PLN03126	478	Elongation factor Tu; Provisional	99.47
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.46
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.45
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.45
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.44
PRK13351	687	elongation factor G; Reviewed	99.44
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.44
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.43
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.43
COG0536	369	Obg Predicted GTPase [General function prediction	99.43
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.43
COG1100	219	GTPase SAR1 and related small G proteins [General	99.42
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.42
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.42
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.41
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.41
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.41
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.4
PRK05433	600	GTP-binding protein LepA; Provisional	99.4
KOG1145	683	consensus Mitochondrial translation initiation fac	99.39
COG1163	365	DRG Predicted GTPase [General function prediction	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.37
PTZ00141	446	elongation factor 1- alpha; Provisional	99.37
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.36
COG2229	187	Predicted GTPase [General function prediction only	99.36
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.36
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.34
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.34
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.33
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.33
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.32
KOG0395	196	consensus Ras-related GTPase [General function pre	99.29
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.29
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.28
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.28
PTZ00258	390	GTP-binding protein; Provisional	99.27
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.26
PRK09601	364	GTP-binding protein YchF; Reviewed	99.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.25
PRK07560	731	elongation factor EF-2; Reviewed	99.23
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.21
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.2
PRK12740	668	elongation factor G; Reviewed	99.2
PLN00043	447	elongation factor 1-alpha; Provisional	99.19
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	99.19
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.17
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.15
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.15
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.15
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.14
PRK09602	396	translation-associated GTPase; Reviewed	99.13
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.12
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.11
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.11
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.11
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.09
KOG2486	320	consensus Predicted GTPase [General function predi	99.07
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.07
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.05
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.05
COG3523	1188	IcmF Type VI protein secretion system component Va	99.04
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.04
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.02
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.01
PRK13768	253	GTPase; Provisional	99.01
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.01
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.97
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.97
COG1162	301	Predicted GTPases [General function prediction onl	98.97
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.95
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.94
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.93
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.92
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.91
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.91
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.9
KOG0410	410	consensus Predicted GTP binding protein [General f	98.9
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.89
KOG0090	238	consensus Signal recognition particle receptor, be	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.86
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.85
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.84
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.84
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.83
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.83
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.82
PRK00098	298	GTPase RsgA; Reviewed	98.82
PRK14845	1049	translation initiation factor IF-2; Provisional	98.81
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.8
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.79
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.79
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.78
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.77
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.76
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.76
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.74
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
COG1161	322	Predicted GTPases [General function prediction onl	98.73
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.72
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.72
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.71
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.7
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.7
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.67
PRK10416	318	signal recognition particle-docking protein FtsY;	98.67
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.67
PTZ00099	176	rab6; Provisional	98.67
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.65
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.65
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.65
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.62
PRK13796	365	GTPase YqeH; Provisional	98.61
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.59
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.58
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.58
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.57
PRK14974	336	cell division protein FtsY; Provisional	98.56
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.55
KOG1673	205	consensus Ras GTPases [General function prediction	98.54
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.52
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.5
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.5
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.5
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.5
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.48
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.47
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.47
PRK10867	433	signal recognition particle protein; Provisional	98.47
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.47
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.47
KOG0460	449	consensus Mitochondrial translation elongation fac	98.46
TIGR00959	428	ffh signal recognition particle protein. This mode	98.4
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.39
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.37
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.37
cd03112	158	CobW_like The function of this protein family is u	98.35
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.35
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.35
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.33
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.33
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.31
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.29
cd03246	173	ABCC_Protease_Secretion This family represents the	98.28
COG0488	530	Uup ATPase components of ABC transporters with dup	98.28
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.26
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.21
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.18
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.18
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.17
PRK01889	356	GTPase RsgA; Reviewed	98.17
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.13
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.12
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.11
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.11
KOG2484	435	consensus GTPase [General function prediction only	98.09
COG4559	259	ABC-type hemin transport system, ATPase component	98.09
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.09
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.07
COG0488	530	Uup ATPase components of ABC transporters with dup	98.07
PF00004	132	AAA: ATPase family associated with various cellula	98.07
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.07
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.06
cd03114	148	ArgK-like The function of this protein family is u	98.06
COG4988	559	CydD ABC-type transport system involved in cytochr	98.04
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.04
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.02
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.02
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.02
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.01
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.0
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.99
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.99
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.98
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.94
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.94
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.93
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.91
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.9
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.88
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.88
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.88
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.87
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.87
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.87
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.86
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.85
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.85
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.83
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.83
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.83
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.82
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.82
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.81
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.81
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.81
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.81
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.8
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.8
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.79
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.79
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.79
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.79
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.79
KOG1533	290	consensus Predicted GTPase [General function predi	97.79
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.78
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.78
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.78
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.78
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.78
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.78
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.78
cd03111	106	CpaE_like This protein family consists of proteins	97.78
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.78
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.77
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.77
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.77
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.77
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.76
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.76
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.76
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.76
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.75
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.75
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.75
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.75
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.75
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.75
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.75
PRK10908	222	cell division protein FtsE; Provisional	97.74
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.74
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.74
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.74
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.74
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.74
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.73
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.73
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.73
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.73
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.73
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.72
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.72
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.72
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.72
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.72
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.72
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.72
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.71
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.71
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.71
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.71
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.71
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.71
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.7
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.7
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.7
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.7
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.69
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.69
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.69
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.69
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.69

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.98  E-value=3.1e-31  Score=202.22  Aligned_cols=179  Identities=41%  Similarity=0.682  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+|+|++|+||||++|+|+|...+..+....+.|..+......+ .+..+.||||||+.+.....+++.+++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            5899999999999999999999999888777778888898888877 999999999999999887778889999999998


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhh---------
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------  170 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~---------  170 (221)
                      +.+++|++|+|++++ +++..+...++.+.+.||..+|.+++||+|++|.+.  +..+++|+++..+..|+         
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCE
Confidence            999999999999999 999999999999999999999999999999999988  55577777743333333         


Q ss_pred             ----------------hhHHHHHhHHHHHHhcCC--CCHHHHHHHHHHHH
Q 027618          171 ----------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMH  202 (221)
Q Consensus       171 ----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  202 (221)
                                      .-...+..+.+++.++++  |+++++++.+++..
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~  206 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE  206 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence                            123444667777777776  99999999887654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.96  E-value=4e-28  Score=183.26  Aligned_cols=140  Identities=56%  Similarity=0.894  Sum_probs=124.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|++|+|||||+|+|+|...+.......+.|..+......+ .+..+.||||||+.++....+.+..++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999988766666677888888888878 889999999999998876667778888888888


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (221)
                      +.+++|++++|+++. +++..+...++.+++.||...+.++++|+|++|.+.  ...+++|+..
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~  140 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLEN  140 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHh
Confidence            889999999999999 499999999999999999988899999999999998  5678888874

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.91  E-value=6.5e-23  Score=161.30  Aligned_cols=156  Identities=24%  Similarity=0.295  Sum_probs=113.6

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      +.......+|+++|.+|+||||++|+|+|........ ..+.+..+....... .+..+.||||||+.+....++... +
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~  108 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-N  108 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-H
Confidence            3444567899999999999999999999987643322 122233333333445 788999999999997533222222 2


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhh
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK  171 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~  171 (221)
                      ..+++. ...++|++|||.+.+ .+++..+...++.+++.||..+|.+++|++||+|...+++.++++|+.+ +.+.++.
T Consensus       109 ~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       109 IIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             HHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            222221 224789999997664 3788899999999999999999999999999999886668899999984 6666664


Q ss_pred             hH
Q 027618          172 GA  173 (221)
Q Consensus       172 ~~  173 (221)
                      ..
T Consensus       187 ~i  188 (313)
T TIGR00991       187 VI  188 (313)
T ss_pred             HH
Confidence            33

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.88  E-value=6.3e-21  Score=161.43  Aligned_cols=153  Identities=21%  Similarity=0.291  Sum_probs=113.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      -..+|+|+|++|+||||++|+|+|...+....... .|+.+......+ .+..+.||||||+.++.... ....++.+++
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence            34789999999999999999999998766553333 344444444444 78899999999999864332 2344555555


Q ss_pred             Hhhc--CCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh-----hhHHHHhcccCCchh
Q 027618           98 GMAK--DGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPL  169 (221)
Q Consensus        98 ~~~~--~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~l~~~~~~~l  169 (221)
                      ..++  .++|++|||+.++.. ...++..+++.+++.||..+|.++|||+|++|...+++     .++++|+.+ +++.+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L  272 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV  272 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence            4332  368999999988622 33467899999999999999999999999999997543     689999984 66666


Q ss_pred             hhhHH
Q 027618          170 KKGAT  174 (221)
Q Consensus       170 ~~~~~  174 (221)
                      +....
T Consensus       273 q~~Ir  277 (763)
T TIGR00993       273 QQAIG  277 (763)
T ss_pred             HHHHH
Confidence            64433

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.86  E-value=1.7e-20  Score=145.65  Aligned_cols=136  Identities=28%  Similarity=0.337  Sum_probs=102.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+|+|++|+|||||+|+|+|....... ...+.|..+......+ .+..+.||||||+.+...+. ...+.+..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~~  104 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKILS  104 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHHH
Confidence            455699999999999999999999998765443 2334566666666666 78899999999999763221 12223333


Q ss_pred             HHHhhc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           96 CIGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        96 ~~~~~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      .+..++  ..+|+++||..++ .+++..+...++.+++.||..+|.++++|+||+|...+++
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            332222  3578999998776 3678888999999999999999999999999999986543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=2.7e-20  Score=151.28  Aligned_cols=156  Identities=24%  Similarity=0.224  Sum_probs=128.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|.|++|||||+|+|+|....... ...|.|+...+....| .+..+.+|||+|+...  ..+.+.+++......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence            68999999999999999999999876554 5778999999999999 8888999999999862  345678888888888


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      ++..+|++|||+|..+.+++.|....+.|++.     .+|+++|+||+|.... ....-+|.+-.-...+..|+.-.+.+
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~-e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA-EELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh-hhhHHHHHhcCCCCceEeehhhccCH
Confidence            88999999999999999999999999999853     3489999999998742 33455566555556666777777777


Q ss_pred             HHHHHh
Q 027618          180 QFEVDS  185 (221)
Q Consensus       180 ~~~~~~  185 (221)
                      .++.+.
T Consensus       154 ~dLld~  159 (444)
T COG1160         154 GDLLDA  159 (444)
T ss_pred             HHHHHH
Confidence            766665

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=6.9e-20  Score=141.54  Aligned_cols=124  Identities=22%  Similarity=0.306  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..|+++|+|++|||||+|+|+|.+....  ++.+.|+......+......++.++||||++.+   ...+.+.+.+++..
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~   81 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS   81 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence            5789999999999999999999998544  344445544444444437889999999999975   45567888888999


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ++..+|+++||+++++.++..+...++.+++.     ..|+++++||.|+..++
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~  130 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK  130 (298)
T ss_pred             HhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence            99999999999999988999999999998872     23899999999998743

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.81  E-value=2e-18  Score=119.48  Aligned_cols=116  Identities=22%  Similarity=0.324  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+|||||+|+|++......+ ...+.|..+......+ .+..+.++||||+.+....... .+.+...+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence            6899999999999999999997543333 2345666665556666 8888899999999874322221 12333344444


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                       ..+|++++|+++....+..+...+++++      ...|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence             7889999999987544445566666663      23479999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.8e-17  Score=121.67  Aligned_cols=125  Identities=20%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc---hHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~   93 (221)
                      ....-|+++|.+++|||||||+|++.+.......++|.|.....+.+.    ..+.++|.||++=.....   +.+...+
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence            355889999999999999999999987443444677888888876653    237899999987433332   2233444


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++... ....++++++|+...+...|.+.++++.+. +    .|++|++||+|++.
T Consensus        98 ~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~----i~~~vv~tK~DKi~  149 (200)
T COG0218          98 EEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-G----IPVIVVLTKADKLK  149 (200)
T ss_pred             HHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEccccCC
Confidence            4444432 336789999999988999999999999885 2    37999999999997

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=5.6e-18  Score=121.71  Aligned_cols=120  Identities=24%  Similarity=0.292  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|.+++|||||+|+|+|.....+  ..++.|.......+.+ .+..+.++|+||+++......  .+++...+. 
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~l-   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDYL-   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHHH-
Confidence            3799999999999999999999995433  4577888888888888 889999999999987544322  223322222 


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ....+|++++|+|++ .+. .+.....++.+. |    .|+++++||+|....
T Consensus        75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAER  120 (156)
T ss_dssp             HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHH
T ss_pred             hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHH
Confidence            246789999999998 443 234455555554 3    479999999998753

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.77  E-value=1.7e-17  Score=131.24  Aligned_cols=120  Identities=21%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|||||||+|+|+|........ ..++|..... ......+.++.++||||+.+..   ....+.+.+.+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i~-~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRIS-GIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcEE-EEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            68999999999999999999987643321 2233443332 3323256679999999998642   22344455556666


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|+++..+.. ..+++.+...     ..|+++|+||+|+..
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKF  121 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCC
Confidence            78889999999998655443 4445555432     347999999999874

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.77  E-value=2.2e-17  Score=134.17  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|.+|+|||||+|+|++........ ..++|.......+.+ .+.++.+|||||+.+...   .+...+.+....
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~~  127 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAWS  127 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHHH
Confidence            489999999999999999999987643221 223444444444555 677899999999975322   234445555555


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccC--CchhhhhHHHHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKKGATKLR  177 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~--~~~l~~~~~~~~  177 (221)
                      ++..+|++++|+|..+.+...+..+++.+++. +    .|.++|+||+|+.......+.+++....  ...+..|+....
T Consensus       128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~  202 (339)
T PRK15494        128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGK  202 (339)
T ss_pred             HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence            67788999999998877777777777766553 1    2577899999986422234455554322  233445555444


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      ++.+.++.
T Consensus       203 gv~eL~~~  210 (339)
T PRK15494        203 NIDGLLEY  210 (339)
T ss_pred             CHHHHHHH
Confidence            44444443

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.77  E-value=1.9e-17  Score=121.70  Aligned_cols=157  Identities=22%  Similarity=0.161  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH-HHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~~~   98 (221)
                      ++|+++|++|+|||||+|++++......  .....|.........+ .+..+.+|||||+.+....... +...   .+.
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~   74 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT   74 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence            4789999999999999999998765321  1223455555555555 6678999999998653222111 1111   111


Q ss_pred             hhcCCCcEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh-hHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~-~~~~~l~~~~~~~l~~~~~  174 (221)
                      .....+|++++|+|+++..+   .....+++.+++.+.   ..|+++|+||+|....... ...++........+..++.
T Consensus        75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (168)
T cd01897          75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTL  151 (168)
T ss_pred             HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEec
Confidence            11123589999999985433   222456666655432   3489999999998752211 1223333222234445666


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       152 ~~~gi~~l~~~  162 (168)
T cd01897         152 TEEGVDEVKNK  162 (168)
T ss_pred             ccCCHHHHHHH
Confidence            55555555543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01894 EngA1 EngA1 subfamily

Probab=99.76  E-value=2e-17  Score=119.97  Aligned_cols=119  Identities=25%  Similarity=0.287  Sum_probs=85.7

Q ss_pred             EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 027618           23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (221)
Q Consensus        23 ~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (221)
                      +++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.+...   ...+.+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            47899999999999999987643222 2334455555555555 678899999999986432   334445555555567


Q ss_pred             CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       103 ~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+|++++|+++.+..+..+....+.+++.     ..|+++|+||+|+..
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~  119 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK  119 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence            78999999999877766666666666543     248999999999876

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.76  E-value=4.2e-17  Score=130.53  Aligned_cols=123  Identities=21%  Similarity=0.296  Sum_probs=87.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ...|+++|++|||||||+|+|+|.......  ..+.|+...........+.++.++||||+.+..   ....+.+.....
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence            367999999999999999999998764332  222233322222222145689999999998643   234445555666


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++..+|++++|+|+++.++..+...++.+...     ..|+++|+||+|+..
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~  127 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK  127 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence            677889999999999976777776666666531     248999999999984

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=3e-17  Score=128.19  Aligned_cols=130  Identities=22%  Similarity=0.215  Sum_probs=94.6

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      ++-....++|++.|.+++|||||+++|++.+.  .-.+.+.+|.....++..+ ...++++|||||+.|.+.++.  ..-
T Consensus       162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~Er--N~I  236 (346)
T COG1084         162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEER--NEI  236 (346)
T ss_pred             CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHh--cHH
Confidence            44455669999999999999999999999875  3334566788888888887 888999999999998554332  222


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      -.+++.....-.++|+|++|.++  .++.+. ...++.++..|.    .|+++|+||.|...
T Consensus       237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~  294 (346)
T COG1084         237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD  294 (346)
T ss_pred             HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence            22233222233478999999874  455555 466666777655    47999999999875

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=3.8e-17  Score=138.58  Aligned_cols=158  Identities=22%  Similarity=0.174  Sum_probs=109.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...++|+++|.+|||||||+|+|++....... ...+.|.........+ .+..+.+|||||+...   ...+...+...
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~  110 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ  110 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence            44578999999999999999999987643332 3445666666666777 7888999999998631   22344556666


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                      +..++..+|++|+|+|++++.+..+..+.+.++..     ..|+++|+||+|..... ....++........+..|+...
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~~~~~~~~g~~~~~~iSA~~g  184 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-ADAAALWSLGLGEPHPVSALHG  184 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hhhHHHHhcCCCCeEEEEcCCC
Confidence            66677888999999999988888787777777642     34899999999976421 1222332222233345666655


Q ss_pred             HhHHHHHHh
Q 027618          177 RDQQFEVDS  185 (221)
Q Consensus       177 ~~~~~~~~~  185 (221)
                      .++.++++.
T Consensus       185 ~gi~eL~~~  193 (472)
T PRK03003        185 RGVGDLLDA  193 (472)
T ss_pred             CCcHHHHHH
Confidence            566555554

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=4.5e-17  Score=137.02  Aligned_cols=153  Identities=22%  Similarity=0.249  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+...   ...+...+...+..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            4899999999999999999997643222 3456777777777888 8889999999998642   233556666666677


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhHH
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQ  180 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  180 (221)
                      +..+|++++|+|+.++++..+..+.+++++.     ..|+++|+||+|...... ...++.+-.....+..|+....++.
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~~~-~~~~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKEDA-VAAEFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcccc-cHHHHHhcCCCCeEEEeCCcCCChH
Confidence            7888999999999988999988888888763     347999999999875322 2233333223334444554444444


Q ss_pred             HHHH
Q 027618          181 FEVD  184 (221)
Q Consensus       181 ~~~~  184 (221)
                      +.++
T Consensus       150 ~ll~  153 (429)
T TIGR03594       150 DLLD  153 (429)
T ss_pred             HHHH
Confidence            4444

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01898 Obg Obg subfamily

Probab=99.75  E-value=3.8e-17  Score=120.31  Aligned_cols=157  Identities=18%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .|+++|++|||||||+|+|++.... .+ ...+.|..+......+ .+. .+.++||||+.+.......+...+..    
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~-~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~----   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-IA-DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR----   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-cc-CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence            4899999999999999999986542 11 1223344555555555 444 89999999986432221122222222    


Q ss_pred             hcCCCcEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh--hhHHHHhccc-CCchhhhhHH
Q 027618          100 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND--ETLEDYLGRE-CPKPLKKGAT  174 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~--~~~~~~l~~~-~~~~l~~~~~  174 (221)
                      .+..+|++++|+|+++. -+... ..+.+.+.+........|+++|+||+|+.....  ..+..+..+. ....+..++.
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  154 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISAL  154 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecC
Confidence            23456999999999854 22222 456666665432222458999999999865221  1223333321 2233444554


Q ss_pred             HHHhHHHHHH
Q 027618          175 KLRDQQFEVD  184 (221)
Q Consensus       175 ~~~~~~~~~~  184 (221)
                      ....+.+.++
T Consensus       155 ~~~gi~~l~~  164 (170)
T cd01898         155 TGEGLDELLR  164 (170)
T ss_pred             CCCCHHHHHH
Confidence            4444444443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.75  E-value=7.3e-17  Score=122.54  Aligned_cols=158  Identities=25%  Similarity=0.227  Sum_probs=95.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      +..+|+++|++|||||||+|++++.......  ....|..+......+.....+.+|||||+.+..  .......+...+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~~  115 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRSTL  115 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHHH
Confidence            3479999999999999999999997643222  122333444444555233489999999986522  122222233222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                       .....+|++++|+|++++..... ..+.+.+... +.. ..|+++|+||+|+..  ...............+..|+...
T Consensus       116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~-~~~viiV~NK~Dl~~--~~~~~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAE-DIPMILVLNKIDLLD--DEELEERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcC-CCCEEEEEEccccCC--hHHHHHHhhcCCCceEEEEcCCC
Confidence             33567899999999986655544 3444555443 221 248999999999876  33333333323334455555555


Q ss_pred             HhHHHHHH
Q 027618          177 RDQQFEVD  184 (221)
Q Consensus       177 ~~~~~~~~  184 (221)
                      .++.+.++
T Consensus       191 ~gi~~l~~  198 (204)
T cd01878         191 EGLDELLE  198 (204)
T ss_pred             CCHHHHHH
Confidence            55544443

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.74  E-value=2.2e-16  Score=117.47  Aligned_cols=125  Identities=17%  Similarity=0.284  Sum_probs=81.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH--HHHHH-
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI-   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~-   93 (221)
                      ....+|+++|++|+|||||+|+|++...........+.|..+..+.  .  +..+.+|||||+.........  ....+ 
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V--NDGFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e--CCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence            5568999999999999999999998752111112333444444332  2  247899999998753322111  11111 


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++. ....++++++|+|++.+++..+...++.+...     ..|+++++||+|...
T Consensus        92 ~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~  143 (179)
T TIGR03598        92 EEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLK  143 (179)
T ss_pred             HHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence            12222 22356899999999878888887766666542     347999999999875

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=1.1e-16  Score=129.43  Aligned_cols=125  Identities=19%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+|+|.++||||||+|+|++....  ......+|..+....+.+..+..++++||||+.+.......+...+.+.+   
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi---  234 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI---  234 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh---
Confidence            5789999999999999999986532  22334567778877777745678999999999864443334444444443   


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ..++++++|+|+++.-+.++ ..|.+.+......-...|+++|+||+|+..
T Consensus       235 -e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        235 -ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             -hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence             44589999999985443344 455555655422112458999999999865

>cd01895 EngA2 EngA2 subfamily

Probab=99.74  E-value=1.6e-16  Score=117.01  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=83.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+.................
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4789999999999999999999876432221 223333443344444 66778999999998653222221111111222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ..+..+|++++|+|+.+..+.....++..+...     ..|+++++||+|+...
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-----GKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-----CCCEEEEEeccccCCc
Confidence            345678999999999877776665555444332     2479999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04124 RabL2 RabL2 subfamily

Probab=99.74  E-value=3.3e-17  Score=119.82  Aligned_cols=150  Identities=16%  Similarity=0.081  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||++++++...........+.+.  ........ ....+.+|||||...+.           ....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~   67 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQ-----------TMHA   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhh-----------hhhH
Confidence            3789999999999999999987765322211111111  11122220 23467799999965422           2334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR  177 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  177 (221)
                      ..+..+|++++|+|++++.+..+ ..|+..+++...   ..|+++|+||+|+.........++........+..++....
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  144 (161)
T cd04124          68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGT  144 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            56678899999999986655444 566666665422   34899999999975311111222322212233445555555


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      ++.+.++.
T Consensus       145 gv~~l~~~  152 (161)
T cd04124         145 NVVKLFQD  152 (161)
T ss_pred             CHHHHHHH
Confidence            55555443

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=1.2e-16  Score=134.54  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.+..   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            57999999999999999999988753232 2445666677777777 78899999999998622   2244555555666


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      ++..+|++++|+|+.++++..+....+++++.     ..|+++|+||+|.... .....++..-.....+..++....++
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~-~~~~~~~~~lg~~~~~~iSa~~g~gv  150 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDE-EADAYEFYSLGLGEPYPISAEHGRGI  150 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccc-hhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence            67788999999999988888888777777764     3489999999996541 23334443322223444444444444


Q ss_pred             HHHHH
Q 027618          180 QFEVD  184 (221)
Q Consensus       180 ~~~~~  184 (221)
                      .+.++
T Consensus       151 ~~l~~  155 (435)
T PRK00093        151 GDLLD  155 (435)
T ss_pred             HHHHH
Confidence            44444

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.73  E-value=9.5e-17  Score=117.75  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||+|++++.........  ..........+... ....+.+|||||...+           .....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLP--TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-----------LEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEECCeEEEEEEEECCccHHH-----------HHHHH
Confidence            3799999999999999999998875432211  11112222223221 2357889999996431           12334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhh
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK  171 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~  171 (221)
                      ..++.++++++|+|++++.+... ..|+..+.+....   ....|+++|+||+|....   .......+..+.....+..
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET  147 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence            45678899999999986544333 5666666665432   134589999999998631   1233334444322334445


Q ss_pred             hHHHHHhHHHHHH
Q 027618          172 GATKLRDQQFEVD  184 (221)
Q Consensus       172 ~~~~~~~~~~~~~  184 (221)
                      ++....++.+.++
T Consensus       148 Sa~~~~gi~~l~~  160 (168)
T cd04119         148 SACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCCCCHHHHHH
Confidence            5554444444444

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04163 Era Era subfamily

Probab=99.73  E-value=2.3e-16  Score=115.21  Aligned_cols=123  Identities=23%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|++++........ ....+.......... .+..+.++||||+.+.....   ...+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence            4789999999999999999999986533321 112233333333333 55788999999988643221   122333444


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+.+|++++|+++.+..+.....+.+.+...     ..|+++|+||+|+..
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~  125 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK  125 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence            556778999999999866666666666666543     237999999999873

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.73  E-value=1.9e-16  Score=128.98  Aligned_cols=157  Identities=21%  Similarity=0.175  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.+++|||||+|+|++......  ...+.|..+....+.++.+..+.++||||+...  ...+..+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence            347899999999999999999999874322  223445555556666646778999999998531  1222333343332


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                       ..+..+|++++|+|++++...... .+.+.+.+. +.. ..|+++|+||+|+..  ...+..... .....+..|+...
T Consensus       264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~--~~~v~~~~~-~~~~~i~iSAktg  337 (351)
T TIGR03156       264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLD--EPRIERLEE-GYPEAVFVSAKTG  337 (351)
T ss_pred             -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCC--hHhHHHHHh-CCCCEEEEEccCC
Confidence             345678999999999866554443 334445443 321 348999999999875  333332222 1122344555544


Q ss_pred             HhHHHHHH
Q 027618          177 RDQQFEVD  184 (221)
Q Consensus       177 ~~~~~~~~  184 (221)
                      .++.+.++
T Consensus       338 ~GI~eL~~  345 (351)
T TIGR03156       338 EGLDLLLE  345 (351)
T ss_pred             CCHHHHHH
Confidence            44444433

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.73  E-value=2.7e-16  Score=113.93  Aligned_cols=121  Identities=25%  Similarity=0.253  Sum_probs=82.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +.+|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.++||||+.+.....   .........
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~   75 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEI---EKIGIERAR   75 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchH---HHHHHHHHH
Confidence            368999999999999999999987643222 2234444444445555 67789999999998654321   111122223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+|++++|+|+.++.+..+...+..       ....|+++|+||+|+..
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~  121 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLP  121 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCC
Confidence            44567799999999997776666554433       12348999999999876

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01866 Rab2 Rab2 subfamily

Probab=99.72  E-value=2.7e-16  Score=115.82  Aligned_cols=119  Identities=16%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||++++++.........+.+.+.......... ....+.+|||||...           +.....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~   71 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQES-----------FRSITR   71 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcHH-----------HHHHHH
Confidence            37999999999999999999998765333222222222222222211 234788999999532           222334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|++++.+... ..|+..+++...  ...|+++|+||.|+..
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~  123 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES  123 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            55678899999999985444333 445555554422  2348999999999874

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.2e-16  Score=114.64  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=108.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +.-++|+|+|.+|+|||.|+-++.+..+.....++.++........+.. ....+.+|||.|..           +++..
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~g-k~iKlQIWDTAGQE-----------RFrti   74 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDG-KTIKLQIWDTAGQE-----------RFRTI   74 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecc-eEEEEEeeeccccH-----------HHhhh
Confidence            4458999999999999999999998887655544444443333333322 34579999999964           44466


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc-hhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK-PLKK  171 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~-~l~~  171 (221)
                      +...++++|+||+|+|+++.-+... ..|++.+.+.....  .|.++|+||+|+.+..   .+..++|....... .+..
T Consensus        75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET  152 (205)
T KOG0084|consen   75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET  152 (205)
T ss_pred             hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence            6678899999999999997666666 67888888764444  3899999999986431   34456666654344 4556


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |++.-.+..+.+..
T Consensus       153 SAK~~~NVe~~F~~  166 (205)
T KOG0084|consen  153 SAKDSTNVEDAFLT  166 (205)
T ss_pred             ccCCccCHHHHHHH
Confidence            66655555555544

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.72  E-value=2.4e-16  Score=128.46  Aligned_cols=136  Identities=24%  Similarity=0.284  Sum_probs=101.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.|++|||||+|+|+|......+ ...|+|.........+ +++.+.++||.|+-....-.+.+..--....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999999875554 4667888888888888 9999999999998753221111100000111


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY  160 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (221)
                      ..+...++++++|+|+.++++.++.+.+..+.+. |.    ++++|+||||....+....+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~  312 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEF  312 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHH
Confidence            2334566999999999999999999999988875 33    5999999999987433444444

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=5.7e-16  Score=127.67  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+|+|.++||||||+|+|++...  .......+|..+....+.+.....++|+||||+.........+...+.+.    
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~----  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH----  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence            689999999999999999998764  22234567777887777773345799999999986443333344444443    


Q ss_pred             cCCCcEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRS---R-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..++++++|+|+..   . .......+++.+......-...|.++|+||+|...
T Consensus       235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~  289 (390)
T PRK12298        235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD  289 (390)
T ss_pred             HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence            455699999999871   1 11222455555554322112358999999999875

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.71  E-value=2.4e-16  Score=115.85  Aligned_cols=148  Identities=18%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE--Ee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|++|||||||+++++........    ..|........  .. .....+.+|||||...+....          
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------   66 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR----------   66 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc----------
Confidence            37899999999999999999865532111    12222222222  11 023468899999976543221          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh-hhHHHHhcccCCchhhhhHH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~l~~~~~~~l~~~~~  174 (221)
                       ...+..+|++++|+|+++..+... ..++..+.+..+   ..|+++|+||+|+..... ....++........+..++.
T Consensus        67 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~  142 (166)
T cd00877          67 -DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAK  142 (166)
T ss_pred             -HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCC
Confidence             134567899999999986544443 456666666533   458999999999863221 12223333233345666666


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.++++.
T Consensus       143 ~~~~v~~~f~~  153 (166)
T cd00877         143 SNYNFEKPFLW  153 (166)
T ss_pred             CCCChHHHHHH
Confidence            66666666654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PTZ00369 Ras-like protein; Provisional

Probab=99.71  E-value=3.2e-16  Score=117.64  Aligned_cols=152  Identities=20%  Similarity=0.136  Sum_probs=91.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|.+|+|||||++++++.........+.+.+   ........ ....+.+|||||..++..           ..
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------l~   70 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS---YRKQCVIDEETCLLDILDTAGQEEYSA-----------MR   70 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE---EEEEEEECCEEEEEEEEeCCCCccchh-----------hH
Confidence            4899999999999999999999876532211111111   11122221 223577899999765321           22


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.++++++|+|++++-+... ..+++.+.+.... ...|+++|+||+|+....   .....++........+..++
T Consensus        71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sa  149 (189)
T PTZ00369         71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSA  149 (189)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeC
Confidence            235567899999999986554333 4556666554322 234899999999975421   11223333322233556666


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       150 k~~~gi~~~~~~  161 (189)
T PTZ00369        150 KQRVNVDEAFYE  161 (189)
T ss_pred             CCCCCHHHHHHH
Confidence            666667666665

>cd04171 SelB SelB subfamily

Probab=99.71  E-value=6.5e-16  Score=112.91  Aligned_cols=116  Identities=22%  Similarity=0.306  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .|+++|++|+|||||+|+|++....... ....+.|.........+..+..+.+|||||..+           +...+..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence            5899999999999999999985421111 112234545554555552267899999999642           1222334


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..+|++++|+|+++....+....+..+... +.   .|+++++||+|...
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~  118 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVD  118 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccC
Confidence            56678999999999865545554444444332 32   37999999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04122 Rab14 Rab14 subfamily

Probab=99.71  E-value=4.4e-16  Score=114.38  Aligned_cols=150  Identities=13%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.........+.+  .......+.. .+  ..+.+|||||...           +....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--VEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRAVT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccc--eeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            6899999999999999999998764322111111  1111122223 33  3678999999542           22223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.+|++++|+|++++-+... ..|+..+.....  ...|+++|+||+|+....   .....++..+.....+..++
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  146 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA  146 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence            445678899999999986544333 455555544322  234799999999986421   12334444332233444555


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.+..
T Consensus       147 ~~~~~i~e~f~~  158 (166)
T cd04122         147 KTGENVEDAFLE  158 (166)
T ss_pred             CCCCCHHHHHHH
Confidence            555555555443

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.71  E-value=3.8e-16  Score=118.34  Aligned_cols=153  Identities=11%  Similarity=0.049  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++........  ...........+.+.  ....+.+|||||...+.           ...
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~--~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-----------~~~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYK--ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-----------GMT   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-----------hhH
Confidence            378999999999999999999875422211  111111222233331  23467899999974321           223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC---ChhhHHHHhcccC-Cchhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED---NDETLEDYLGREC-PKPLK  170 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~-~~~l~  170 (221)
                      ...++.++++++|+|++++.+... ..|...+......  ....|+++|+||.|+...   ....+.++.+... ...+.
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  147 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE  147 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence            456678899999999986554444 4455555543221  234589999999998621   1345566665422 24555


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       148 ~Sak~~~~v~e~f~~  162 (201)
T cd04107         148 TSAKEGINIEEAMRF  162 (201)
T ss_pred             EeCCCCCCHHHHHHH
Confidence            666655566665554

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=1.3e-15  Score=126.38  Aligned_cols=157  Identities=20%  Similarity=0.159  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+|+|.++||||||+|+|++...-.  .....+|..+....+.+..+..++++||||+.........+...+.+.+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            78999999999999999999876321  2344567777777777733788999999999763333333444444443   


Q ss_pred             cCCCcEEEEEEeCCCC---CCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618          101 KDGIHAVLVVFSVRSR---FSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                       ..++++++|+|+++.   -.. ....+.+.|......-...|.+||+||+|+.. ....++++.+......+..|+..-
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-AEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-CHHHHHHHHHHhCCcEEEEeCCCC
Confidence             345999999999732   121 22455556655422223458999999999643 233344444321123344444444


Q ss_pred             HhHHHHHH
Q 027618          177 RDQQFEVD  184 (221)
Q Consensus       177 ~~~~~~~~  184 (221)
                      ..+.++++
T Consensus       313 eGI~eL~~  320 (424)
T PRK12297        313 QGLDELLY  320 (424)
T ss_pred             CCHHHHHH
Confidence            44444433

>cd04140 ARHI_like ARHI subfamily

Probab=99.71  E-value=2.4e-16  Score=115.66  Aligned_cols=153  Identities=18%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|+|||||++++++.........+.+ ........... ....+.++||||...+..           ....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQFPA-----------MQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcchH-----------HHHH
Confidence            6899999999999999999998765322211111 11122222222 335678999999865321           1123


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~~  174 (221)
                      .+..+|++++|++++++.+... ..+++.+++..+.. ...|+++|+||+|......   .....+........+..++.
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~  148 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK  148 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence            4567799999999986655544 56667777654422 3458999999999864211   12222332212234445665


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       149 ~g~~v~~~f~~  159 (165)
T cd04140         149 TNHNVQELFQE  159 (165)
T ss_pred             CCCCHHHHHHH
Confidence            55555555543

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=9.5e-16  Score=129.19  Aligned_cols=127  Identities=22%  Similarity=0.214  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.......+..........
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4689999999999999999999988754333 2345566665555555 7788999999998764433222221111222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+++.+|++++|+|+.++.+.++...+..+.+. +    .|+++++||+|+..
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~  298 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVD  298 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCC
Confidence            2355677999999999988998888777766553 2    37999999999874

>cd04120 Rab12 Rab12 subfamily

Probab=99.70  E-value=2.8e-16  Score=118.83  Aligned_cols=149  Identities=13%  Similarity=0.141  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .|+++|..|+|||||+++++...+....  ....+.......+.+ ++  ..+.+|||+|...+           .....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~--~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~-----------~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEAC--KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------NSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcC--CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHHHH
Confidence            5899999999999999999876642221  111222222233444 43  56789999996532           23334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-CCchhhhhH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-CPKPLKKGA  173 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~~~~l~~~~  173 (221)
                      .+++.+|++++|+|++++-+... ..|++.+.+....  ..|+++|+||+|+....   ....+++.++. ...++..|+
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA  145 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA  145 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence            56788899999999997666555 4566666554322  34899999999975321   12334444321 234566777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       146 ktg~gV~e~F~~  157 (202)
T cd04120         146 KDNFNVDEIFLK  157 (202)
T ss_pred             CCCCCHHHHHHH
Confidence            777777777765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.70  E-value=3.2e-16  Score=115.93  Aligned_cols=121  Identities=20%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 027618           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (221)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (221)
                      ++|++|||||||+|+|++.... .. ...+.|..+......+ . +..+.++||||+.+.....+.+...+.    ..+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-VA-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-cc-CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence            5899999999999999998641 11 2234455555555656 5 888999999998643222222222222    2345


Q ss_pred             CCcEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhcc-----cccccEEEEEecCCCCC
Q 027618          103 GIHAVLVVFSVRSRF-----S-QEE-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELE  151 (221)
Q Consensus       103 ~~~~il~v~~~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~  151 (221)
                      .+|++++|+|+.+..     . ..+ ..+...+......     ....|+++|+||+|+..
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~  134 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD  134 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence            579999999998552     2 222 3333344332111     12458999999999876

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.70  E-value=8.3e-16  Score=113.06  Aligned_cols=150  Identities=18%  Similarity=0.091  Sum_probs=88.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++.........+.  ........+.+ .+  ..+.+|||||...+           ...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~   68 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--GIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTI   68 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--cceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHH
Confidence            4799999999999999999999876532221111  12222223333 33  46789999995431           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++.+... ..|+..+.....  ...|+++|+||.|+....   .....++........+..+
T Consensus        69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  146 (167)
T cd01867          69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETS  146 (167)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            3345678899999999986544333 455555554322  234899999999987421   1223334332222334445


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       147 a~~~~~v~~~~~  158 (167)
T cd01867         147 AKANINVEEAFF  158 (167)
T ss_pred             CCCCCCHHHHHH
Confidence            544444444444

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.70  E-value=1.5e-15  Score=127.85  Aligned_cols=126  Identities=21%  Similarity=0.190  Sum_probs=90.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.......+.+........
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4578999999999999999999998643332 2344555555555555 7778999999999765433222221111222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ..+++.+|++++|+|+.++.+..+..++..+.+.     ..|+++|+||+|+.
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence            3456778999999999988998888777766553     23799999999987

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.69  E-value=1.6e-15  Score=127.02  Aligned_cols=123  Identities=18%  Similarity=0.173  Sum_probs=85.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++....+   ..-....
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie---~~gi~~~  276 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVE---RLGIEKS  276 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHH---HHHHHHH
Confidence            4589999999999999999999987643222 2345566666667777 788899999999875321111   1111222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|+|++++.+..+. ++..+..   .  ..|+++|+||+|+..
T Consensus       277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~~  324 (442)
T TIGR00450       277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---S--KKPFILVLNKIDLKI  324 (442)
T ss_pred             HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---C--CCCEEEEEECccCCC
Confidence            3455678999999999877766554 4444432   1  247999999999865

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01865 Rab3 Rab3 subfamily

Probab=99.69  E-value=5.9e-16  Score=113.61  Aligned_cols=150  Identities=11%  Similarity=0.056  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.........+  ............ ++  ..+.+|||||...+           ....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~-----------~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVFR-NDKRVKLQIWDTAGQERY-----------RTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence            68999999999999999999987652221111  111122222222 22  46889999996431           1223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.+|++++|+|.+++-+... ..|++.+.+....  ..|+++|+||+|+.....   ....++.....-..+..++
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA  145 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence            456788899999999985433332 4455555443222  347999999999864221   2222333221123444555


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       146 ~~~~gv~~l~~~  157 (165)
T cd01865         146 KENINVKQVFER  157 (165)
T ss_pred             CCCCCHHHHHHH
Confidence            544455554443

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.69  E-value=7e-16  Score=112.84  Aligned_cols=151  Identities=20%  Similarity=0.162  Sum_probs=89.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++.... ....+  .+.......... .+  ..+.+|||||..++.           ..
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDYDP--TIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCC-cccCC--CccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence            478999999999999999999987542 21111  111111222223 33  467889999976532           22


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....++.+|++++|+++++..+... ..++..+...... ...|+++++||+|+....   .....++........+..+
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  145 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETS  145 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEee
Confidence            2234566799999999986544333 4455555543222 234899999999976421   1233444433223445556


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       146 a~~~~~i~~l~~~  158 (164)
T cd04145         146 AKDRLNVDKAFHD  158 (164)
T ss_pred             CCCCCCHHHHHHH
Confidence            6555555555543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.69  E-value=4.9e-16  Score=114.08  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.......  ..+.+.......... .+  ..+.+|||||...+           ....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence            68999999999999999999987653221  112222222233333 33  36789999995431           1222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.+|++++|+|++++.+... ..|+..+......  ..|+++|+||.|......   .....+........+..++
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA  146 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence            345577899999999985443333 4455555543211  248999999999754211   2233343322223444555


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       147 ~~~~~v~~~~~~  158 (166)
T cd01869         147 KNATNVEQAFMT  158 (166)
T ss_pred             CCCcCHHHHHHH
Confidence            555555555543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04113 Rab4 Rab4 subfamily

Probab=99.69  E-value=4.8e-16  Score=113.50  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++..........  .+........... ....+.+|||||...+           .....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQERF-----------RSVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeeEEEEEEEECCEEEEEEEEECcchHHH-----------HHhHH
Confidence            37899999999999999999987653322111  1111222222221 2346789999996432           12223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++.+|++++|+|++++.+... ..++..++.....  ..|+++++||+|.....   ...+..+........+..++.
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL  145 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence            45577899999999986555443 4555555544322  34899999999986421   223344444322334445554


Q ss_pred             HHHhHHHHHH
Q 027618          175 KLRDQQFEVD  184 (221)
Q Consensus       175 ~~~~~~~~~~  184 (221)
                      ....+.+.++
T Consensus       146 ~~~~i~~~~~  155 (161)
T cd04113         146 TGENVEEAFL  155 (161)
T ss_pred             CCCCHHHHHH
Confidence            4444444443

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04127 Rab27A Rab27a subfamily

Probab=99.69  E-value=1.2e-15  Score=113.39  Aligned_cols=153  Identities=13%  Similarity=0.049  Sum_probs=90.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------CCceEEEEeCCCCCCCCCCch
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~   87 (221)
                      ..+|+++|++|+|||||++++++.........  ............+.           ....+.+|||||..       
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------   74 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------   74 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence            47899999999999999999988765322111  11111111122220           23568899999943       


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcc
Q 027618           88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR  163 (221)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~  163 (221)
                          ++.......+..+|++++|+|+++.-+..+ ..|+..+..... ....|+++|+||+|+....   .....++...
T Consensus        75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~  149 (180)
T cd04127          75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADK  149 (180)
T ss_pred             ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence                222334456678899999999985544444 455555554321 1234799999999986421   2234444443


Q ss_pred             cCCchhhhhHHHHHhHHHHHHh
Q 027618          164 ECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..-..+..++....++.+.++.
T Consensus       150 ~~~~~~e~Sak~~~~v~~l~~~  171 (180)
T cd04127         150 YGIPYFETSAATGTNVEKAVER  171 (180)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHH
Confidence            2223444555555555554443

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01863 Rab18 Rab18 subfamily

Probab=99.69  E-value=4.8e-16  Score=113.46  Aligned_cols=151  Identities=18%  Similarity=0.141  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++...........+.+..  .....+. ....+.+|||||...+.           ....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~   67 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFR-----------TLTS   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhh-----------hhhH
Confidence            37899999999999999999987653322222222222  2222221 23568899999965321           2223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGATK  175 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~~  175 (221)
                      ..++.+|++++|+|.++..+... ..++..+.+... ....|+++|+||+|.....  .....++.....-..+..++..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKT  146 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCC
Confidence            44577899999999985554444 345555655432 2345799999999987321  2233444443222344445444


Q ss_pred             HHhHHHHHH
Q 027618          176 LRDQQFEVD  184 (221)
Q Consensus       176 ~~~~~~~~~  184 (221)
                      ...+.+.++
T Consensus       147 ~~gi~~~~~  155 (161)
T cd01863         147 RDGVQQAFE  155 (161)
T ss_pred             CCCHHHHHH
Confidence            444444443

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=1.5e-15  Score=134.53  Aligned_cols=157  Identities=21%  Similarity=0.196  Sum_probs=109.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.+++|||||+|+|++....... ...+.|.........+ .+..+.+|||||+...   ...+...+...+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~  348 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEAD---VEGIDSAIASQA  348 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCC---CccHHHHHHHHH
Confidence            3478999999999999999999987643232 2456677776666677 7889999999998742   123445566666


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR  177 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  177 (221)
                      ..++..+|++++|+|+.+.++..+..+.+.++..     ..|+++|+||+|.... .....++........+..|+....
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~-~~~~~~~~~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS-EYDAAEFWKLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc-hhhHHHHHHcCCCCeEEEECCCCC
Confidence            6677888999999999888888888888877652     3489999999997642 222233332222233445555555


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      ++.++++.
T Consensus       423 GI~eLl~~  430 (712)
T PRK09518        423 GVGDLLDE  430 (712)
T ss_pred             CchHHHHH
Confidence            55555544

>cd04142 RRP22 RRP22 subfamily

Probab=99.69  E-value=8.5e-16  Score=116.06  Aligned_cols=160  Identities=14%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++.......  ....+.......+.+ .+  ..+.+|||||...+.....   .+.....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence            37899999999999999999987653221  111111222223333 44  4677999999875432211   1222223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCC---hhhHHHHhcc-cCCchhhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELEDN---DETLEDYLGR-ECPKPLKK  171 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~-~~~~~l~~  171 (221)
                      ..++..+|++++|+|++++-+... ..+.+.+.+... .....|+++|+||+|+....   .....++..+ ..-.++..
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  154 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC  154 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence            345578899999999986544443 445555555431 12235899999999985421   1223333332 12234556


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       155 Sak~g~~v~~lf~~  168 (198)
T cd04142         155 SAKYNWHILLLFKE  168 (198)
T ss_pred             cCCCCCCHHHHHHH
Confidence            66666666665555

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04121 Rab40 Rab40 subfamily

Probab=99.69  E-value=8.9e-16  Score=115.01  Aligned_cols=151  Identities=15%  Similarity=0.099  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|..|+|||||+.++.+...... . ....+.......+.. ++  ..+.+|||||...+           ..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~-~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESP-Y-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRF-----------CT   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-C-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HH
Confidence            348999999999999999999987543211 1 111222222233333 33  56789999996532           12


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~  171 (221)
                      .....++.+|++++|+|++++.+... ..|++.+.+...   ..|+++|+||.|+...   ..+..+++.+...-.++..
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~  147 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV  147 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence            33345678899999999997666555 567777766432   3489999999997532   1345566665444456667


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       148 SAk~g~~V~~~F~~  161 (189)
T cd04121         148 SPLCNFNITESFTE  161 (189)
T ss_pred             cCCCCCCHHHHHHH
Confidence            77777777776665

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=6.4e-15  Score=125.05  Aligned_cols=125  Identities=22%  Similarity=0.274  Sum_probs=88.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.......  ...+....+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence            4589999999999999999999998753222 2345555555555556 77888999999985421111  111222222


Q ss_pred             --HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..++..+|++++|+|++++.+..+..++..+.+.     ..|+++|+||+|+..
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~  336 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD  336 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence              2345788999999999988888887777666542     247999999999875

>cd04110 Rab35 Rab35 subfamily

Probab=99.69  E-value=7.3e-16  Score=116.64  Aligned_cols=151  Identities=17%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||++++++........  ...........+.+ .+  ..+.+|||||...+           ..
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~-----------~~   70 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGERVKLQIWDTAGQERF-----------RT   70 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence            35899999999999999999999876422211  11111222223333 23  46789999996432           12


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                      .....+..++++++|+|++++-+... ..|++.+.....   ..|+++|+||+|+....   ......+........+..
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  147 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET  147 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence            22345677899999999986544333 445555554322   34899999999986421   122333443322334555


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      ++....++.+.++.
T Consensus       148 Sa~~~~gi~~lf~~  161 (199)
T cd04110         148 SAKENINVEEMFNC  161 (199)
T ss_pred             ECCCCcCHHHHHHH
Confidence            55555555555554

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK11058 GTPase HflX; Provisional

Probab=99.69  E-value=1.6e-15  Score=126.31  Aligned_cols=125  Identities=21%  Similarity=0.115  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      +.|+++|.+|||||||+|+|++......  ...+.|..+....+.++....+.++||||+...  ...+.+..+... ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-LQ  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-HH
Confidence            6899999999999999999999876422  223445555555565634458899999999542  123344444443 34


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+|++++|+|++++....... +.+.+.+. +.. ..|+++|+||+|+..
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~-~~pvIiV~NKiDL~~  323 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH-EIPTLLVMNKIDMLD  323 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC-CCCEEEEEEcccCCC
Confidence            457889999999998665544433 33444443 321 348999999999875

>cd01864 Rab19 Rab19 subfamily

Probab=99.68  E-value=1.4e-15  Score=111.51  Aligned_cols=150  Identities=11%  Similarity=0.113  Sum_probs=89.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .++|+++|++|+|||||++++++........  ...........+.+ .+  ..+.+|||||...           +...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence            4899999999999999999998765432221  11122233333444 33  4688999999532           2222


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhccc-CCchhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRE-CPKPLKK  171 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~-~~~~l~~  171 (221)
                      ....++.+|++++|+|+++..+... ..|+..+.....  ...|+++|+||+|+.....   ....++.+.. ....+..
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  146 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLET  146 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEE
Confidence            3345577899999999986544333 566666665422  2348999999999865321   2233333321 1223445


Q ss_pred             hHHHHHhHHHHHH
Q 027618          172 GATKLRDQQFEVD  184 (221)
Q Consensus       172 ~~~~~~~~~~~~~  184 (221)
                      ++....++.+.++
T Consensus       147 Sa~~~~~v~~~~~  159 (165)
T cd01864         147 SAKESQNVEEAFL  159 (165)
T ss_pred             ECCCCCCHHHHHH
Confidence            5554445554444

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01850 CDC_Septin CDC/Septin

Probab=99.68  E-value=2.7e-15  Score=118.58  Aligned_cols=125  Identities=23%  Similarity=0.251  Sum_probs=83.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeE--EEEEEeeCC--ceEEEEeCCCCCCCCCCchH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCE--MQRTVLKDG--QVVNVIDTPGLFDFSAGSEF   88 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~--~~~~~~~~~--~~~~liDtPG~~~~~~~~~~   88 (221)
                      .++|+++|++|+|||||+|+|++.........      ....|....  ...... .+  ..+.+|||||+.++.. +..
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~-~~~   81 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNIN-NSD   81 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCcccccc-chh
Confidence            47999999999999999999999876544221      112232222  222333 34  4689999999987643 333


Q ss_pred             HHHHHHHHHHhh------------------cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618           89 VGKEIVKCIGMA------------------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (221)
Q Consensus        89 ~~~~~~~~~~~~------------------~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (221)
                      .++.+..++...                  -..+|+++|+++.. .++++.+...++.+.+      ..|+++|+||+|.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~  155 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT  155 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence            444444322211                  12578999999886 3577777777777754      2379999999999


Q ss_pred             CC
Q 027618          150 LE  151 (221)
Q Consensus       150 ~~  151 (221)
                      +.
T Consensus       156 l~  157 (276)
T cd01850         156 LT  157 (276)
T ss_pred             CC
Confidence            76

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04125 RabA_like RabA-like subfamily

Probab=99.68  E-value=6.8e-16  Score=115.75  Aligned_cols=151  Identities=15%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++.........+  .........+... ....+.+|||||...+           .....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-----------~~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKST--IGVDFKIKTVYIENKIIKLQIWDTNGQERF-----------RSLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCEEEEEEEEECCCcHHH-----------HhhHH
Confidence            47999999999999999999987653211111  1122222233331 1245779999995431           12334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..+..+|++++|+|.+++-+... ..|+..+....+.  ..|+++++||.|.....   ......+.....-..+..++.
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~  145 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK  145 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence            56678899999999986544333 3455555554322  24799999999976421   122233333211234455555


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ....+.+.++.
T Consensus       146 ~~~~i~~~f~~  156 (188)
T cd04125         146 QSINVEEAFIL  156 (188)
T ss_pred             CCCCHHHHHHH
Confidence            44555554444

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK04213 GTP-binding protein; Provisional

Probab=99.68  E-value=3.3e-15  Score=113.17  Aligned_cols=122  Identities=22%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH--
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK--   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~--   95 (221)
                      ...+|+++|.+|+|||||+|+|++.... .+ ...+.|....  ...+ .  .+.+|||||+...........+.+..  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4579999999999999999999987642 22 1223343332  2323 2  68899999986543333222233333  


Q ss_pred             --HHHhhcCCCcEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 --CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 --~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ++......++++++|+|.+....           ..+...+..+..   .  ..|+++|+||+|+..
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~p~iiv~NK~Dl~~  144 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---L--GIPPIVAVNKMDKIK  144 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---c--CCCeEEEEECccccC
Confidence              23333455689999998863211           122333333332   1  247999999999865

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.68  E-value=1.3e-15  Score=111.39  Aligned_cols=116  Identities=19%  Similarity=0.212  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.......  ....+.........+ .+  ..+.+|||||...           .....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            47999999999999999999987653221  112222222233333 33  4678999999532           11233


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|+|+.+..+... ..|+..+......  ..|+++++||+|...
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~  119 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLED  119 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence            345677899999999985444443 3455555544222  358999999999765

Rab GTPases are implicated in vesicle trafficking.

>cd01861 Rab6 Rab6 subfamily

Probab=99.68  E-value=9.5e-16  Score=111.84  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.......  ....+.........+ .+  ..+.+|||||...           ....+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~   66 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            37999999999999999999988764322  222233333333434 33  3588999999532           11233


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|++++++-+... ..++..+....+.  ..|+++++||+|...
T Consensus        67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~  119 (161)
T cd01861          67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD  119 (161)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence            345577899999999986544433 4555555443232  348999999999854

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.68  E-value=1.1e-15  Score=112.22  Aligned_cols=114  Identities=16%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ++|+++|++|+|||||+|+|++......  ...+.|.........+.  .+..+.++||||...+           ....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence            3689999999999999999998765322  22234444444444441  3678999999997431           1112


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ......+|++++|+++++.........+..+...     ..|+++|+||+|+..
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~  116 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPN  116 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccc
Confidence            2345677999999999866655555555555431     247999999999875

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04109 Rab28 Rab28 subfamily

Probab=99.68  E-value=5.9e-16  Score=118.53  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++.......  ....+.......+.+..  ...+.+|||||...+           ....
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-----------~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-----------GKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-----------HHHH
Confidence            37899999999999999999987642221  11112222222333322  357889999995421           1233


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~  172 (221)
                      ...+..+|++++|+|+++.-+... ..|+..+.+.... ....|+++|+||+|+.....   ....++.+...-..+..+
T Consensus        68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS  147 (215)
T cd04109          68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS  147 (215)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence            345678899999999986544444 4577777766443 22346899999999864211   233444443222344456


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +.....+.++++.
T Consensus       148 Aktg~gv~~lf~~  160 (215)
T cd04109         148 AKTGDRVNLLFQQ  160 (215)
T ss_pred             CCCCCCHHHHHHH
Confidence            5555566555554

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.68  E-value=2.4e-15  Score=121.60  Aligned_cols=125  Identities=22%  Similarity=0.216  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+++|.++||||||+|+|++.....  .....+|..+....+.+.....+.++||||+.+.......+...+.+.+   
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi---  233 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI---  233 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH---
Confidence            67999999999999999999875321  2233456777777777733488999999999764433333444444444   


Q ss_pred             cCCCcEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ..++++++|+|+++.   -...+ ..+.+.+......-...|+++|+||+|+..
T Consensus       234 -erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~  287 (329)
T TIGR02729       234 -ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD  287 (329)
T ss_pred             -HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence             345899999999843   11122 445555554322223458999999999875

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.68  E-value=1.3e-15  Score=116.92  Aligned_cols=152  Identities=13%  Similarity=0.039  Sum_probs=92.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ....+|+++|.+|+|||||+++++..........+.+.+...  ..+... ....+.+|||||...+.           .
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   77 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFG-----------G   77 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhhh-----------h
Confidence            556899999999999999999987665422211111112111  122221 23578899999976532           2


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~  172 (221)
                      .....++.++++++|+|++++.+... ..|++.+.+...   ..|+++|+||+|+....  ...+ .+.+...-.++..|
T Consensus        78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~S  153 (219)
T PLN03071         78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS  153 (219)
T ss_pred             hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcC
Confidence            22245678899999999996655444 466666665422   34899999999975321  1122 33333233455666


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.+..
T Consensus       154 Ak~~~~i~~~f~~  166 (219)
T PLN03071        154 AKSNYNFEKPFLY  166 (219)
T ss_pred             CCCCCCHHHHHHH
Confidence            6666666655554

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.68  E-value=9.9e-16  Score=112.13  Aligned_cols=150  Identities=18%  Similarity=0.146  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++....... .+.  +.......... .+  ..+.+|||||..++..           ..
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~~   65 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY-DPT--IEDSYRKQIEI-DGEVCLLDILDTAGQEEFSA-----------MR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccc-CCc--hhhhEEEEEEE-CCEEEEEEEEECCCcccchH-----------HH
Confidence            37999999999999999999987653221 111  11111122222 33  4677899999765321           12


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...+..++++++|++++++-+... ..+...+.+.... ...|+++|+||+|+....   .....++........+..++
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  144 (164)
T smart00173       66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSA  144 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeec
Confidence            234556799999999985544333 4445555544322 234899999999986421   12333444432233455555


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       145 ~~~~~i~~l~~~  156 (164)
T smart00173      145 KERVNVDEAFYD  156 (164)
T ss_pred             CCCCCHHHHHHH
Confidence            555555554443

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01868 Rab11_like Rab11-like

Probab=99.67  E-value=1.5e-15  Score=111.34  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++.......  ....+.......+.. .+  ..+.++||||...           ....
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~   68 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAI   68 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHH
Confidence            368999999999999999999987653222  122222222333333 33  3678999999542           1122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.++++++|+|+.+..+... ..|+..+.+....  ..|+++|+||.|+..
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~  122 (165)
T cd01868          69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRH  122 (165)
T ss_pred             HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            2345567899999999985544443 4555555554322  248999999999764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.67  E-value=8.3e-15  Score=110.42  Aligned_cols=125  Identities=17%  Similarity=0.260  Sum_probs=78.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++...........+.|.......    .+..+.+|||||+....... .....+...
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~-~~~~~~~~~   96 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSK-EEKEKWQKL   96 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCc-hHHHHHHHH
Confidence            3558899999999999999999998652212112233343333222    24689999999986532221 112222222


Q ss_pred             HH---hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~---~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.   .....++++++|++...+.+..+..+.+.+...     ..|+++++||+|...
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~  149 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLK  149 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCC
Confidence            22   223445788888988867776665555555432     236899999999876

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.67  E-value=1.7e-15  Score=110.79  Aligned_cols=118  Identities=19%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...           .......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQER-----------YRSLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHH-----------HHHHHHH
Confidence            6899999999999999999998876432211212111111222221 234688999999532           1122234


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..+|++++|+|+++.-+... ..++..+.....  ...|+++++||.|...
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  120 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES  120 (163)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            5567899999999984433322 556666665532  2347999999999763

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00154 Rab Rab family

Probab=99.67  E-value=1.4e-15  Score=110.12  Aligned_cols=117  Identities=20%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|+|||||+|.+++...........+.+.......... ....+.++|+||...           .......
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-----------~~~~~~~   68 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQER-----------FRSITPS   68 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHH-----------HHHHHHH
Confidence            3799999999999999999998876443222222222221112111 235688999999642           2223345


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .++.+|++++|++++++-+... ..++..+.....  ...|+++++||+|..
T Consensus        69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  118 (159)
T cd00154          69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE  118 (159)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence            5677899999999985332222 445555555421  234899999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.67  E-value=3.2e-15  Score=110.28  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++........  ...........+.+ .+  ..+.+|||||..++.       .   ..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~---~~   68 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------K---SM   68 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------H---hh
Confidence            3789999999999999999998766432211  11111222223333 33  578899999964311       1   12


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.+|++++|+|++++-+... ..|++.+..... ....|+++|+||+|+..
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE  123 (170)
T ss_pred             HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence            3345678899999999986555544 455555555422 22358999999999764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04154 Arl2 Arl2 subfamily

Probab=99.67  E-value=1.7e-15  Score=112.08  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +.....+|+++|++|+|||||++++++......     ..|.........+ .+..+.+|||||...+           .
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~~-----------~   72 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKTL-----------R   72 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------H
Confidence            334558999999999999999999998743211     1122223334444 5778899999996531           1


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcc-----cCCc
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR-----ECPK  167 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~-----~~~~  167 (221)
                      ......+..+|++++|+|+.++.+... ..++..+... ......|+++|+||+|+... ....+.+++..     ....
T Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (173)
T cd04154          73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWR  151 (173)
T ss_pred             HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceE
Confidence            223345678899999999985533332 2333333221 11124589999999998642 12445555531     1123


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      .+..|+....++.+.++.
T Consensus       152 ~~~~Sa~~g~gi~~l~~~  169 (173)
T cd04154         152 IQPCSAVTGEGLLQGIDW  169 (173)
T ss_pred             EEeccCCCCcCHHHHHHH
Confidence            455666666666655543

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04136 Rap_like Rap-like subfamily

Probab=99.67  E-value=1.3e-15  Score=111.35  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|||||||++++++....... .+  .+.......... .+  ..+.+|||||...+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY-DP--TIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc-CC--chhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence            68999999999999999999976543221 11  111111222333 33  456789999976532           122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...++.+|++++|+++++..+... ..+++.+.+.... ...|+++|+||+|...
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  120 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED  120 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            234567899999999986544443 4555666554222 2358999999999754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04112 Rab26 Rab26 subfamily

Probab=99.67  E-value=3.3e-15  Score=112.33  Aligned_cols=152  Identities=13%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++........ ..............+. ....+.||||||...           +.....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   68 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSVTH   68 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence            379999999999999999998876532211 1111111111112220 224688999999532           222233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++.+|++++|+|++++.+... ..|+..+.+....  ..|+++|+||.|+....   ......+........+..++.
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~  146 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK  146 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            45677899999999986544433 5566666665332  34899999999985321   122333333222234455555


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.+..
T Consensus       147 ~~~~v~~l~~~  157 (191)
T cd04112         147 TGLNVELAFTA  157 (191)
T ss_pred             CCCCHHHHHHH
Confidence            55555554444

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.67  E-value=4e-15  Score=114.00  Aligned_cols=153  Identities=14%  Similarity=0.102  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+|+++|++|+|||||++++++.........+  .........+.+. ....+.+|||||...           +...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t--~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~   77 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST--IGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI   77 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence            4589999999999999999999987653222111  1112222233331 224788999999542           2233


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....++.++++++|+|+++..+... ..|+..+......  ..|+++|+||+|+....   ......+........+..+
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S  155 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS  155 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            3455678899999999986554444 4566666654332  34899999999975321   1222333222222344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +.....+.+.++.
T Consensus       156 A~~g~~v~~lf~~  168 (216)
T PLN03110        156 ALEATNVEKAFQT  168 (216)
T ss_pred             CCCCCCHHHHHHH
Confidence            5544455554444

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.66  E-value=1.2e-15  Score=113.75  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +...+|+++|.+|+|||||+++++........ .+   |.... ...+... ....+.+|||+|...+.           
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~-~p---T~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~-----------   67 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP---TVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------   67 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCcc-CC---ceeeeeEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence            34589999999999999999999877653221 11   11111 1122221 23468899999964321           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ......++.+|++++|+|++++.+...  ..|++.+++...   ..|+++|+||.|+.
T Consensus        68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~  122 (182)
T cd04172          68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  122 (182)
T ss_pred             hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence            223356788999999999997766655  467777777532   34899999999974

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.66  E-value=2.2e-15  Score=109.97  Aligned_cols=115  Identities=22%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      +|+++|++|+|||||++++++.......  ..............+.   ....+.+|||||..+           .....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence            6899999999999999999987543211  1111112112222221   245788999999532           12223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+++.+|++++|++++++-+... ..|+..+....   ...|+++|+||.|+..
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~  120 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD  120 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence            445678899999999985443333 34555554432   2348999999999865

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04144 Ras2 Ras2 subfamily

Probab=99.66  E-value=1.2e-15  Score=114.53  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|.+|+|||||++++++....... .+.  +.......... .+.  .+.+|||||...+.           ....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETY-DPT--IEDSYRKQVVV-DGQPCMLEVLDTAGQEEYT-----------ALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC-CCc--hHhhEEEEEEE-CCEEEEEEEEECCCchhhH-----------HHHH
Confidence            4899999999999999999876542211 111  11111112223 333  47889999965321           1222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..++.+|++++|+|+++..+... ..+++.+.+.... ....|+++|+||+|+.....   ....++........+..++
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  145 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASA  145 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecC
Confidence            45567799999999986554444 5666666655331 13458999999999853211   1223333322223455566


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       146 k~~~~v~~l~~~  157 (190)
T cd04144         146 KTNVNVERAFYT  157 (190)
T ss_pred             CCCCCHHHHHHH
Confidence            655566655554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.66  E-value=2e-15  Score=111.58  Aligned_cols=150  Identities=15%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|..|+|||||++.+.+...........+   ......+.. .+  ..+.+|||||...+.           ...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~l~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE---DAYKQQARI-DNEPALLDILDTAGQAEFT-----------AMR   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc---ceEEEEEEE-CCEEEEEEEEeCCCchhhH-----------HHh
Confidence            6899999999999999999987765322111111   111112333 33  467899999975421           223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..++..+|++++|++++++.+... ..|.+.+.+... ....|+++|+||+|+....   .....++.++....++..++
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa  146 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSA  146 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEec
Confidence            345677899999999997777666 345555655422 2235899999999975421   12333343322234555666


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       147 ~~~~~v~~~f~~  158 (172)
T cd04141         147 ALRHYIDDAFHG  158 (172)
T ss_pred             CCCCCHHHHHHH
Confidence            666666666665

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04131 Rnd Rnd subfamily

Probab=99.66  E-value=1.6e-15  Score=112.74  Aligned_cols=113  Identities=15%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++....... .+   |.... ...+... ....+.+|||||...+.           ...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~-----------~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETY-VP---TVFENYTASFEIDEQRIELSLWDTSGSPYYD-----------NVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCc-CC---ceEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hcc
Confidence            57999999999999999999987653221 11   11111 1122231 23467899999965322           122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ...++.+|++++|+|++++-+...  ..|+..+++..+   ..|+++|+||.|+.
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~  118 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR  118 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence            346788899999999987766665  467777776532   34899999999974

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.66  E-value=2.1e-15  Score=113.94  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc---ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|++|+|||||+|+|+|...+..+....+.   |....  .+..+....+.+|||||+.+.....+.    +...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDD----YLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence            67999999999999999999996654333222221   21111  111112357899999999865433222    2221


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..+..+|++++|.  +.+++..+..+++.+++. +    .|+++|+||+|+..
T Consensus        76 --~~~~~~d~~l~v~--~~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~  121 (197)
T cd04104          76 --MKFSEYDFFIIIS--STRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL  121 (197)
T ss_pred             --hCccCcCEEEEEe--CCCCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence              2346678888874  347888999999988875 3    36899999999875

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.66  E-value=1.4e-15  Score=112.17  Aligned_cols=117  Identities=21%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      +|+++|.+|+|||||++++++........ + .............. ....+.+|||||...+           ......
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~~   68 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYK-A-TIGVDFEMERFEILGVPFSLQLWDTAGQERF-----------KCIAST   68 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCC-C-ceeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------HhhHHH
Confidence            68999999999999999999876532211 1 11112221222221 2346889999996532           123345


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++.+|++++|+|++++.+... ..|++.+.+.... ...|+++|+||.|+..
T Consensus        69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~  120 (170)
T cd04108          69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS  120 (170)
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence            5778899999999985433332 4566555443222 2247899999999754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=4e-15  Score=125.02  Aligned_cols=124  Identities=18%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+|+|.++||||||+|+|++.....  .....+|..+....+.+ .+..++|+||||+.+.......+..++.+.+   
T Consensus       161 dV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi---  234 (500)
T PRK12296        161 DVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI---  234 (500)
T ss_pred             eEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH---
Confidence            68999999999999999999875422  23345677777777777 7788999999999754333333444444443   


Q ss_pred             cCCCcEEEEEEeCCCCC----CHHH-HHHHHHHHHHhc---------ccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRF----SQEE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~----~~~~-~~~~~~l~~~~~---------~~~~~~~ivv~tk~D~~~  151 (221)
                       ..++++++|+|+++..    ...+ ..+.+.|.....         .-...|.+||+||+|...
T Consensus       235 -eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d  298 (500)
T PRK12296        235 -ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD  298 (500)
T ss_pred             -HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence             4459999999987311    1112 223334433321         112458999999999864

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.66  E-value=3.2e-15  Score=112.39  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=84.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      ..+|+++|+.++|||||+++|++.....              ......+.|.........+ .+..+.++||||+.+   
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence            3789999999999999999998642100              0011345566555555555 677899999999742   


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                              +...+...+..+|++++|+|+......++...+..+.+. +.   +++++++||+|+..
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~  132 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVD  132 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCC
Confidence                    333334555678999999999878888888888877664 32   24789999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.66  E-value=2e-15  Score=113.00  Aligned_cols=148  Identities=14%  Similarity=0.101  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|++|+|||||++++++........    .|.... ...+...  ....+.+|||||...+           ...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~----~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYV----PTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----------DRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCC----CeeeeeeEEEEEecCCcEEEEEEEECCCchhH-----------HHH
Confidence            379999999999999999999876532211    121111 1122221  2236789999995432           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCC-------hhhHHHHhcccCC-
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELEDN-------DETLEDYLGRECP-  166 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-------~~~~~~~l~~~~~-  166 (221)
                      ....+..+|++++|+|++++.+....  .|+..+... ..  ..|+++|+||.|+....       .....++...... 
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~  142 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAF  142 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCc
Confidence            23456788999999999865554442  355545432 22  34899999999975421       2233444432222 


Q ss_pred             chhhhhHHHHHhHHHHHHh
Q 027618          167 KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..+..++.....+.+.+..
T Consensus       143 ~~~e~Sa~~~~~v~~~f~~  161 (187)
T cd04132         143 AYLECSAKTMENVEEVFDT  161 (187)
T ss_pred             EEEEccCCCCCCHHHHHHH
Confidence            4455666555555555554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.66  E-value=3.8e-15  Score=121.79  Aligned_cols=124  Identities=25%  Similarity=0.278  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+.+++++|+|++|||||+|+|++....... ...|+|+......+.. +|.++.++||.|+-++...-+.   .=..-
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~---iGIeR  289 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVER---IGIER  289 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHH---HHHHH
Confidence            35689999999999999999999999875553 5678899999899888 9999999999999875433332   22222


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+.....+|.+|+|+|++...+..+...++.+      ....|+++|.||.|+..
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~  338 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVS  338 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhccc
Confidence            33445677999999999977777777776611      22347999999999886

>cd04133 Rop_like Rop subfamily

Probab=99.66  E-value=3.9e-15  Score=110.32  Aligned_cols=149  Identities=15%  Similarity=0.083  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||+.+++..........+.+...   ...+... ....+.+|||+|...+....           .
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~~~~-----------~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYNRLR-----------P   67 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCccccccc-----------h
Confidence            5799999999999999999997665322111111111   1122221 23568899999987654322           2


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCC-------------hhhHHHHhcc
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-------------DETLEDYLGR  163 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-------------~~~~~~~l~~  163 (221)
                      ..++.++++++|+|++++-+...  ..|+..++...+   ..|+++|+||+|+.+..             .....++.+.
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~  144 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ  144 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence            46688899999999997777666  367877766532   35899999999975411             1223344432


Q ss_pred             cCC-chhhhhHHHHHhHHHHHHh
Q 027618          164 ECP-KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       164 ~~~-~~l~~~~~~~~~~~~~~~~  185 (221)
                      ... .++..++....++.+.++.
T Consensus       145 ~~~~~~~E~SAk~~~nV~~~F~~  167 (176)
T cd04133         145 IGAAAYIECSSKTQQNVKAVFDA  167 (176)
T ss_pred             cCCCEEEECCCCcccCHHHHHHH
Confidence            222 3455666666666666554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.66  E-value=4.3e-15  Score=110.93  Aligned_cols=152  Identities=14%  Similarity=0.077  Sum_probs=88.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++...... ..+.+.+.  ....+..  ..+..+.+|||||...+           ...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEKL-----------RPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHhH-----------HHH
Confidence            37899999999999999999987664322 11111111  1112211  13467899999996421           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcccC------Cch
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGREC------PKP  168 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~~------~~~  168 (221)
                      +..++..+|++++|+|+++.-+... ..++..+.+.... ...|+++|+||+|.... ....++.++.-..      ...
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEE
Confidence            3345677899999999885433222 2344444433222 23589999999997642 1233444443100      113


Q ss_pred             hhhhHHHHHhHHHHHHh
Q 027618          169 LKKGATKLRDQQFEVDS  185 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~~  185 (221)
                      +..++....++.+.++.
T Consensus       148 ~~~SA~~~~gi~~l~~~  164 (183)
T cd04152         148 QPACAIIGEGLQEGLEK  164 (183)
T ss_pred             EEeecccCCCHHHHHHH
Confidence            44666666667666665

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.66  E-value=3.5e-15  Score=108.74  Aligned_cols=150  Identities=18%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||+|++++....... .+.  ........... .+  ..+.+|||||...+.           ...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPT--IEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCc-CCc--chheEEEEEEE-CCEEEEEEEEECCCCcchH-----------HHH
Confidence            58999999999999999999987643221 111  11111222233 33  346789999965421           222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ...+..++++++|++++++-+... ..++..+.+.... ...|+++|+||+|.....  .....++........+..++.
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK  145 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence            235566799999999985444333 3455555544222 234899999999986421  122333333222233445555


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       146 ~~~gi~~l~~~  156 (162)
T cd04138         146 TRQGVEEAFYT  156 (162)
T ss_pred             CCCCHHHHHHH
Confidence            55555554443

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04117 Rab15 Rab15 subfamily

Probab=99.65  E-value=2e-15  Score=110.42  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|++|+|||||++.+++.........  ..........+.. .+  ..+.+|||||...+.           ....
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~~   67 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHIS--TIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQ-----------TITK   67 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHH-----------hhHH
Confidence            689999999999999999987765322111  1111222223333 33  467899999964321           2233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      .++..+|++++|+|++++-+... ..|++.+.....  ...|+++|.||.|+....   ......+.+.....++..++.
T Consensus        68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  145 (161)
T cd04117          68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC  145 (161)
T ss_pred             HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            45678899999999986544444 455555554422  234899999999975422   122233332222234445555


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      .-.++.+.+..
T Consensus       146 ~~~~v~~~f~~  156 (161)
T cd04117         146 TNSNIKESFTR  156 (161)
T ss_pred             CCCCHHHHHHH
Confidence            54555554443

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.65  E-value=1.9e-15  Score=113.03  Aligned_cols=114  Identities=19%  Similarity=0.178  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (221)
                      +|+++|.+|+|||||+|+|++........              ...+.+.........+ .+..+.++||||..++    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            48999999999999999999876543221              0123344444455555 6778999999997532    


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                             ......+++.+|++++|+|+.+.........+..+..     ...|+++|+||+|+..
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~  128 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG  128 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence                   1222334456799999999987777666666665554     2348999999999885

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04123 Rab21 Rab21 subfamily

Probab=99.65  E-value=3.5e-15  Score=108.74  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||+|++++.......  ....+.........+. ....+.+|||||...+           .....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-----------HALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH-----------HHhhH
Confidence            37899999999999999999987653221  1111122222223221 2236889999995421           12223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|.++.-+... ..+++.+......  ..|+++++||+|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            34567899999999985544333 3455555554332  348999999999874

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.65  E-value=2.6e-15  Score=110.67  Aligned_cols=151  Identities=13%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||+|++++..........  ...........+ .+  ..+.+|||||...+           ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCc--cceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence            37999999999999999999987653222111  111222223333 33  34679999996432           1222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC---hhhHHHHhcccC-Cchhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN---DETLEDYLGREC-PKPLK  170 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~-~~~l~  170 (221)
                      ...++.+|++++|+|++++.+... ..|.+.+......  ....|+++|+||+|...+.   ......+.+... ...+.
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  146 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE  146 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence            345677899999999985544333 2344443333221  1234899999999987321   233444554321 23444


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++....++.+.++
T Consensus       147 ~Sa~~~~gv~~l~~  160 (172)
T cd01862         147 TSAKEAINVEQAFE  160 (172)
T ss_pred             EECCCCCCHHHHHH
Confidence            45544444444444

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.65  E-value=3.2e-15  Score=112.69  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=78.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc-ccccc-------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      .++|+++|.+++|||||++++++.. .+...             ....+.+.......+.+ .+..+.+|||||..++  
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~--   78 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADF--   78 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHH--
Confidence            3789999999999999999998631 11111             01133444445455666 7788999999997642  


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               ...+..+++.+|++++|+|+.+........++..+..   .  ..|+++|+||+|+..
T Consensus        79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~  131 (194)
T cd01891          79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPD  131 (194)
T ss_pred             ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCC
Confidence                     1233345667799999999986555544444444332   1  237899999999864

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.65  E-value=3e-15  Score=125.96  Aligned_cols=122  Identities=25%  Similarity=0.286  Sum_probs=83.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.++||||+.++...   +...-....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~---ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDE---VEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccH---HHHHHHHHH
Confidence            3479999999999999999999997642222 2344565555556666 7888999999998753211   111111122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|+|++++.+..+...+..       ....|+++|+||+|+..
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~  335 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTG  335 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccc
Confidence            234567899999999987766655433322       11248999999999875

>cd04126 Rab20 Rab20 subfamily

Probab=99.65  E-value=6.7e-15  Score=112.62  Aligned_cols=113  Identities=24%  Similarity=0.167  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|.+|+|||||++++++..+...     ..|.........+ ....+.+|||||...+..           ....
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~-----------l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFHG-----------LGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccchh-----------hHHH
Confidence            3789999999999999999998775321     1222223333334 456789999999764321           1223


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++.+|++++|+|++++.+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence            4678899999999997665555 3445555443222  348999999999754

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04116 Rab9 Rab9 subfamily

Probab=99.65  E-value=5.1e-15  Score=109.08  Aligned_cols=154  Identities=15%  Similarity=0.077  Sum_probs=92.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||++++++.........  ..........+.+ .+  ..+.+|||||...           ...
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~   69 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS   69 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence            348999999999999999999997665332211  1111211222333 33  3577899999542           222


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhcccC-Cchh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLGREC-PKPL  169 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~-~~~l  169 (221)
                      .....++.+|++++|++++++-+... ..|...+......  ....|+++|+||.|+....  ...++++.++.. ...+
T Consensus        70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEE
Confidence            33345678899999999986544333 4455555544321  1234899999999975321  244566665422 2345


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.++++.
T Consensus       150 e~Sa~~~~~v~~~~~~  165 (170)
T cd04116         150 ETSAKDATNVAAAFEE  165 (170)
T ss_pred             EEECCCCCCHHHHHHH
Confidence            5566555555555543

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=3e-15  Score=117.96  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc----------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      .|+++|++++|||||+++|+......                ......+.|.........| .+..+.++||||+.++. 
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~-   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT-   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence            47999999999999999997432110                0112346677777778888 88999999999976522 


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                                ..+..++..+|++++|+|+.+.....+...++.+.+. +    .|+++++||+|+...
T Consensus        79 ----------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a  131 (270)
T cd01886          79 ----------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA  131 (270)
T ss_pred             ----------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence                      2233455666999999999878888887777776653 2    378999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.65  E-value=1e-14  Score=112.81  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||+|+|++......  .....|..+....+.+ .+..+.++||||+.+..........++    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            689999999999999999999764222  2334455565666666 788999999999875432222222222    334


Q ss_pred             cCCCcEEEEEEeCCC
Q 027618          101 KDGIHAVLVVFSVRS  115 (221)
Q Consensus       101 ~~~~~~il~v~~~~~  115 (221)
                      ++.+|++++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            567799999999863

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04118 Rab24 Rab24 subfamily

Probab=99.65  E-value=3.3e-15  Score=112.39  Aligned_cols=114  Identities=20%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee--EEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .+|+++|++|+|||||++++++........   ..|...  ....+.. .+  ..+.+|||||...+.           .
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~   65 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A   65 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence            379999999999999999999876532111   112211  1122333 33  346699999975422           1


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+..+|++++|+|+++..+... ..|++.++.. .  ...|+++|+||+|+..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~  119 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIE  119 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccc
Confidence            12235567899999999985544333 4566666553 1  1348999999999764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04111 Rab39 Rab39 subfamily

Probab=99.65  E-value=5.3e-15  Score=112.87  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=90.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++.......  ............+....  ...+.+|||||...+           ...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-----------RSI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-----------HHH
Confidence            378999999999999999999987653221  11111222222232212  246889999996431           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++-+... ..|++.+.+.... ...++++|+||.|+....   ......+.+.....++..+
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  147 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETS  147 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEe
Confidence            2345677899999999986544443 4555555554332 234688999999976421   2233444443222344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       148 ak~g~~v~e~f~~  160 (211)
T cd04111         148 ARTGDNVEEAFEL  160 (211)
T ss_pred             CCCCCCHHHHHHH
Confidence            5555555555544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.64  E-value=9.4e-15  Score=111.47  Aligned_cols=151  Identities=15%  Similarity=0.118  Sum_probs=89.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||++++++.........+.+.+.  ....+.+ .+  ..+.+|||||...+           ...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~--~~~~i~~-~~~~i~l~l~Dt~G~~~~-----------~~~   71 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITI-DNKPIKLQIWDTAGQESF-----------RSI   71 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE--EEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHH
Confidence            47999999999999999999998765332211111111  1122223 33  35779999995421           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|+++.-+... ..|+..+.....  ...|+++|+||+|+....   ....+++.++.....+..+
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  149 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS  149 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            2344567899999999985444333 355555544322  234899999999976421   2334455543223344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +..-..+.+.++.
T Consensus       150 a~~~~~v~e~f~~  162 (210)
T PLN03108        150 AKTAQNVEEAFIK  162 (210)
T ss_pred             CCCCCCHHHHHHH
Confidence            5555555555554

>cd04175 Rap1 Rap1 subgroup

Probab=99.64  E-value=2.6e-15  Score=110.03  Aligned_cols=149  Identities=14%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||+++++....... ..  +.+.......... .  ...+.+|||||...+.           ...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YD--PTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFT-----------AMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcc-cC--CcchheEEEEEEE-CCEEEEEEEEECCCcccch-----------hHH
Confidence            6899999999999999999986543211 11  1111111122333 3  3356789999976432           222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...+..+|++++|++.++.-+... ..++..+.+... ....|+++|+||+|+.....   ....++.++.....+..++
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSA  145 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeC
Confidence            235567799999999885544433 455555554322 22348999999999864211   2223333322223444555


Q ss_pred             HHHHhHHHHHH
Q 027618          174 TKLRDQQFEVD  184 (221)
Q Consensus       174 ~~~~~~~~~~~  184 (221)
                      .....+.+.+.
T Consensus       146 ~~~~~v~~~~~  156 (164)
T cd04175         146 KAKINVNEIFY  156 (164)
T ss_pred             CCCCCHHHHHH
Confidence            54444444444

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.64  E-value=2.9e-15  Score=112.35  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=86.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEE--eeCCceEEEEeCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGL   79 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~   79 (221)
                      +.++|+++|+.++|||||+++|++.......                ....+.|.........  + .+..++++||||.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence            3589999999999999999999866532110                1123455555555555  5 8899999999996


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+           +...+......+|++++|+|+.+.........+..+...     ..|+++++||+|+..
T Consensus        81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~~  136 (188)
T PF00009_consen   81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLIE  136 (188)
T ss_dssp             HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSSH
T ss_pred             cc-----------eeecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccchh
Confidence            43           223333456778999999999988998888888887664     236999999999883

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.64  E-value=7.3e-15  Score=107.52  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|++|+|||||++++.+.. .+.....+ .............  .....+.+|||||...           ....
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~   68 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-TTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSDM   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-ceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHHH
Confidence            378999999999999999998542 22221111 1111111122222  1335788999999532           1122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..+|++++|+|+++..+... ..|++.+....   ...|+++|+||+|+..
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD  121 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            3345677899999999985543332 45555555432   2358999999999864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.64  E-value=2.2e-14  Score=105.24  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      |+++|++|+|||||++++++.........    |.......+.+ .+..+.+|||||...+.           ......+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVP----TTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccc----cCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence            78999999999999999998754322111    11122233444 67789999999976432           2223456


Q ss_pred             CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.+|++++|+|.+++.+... +.++..+..   .....|+++|+||.|+..
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~  113 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPA  113 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcC
Confidence            77899999999985543322 333333322   223458999999999764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.64  E-value=4.5e-15  Score=108.97  Aligned_cols=129  Identities=14%  Similarity=0.063  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc--cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|++|+|||||+|++++......+  .....+|.......+.+ .+..+.+|||||...+           .....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence            4799999999999999999875432111  11123344444455666 6789999999997542           12233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhc
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLG  162 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~  162 (221)
                      ..+..+|++++|+|+.+..+... ..++..+.+... ....|+++++||+|..... ...+.+++.
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~~~~~~~~~~~~  133 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDALSVEEIKEVFQ  133 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccCCCHHHHHHHhc
Confidence            45678899999999874322221 223333222111 1234899999999976521 123444444

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN03118 Rab family protein; Provisional

Probab=99.63  E-value=1.1e-14  Score=111.29  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=88.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      ++.....+|+++|++|+|||||++++++....  ...+ ..........+.+. ....+.+|||||...+.         
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------   76 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLAP-TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR---------   76 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcCC-CceeEEEEEEEEECCEEEEEEEEECCCchhhH---------
Confidence            33445689999999999999999999987642  1111 11112222233331 12467899999975432         


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCc
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPK  167 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~  167 (221)
                        ......++.+|++++|+|.+++.+....  .|...+.. +......|+++|+||+|+.....   ....++.......
T Consensus        77 --~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~  153 (211)
T PLN03118         77 --TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL  153 (211)
T ss_pred             --HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE
Confidence              1123455677999999999865444432  23333332 22222347899999999764211   2222333322223


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      ++..++.....+.+.++.
T Consensus       154 ~~e~SAk~~~~v~~l~~~  171 (211)
T PLN03118        154 FLECSAKTRENVEQCFEE  171 (211)
T ss_pred             EEEEeCCCCCCHHHHHHH
Confidence            344555555555555544

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.63  E-value=8.2e-15  Score=112.84  Aligned_cols=151  Identities=13%  Similarity=0.008  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+|+++|.+|+|||||++.+++..+......+.+..  . ...+.. .....+.+|||+|...+           ...
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--~-~~~i~~~~~~v~l~iwDTaG~e~~-----------~~~   77 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--Y-TAGLETEEQRVELSLWDTSGSPYY-----------DNV   77 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--e-EEEEEECCEEEEEEEEeCCCchhh-----------HHH
Confidence            34789999999999999999998776532211111111  1 111222 02346889999995432           123


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCC---------------ChhhHHH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED---------------NDETLED  159 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---------------~~~~~~~  159 (221)
                      ...+++.+|++++|+|++++-+...  ..|+..+.+...   ..|+++|+||+|+...               ..+..++
T Consensus        78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~  154 (232)
T cd04174          78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA  154 (232)
T ss_pred             HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence            3456788999999999997766654  467777776532   2489999999997431               0123445


Q ss_pred             HhcccCC-chhhhhHHHHH-hHHHHHHh
Q 027618          160 YLGRECP-KPLKKGATKLR-DQQFEVDS  185 (221)
Q Consensus       160 ~l~~~~~-~~l~~~~~~~~-~~~~~~~~  185 (221)
                      +.++..- .++..|+.... .+.+.+..
T Consensus       155 ~a~~~~~~~~~EtSAktg~~~V~e~F~~  182 (232)
T cd04174         155 LAKQLGAEVYLECSAFTSEKSIHSIFRS  182 (232)
T ss_pred             HHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence            5543222 35566666654 46666654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=8.7e-15  Score=106.12  Aligned_cols=124  Identities=13%  Similarity=0.090  Sum_probs=91.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +....+|+++|..++||||||++.+-..+...-..+.|..-......+.- ...++.+|||+|..           +++.
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQE-----------RFrs   86 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE-----------RFRS   86 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHH-----------HHhh
Confidence            34458899999999999999999987665433322333333333222222 34578899999954           4556


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      .++.+++.+.++++|+|++++.+.+. .+|++.++.-.|... ..+++|+||.|+.+.
T Consensus        87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk  143 (221)
T KOG0094|consen   87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK  143 (221)
T ss_pred             hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch
Confidence            77888999999999999998888777 899999988777641 258899999999873

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.63  E-value=8.1e-15  Score=106.48  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=75.5

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 027618           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (221)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (221)
                      ++|++|+|||||+|++++......  ...+.|.......+.+ .+..+.+|||||+.++.....  ...+....... +.
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            589999999999999999863222  2344555555566666 667899999999976543321  11222222111 57


Q ss_pred             CcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +|++++|+|+.+ .. ....++..+.+.     ..|+++|+||+|...
T Consensus        75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~  115 (158)
T cd01879          75 PDLIVNVVDATN-LE-RNLYLTLQLLEL-----GLPVVVALNMIDEAE  115 (158)
T ss_pred             CcEEEEEeeCCc-ch-hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence            899999999984 22 223333334331     348999999999865

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.63  E-value=5.2e-15  Score=108.54  Aligned_cols=117  Identities=19%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|++|+|||||++++++.... ....+......  ...... .+  ..+.+|||||......          ....
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~----------~~~~   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADT----------EQLE   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhc--eEEEEE-CCEEEEEEEEECCCCccccc----------chHH
Confidence            4899999999999999999875432 11111111111  122222 33  3577999999874110          0111


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++.+|++++|+|+++.-+... ..++..+.+........|+++|+||+|...
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            23456799999999986544443 456666665432122358999999999753

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04157 Arl6 Arl6 subfamily

Probab=99.63  E-value=7.4e-15  Score=107.19  Aligned_cols=116  Identities=14%  Similarity=0.080  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||++++++.........   +|.........+ .+..+.++||||...+           ......+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence            478999999999999999998653222211   122222223334 6778999999997532           1223345


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|++++.+... ..++..+.+... .....|+++|+||+|+..
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~  118 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD  118 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence            678899999999986554322 334444433211 112358999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.63  E-value=8e-15  Score=113.56  Aligned_cols=115  Identities=18%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      .|+++|+.|+|||||+++|+........                ....+.+.........| .+..+.+|||||..++. 
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~-   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI-   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence            4799999999999999999865321100                11223445555666777 88899999999987642 


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                                ..+..+++.+|++++|+++.+........+++.+.+. +    .|+++++||+|+...
T Consensus        79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a  131 (237)
T cd04168          79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA  131 (237)
T ss_pred             ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC
Confidence                      1222344566999999999988877777777766553 2    378999999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4.3e-15  Score=107.55  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+|+|.+|+|||||+-++....+.....++.+..-......+.- ....+.+|||.|...+.           ...
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy~-----------sla   71 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERYH-----------SLA   71 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCccccc-----------ccc
Confidence            348999999999999999988876665443333333333333333322 34678899999987543           344


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      +.++++++++|+|+|+++.-+... +.|++.|++..+...  .+.+|+||+|+....   -+...+|..+..-..+..++
T Consensus        72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA  149 (200)
T KOG0092|consen   72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA  149 (200)
T ss_pred             cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence            578899999999999996555544 788888887644322  466899999987632   34567777754344455777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      +...++.+.+..
T Consensus       150 KTg~Nv~~if~~  161 (200)
T KOG0092|consen  150 KTGENVNEIFQA  161 (200)
T ss_pred             ccccCHHHHHHH
Confidence            777776666555

>cd04114 Rab30 Rab30 subfamily

Probab=99.63  E-value=3.8e-15  Score=109.55  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||++++++.......  ....+.........+ .+  ..+.++||||...+           ..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~   71 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RS   71 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence            3489999999999999999999866542221  111122233333334 44  45788999996432           12


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++..+|++++|+|+++..+... ..++..+.......  .|+++|+||.|...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~  126 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAE  126 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            22345677899999999985443322 35555555543322  47899999999764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.62  E-value=7.2e-15  Score=108.20  Aligned_cols=115  Identities=17%  Similarity=0.082  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++........ +..  .......... .....+.+|||||...+....           .
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-----------~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV-PTV--FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-----------P   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-Cce--eeeeEEEEEECCEEEEEEEEeCCCcccccccc-----------h
Confidence            378999999999999999999887522211 111  1111112222 123468899999987542211           1


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++.+|++++|+|.+++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~  118 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD  118 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence            34467899999999985433332  345555554322   358999999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.62  E-value=1.2e-14  Score=110.64  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEeeCCceE
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV   71 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (221)
                      +|+++|++|+|||||+++|++.......                             ....+.|.........+ .+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            5899999999999999999765432110                             01145566666666666 78899


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++||||+.++           ...+..++..+|++++|+|+.+.....+...+..+... +.   +++++|+||+|+..
T Consensus        80 ~liDTpG~~~~-----------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQY-----------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GI---RHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHH-----------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CC---CcEEEEEEchhccc
Confidence            99999996431           12223345678999999999877666665544444332 32   35788999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.62  E-value=4.7e-15  Score=109.61  Aligned_cols=112  Identities=22%  Similarity=0.150  Sum_probs=72.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      |+++|++|+|||||++++++....... .+.  ........... .+  ..+.+|||||...+..           ....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDY-VPT--VFENYSADVEV-DGKPVELGLWDTAGQEDYDR-----------LRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--EEeeeeEEEEE-CCEEEEEEEEECCCCcccch-----------hchh
Confidence            589999999999999999987653221 111  11111112223 33  3588999999764321           1224


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..+|++++|+|+++.-+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  116 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE  116 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence            5678899999999986544443  346666665432   348999999999764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd00879 Sar1 Sar1 subfamily

Probab=99.62  E-value=1.2e-14  Score=109.00  Aligned_cols=128  Identities=14%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|||||||++++++......     .+|.......+.+ .+..+.++||||...           ....
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~   79 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL   79 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            4458999999999999999999998664211     1122233344555 677889999999542           1122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (221)
                      ...+++.++++++|+|+.+.-+... ..++..+.+. ......|+++++||+|+... ....+.+++.
T Consensus        80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~  146 (190)
T cd00879          80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALG  146 (190)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence            3345677899999999984422221 2233333221 11123589999999998642 2445666664

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.1e-14  Score=107.14  Aligned_cols=157  Identities=16%  Similarity=0.051  Sum_probs=108.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +.+...+|+++|.+|+|||+++-++....+..+-.++.+..-.......+. ....+.+|||.|...           +.
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQer-----------f~   75 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQER-----------FR   75 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchh-----------HH
Confidence            456678999999999999999999887765433333333333332222322 345788999999654           33


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      .....++++++++++|+|+.+.-+.+. ..|++.+.+.-...  .+.++|+||+|.-...   .+.-+++..+....++.
T Consensus        76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~E  153 (207)
T KOG0078|consen   76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFE  153 (207)
T ss_pred             HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHHHHHHHHHHhCCeEEE
Confidence            555667788899999999986665555 67999999874443  3899999999976421   34556666655566666


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .|++.-.++.+.+-.
T Consensus       154 tSAk~~~NI~eaF~~  168 (207)
T KOG0078|consen  154 TSAKTNFNIEEAFLS  168 (207)
T ss_pred             ccccCCCCHHHHHHH
Confidence            777777677666655

>cd04158 ARD1 ARD1 subfamily

Probab=99.62  E-value=1.5e-14  Score=106.60  Aligned_cols=147  Identities=15%  Similarity=0.027  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+|||||++++++....  .   ..+|.........+ .+..+.++||||...+.           ..+...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM--Q---PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC--C---cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence            5889999999999999999987431  1   12233333344555 67789999999976432           223345


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcccC---C---chhhhh
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGREC---P---KPLKKG  172 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~~---~---~~l~~~  172 (221)
                      +..+|++++|+|++++.+..+ ..++..+.+... ....|+++|+||.|+... ....+.+++.-..   .   ..+..+
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  142 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD  142 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence            577899999999985433322 333333332111 112489999999997542 1234555553110   1   223355


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       143 a~~g~gv~~~f~~  155 (169)
T cd04158         143 ARSGMGLYEGLDW  155 (169)
T ss_pred             CCCCCCHHHHHHH
Confidence            5555555555543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01890 LepA LepA subfamily

Probab=99.62  E-value=5.1e-15  Score=109.95  Aligned_cols=116  Identities=19%  Similarity=0.223  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc------ccc-------CCCCcceeeEEEEEEe----eCCceEEEEeCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFK------SRA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~------~~~-------~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~   82 (221)
                      +.|+++|++|+|||||++++++.....      ...       ...+.+.........+    .....+.+|||||+.++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            468999999999999999998743110      000       0112233322222222    13456889999998653


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .           ..+..++..+|++++|+|+.+..+..+...+..+..   .  ..|+++|+||+|+..
T Consensus        81 ~-----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~~  133 (179)
T cd01890          81 S-----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---N--NLEIIPVINKIDLPS  133 (179)
T ss_pred             H-----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---c--CCCEEEEEECCCCCc
Confidence            1           222334566799999999986666555444433322   1  237999999999754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.62  E-value=1.2e-15  Score=105.78  Aligned_cols=116  Identities=20%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|++|+|||||+++|++.....  ......+.+.......... ....+.++|++|...+.....           
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-----------   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ-----------   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-----------
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-----------
Confidence            68999999999999999999887641  1112222333333223322 233578999999754322211           


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      .....+|++++|+|.++..+... ..++.++..........|+++|.||.|
T Consensus        69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            11344599999999985443333 334455555433223358999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=3.2e-14  Score=102.46  Aligned_cols=154  Identities=15%  Similarity=0.085  Sum_probs=111.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+++++|.+|+|||+|+...+...+.+....+.+...-.....+.- ...++.+|||.|...           ++...
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe~-----------frsv~   72 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQES-----------FRSVT   72 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcHH-----------HHHHH
Confidence            347899999999999999999998876554443444333333344433 556899999999653           34556


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.+.+.|+|+|++.+-+... ..|+..++......  .-++++.||+|+-...   .+.-++|.+++.--++..++
T Consensus        73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSa  150 (216)
T KOG0098|consen   73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSA  150 (216)
T ss_pred             HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhh
Confidence            678889999999999996666555 67888887763222  3588999999986432   45667788765555666888


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      +..+.+++++..
T Consensus       151 kt~~~VEEaF~n  162 (216)
T KOG0098|consen  151 KTAENVEEAFIN  162 (216)
T ss_pred             hhhhhHHHHHHH
Confidence            888888887776

>cd04128 Spg1 Spg1p

Probab=99.62  E-value=1e-14  Score=108.79  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++.........+.+  .......+.. .+  ..+.+|||+|...+           ....
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g--~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~   66 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG--VNFMEKTISI-RGTEITFSIWDLGGQREF-----------INML   66 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--eEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhh
Confidence            3789999999999999999987765322111111  1122223333 33  46889999996532           1233


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ..+++.+|++++|+|++++.+..+ ..|++.++.....  ..| ++|+||+|+.
T Consensus        67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~  117 (182)
T cd04128          67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLF  117 (182)
T ss_pred             HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhcc
Confidence            456788999999999986655554 4666666654222  234 6889999985

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04151 Arl1 Arl1 subfamily

Probab=99.62  E-value=9.7e-15  Score=106.36  Aligned_cols=145  Identities=14%  Similarity=0.049  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||+++++.......     .+|.........+ .+..+.+|||||...+           ......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence            589999999999999999976654211     1222223334445 6678999999997532           1233445


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchhhhh
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPLKKG  172 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l~~~  172 (221)
                      +..++++++|+|+++..+...  ..+...++.. . ....|+++|+||+|..+.. ...+.+.+....     .+.+..+
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS  141 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence            678899999999985432221  2222222221 1 1235899999999986421 223333332111     1234455


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       142 a~~~~gi~~l~~  153 (158)
T cd04151         142 AIKGEGLDEGMD  153 (158)
T ss_pred             ccCCCCHHHHHH
Confidence            555555555544

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04148 RGK RGK subfamily

Probab=99.62  E-value=1.4e-14  Score=111.29  Aligned_cols=117  Identities=21%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||++++++.........+... ........+.. ....+.+|||||...          .+.   .
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~----------~~~---~   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM----------WTE---D   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch----------HHH---h
Confidence            37999999999999999999766543111111111 11112122222 345688999999751          011   1


Q ss_pred             hhcC-CCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++. .+|++++|++++++-+... ..++..+.+.. .....|+++|+||+|+..
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~  120 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLAR  120 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccc
Confidence            2334 7899999999986544433 45566665542 223458999999999764

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.62  E-value=2.8e-14  Score=126.44  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=84.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||+|+|+|......  ...+.|.........+ .+..+.++||||.++......  ...+.+...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence            36899999999999999999999865322  3456777777667766 788999999999997653221  122222222


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ......+|++++|+|+++ ... ...+..++.+.     ..|+++++||+|..+
T Consensus        80 -~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~  126 (772)
T PRK09554         80 -YILSGDADLLINVVDASN-LER-NLYLTLQLLEL-----GIPCIVALNMLDIAE  126 (772)
T ss_pred             -HHhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence             122357899999999984 332 23344445443     248999999999864

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.62  E-value=3e-14  Score=126.38  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=88.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.........+ .+..+.+|||||+.......  ...+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence            3489999999999999999999998742222 2344555555555566 77889999999986422211  111222221


Q ss_pred             --HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..+++.+|++++|+|++++.+.++..++..+.+.     ..|+++|+||+|+..
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~  575 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD  575 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence              2446788999999999988998887777666542     247999999999875

>cd01893 Miro1 Miro1 subfamily

Probab=99.61  E-value=1.2e-14  Score=106.85  Aligned_cols=114  Identities=17%  Similarity=0.091  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+|||||++++++....... ..... .......... ....+.+|||||.....           ..+...
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLP-EITIPADVTP-ERVPTTIVDTSSRPQDR-----------ANLAAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccC-CCccc-ceEeeeeecC-CeEEEEEEeCCCchhhh-----------HHHhhh
Confidence            7899999999999999999987653221 11100 0011111111 34578899999976421           111233


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|++++++.+...  ..|++.+++.. .  ..|+++|+||+|+..
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~  117 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRD  117 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence            467899999999986555444  35666666542 2  348999999999865

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.61  E-value=2.6e-14  Score=105.16  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|||||||++.+++..  .....   +|.........+ .+..+.++||||...           +......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            47999999999999999999762  12211   122222334555 678899999999542           12233456


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|+++..+... ..++..+..... ....|+++|+||.|+..
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~  114 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKN  114 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcC
Confidence            678899999999985543333 344444433211 12358999999999765

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.61  E-value=1.8e-14  Score=105.23  Aligned_cols=118  Identities=18%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|+|||||++++++............ ........... ....+.+|||||..++.           .....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----------~~~~~   67 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDG-EDVQLNILDTAGQEDYA-----------AIRDN   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECC-EEEEEEEEECCChhhhh-----------HHHHH
Confidence            4799999999999999999997765322111111 11111111111 23468899999975422           22334


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..++++++|+++.+.-+... ..++..+..... ....|+++|+||+|...
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            5567799999999874333222 344455544322 23458999999999865

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00880 Era_like Era (E

Probab=99.61  E-value=4.2e-14  Score=102.20  Aligned_cols=118  Identities=25%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 027618           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (221)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (221)
                      ++|++|+|||||+|+|++....... ...+.+.........+.....+.++||||+.+..........    .+......
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence            5799999999999999988654322 233344444444554423678999999999876544332212    22234456


Q ss_pred             CcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +|++++|++...........+......     ...|+++|+||+|+..
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~  118 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLP  118 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCC
Confidence            799999999986665555442222222     2347999999999887

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.61  E-value=3.9e-15  Score=113.91  Aligned_cols=127  Identities=24%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ...+..|+++|.||+|||||||+|++.......  -.+.+. ...+....+ .+..+++|||||+.+....+    .+.+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D----~~~r  108 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKD----AEHR  108 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhc-cccceEEecCCCcccchhhh----HHHH
Confidence            345577789999999999999999965442221  111122 222222223 66889999999999844333    3455


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      +.+...++..|.+++++++.++.-.-+..+++.+.-....   .++++++|.+|+..+
T Consensus       109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p  163 (296)
T COG3596         109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence            5555666777999999999888766666676666544222   479999999998763

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.61  E-value=5.8e-15  Score=107.60  Aligned_cols=138  Identities=18%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|++|+|||||+|+|+|.....      ..+     ....+ ...  .+|||||.+...   ....+.+    ..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTPGEYFSH---PRWYHAL----IT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCCccccCC---HHHHHHH----HH
Confidence            479999999999999999999864210      111     11222 222  279999986432   2222222    23


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccC--CchhhhhHHHHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKKGATKLR  177 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~--~~~l~~~~~~~~  177 (221)
                      .+..+|++++|+|+++..+....    ++.+. +.  ..|+++++||+|+...+...+.+++.+..  .+.+..++..-.
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~  133 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQ  133 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence            45778999999999855433222    22222 11  23799999999976533444555554322  144555665555


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      .+.+.++.
T Consensus       134 gi~~l~~~  141 (158)
T PRK15467        134 SVQQLVDY  141 (158)
T ss_pred             CHHHHHHH
Confidence            55555553

>cd04169 RF3 RF3 subfamily

Probab=99.61  E-value=2.2e-14  Score=112.92  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------------cCCCCcceeeEEEEEEeeCCceEEEEeCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (221)
                      .+.|+++|+.|+|||||+++|+........                    ....+.+.........| .+..+.+|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence            378999999999999999999854321110                    00123444455556777 889999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ..++.       .+    ...+++.+|++++|+++.+........+++.....     ..|+++++||+|....
T Consensus        81 ~~df~-------~~----~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDFS-------ED----TYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGR  138 (267)
T ss_pred             chHHH-------HH----HHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCC
Confidence            76532       11    22334567999999999877766666665554332     2379999999997653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04176 Rap2 Rap2 subgroup

Probab=99.61  E-value=1.3e-14  Score=106.14  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++.++........ .+.  ........... .+  ..+.+|||||...+...           .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----------~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY-DPT--IEDFYRKEIEV-DSSPSVLEILDTAGTEQFASM-----------R   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCc--hhheEEEEEEE-CCEEEEEEEEECCCcccccch-----------H
Confidence            68999999999999999999877653221 111  11122223333 33  35778999997654321           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...++.+|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+..
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~  120 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLES  120 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence            234567799999999986554443 4566666654321 2348999999999754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04134 Rho3 Rho3 subfamily

Probab=99.61  E-value=1e-14  Score=109.41  Aligned_cols=114  Identities=19%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ++|+++|++|+|||||++++++....... .+   |.... ....... ....+.+|||||...+..           ..
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~-~~---t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-----------l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY-EP---TVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-----------LR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc-CC---cceeeeEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence            47899999999999999999987653221 11   11111 1122221 234688999999754321           12


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|++++++-+...  ..|+..+.....   ..|+++|+||+|+..
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~  118 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE  118 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            245678899999999986655544  346777765422   348999999999865

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=5.2e-14  Score=102.94  Aligned_cols=120  Identities=22%  Similarity=0.305  Sum_probs=74.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH---
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG---   98 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---   98 (221)
                      |+++|++|+|||||+|.|++...........+.|.....  ..  ....++++||||+...... .....+....+.   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHHH
Confidence            799999999999999999954332222222233333222  22  2348899999998764331 111222222222   


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+++++++++.+...+......++++... +    .|+++++||+|...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~  124 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK  124 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence            222445788999998866666666666666553 2    47999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.61  E-value=3.8e-14  Score=112.06  Aligned_cols=115  Identities=23%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      +|+++|++|+|||||+|+|++.......   .             ...+.+.........| .+..+.+|||||..++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence            4799999999999999999764321110   0             0113334444555666 7889999999997542  


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                           ..    .+..++..+|++++|++++..........++.+...     ..|.++++||+|....
T Consensus        78 -----~~----~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~  131 (268)
T cd04170          78 -----VG----ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERA  131 (268)
T ss_pred             -----HH----HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCC
Confidence                 12    222344566999999999877776666666655432     2378999999998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.60  E-value=2.2e-14  Score=107.01  Aligned_cols=149  Identities=13%  Similarity=0.055  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|++|+|||||++++........     .+|.......+.. .+..+.+|||||...           +....
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~   78 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW   78 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence            348899999999999999999965443211     1222233334445 677899999999643           22333


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhcccCC-----chh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLGRECP-----KPL  169 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~~-----~~l  169 (221)
                      ..++..+|++++|+|++++-+...  ..+.+.+.+...  ...|+++|+||.|..... ...+.+.+.....     ..+
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~  156 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ  156 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence            456788899999999985433222  222333332221  235899999999975421 2334444432100     112


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       157 ~~Sa~tg~gv~e~~~~  172 (182)
T PTZ00133        157 GCCATTAQGLYEGLDW  172 (182)
T ss_pred             eeeCCCCCCHHHHHHH
Confidence            3455555555555554

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.60  E-value=1.2e-14  Score=107.73  Aligned_cols=113  Identities=20%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|.+|+|||||+++++........    .+|..... ..... .+  ..+.+|||||...+..           .
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~----~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEY----VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDR-----------L   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEECCCccchhh-----------h
Confidence            58999999999999999999976652221    11221111 12233 33  4678999999765321           1


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..+|++++|+|++++-+....  .|+..+....+   ..|+++|+||.|+..
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~  119 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRD  119 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence            12466788999999999866555442  46666665422   348999999999754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.60  E-value=3.4e-14  Score=112.34  Aligned_cols=132  Identities=23%  Similarity=0.257  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEee-C--CceEEEEeCCCCCCCCCCchHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFV   89 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~~~~   89 (221)
                      .++|+++|.+|+|||||||+|++.........      ....+........... .  ...+.|+||||+++.- .+...
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence            37899999999999999999999876544210      1111222222222221 2  2368899999998753 33444


Q ss_pred             HHHHHHHHHhhc-----------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           90 GKEIVKCIGMAK-----------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        90 ~~~~~~~~~~~~-----------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+..++...+                 ..+|++||+++++ .++++.|...++.|.+.      .++|.|+.|+|.+.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence            444544433221                 3579999999985 47888998887777653      37999999999997


Q ss_pred             CChhhHHH
Q 027618          152 DNDETLED  159 (221)
Q Consensus       152 ~~~~~~~~  159 (221)
                        ...+..
T Consensus       157 --~~el~~  162 (281)
T PF00735_consen  157 --PEELQA  162 (281)
T ss_dssp             --HHHHHH
T ss_pred             --HHHHHH
Confidence              444443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.60  E-value=1.6e-14  Score=106.96  Aligned_cols=114  Identities=19%  Similarity=0.109  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||+.+++........ .+.  ........... .+  ..+.+|||||...+.           ...
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY-IPT--VFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RLR   66 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcC-CCc--ceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hhh
Confidence            57999999999999999999876543221 111  11111112222 33  467899999965432           122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+.++|++++|+|++++-+...  ..|+..+.....   ..|+++|+||.|+..
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~  119 (174)
T cd01871          67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  119 (174)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhcc
Confidence            345678899999999986555544  246666655422   348999999999753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.60  E-value=3.6e-14  Score=105.09  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=75.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||++++++......     .+|.........+ .+..+.++||||...+           .....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQESL-----------RSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHHH-----------HHHHH
Confidence            47999999999999999999987654321     1233333344555 6778999999997532           12233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++..+|++++|+|+++..+... ...+..+.+..+ ....|+++++||+|+..
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG  130 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence            45678899999999985433222 222332222111 12358999999999764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.3e-14  Score=105.18  Aligned_cols=121  Identities=18%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..++|+++|.+|+|||-|+.+.+...+.....++.+.........++. +-....+|||.|...+           +..
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQERy-----------rAi   79 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQERY-----------RAI   79 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhhh-----------ccc
Confidence            4458899999999999999999998877555555555555544444443 4557889999996543           234


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++++.+.++|+|++.+.+.+. .+|++.|++.....  .++++|.||+|+..
T Consensus        80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~  133 (222)
T KOG0087|consen   80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNH  133 (222)
T ss_pred             cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhh
Confidence            4567899999999999986777665 78888888865443  47999999999864

>cd04149 Arf6 Arf6 subfamily

Probab=99.60  E-value=3.1e-14  Score=104.86  Aligned_cols=147  Identities=15%  Similarity=0.109  Sum_probs=88.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|.+|+|||||++++........ .    +|.........+ ....+.+|||||...           +.....
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   71 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR   71 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            47999999999999999999986543211 1    122222223344 677899999999743           122234


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCC-ChhhHHHHhccc--C---Cchhh
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLGRE--C---PKPLK  170 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~--~---~~~l~  170 (221)
                      .++..+|++++|+|+++..+...  ..+++.+.....  ...|+++|+||+|+... ....+.+++.-.  .   -..+.
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP  149 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEE
Confidence            56678899999999986543322  223333332211  23489999999997542 134455554311  0   12344


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++....++.+.++
T Consensus       150 ~SAk~g~gv~~~~~  163 (168)
T cd04149         150 SCATSGDGLYEGLT  163 (168)
T ss_pred             eeCCCCCChHHHHH
Confidence            56665555555544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.60  E-value=5.7e-14  Score=104.68  Aligned_cols=149  Identities=15%  Similarity=0.065  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|..|+|||||+++++.......     .+|.......+.+ .+..+.+|||||...           +....
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~   78 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLW   78 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence            347999999999999999999986544221     1222233334455 677899999999532           22333


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhcccC--C---chh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLGREC--P---KPL  169 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~--~---~~l  169 (221)
                      ...+..+|++++|+|++++.+..+  ..+.+.+.+...  ...|++|++||.|..... ...+.+.+.-..  +   ..+
T Consensus        79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~  156 (181)
T PLN00223         79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ  156 (181)
T ss_pred             HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEE
Confidence            445678899999999985443322  223333332211  234899999999976421 234444443111  0   112


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       157 ~~Sa~~g~gv~e~~~~  172 (181)
T PLN00223        157 STCATSGEGLYEGLDW  172 (181)
T ss_pred             eccCCCCCCHHHHHHH
Confidence            3566666666665554

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.60  E-value=3.3e-14  Score=105.42  Aligned_cols=115  Identities=14%  Similarity=0.083  Sum_probs=73.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||++++........     .+|.........+ ....+.+|||||...+           .....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~-----~~t~~~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~   75 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVTT-----IPTIGFNVETVTY-KNISFTVWDVGGQDKI-----------RPLWR   75 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence            48999999999999999999964433111     1232333334445 6778999999997542           12334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++..+|++++|+|++++.+... ..++..+.... .....|++||+||.|+..
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~  128 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPD  128 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCccc
Confidence            45688899999999985433322 23333322110 011348999999999754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01875 RhoG RhoG subfamily

Probab=99.60  E-value=1.3e-14  Score=109.14  Aligned_cols=115  Identities=17%  Similarity=0.085  Sum_probs=74.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|.+|+|||||+.+++...+.....    +|..... ...... ....+.+|||||...+.           ..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~-----------~l   67 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYI----PTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-----------RL   67 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCC----CceEeeeEEEEEECCEEEEEEEEECCCchhhh-----------hh
Confidence            3789999999999999999998765432211    1111111 112220 23468899999975422           22


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.+|++++|+|++++-+....  .|...+.... .  ..|+++|+||.|+..
T Consensus        68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~  121 (191)
T cd01875          68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRN  121 (191)
T ss_pred             hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhc
Confidence            33467889999999999866655543  3555555432 2  348999999999754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.59  E-value=2.9e-14  Score=123.04  Aligned_cols=128  Identities=19%  Similarity=0.263  Sum_probs=89.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+.++|+++|+.++|||||+++|.+..+...  ...+.|.......+.+..+..+.+|||||+.++..           .
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-----------~  151 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-----------M  151 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchhh-----------H
Confidence            4568999999999999999999998765332  23355666555666663334899999999876431           1


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                      ....+..+|++++|+++++...++....+..+...     ..|+++++||+|+...+...+.+.+.
T Consensus       152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~~~~~e~v~~~L~  212 (587)
T TIGR00487       152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-----NVPIIVAINKIDKPEANPDRVKQELS  212 (587)
T ss_pred             HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcccccCCHHHHHHHHH
Confidence            22455778999999999877777776666554332     23799999999986533444444443

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.59  E-value=2e-14  Score=107.47  Aligned_cols=127  Identities=11%  Similarity=0.051  Sum_probs=79.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|.+|||||||++.+.+......     .+|.........+ .+..+.++||||...+           ...
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            4458999999999999999999998754211     1222233344445 6778999999997531           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYL  161 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l  161 (221)
                      ...++..+|++++|+|+++.-+... ...+..+.+... ....|+++|+||.|.... ....+.+.+
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l  143 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYAL  143 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence            3356678899999999984322211 222322222111 123489999999997532 133455555

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.59  E-value=3.1e-14  Score=103.55  Aligned_cols=113  Identities=14%  Similarity=0.081  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+|||||++++++.... .    ...|.........+ .+..+.+|||||...+           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-C----CCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            4899999999999999999988631 1    12222333344445 6778999999997642           1223345


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|+.+.-+... ..++..+..... ....|+++++||+|...
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~  114 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG  114 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence            567799999999985422222 233333322211 12348999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04177 RSR1 RSR1 subgroup

Probab=99.59  E-value=2.6e-14  Score=105.21  Aligned_cols=117  Identities=20%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||++++++...... ..+....  .......+. ....+.+|||||...+..           ...
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIED--SYRKQVEIDGRQCDLEILDTAGTEQFTA-----------MRE   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchh--eEEEEEEECCEEEEEEEEeCCCcccchh-----------hhH
Confidence            5899999999999999999987764322 1111111  112222231 224678999999775432           222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..++++++|++.+++-+... ..+.+.+.+.... ...|+++++||.|...
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~  120 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED  120 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence            34566799999999985444333 4455555554332 2348999999999764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01889 SelB_euk SelB subfamily

Probab=99.59  E-value=4.6e-14  Score=106.15  Aligned_cols=115  Identities=17%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc---cc--cccCCCCcceeeEEEEEEee-------------CCceEEEEeCCCCCCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRA---FK--SRASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF   82 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~~   82 (221)
                      +|+++|++++|||||++++++...   ..  ......+.|.........+.             .+..+.+|||||..+ 
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-   80 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS-   80 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence            689999999999999999997310   00  00112234444444434331             256899999999732 


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                +...+......+|++++|+|+.+..+..+...+.... ..    ..|+++++||+|+..
T Consensus        81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~----~~~~iiv~NK~Dl~~  134 (192)
T cd01889          81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-IL----CKKLIVVLNKIDLIP  134 (192)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-Hc----CCCEEEEEECcccCC
Confidence                      2222223345679999999998766666544443322 22    237999999999874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04155 Arl3 Arl3 subfamily

Probab=99.59  E-value=4.1e-14  Score=104.51  Aligned_cols=117  Identities=17%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+++|++......     ..|.......+.+ .+..+.++||||...           +...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            3468999999999999999999998754211     1122222334445 678899999999642           1233


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..++..+|++++|+|+.+.-+... ..++..+.+... ....|+++++||+|...
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~  129 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLAT  129 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCcc
Confidence            3445677899999999984322222 223222222111 12358999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.58  E-value=5e-14  Score=106.86  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEee--------------------------CC----
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK--------------------------DG----   68 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~----   68 (221)
                      .+|+++|++|+|||||+.+|++... ...+....+.+..+......|.                          .+    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3689999999999999999987732 2122222333434433333331                          02    


Q ss_pred             --ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618           69 --QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (221)
Q Consensus        69 --~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (221)
                        ..+.||||||..           .+...+...+..+|++++|+|+.+. ........+..+... +.   +|+++|+|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~---~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GL---KHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CC---CcEEEEEE
Confidence              678999999942           2334444555677999999999853 334444455444332 22   36899999


Q ss_pred             cCCCCC
Q 027618          146 GGDELE  151 (221)
Q Consensus       146 k~D~~~  151 (221)
                      |+|+..
T Consensus       146 K~Dl~~  151 (203)
T cd01888         146 KIDLVK  151 (203)
T ss_pred             chhccC
Confidence            999875

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.58  E-value=4.7e-14  Score=108.06  Aligned_cols=115  Identities=17%  Similarity=0.072  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||++++++...+.....+.+.. ..  ..+.. .....+.+|||+|...+           .....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-~~--~~~~~~~~~v~L~iwDt~G~e~~-----------~~l~~   67 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-YT--ASFEIDKRRIELNMWDTSGSSYY-----------DNVRP   67 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-eE--EEEEECCEEEEEEEEeCCCcHHH-----------HHHhH
Confidence            589999999999999999999876532211111111 11  12222 02346788999996432           12334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+++.+|++++|+|++++-+...  ..|...+.... .  ..|+++|+||+|+..
T Consensus        68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~--~~piiLVgnK~DL~~  119 (222)
T cd04173          68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-P--NAKVVLVGCKLDMRT  119 (222)
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEECccccc
Confidence            56789999999999986654444  34444444432 2  348999999999754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.58  E-value=1.2e-14  Score=103.96  Aligned_cols=134  Identities=17%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||+|++++....     . ..|.     ...+ ..   .+|||||...   ..    ......+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-----~-~~t~-----~~~~-~~---~~iDt~G~~~---~~----~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-----Y-KKTQ-----AVEY-ND---GAIDTPGEYV---EN----RRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-----c-ccce-----eEEE-cC---eeecCchhhh---hh----HHHHHHHHHH
Confidence            7899999999999999999987531     1 1121     1223 22   5899999742   11    1112222234


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccC-CchhhhhHHHHH
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGREC-PKPLKKGATKLR  177 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~-~~~l~~~~~~~~  177 (221)
                      ++.+|++++|+|++++.+.....+++.    .+    .|+++|+||+|+....  .+...++++... ...+..++....
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  131 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQ  131 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence            688899999999986766544433322    12    2799999999976421  122344444321 134445555444


Q ss_pred             hHHHHHH
Q 027618          178 DQQFEVD  184 (221)
Q Consensus       178 ~~~~~~~  184 (221)
                      ++.+.++
T Consensus       132 gi~~l~~  138 (142)
T TIGR02528       132 GLEALVD  138 (142)
T ss_pred             CHHHHHH
Confidence            5554443

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.58  E-value=9.9e-15  Score=106.60  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      +|+++|+.|+|||||++++.+.........+.+.  ......+.. .....+.+||++|...+        .   .....
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~---~~~~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF--------D---SLRDI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG--------H---HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc--------c---ccccc
Confidence            5899999999999999999987653322222212  222222333 12336889999996431        1   11123


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGATK  175 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~~  175 (221)
                      .+..+|++++|++++++-+... ..|+..+......  ..|+++++||.|.....   .....++..+....++..++..
T Consensus        68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  145 (162)
T PF00071_consen   68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKN  145 (162)
T ss_dssp             HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTT
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCC
Confidence            4577799999999985544333 5677777666442  24899999999976421   2345556665444555666666


Q ss_pred             HHhHHHHHHh
Q 027618          176 LRDQQFEVDS  185 (221)
Q Consensus       176 ~~~~~~~~~~  185 (221)
                      ...+.+.+..
T Consensus       146 ~~~v~~~f~~  155 (162)
T PF00071_consen  146 GENVKEIFQE  155 (162)
T ss_dssp             TTTHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            6666665554

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>CHL00071 tufA elongation factor Tu

Probab=99.58  E-value=3.1e-14  Score=118.73  Aligned_cols=120  Identities=15%  Similarity=0.215  Sum_probs=85.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +.+..+|+++|+.++|||||+++|++......              .....+.|.......+.+ .+..+.++||||+. 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~-   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA-   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH-
Confidence            45569999999999999999999997532110              111245565555445545 66789999999953 


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                .+...+...+..+|++++|+|+.+....++...+..+... +.   +++++++||+|+..
T Consensus        87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~  142 (409)
T CHL00071         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVD  142 (409)
T ss_pred             ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCC
Confidence                      2233334455677999999999988888888888776653 32   23789999999875

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.58  E-value=3.8e-14  Score=125.23  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ..+.+.|+++|+.++|||||+++|.+..+...  ...+.|.....+.+.+ .+..++||||||+.+|..           
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~-----------  352 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTA-----------  352 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccchh-----------
Confidence            45668999999999999999999987665322  2345566666666777 678899999999876532           


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+..+|++++|+++++....+....+..+...     ..|++|++||+|+..
T Consensus       353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~~  403 (787)
T PRK05306        353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-----GVPIIVAINKIDKPG  403 (787)
T ss_pred             HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-----CCcEEEEEECccccc
Confidence            112345667999999999988877776666655432     237999999999864

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.58  E-value=2.4e-14  Score=105.88  Aligned_cols=114  Identities=20%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++...... ..+.  ........... .+  ..+.+|||||...+...           .
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE-YVPT--AFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKL-----------R   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCc--eeeeeeEEEEE-CCEEEEEEEEECCCChhhccc-----------c
Confidence            3689999999999999999987654322 1111  11111122223 33  46788999997543221           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++..+|++++|+|+.++-+...  ..|+..+.... .  ..|+++++||.|+..
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~  118 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRT  118 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhcc
Confidence            245678899999999986655444  35666666532 1  248999999999764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.58  E-value=4.6e-14  Score=102.84  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|+|||||++++++.......     +|...............+.++||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            4899999999999999999988753221     1222222333332456899999999653           11223345


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|+.+..+... ..++..+.+... ....|+++|+||+|...
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  115 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG  115 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence            567899999999985443222 222332222111 12358999999999753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=2e-13  Score=94.82  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|..|+|||.|++..+...+|+....+.+.........+.. ...++.+|||.|...           ++.....
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-ekiklqiwdtagqer-----------frsitqs   75 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-EKIKLQIWDTAGQER-----------FRSITQS   75 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-eEEEEEEeeccchHH-----------HHHHHHH
Confidence            7899999999999999999987776655433333333333333322 345789999999543           3444556


Q ss_pred             hcCCCcEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhH-HHHhcccCCchhhhhHHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETL-EDYLGRECPKPLKKGATK  175 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~-~~~l~~~~~~~l~~~~~~  175 (221)
                      .++.+|++++|+|+++..+.. ...|+..+.+.....+  -.++|.||.|+.+..  +..+ ++|.....--+|..++.+
T Consensus        76 yyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake  153 (213)
T KOG0095|consen   76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE  153 (213)
T ss_pred             HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence            677889999999999665543 3788888887644332  468999999987532  1222 333332111234466666


Q ss_pred             HHhHHHHHHh
Q 027618          176 LRDQQFEVDS  185 (221)
Q Consensus       176 ~~~~~~~~~~  185 (221)
                      ..+..+++.+
T Consensus       154 a~nve~lf~~  163 (213)
T KOG0095|consen  154 ADNVEKLFLD  163 (213)
T ss_pred             hhhHHHHHHH
Confidence            6666665555

>cd04135 Tc10 TC10 subfamily

Probab=99.57  E-value=4.5e-14  Score=104.36  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++....... .+.  ........+.. .+  ..+.+|||||...+....           
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-----------   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY-VPT--VFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR-----------   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--eeeeeEEEEEE-CCEEEEEEEEeCCCcccccccc-----------
Confidence            37899999999999999999987653221 111  11111112333 33  346789999976543221           


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|++..++-+...  ..|+..+... .  ...|+++|+||+|+..
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~  118 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRD  118 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhc
Confidence            135677899999999986544443  3456666543 2  2348999999999754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.57  E-value=7e-14  Score=105.65  Aligned_cols=118  Identities=16%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee------CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +|+++|.+|+|||||++++++.........+.+.+  .......+.      ....+.+|||+|...+           .
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-----------~   68 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSESV-----------K   68 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCchhH-----------H
Confidence            68999999999999999999876533221111111  111122221      1236889999996532           2


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+++.+|++++|+|++++-+... ..|+..+.....                 .....|+++|+||.|+..
T Consensus        69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            333456788999999999997766555 567777755311                 112348999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.57  E-value=6.1e-14  Score=102.35  Aligned_cols=112  Identities=15%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+|||||++++...... ...    +|.........+ ....+.+|||||...           +......+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-ccC----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            6899999999999999999655442 111    122222223444 667899999999743           12233456


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (221)
                      +..+|++++|+|++++.+...  ..+++.+.....  ...|+++++||.|+..
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  115 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence            788899999999985433222  122233222211  1358999999999754

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.57  E-value=2.6e-14  Score=105.13  Aligned_cols=115  Identities=19%  Similarity=0.206  Sum_probs=71.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee--------------------------------------------
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST--------------------------------------------   57 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--------------------------------------------   57 (221)
                      |+++|..++|||||||+|+|....+.+..+......                                            
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999999865544322110000                                            


Q ss_pred             ---------eEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHH
Q 027618           58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL  128 (221)
Q Consensus        58 ---------~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l  128 (221)
                               ........+....+.|+||||+.+......       ..+..+++.+|++++|+++....+..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence                     000011122345699999999976433333       3333444777999999999966766665555444


Q ss_pred             HHHhcccccccEEEEEecC
Q 027618          129 QTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus       129 ~~~~~~~~~~~~ivv~tk~  147 (221)
                      .+.    ....+++|+||+
T Consensus       154 ~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  154 LDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             HTT----TCSSEEEEEE-G
T ss_pred             hcC----CCCeEEEEEcCC
Confidence            332    122489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.57  E-value=3.4e-14  Score=105.65  Aligned_cols=116  Identities=21%  Similarity=0.219  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++..........   +.......... .  ...+.++||||..++.           ...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~-----------~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPT---IENTFSKIIRY-KGQDYHLEIVDTAGQDEYS-----------ILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcc---hhhhEEEEEEE-CCEEEEEEEEECCChHhhH-----------HHH
Confidence            68999999999999999999977642221111   11111122222 2  2356899999975421           122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..++++++|++.++..+... ..+.+.+.+..+. ...|+++++||+|...
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT  120 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence            234556799999999985444333 3444555443332 2348999999999764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>COG2262 HflX GTPases [General function prediction only]

Probab=99.57  E-value=8.8e-14  Score=112.05  Aligned_cols=128  Identities=25%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+.|+++|.|+||||||+|+|++...+..+  .-..|..+......++.+..+.+-||-||.+  .-+..+..-+..-
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksT  265 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKST  265 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHH
Confidence            45589999999999999999999998875443  3345556666666665688999999999986  2233333333333


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +. ....+|+++.|+|++++.-... ....+.|.++ +.. ..|+++|+||+|++.
T Consensus       266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~  318 (411)
T COG2262         266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLE  318 (411)
T ss_pred             HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccC
Confidence            33 2367899999999997643333 3344444554 422 258999999999986

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=94.39  Aligned_cols=150  Identities=15%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ...+++|.+|+|||||+-......+  ++.....+........++.+ ....+.+|||+|..           .++....
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence            4567899999999999988766544  22222223333444444441 23478899999943           3445555


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++++|++++|+|++..-+... .+|++.++..+..   .|-++|.||.|.....   .+....|..+...+.|..+++
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK  152 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK  152 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhh
Confidence            67889999999999986666655 7888888887552   3789999999976432   345566776656667778888


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      +..+...++.-
T Consensus       153 e~~NvE~mF~c  163 (198)
T KOG0079|consen  153 ENENVEAMFHC  163 (198)
T ss_pred             hcccchHHHHH
Confidence            87777777665

>cd00876 Ras Ras family

Probab=99.57  E-value=8.6e-14  Score=101.15  Aligned_cols=148  Identities=16%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|++|+|||||++++++.... ....+  .+.......... .  ...+.++|+||....           .....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDP--TIEDSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-cCcCC--ChhHeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence            5899999999999999999987632 22111  122222223333 3  346789999996531           12222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..+..+|++++|++.++.-+..+ ..+...+...... ...|+++++||+|.....   ...+..+..+.....+..++.
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  144 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK  144 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence            34556799999999885433222 4445555554331 235899999999987521   233444444322234444444


Q ss_pred             HHHhHHHHHH
Q 027618          175 KLRDQQFEVD  184 (221)
Q Consensus       175 ~~~~~~~~~~  184 (221)
                      ....+.+.++
T Consensus       145 ~~~~i~~l~~  154 (160)
T cd00876         145 DNINIDEVFK  154 (160)
T ss_pred             CCCCHHHHHH
Confidence            4444444333

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.56  E-value=9.2e-14  Score=100.61  Aligned_cols=113  Identities=20%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      |+++|++|||||||+|+|++........    +|.......... .+..+.++||||...           +......++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            7899999999999999999986532221    122222233444 557889999999643           112233455


Q ss_pred             CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+|++++|+|+++..+... ..++..+..... ....|+++|+||.|...
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~  115 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPG  115 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccC
Confidence            67899999999884322211 222222222111 12348999999999765

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.56  E-value=2.2e-14  Score=111.74  Aligned_cols=151  Identities=18%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++...... ..+  +........+.. .+  ..+.+|||+|...+..           ..
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~-y~p--Ti~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~-----------~~   65 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQ-YTP--TIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPA-----------MR   65 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCC-CCC--ChhHhEEEEEEE-CCEEEEEEEEECCCChhhhH-----------HH
Confidence            3789999999999999999987665321 111  111122222333 33  4677999999754321           11


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccccEEEEEecCCCCCCC---hhhHHHHhccc-C
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-C  165 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~  165 (221)
                      ..++..+|++++|+|++++-+... ..+++.+.+...       .....|+++|+||+|+....   ...+.+++... .
T Consensus        66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~  145 (247)
T cd04143          66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDEN  145 (247)
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCC
Confidence            234567799999999996554443 455555554311       11245899999999986421   23445554421 1


Q ss_pred             CchhhhhHHHHHhHHHHHHh
Q 027618          166 PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ...+..++....++.++++.
T Consensus       146 ~~~~evSAktg~gI~elf~~  165 (247)
T cd04143         146 CAYFEVSAKKNSNLDEMFRA  165 (247)
T ss_pred             CEEEEEeCCCCCCHHHHHHH
Confidence            23455666555555555554

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00053 DYNc Dynamin, GTPase

Probab=99.56  E-value=3.9e-13  Score=103.58  Aligned_cols=140  Identities=16%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------------------------------------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------------------------------------------   52 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~---------------------------------------------   52 (221)
                      ..+.++++|++|+||||++++|+|...+..+....                                             
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            34689999999999999999999986322211000                                             


Q ss_pred             ----CcceeeEEEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhhcCC-CcEEEEEEeCCCCCCHHH-HHH
Q 027618           53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAA  124 (221)
Q Consensus        53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~-~~~  124 (221)
                          +.+..+....+..+....++|+||||+....  .........+...+..++.. .+.+++|++++..+...+ ...
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                0001111112233344679999999997532  11233455566656656553 358899999886677666 455


Q ss_pred             HHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618          125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (221)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (221)
                      .+.+...     ..++++|+||.|.... +....+.+++
T Consensus       185 a~~ld~~-----~~rti~ViTK~D~~~~-~~~~~~~~~~  217 (240)
T smart00053      185 AKEVDPQ-----GERTIGVITKLDLMDE-GTDARDILEN  217 (240)
T ss_pred             HHHHHHc-----CCcEEEEEECCCCCCc-cHHHHHHHhC
Confidence            5555442     3479999999999863 3335565653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.56  E-value=2.3e-13  Score=117.33  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=77.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~   80 (221)
                      +.+.|+++|++++|||||+|+|++......  .+.+.|.........+.                 ....+.+|||||+.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            346899999999999999999998865322  12223332111111110                 11248899999975


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+.           ......+..+|++++|+|+++....++...+..++..     ..|+++++||+|+..
T Consensus        81 ~f~-----------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        81 AFT-----------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP  135 (590)
T ss_pred             hHH-----------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence            432           1222345678999999999987877777777666542     237999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.55  E-value=7.1e-14  Score=117.38  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+..+|+++|+.++|||||+++|++......                             .....+.|.........+ 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            34568999999999999999999985432111                             011356777777777777 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                      .+..+.+|||||+.++.           ..+...+..+|++++|+|+++  .........+..+.. ++.   +++++++
T Consensus        82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi  146 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI  146 (425)
T ss_pred             CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence            78899999999975432           112223467899999999987  565666565555543 232   3689999


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||+|+..
T Consensus       147 NK~Dl~~  153 (425)
T PRK12317        147 NKMDAVN  153 (425)
T ss_pred             Ecccccc
Confidence            9999864

>cd01892 Miro2 Miro2 subfamily

Probab=99.55  E-value=1.8e-13  Score=100.85  Aligned_cols=118  Identities=14%  Similarity=-0.005  Sum_probs=71.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|.+|+|||||++++++.........+ ..........+.+ .+  ..+.++|++|...+....         
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~---------   71 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN---------   71 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc---------
Confidence            4588999999999999999999987753111111 1111122223333 33  467789999976532211         


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ...+..+|++++|+|++++.+...  ..+++... ......|+++|+||+|+..
T Consensus        72 --~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~  122 (169)
T cd01892          72 --DAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDE  122 (169)
T ss_pred             --hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEcccccc
Confidence              134577899999999975432222  12222222 1112458999999999754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.55  E-value=5.4e-14  Score=106.25  Aligned_cols=143  Identities=15%  Similarity=0.008  Sum_probs=85.9

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        25 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      +|..|||||||+++++....... .   .+|.....  ..+.+. ....+.+|||||...+.           .....++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~-~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~-----------~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKK-Y---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG-----------GLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCC-C---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hhhHHHh
Confidence            69999999999999986543211 1   12222222  222221 24578899999975432           2333567


Q ss_pred             CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh-hhHHHHhcccCCchhhhhHHHHHhH
Q 027618          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      +.++++++|+|++++.+... ..|++.+.+...   ..|+++|+||+|+..... ....++.....-.++..|+....++
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v  142 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNF  142 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            88899999999997665554 467777776532   348999999999753111 1111232222233445566555555


Q ss_pred             HHHHHh
Q 027618          180 QFEVDS  185 (221)
Q Consensus       180 ~~~~~~  185 (221)
                      .+.++.
T Consensus       143 ~~~F~~  148 (200)
T smart00176      143 EKPFLW  148 (200)
T ss_pred             HHHHHH
Confidence            555554

Ran is involved in the active transport of proteins through nuclear pores.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.54  E-value=8.1e-14  Score=106.63  Aligned_cols=115  Identities=22%  Similarity=0.315  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------CCceEEEEeC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT   76 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt   76 (221)
                      +.|+++|+.++|||||+++|+........              ....+.|.........|.         .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            47899999999999999999765421110              111233433333333331         1567889999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ||..++.           ..+..++..+|++++|+|+.++.+.+....++...+. +    .|+++++||+|+.
T Consensus        81 PG~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence            9987643           2233455667999999999988887777666665542 2    3799999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.54  E-value=9.5e-14  Score=104.97  Aligned_cols=115  Identities=23%  Similarity=0.276  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +|+++|.+|+|||||++++++...... ....  +.......+.+ .+  ..+.++||||...+..           ...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~-----------~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK-YRRT--VEEMHRKEYEV-GGVSLTLDILDTSGSYSFPA-----------MRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc-CCCc--hhhheeEEEEE-CCEEEEEEEEECCCchhhhH-----------HHH
Confidence            489999999999999999998765321 1111  11112223333 34  4688999999765321           122


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|+++..+... ..++..+.+.... ...|+++|+||+|...
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  118 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE  118 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence            35677899999999985544443 4444555554332 2358999999999865

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.54  E-value=1.9e-13  Score=96.14  Aligned_cols=156  Identities=15%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...++|+++|.+|+|||||+-+.+...+.+..+.+.+.........+.- +..++.+|||+|...|           +..
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-----------RtL   76 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-----------RTL   76 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-----------hcc
Confidence            3458999999999999999999887765333333334444444444433 4567899999996543           345


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~  172 (221)
                      .+.+++++.++|+|+|++.+-+... ..|++.+.-..-.+ ..-.++|.||+|+-.+..   +.-.+|.++..--++..+
T Consensus        77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~S  155 (209)
T KOG0080|consen   77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECS  155 (209)
T ss_pred             CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcc
Confidence            5578899999999999986554443 45666665543322 123679999999764222   222345543222233356


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      ++.-+..+..+++
T Consensus       156 Akt~~~V~~~Fee  168 (209)
T KOG0080|consen  156 AKTRENVQCCFEE  168 (209)
T ss_pred             hhhhccHHHHHHH
Confidence            6665555555554

>PLN00023 GTP-binding protein; Provisional

Probab=99.53  E-value=2.1e-13  Score=108.42  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------CCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~liDtPG~~~   81 (221)
                      .....+|+++|..|||||||++.+++.........+.+.+.  ....+.+.              ....+.||||+|...
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            33448999999999999999999997764222111222221  11222221              124588999999654


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccccEEEEEecCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGGDEL  150 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~ivv~tk~D~~  150 (221)
                      +           ..+....++.++++|+|+|++++-+... ..|++.+......          ....|++||+||+|+.
T Consensus        96 f-----------rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~  164 (334)
T PLN00023         96 Y-----------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA  164 (334)
T ss_pred             h-----------hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence            3           2344466888999999999986555444 5677777665210          0124799999999975


Q ss_pred             C
Q 027618          151 E  151 (221)
Q Consensus       151 ~  151 (221)
                      .
T Consensus       165 ~  165 (334)
T PLN00023        165 P  165 (334)
T ss_pred             c
Confidence            4

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.53  E-value=1.8e-13  Score=118.37  Aligned_cols=115  Identities=20%  Similarity=0.278  Sum_probs=85.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (221)
                      +.|+++|+.++|||||+++|+.......              .....+.|.......+.| .+..+.+|||||+.+|.  
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~--   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG--   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence            6899999999999999999986422100              012346777777778888 89999999999986532  


Q ss_pred             chHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                           .    .+...+..+|++++|+|+.+....+...++..+.+. +    .|.++++||+|+..
T Consensus        79 -----~----ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~  130 (594)
T TIGR01394        79 -----G----EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS  130 (594)
T ss_pred             -----H----HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence                 2    223445567999999999877777777777776653 2    36899999999864

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.53  E-value=3.4e-13  Score=118.28  Aligned_cols=117  Identities=16%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .+.+.|+++|+.++|||||+++|++.......  ..+.|.....+...+.   .+..+.||||||+.++           
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-----------  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-----------  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------
Confidence            45689999999999999999999887653322  2334444333443332   2478999999997532           


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .......+..+|++++|++++++..++....+..+...     ..|+++++||+|+..
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~~  361 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-----NVPIIVAINKIDKAN  361 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-----CceEEEEEECCCccc
Confidence            12223345677999999999888777776666655432     237999999999875

>PRK12735 elongation factor Tu; Reviewed

Probab=99.52  E-value=2.6e-13  Score=112.76  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      .+..+|+++|+.++|||||+++|++....              .......+.|.......+.+ .+..+.++||||+.  
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~--   86 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA--   86 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence            45589999999999999999999863110              01112345666655555544 66789999999963  


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               ++...+...+..+|++++|+++.+....++.+.+..+... +.   +++++++||+|+..
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi---~~iivvvNK~Dl~~  142 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVD  142 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CeEEEEEEecCCcc
Confidence                     2334444556678999999999877777777666665542 32   23557899999874

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.52  E-value=9.1e-13  Score=113.99  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=76.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGL   79 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~   79 (221)
                      .+++.|+++|++++|||||+|+|.+.......  ..+.|........++.                 .-..+.+|||||.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            35578999999999999999999887643221  2222222111111110                 0012789999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .++.           .........+|++++|+|+++....+....+..+...     ..|+++++||+|+.
T Consensus        82 e~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~  136 (586)
T PRK04004         82 EAFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI  136 (586)
T ss_pred             HHHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence            6542           1112344667999999999977777777777666542     23799999999975

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.52  E-value=2.3e-13  Score=120.44  Aligned_cols=121  Identities=20%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (221)
                      +....++|+++|+.++|||||+|+|+........                ....+.|.........| .+..+.++||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG   84 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG   84 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence            3445689999999999999999999753321100                01246677777778888 889999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      +.++..       +    +..++..+|++++|+|+.+....++...+..+.+.     ..|+++++||+|+...
T Consensus        85 ~~~~~~-------~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFTV-------E----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CcchhH-------H----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            976431       1    22344566999999999888888777777766543     2378899999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.52  E-value=6.5e-13  Score=99.71  Aligned_cols=126  Identities=23%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeeEEEEEEe-eCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFVG   90 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~~   90 (221)
                      .+.|+++|.+|.||||++|.+.......+...     +.+.|+......... .++  -+++++|||||+|.-. ++..|
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW  124 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW  124 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence            47899999999999999999987665432211     222333333222222 123  3688999999998643 44455


Q ss_pred             HHHHHHHHhhc------------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           91 KEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        91 ~~~~~~~~~~~------------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +-+.+++...+                  ..+|+++|.+..+ ..+++.|.++++.|.+.      .+++-|+.|+|.+.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence            55555544322                  3579999999885 56899999999988885      26899999999876

>PRK00007 elongation factor G; Reviewed

Probab=99.52  E-value=1.9e-13  Score=120.91  Aligned_cols=121  Identities=19%  Similarity=0.265  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ....++|+++|+.++|||||+++|+........                ....+.|.........| .+..+.++||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            455689999999999999999999742211000                02345677777777778 8899999999997


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      .++.       .+    +..++..+|++++|+|+.+....++...+..+.+. +    .|.++++||+|+...+
T Consensus        86 ~~f~-------~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDFT-------IE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHH-------HH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence            6421       22    33444566999999999888899988888887764 3    3678999999988643

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.52  E-value=1.8e-13  Score=101.16  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||++++++....... .+...  ........+ .+  ..+.+|||||......           ..
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-~~t~~--~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF--ENYVADIEV-DGKQVELALWDTAGQEDYDR-----------LR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccc--cceEEEEEE-CCEEEEEEEEeCCCchhhhh-----------cc
Confidence            68999999999999999999987653221 11111  111122333 33  3578999999754221           11


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|++++++-+...  ..|+..++....   ..|+++|+||.|...
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  119 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN  119 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhccc
Confidence            134577899999999985543333  235555554322   348999999999764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.52  E-value=1.9e-13  Score=106.40  Aligned_cols=124  Identities=20%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|++||-|+||||||+|+|...+.  .......+|..++...+.+.....+++-|.||+....+.+.-+...+.+.+..|
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            468999999999999999998775  223455678888888888856667999999999998888888888899888887


Q ss_pred             cCCCcEEEEEEeCCCCC--CHHH-H-HHHHHHHHHhcc-cccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRF--SQEE-E-AALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~--~~~~-~-~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (221)
                          +.++||+|++...  ++-+ . .....+. .+.. -..+|.++|.||+|..+
T Consensus       276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe-~yek~L~~rp~liVaNKiD~~e  326 (366)
T KOG1489|consen  276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELE-LYEKGLADRPALIVANKIDLPE  326 (366)
T ss_pred             ----ceEEEEEECCCcccCCHHHHHHHHHHHHH-HHhhhhccCceEEEEeccCchh
Confidence                7999999998441  3222 2 2222222 2222 23457999999999854

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.52  E-value=6.1e-13  Score=95.97  Aligned_cols=116  Identities=23%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||+|++++... ... ...+.+.......... .+  ..+.+|||||..++.           ...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-cCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence            6899999999999999999998873 222 2233444444433444 55  678899999965421           111


Q ss_pred             HhhcCCCcEEEEEEeCCCC-CCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSR-FSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ......++.+++++|.... .+...  ..+...+......  ..|+++++||+|+..
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD  122 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence            1223344677777776533 22211  2344444443222  348999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.51  E-value=3.4e-13  Score=102.24  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ++|+++|++|+|||||++.|++........+     ..........   ..+..+.+|||||...+           ...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence            3689999999999999999998754322211     1122222222   13567999999997532           222


Q ss_pred             HHhhcCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~-~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~  151 (221)
                      +...++.+ ++++||+|+.+.. .......+++.+.+.    .....|+++++||.|+..
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            23344555 9999999998442 222222333322211    112458999999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.51  E-value=2.4e-13  Score=99.09  Aligned_cols=144  Identities=20%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||+++++....... ..+.+   ......+.. .+  ..+.+|||+|...     .          
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~---~~~~~~i~~-~~~~~~l~i~D~~g~~~-----~----------   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEG---GRFKKEVLV-DGQSHLLLIRDEGGAPD-----A----------   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCc---cceEEEEEE-CCEEEEEEEEECCCCCc-----h----------
Confidence            3689999999999999998876554222 11111   111123334 44  4588999999753     1          


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC--C---hhhHHHHhccc-CCchhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED--N---DETLEDYLGRE-CPKPLK  170 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~--~---~~~~~~~l~~~-~~~~l~  170 (221)
                       .....+|++++|+|.+++-+... ..|++.+..... ....|+++|+||.|+...  .   ....+++.++. .-.++.
T Consensus        61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e  138 (158)
T cd04103          61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE  138 (158)
T ss_pred             -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence             13356799999999997777666 567777766532 123489999999986421  1   11223344322 234555


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.+..
T Consensus       139 ~SAk~~~~i~~~f~~  153 (158)
T cd04103         139 TCATYGLNVERVFQE  153 (158)
T ss_pred             EecCCCCCHHHHHHH
Confidence            677766666666654

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04167 Snu114p Snu114p subfamily

Probab=99.51  E-value=1.9e-13  Score=104.47  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------cCCCCcceeeEEEEEEee----CCceEEEEeCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG   78 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG   78 (221)
                      ++|+++|+.|+|||||+++|++.......                 ....+.+.........+.    ....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            46899999999999999999875432210                 011223332222333221    235789999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ..++.           ......+..+|++++|+|+.+..+.....+++.+...     ..|+++|+||+|+.
T Consensus        81 ~~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-----GLPIVLVINKIDRL  136 (213)
T ss_pred             CcchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            87642           1222344567999999999867766655555544321     14799999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK09866 hypothetical protein; Provisional

Probab=99.51  E-value=8.6e-13  Score=112.37  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      .+++|+||||+.....  ..+.+.+.+    .+..+|+|+||+|+....+..+...++.+++. +.  ..|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence            5789999999986321  223333333    46667999999999867888888888888764 32  137999999999


Q ss_pred             CCCCC---hhhHHHHhc
Q 027618          149 ELEDN---DETLEDYLG  162 (221)
Q Consensus       149 ~~~~~---~~~~~~~l~  162 (221)
                      ..+..   .+.+.+++.
T Consensus       301 l~dreeddkE~Lle~V~  317 (741)
T PRK09866        301 QQDRNSDDADQVRALIS  317 (741)
T ss_pred             CCCcccchHHHHHHHHH
Confidence            86422   244555543

>PLN03127 Elongation factor Tu; Provisional

Probab=99.51  E-value=4.8e-13  Score=112.37  Aligned_cols=121  Identities=15%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCccc----------c----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF----------K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~----------~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      ...+..+|+++|+.++|||||+++|++....          .    ......+.|.......+.+ .+.++.++||||+.
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~  135 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA  135 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence            3456689999999999999999999743110          0    0112256677766666655 66789999999985


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++       ...+.    .....+|++++|+|+.+....++.+.+..+... +.+   .+++++||+|+..
T Consensus       136 ~f-------~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~  191 (447)
T PLN03127        136 DY-------VKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVD  191 (447)
T ss_pred             ch-------HHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCC
Confidence            31       22222    233457999999999878888888888777654 321   3678999999875

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.51  E-value=3.4e-13  Score=101.56  Aligned_cols=116  Identities=17%  Similarity=-0.003  Sum_probs=72.2

Q ss_pred             CeEEEEEcCCCCCHHHHHH-HHhCCcccccc-cCCCCccee----eEEE---------EEEeeCCceEEEEeCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTST----CEMQ---------RTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin-~l~~~~~~~~~-~~~~~~t~~----~~~~---------~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      ..+|+++|.+|+|||||+. .+++....... .....+|..    ....         .+.. ....+.+|||+|.... 
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~-~~v~l~iwDTaG~~~~-   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG-VSVSLRLWDTFGDHDK-   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCC-EEEEEEEEeCCCChhh-
Confidence            3689999999999999995 55543321110 000111221    0000         1111 2357889999997531 


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               +   ...+++.+|++++|+|++++.+....  .|++.++....   ..|+++|+||+|+..
T Consensus        80 ---------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~  134 (195)
T cd01873          80 ---------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY  134 (195)
T ss_pred             ---------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence                     0   12367889999999999877666553  47777766532   348999999999753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.51  E-value=3.4e-13  Score=112.06  Aligned_cols=118  Identities=16%  Similarity=0.187  Sum_probs=84.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      .+..+|+++|+.++|||||+++|++.....              ......+.|.......+.+ .+..+.++||||+.  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~--   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence            455899999999999999999998732100              0111345666655555544 56789999999964  


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE-EEEEecCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFTGGDELE  151 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~tk~D~~~  151 (221)
                               .+...+...+..+|++++|+|+.+....++...+..+... +.    |. ++++||+|+..
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~  142 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVD  142 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcc
Confidence                     2334444556788999999999878888888888777654 32    44 56899999874

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.50  E-value=3e-13  Score=104.87  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH-HHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~   95 (221)
                      .....|+++|.+++|||||.|.++|.++....  ....|+.+....+-.....+++|+||||+......... ....+.+
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            34579999999999999999999999986553  34445555544444436779999999999875433332 2223334


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+.+...+|.+++|+|+.+.-.......+..+.+..    ..|.++|+||.|...
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k  199 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLK  199 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh----cCCceeeccchhcch
Confidence            4566778889999999998533333456666666652    237899999999875

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.50  E-value=8.6e-13  Score=114.73  Aligned_cols=116  Identities=22%  Similarity=0.305  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .|+++|+.++|||||+++|+|...... .....+.|..........+.+..+.+|||||+.+           +...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence            689999999999999999998653211 1223466666655555443567789999999632           2233344


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+|++++|+++++...+++.+.+..+... +.   ++++||+||+|+..
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~  118 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVD  118 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCC
Confidence            56778999999999988888888777766543 42   24789999999875

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.50  E-value=1.1e-12  Score=104.41  Aligned_cols=128  Identities=24%  Similarity=0.309  Sum_probs=87.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeeEEEEEEee-C--CceEEEEeCCCCCCCCCCch
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~~   87 (221)
                      +-.++|+++|++|.||||++|+|++.......    ..+  ...+........... +  ...++++||||++++-.. .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s   99 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-S   99 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-c
Confidence            44689999999999999999999998542221    111  123333333333221 2  246889999999986443 4


Q ss_pred             HHHHHHHHHHHhhc------------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           88 FVGKEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        88 ~~~~~~~~~~~~~~------------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..|.-+..++....                  ..+|++||.+..+ +.+++.|..+++.|.+.      .++|.|+.|+|
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD  173 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKAD  173 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccc
Confidence            44555554443221                  4579999999864 57999999888888764      27999999999


Q ss_pred             CCC
Q 027618          149 ELE  151 (221)
Q Consensus       149 ~~~  151 (221)
                      .+.
T Consensus       174 ~lT  176 (373)
T COG5019         174 TLT  176 (373)
T ss_pred             cCC
Confidence            986

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.50  E-value=1.4e-13  Score=96.93  Aligned_cols=132  Identities=19%  Similarity=0.191  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|||||||+++|.+.....      ..|....     + .+   .+|||||=+-   ++    ..+...+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~-----~-~~---~~IDTPGEyi---E~----~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE-----Y-YD---NTIDTPGEYI---EN----PRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE-----e-cc---cEEECChhhe---eC----HHHHHHHHH
Confidence            689999999999999999999865411      1122222     2 11   2699999662   12    333444444


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC--CCChhhHHHHhcc-cCCchhhhhHHHH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR-ECPKPLKKGATKL  176 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~l~~-~~~~~l~~~~~~~  176 (221)
                      ....+|++++|.|++++...-...+.        .-+..|++-|+||+|+.  ..+.....++|+. .....|..|+..-
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa--------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFA--------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhh--------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            44567999999999855432222221        22234899999999998  3233445556654 2233344444444


Q ss_pred             HhHHH
Q 027618          177 RDQQF  181 (221)
Q Consensus       177 ~~~~~  181 (221)
                      +.+.+
T Consensus       132 eGi~e  136 (143)
T PF10662_consen  132 EGIEE  136 (143)
T ss_pred             cCHHH
Confidence            44433

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12739 elongation factor G; Reviewed

Probab=99.50  E-value=4.1e-13  Score=118.81  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ....++|+++|+.++|||||+++|+.......                .....+.|.........| .+..+.++||||+
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~   83 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH   83 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence            44568999999999999999999975321100                012346777777777888 8999999999997


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      .++       ..    .+..++..+|++++|+|+.+....++...+..+.+. +    .|.++++||+|+...
T Consensus        84 ~~f-------~~----e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDF-------TI----EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHH-------HH----HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence            542       12    233445566999999999988888888887777653 2    368899999998863

>PRK10218 GTP-binding protein; Provisional

Probab=99.50  E-value=7.7e-13  Score=114.47  Aligned_cols=116  Identities=19%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccc-c-------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-S-------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      .++|+++|+.++|||||+++|+...... .             .....+.|.......+.| .+..+.+|||||..++..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~   83 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG   83 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence            4899999999999999999999643211 1             012345666666677777 888999999999876532


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                 .+..+++.+|++++|+|+.+....+....+..+.+. +    .|.++++||+|+..
T Consensus        84 -----------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~  134 (607)
T PRK10218         84 -----------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPG  134 (607)
T ss_pred             -----------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCC
Confidence                       223455677999999999877777777777666543 2    36789999999864

>PRK12736 elongation factor Tu; Reviewed

Probab=99.50  E-value=5.6e-13  Score=110.75  Aligned_cols=120  Identities=16%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+..+|+++|+.++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~   87 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence            4456899999999999999999998742110              0111345666655444444 567899999999542


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                 +...+......+|++++|+|+.+....++...+..+... +.   +++++++||+|+..
T Consensus        88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~  142 (394)
T PRK12736         88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVD  142 (394)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcc
Confidence                       222333344677999999999877888887777776654 32   24789999999874

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.49  E-value=1.3e-12  Score=113.26  Aligned_cols=115  Identities=22%  Similarity=0.273  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .|+++|+.++|||||+++|+|..... ......+.|.........+ .+..+.+|||||..+           +...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence            68999999999999999999854211 1112345666666666666 668899999999532           2333444


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..+|++++|+|+++...++..+.+..+.. .+.   +++++|+||+|+..
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~  117 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVN  117 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCC
Confidence            5677899999999997777777766665543 232   24999999999875

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.49  E-value=6.8e-13  Score=113.44  Aligned_cols=119  Identities=16%  Similarity=0.180  Sum_probs=82.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeeEEEEEEeeCCceEEEEe
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVID   75 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liD   75 (221)
                      ....++|+++|+.++|||||+++|+.......  +                  ....+.+.........| .+..+.++|
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliD   86 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLD   86 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEE
Confidence            34568999999999999999999864321110  0                  01124455555566777 888999999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      |||+.++.           ..+..++..+|++++|+|+.+........+++.++..     ..|+++++||+|+..
T Consensus        87 TPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~  146 (527)
T TIGR00503        87 TPGHEDFS-----------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDI  146 (527)
T ss_pred             CCChhhHH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccC
Confidence            99986432           2223345667999999999877777766666554431     247999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.49  E-value=6.6e-13  Score=110.40  Aligned_cols=120  Identities=16%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccc----------c----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAF----------K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~----------~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+..+|+++|+.++|||||+++|++....          .    ......+.|.......... .+..+.++||||+.+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence            455699999999999999999999853110          0    0111245666655544444 567899999999753


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +           ...+......+|++++|+|+.+....++.+.+..+... +.   +++++++||+|+..
T Consensus        88 f-----------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        88 Y-----------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVD  142 (394)
T ss_pred             H-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCC
Confidence            2           12223344567999999999977877777777776543 32   24667899999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.48  E-value=4e-13  Score=113.75  Aligned_cols=123  Identities=12%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEE
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQ   61 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~   61 (221)
                      .+......+|+++|+.++|||||+++|+........                               ....+.|......
T Consensus        21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~  100 (474)
T PRK05124         21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR  100 (474)
T ss_pred             hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence            334567799999999999999999999866432111                               0112455566555


Q ss_pred             EEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEE
Q 027618           62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        62 ~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i  141 (221)
                      ...+ .+..+.++||||+.+           +...+...+..+|++++|+|+.+....++...+..+.. ++.   ++++
T Consensus       101 ~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iI  164 (474)
T PRK05124        101 YFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLV  164 (474)
T ss_pred             Eecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceE
Confidence            5666 677899999999532           22222233477799999999987776666555444443 342   3689


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +++||+|+..
T Consensus       165 vvvNKiD~~~  174 (474)
T PRK05124        165 VAVNKMDLVD  174 (474)
T ss_pred             EEEEeecccc
Confidence            9999999874

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.48  E-value=6.6e-13  Score=101.66  Aligned_cols=120  Identities=20%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|||||||++.++..........+.+............ ....+.++||||...+.           ..
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~i~i~~~Dt~g~~~~~-----------~~   74 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC-GPICFNVWDTAGQEKFG-----------GL   74 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-eEEEEEEEECCCchhhh-----------hh
Confidence            3458999999999999999976544333211111111111111111111 33578899999965421           11


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..++++++|+|++++.+... ..|+..+.+...   ..|+++++||+|...
T Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         75 RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKD  127 (215)
T ss_pred             hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCcc
Confidence            1234456799999999986665544 455555554422   247889999999753

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.48  E-value=2.8e-13  Score=97.42  Aligned_cols=156  Identities=12%  Similarity=0.078  Sum_probs=101.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..++|+++|.+|+|||||+|.+...++......+.+..-......+.- ....+.+|||.|...|..           .-
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQERFqs-----------Lg   75 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQERFQS-----------LG   75 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHHhhh-----------cc
Confidence            348999999999999999999998876443333333333333333332 445688999999765432           22


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHH-HHHhc-ccccccEEEEEecCCCCCCC-----hhhHHHHhcc-cCCch
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSL-QTLFG-KKIFDYMIVVFTGGDELEDN-----DETLEDYLGR-ECPKP  168 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l-~~~~~-~~~~~~~ivv~tk~D~~~~~-----~~~~~~~l~~-~~~~~  168 (221)
                      ...++++|..++|++++..-+.+. ..|-+.+ ...-. .+-.-|++|++||.|.-...     ....+++.+. ....+
T Consensus        76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy  155 (210)
T KOG0394|consen   76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY  155 (210)
T ss_pred             cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCcee
Confidence            357899999999999985544443 3333333 33221 23344899999999975421     2345666644 44556


Q ss_pred             hhhhHHHHHhHHHHHHh
Q 027618          169 LKKGATKLRDQQFEVDS  185 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~~  185 (221)
                      +..+++...+..+.++.
T Consensus       156 fEtSAK~~~NV~~AFe~  172 (210)
T KOG0394|consen  156 FETSAKEATNVDEAFEE  172 (210)
T ss_pred             EEecccccccHHHHHHH
Confidence            77888887777777665

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.47  E-value=2.5e-13  Score=97.07  Aligned_cols=113  Identities=21%  Similarity=0.205  Sum_probs=69.0

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      ++|++|+|||||+|++++.........+   |. .........   ....+.++|+||.....           ......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~---t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYET---TI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCccccc---ch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence            5799999999999999988752121111   11 222222221   25678999999976422           111345


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+.+|++++|+++....+......+.............|+++++||+|...
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~  116 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE  116 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence            677899999999985444443322201111112233458999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04129 Rho2 Rho2 subfamily

Probab=99.47  E-value=8.1e-13  Score=98.99  Aligned_cols=113  Identities=18%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||+++++....... ..+  ...........+ .+  ..+.++||||...+....           
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~-----------   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-YHP--TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR-----------   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC--cccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence            5899999999999999999985544221 111  111111122222 32  357899999976432211           


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ...+..+|++++|+++++.-+...  ..|+..++....   ..|+++|+||+|+.
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~  118 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR  118 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence            124567899999999985444333  356777765433   25899999999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.8e-13  Score=109.21  Aligned_cols=131  Identities=17%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+..|+++|+|++|||||+|+|+........ ...|+|.......+.. +|.+++++||+|+-+.  ..+.+...-...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~--~~~~iE~~gI~r  341 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREE--SNDGIEALGIER  341 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEeccccccc--cCChhHHHhHHH
Confidence            34589999999999999999999998875554 3557788877777777 9999999999999872  122222222233


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHH-hccccc------ccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKIF------DYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~-~~~~~~------~~~ivv~tk~D~~~  151 (221)
                      .......+|++++|+|+....+.++....+.+... -|....      .+++++.||.|...
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s  403 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS  403 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence            33455677999999999655555554444444332 121222      57999999999875

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.47  E-value=1.1e-12  Score=112.03  Aligned_cols=120  Identities=15%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (221)
                      ...++|+++|+.++|||||.++|+.......  +                  ....+.+.........| ++..+.+|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            4568999999999999999999874221100  0                  01123444455556677 8889999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ||..++.       .+    +..++..+|++++|+|+.+........+++.....     ..|+++++||+|+...+
T Consensus        87 PG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         87 PGHEDFS-------ED----TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CCchhhH-------HH----HHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence            9987543       11    22344567999999999877777666666555432     24799999999987533

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.47  E-value=9.4e-14  Score=97.39  Aligned_cols=153  Identities=18%  Similarity=0.128  Sum_probs=105.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++++++|..-+|||||+-..+...+.....++...........+.- ....+.+|||+|...|..-           =+
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfHAL-----------GP   80 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFHAL-----------GP   80 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhhcc-----------Cc
Confidence            48999999999999999988887665433322211111112222222 4456889999997654321           13


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      .++++.++.|+|+|++++-+.+. +.|+..|+..+|..+  .++||.||.|+-++.   .+..+.|.......+...+++
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk  158 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAK  158 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccc
Confidence            56788999999999998887777 789999999999876  689999999976432   234566766544445567777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      +-..+.++++.
T Consensus       159 ~N~Gi~elFe~  169 (218)
T KOG0088|consen  159 DNVGISELFES  169 (218)
T ss_pred             cccCHHHHHHH
Confidence            76677666665

>PLN03126 Elongation factor Tu; Provisional

Probab=99.47  E-value=1.7e-12  Score=109.76  Aligned_cols=120  Identities=15%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+..+|+++|+.++|||||+++|++.....              ......+.|.........+ .+..+.++||||+.+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence            4556889999999999999999998632110              1122345566555555556 778999999999643


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                 +...+...+..+|++++|+|+.+....+..+.+..+... |.   +++++++||+|+..
T Consensus       157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~  211 (478)
T PLN03126        157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD  211 (478)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC
Confidence                       222333444577999999999988888887777766543 43   24889999999875

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.46  E-value=1.1e-12  Score=113.77  Aligned_cols=117  Identities=22%  Similarity=0.242  Sum_probs=77.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc------c-------cCCCCcceeeEEEEEEee--C--CceEEEEeCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS------R-------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   81 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~------~-------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~   81 (221)
                      .++|+++|+.++|||||+++|+.......      .       ....+.|.........|.  .  ...+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            47899999999999999999987532111      0       012355555554555452  1  25789999999876


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.           ..+..++..+|++++|+|+++..+.++...+....+   .  ..|+++|+||+|+..
T Consensus        83 F~-----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~  136 (595)
T TIGR01393        83 FS-----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPS  136 (595)
T ss_pred             HH-----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCc
Confidence            42           122334556799999999987777766544433332   1  237999999999754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.45  E-value=9.7e-13  Score=97.51  Aligned_cols=127  Identities=16%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|+.||||||+++.|.......     ..+|.......+.+ .+..+.++|.+|-...           +..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~-----------~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESF-----------RPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGG-----------GGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccc-----------ccc
Confidence            566899999999999999999998765422     23355556666777 8889999999996432           133


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (221)
                      +..+++.+|+++||+|..+.-..  .+..+.|.+.+...  ...|++|++||.|.... ....+.+++.
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~l--~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~  141 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPERL--QEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG  141 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGGH--HHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred             ceeeccccceeEEEEecccceee--cccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence            44567888999999999853322  22333344443321  23589999999997652 2344555553

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.45  E-value=1.5e-12  Score=99.95  Aligned_cols=115  Identities=19%  Similarity=0.256  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEeeCCceE
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQVV   71 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~   71 (221)
                      .|+++|+.++|||||+.+|+......                             ......+.|.........+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            47999999999999999986432110                             0112345666666677777 88899


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                      .++||||+.++           ...+...+..+|++++|+|+.+.       ...+....+.... ..+   .+|+++++
T Consensus        80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence            99999996432           12222345667999999999863       2223333333332 222   24789999


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||+|+..
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.7e-12  Score=110.78  Aligned_cols=121  Identities=23%  Similarity=0.301  Sum_probs=89.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|+|++||||++|+|+|.+....  .-.|.|.........+ .+..+.++|.||.++......  .+.+.+-..
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~--DE~Var~~l   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSE--DEKVARDFL   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCc--hHHHHHHHH
Confidence            36799999999999999999999986433  4567888888888888 888899999999997543322  223332221


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                       ....+|+++-|+|+. .+..+..-.++.+ +. |    .|+++++|.+|..+.
T Consensus        78 -l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E~-g----~p~ilaLNm~D~A~~  123 (653)
T COG0370          78 -LEGKPDLIVNVVDAT-NLERNLYLTLQLL-EL-G----IPMILALNMIDEAKK  123 (653)
T ss_pred             -hcCCCCEEEEEcccc-hHHHHHHHHHHHH-Hc-C----CCeEEEeccHhhHHh
Confidence             136779999999998 6655555554443 32 2    369999999998753

>PRK13351 elongation factor G; Reviewed

Probab=99.44  E-value=1.6e-12  Score=115.26  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=85.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-------c---------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      ...++|+++|+.|+|||||+++|+.......       +         ....+.|.........| .+..+.+|||||..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence            3458999999999999999999985421100       0         01234555666667777 88899999999986


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ++.           ..+..++..+|++++|+|+.+.........++.+...     ..|+++++||+|+...
T Consensus        85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence            532           2233455667999999999878877777666665443     2378999999998864

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=4.6e-12  Score=88.48  Aligned_cols=151  Identities=16%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      -.+++++|+.|.|||.|+..............+.+.........+.. +..++.+|||+|.           +.++...+
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQ-----------ErFRSVtR   76 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQ-----------ERFRSVTR   76 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccH-----------HHHHHHHH
Confidence            36899999999999999999887665433333333333333344433 5568999999994           45667777


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhh---HHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET---LEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~---~~~~l~~~~~~~l~~~~~  174 (221)
                      .+++++.+.++|+|++.+-+.+. ..|+...+-+....  ..++++.||.|+......+   ...|.+++.-.++..++.
T Consensus        77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~  154 (214)
T KOG0086|consen   77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL  154 (214)
T ss_pred             HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccc
Confidence            88999999999999986666554 56666666553333  2577888999976533322   234555443344445554


Q ss_pred             HHHhHHHHH
Q 027618          175 KLRDQQFEV  183 (221)
Q Consensus       175 ~~~~~~~~~  183 (221)
                      ..++..+.+
T Consensus       155 TGeNVEEaF  163 (214)
T KOG0086|consen  155 TGENVEEAF  163 (214)
T ss_pred             ccccHHHHH
Confidence            444444433

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.43  E-value=6.1e-12  Score=96.63  Aligned_cols=116  Identities=20%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccc------------CCCCccee------------------------eEEEEEE
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRA------------SSSGVTST------------------------CEMQRTV   64 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~------------~~~~~t~~------------------------~~~~~~~   64 (221)
                      +|+++|+.++|||||++.++.........            ...+.|..                        .......
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            47899999999999999998543211000            00111110                        0001122


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                      . .+..+.++||||+.++       .+.....+..  ..+|++++|++++......+...+.++... +    .|+++|+
T Consensus        81 ~-~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvv  145 (224)
T cd04165          81 K-SSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVV  145 (224)
T ss_pred             e-CCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEE
Confidence            2 5678999999996432       2222222111  357999999999888898888888888764 3    3689999


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||+|+..
T Consensus       146 NK~D~~~  152 (224)
T cd04165         146 TKIDLAP  152 (224)
T ss_pred             ECccccC
Confidence            9999876

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=9.5e-12  Score=86.37  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=79.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE-EeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT-VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +-..++.++|.+.+||||++.+.++......-.++-+..-  ....+ .......+.+|||.|...           ++.
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidF--KvKTvyr~~kRiklQiwDTagqEr-----------yrt   85 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF--KVKTVYRSDKRIKLQIWDTAGQER-----------YRT   85 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeE--EEeEeeecccEEEEEEEecccchh-----------hhH
Confidence            4457999999999999999999998876433233333322  22222 111345789999999653           334


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      .....+++++++|+++|..+.-+... +.|+-.++-..-  -..++++|.||||+-.+
T Consensus        86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~e  141 (193)
T KOG0093|consen   86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSE  141 (193)
T ss_pred             HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccc
Confidence            44567789999999999974433333 445555544321  23389999999998764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.43  E-value=4.6e-12  Score=99.88  Aligned_cols=123  Identities=21%  Similarity=0.178  Sum_probs=91.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      |++||-|++|||||++.++..+.-.  .....+|..+....+....+..+++-|.||+.+..+...-+..++.+.+.+| 
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKI--adYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt-  238 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKI--ADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT-  238 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcc--cCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence            5799999999999999999876532  3345677778877777646778999999999987666667888888888888 


Q ss_pred             CCCcEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRSRFS----QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         .+++.|+|++ ...    .++ ..+...|...-..-..+|.+||+||+|...
T Consensus       239 ---~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~  289 (369)
T COG0536         239 ---RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL  289 (369)
T ss_pred             ---heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence               6999999997 322    233 334444544423334568999999999553

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.43  E-value=3.3e-13  Score=110.71  Aligned_cols=133  Identities=22%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 027618           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      +++.....++++++|-+++||||++|.++...+  .......+|....+.+..+ +-..++++||||+.+.......+.+
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence            466677789999999999999999999987764  2222334555555566666 7788999999999985543332222


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                        ..++.....-..++||+.|+++  +.+..+ .+....++.+|...   |.|+|+||+|.+..
T Consensus       238 --mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  238 --MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP  296 (620)
T ss_pred             --HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence              1222212222358899999984  445554 46666777776644   79999999998864

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.42  E-value=5.8e-12  Score=96.55  Aligned_cols=119  Identities=17%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|+.|+|||||++++.+........ +...................+.+|||+|..+           +......
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~~~~   73 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSLRPE   73 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHHHHH
Confidence            899999999999999999999887643332 1111122222222211245688999999653           3345556


Q ss_pred             hcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ...+++++++|++....  .......|.+.+....+.  ..|+++|.||+|+...
T Consensus        74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~  126 (219)
T COG1100          74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE  126 (219)
T ss_pred             HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence            77889999999998742  333336777777766432  2389999999998863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.42  E-value=3.9e-12  Score=106.06  Aligned_cols=116  Identities=15%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEEEEEeeCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVLKDG   68 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~   68 (221)
                      .+|+++|+.++|||||+++|+........                               ....+.|.........+ .+
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            47899999999999999998754321110                               11234556666666666 77


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..+.++||||+.+           +...+...+..+|++++|+|+.+....++.+.+..+... +.   +++++++||+|
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence            8999999999643           222223355677999999999888877776666555543 42   36899999999


Q ss_pred             CCC
Q 027618          149 ELE  151 (221)
Q Consensus       149 ~~~  151 (221)
                      +..
T Consensus       145 ~~~  147 (406)
T TIGR02034       145 LVD  147 (406)
T ss_pred             ccc
Confidence            874

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.42  E-value=3.7e-12  Score=111.87  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------c-----------------cCCCCcceeeEEEEE
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMQRT   63 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~   63 (221)
                      +..+..+|+++|++++|||||+++|+.......              +                 ....+.|........
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            344557899999999999999999987543211              0                 011244555555566


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      .+ .+..+.|+||||+.+       ..    ..+......+|++++|+|+.+....++...+..+... +.   ++++++
T Consensus       100 ~~-~~~~~~liDtPG~~~-------f~----~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv  163 (632)
T PRK05506        100 AT-PKRKFIVADTPGHEQ-------YT----RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA  163 (632)
T ss_pred             cc-CCceEEEEECCChHH-------HH----HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence            66 778899999999642       12    2222345677999999999877776666655555443 32   368899


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||+|+..
T Consensus       164 vNK~D~~~  171 (632)
T PRK05506        164 VNKMDLVD  171 (632)
T ss_pred             EEeccccc
Confidence            99999874

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.41  E-value=4.8e-12  Score=106.38  Aligned_cols=120  Identities=20%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+..+|+++|+.++|||||+++|+.......                             .....+.|.........+ 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            34568999999999999999999985321100                             011235666666666666 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      .+..+.+|||||..+           +...+...+..+|++++|+|++++   ........+..+ ..++.   ++++++
T Consensus        83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv  147 (426)
T TIGR00483        83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA  147 (426)
T ss_pred             CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence            678899999999542           222333345678999999999866   322223322222 22332   379999


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||+|+..
T Consensus       148 iNK~Dl~~  155 (426)
T TIGR00483       148 INKMDSVN  155 (426)
T ss_pred             EEChhccC
Confidence            99999864

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.41  E-value=3e-12  Score=111.05  Aligned_cols=113  Identities=21%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCc
Q 027618           26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH  105 (221)
Q Consensus        26 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (221)
                      |.+|+|||||+|+++|.... .+ ...+.|.........+ ++..+.++||||.++......  .+.+.... .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence            89999999999999998642 22 3445666666666767 777899999999987544321  12222221 1235679


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       106 ~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++++|+|+++ ... ......++.+.     ..|+++++||+|..+
T Consensus        75 vvI~VvDat~-ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        75 LVVNVVDASN-LER-NLYLTLQLLEL-----GIPMILALNLVDEAE  113 (591)
T ss_pred             EEEEEecCCc-chh-hHHHHHHHHhc-----CCCEEEEEehhHHHH
Confidence            9999999983 332 22222333321     248999999999864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=6.3e-12  Score=100.79  Aligned_cols=127  Identities=25%  Similarity=0.272  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cC-CCCcceeeEEEEEEe-eCC--ceEEEEeCCCCCCCCCCchHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----AS-SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV   89 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~-~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~   89 (221)
                      -.++++++|++|.|||||||+|++.......    .. ....|.......... .++  .+++|+||||+++.-.. ...
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn-s~~   98 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN-SNC   98 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc-ccc
Confidence            3489999999999999999999988543220    11 111122222222222 122  36889999999986433 222


Q ss_pred             HHHHH--------HHHHh-------hc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           90 GKEIV--------KCIGM-------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        90 ~~~~~--------~~~~~-------~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++-+.        +++..       ..  ..+|++||.+... .++.+.|..+++.+...      .+++.|+.|+|.+.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence            33232        32211       11  2679999999875 46999998888877663      26999999999986

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.40  E-value=6.2e-12  Score=88.86  Aligned_cols=114  Identities=17%  Similarity=0.230  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|.++|..||||||+++.+.+...     ....+|.-.+..+..+ ++..+.++|.-|.           ..++.++
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHH
Confidence            468999999999999999999999863     3445677788888888 8999999998884           3466777


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-K-IFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~ivv~tk~D~~  150 (221)
                      +.++...|++++|+|..++...++  ....|++.+.. . +-.|++|+.||.|.-
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence            888889999999999987766655  22333333221 2 223799999999976

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.40  E-value=4.9e-12  Score=109.84  Aligned_cols=119  Identities=21%  Similarity=0.252  Sum_probs=78.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEee----CCceEEEEeCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGL   79 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~   79 (221)
                      ...+.|+++|+.++|||||+.+|+........             ....+.|.........|.    ....+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            34589999999999999999999764321100             112345555544455552    1467899999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++.       .+    +..++..+|++++|+|++++...++...+..+.+   .  ..|+++|+||+|+..
T Consensus        85 ~dF~-------~~----v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~  140 (600)
T PRK05433         85 VDFS-------YE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPA  140 (600)
T ss_pred             HHHH-------HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCc
Confidence            7642       12    2234456699999999987777666544443332   1  237999999999764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.6e-12  Score=105.73  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+++.|-++|+-..|||||+.+|-+..+...  ...++|.....+.+..+.|..++|+||||+..|..+..         
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRa---------  219 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRA---------  219 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHh---------
Confidence            4678999999999999999999988876433  46789999999999998999999999999876543322         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  157 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~  157 (221)
                        +-....|.+++|+.++|...++..+.+++.+..     ..|++|.+||+|+-..+.+.+
T Consensus       220 --RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv  273 (683)
T KOG1145|consen  220 --RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKV  273 (683)
T ss_pred             --ccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHH
Confidence              344566999999999999999999999888774     348999999999876544433

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.39  E-value=2.5e-12  Score=100.63  Aligned_cols=88  Identities=19%  Similarity=0.249  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -+++|+|.+++|||||+|.|++..--..  ....+|..+......| ++-.++++|+||+...........+++...   
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv---  137 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSV---  137 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeee---
Confidence            6899999999999999999999874222  3445566666677777 999999999999986444333223333333   


Q ss_pred             hcCCCcEEEEEEeCC
Q 027618          100 AKDGIHAVLVVFSVR  114 (221)
Q Consensus       100 ~~~~~~~il~v~~~~  114 (221)
                       .+.+|++++|+|+.
T Consensus       138 -~R~ADlIiiVld~~  151 (365)
T COG1163         138 -ARNADLIIIVLDVF  151 (365)
T ss_pred             -eccCCEEEEEEecC
Confidence             35569999999965

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=2.2e-12  Score=116.07  Aligned_cols=120  Identities=19%  Similarity=0.230  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------CCceE
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVV   71 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~   71 (221)
                      +....++|+++|+.++|||||+++|++.......              ....+.|.........|.         .+..+
T Consensus        15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i   94 (836)
T PTZ00416         15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI   94 (836)
T ss_pred             CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence            3556789999999999999999999875432111              111233333333334442         14578


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .++||||+.++.           ..+..++..+|++++|+|+.+.+..++...++.+.+.     ..|+++++||+|+.
T Consensus        95 ~liDtPG~~~f~-----------~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         95 NLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA  157 (836)
T ss_pred             EEEcCCCHHhHH-----------HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence            999999987532           2334556778999999999988998888887777653     23799999999987

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=5.5e-12  Score=104.83  Aligned_cols=127  Identities=17%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +.+.|.++|+--.|||||+..|-+.++...  ...+.|.+...+.+.+.  ....++|+||||+..|..+..        
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa--------   73 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA--------   73 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh--------
Confidence            457899999999999999999988887433  46788999998888884  347899999999877643322        


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                         .-..-.|.+++|+++++.+.++..+.+++++..     ..|++|..||+|+...++..+..-++
T Consensus        74 ---RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~  132 (509)
T COG0532          74 ---RGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQ  132 (509)
T ss_pred             ---cCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHH
Confidence               333456999999999999999999999999875     33799999999999755554444443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=1.8e-12  Score=105.13  Aligned_cols=119  Identities=24%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..|+++|.+|+|||||||+|.|..--..+..+.|. .+......+..+....+++||.||.+......+    +..+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~  109 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKE  109 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHH
Confidence            4589999999999999999999875432233333332 122223334444667899999999986443333    22222


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (221)
                      +  .+...|.+|++ ... +++..+....+.+++. |.    ++++|-||+|.
T Consensus       110 ~--~~~~yD~fiii-~s~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~  153 (376)
T PF05049_consen  110 V--KFYRYDFFIII-SSE-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS  153 (376)
T ss_dssp             T--TGGG-SEEEEE-ESS-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred             c--cccccCEEEEE-eCC-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence            1  23445866654 445 8999999888888875 33    69999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01882 BMS1 Bms1

Probab=99.37  E-value=1.5e-11  Score=94.64  Aligned_cols=112  Identities=19%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ..++..|+++|++|+|||||+|.|++...........+.   .  ..... .+..+.++||||..          ..+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i--~i~~~-~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I--TVVTG-KKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---E--EEEec-CCceEEEEeCCchH----------HHHHH
Confidence            466789999999999999999999876321111111111   1  11122 67789999999742          22222


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .    ...+|++++|+|+.......+..++..+.+. +.+   .+++|+||+|...
T Consensus       100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~  147 (225)
T cd01882         100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFK  147 (225)
T ss_pred             H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCC
Confidence            2    3556999999999878888777777777653 322   3566999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.37  E-value=1.4e-11  Score=103.74  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=80.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+..+|+++|+.++|||||+.+|+......                             ......+.|.........+ 
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence            3455899999999999999999887522100                             0012335666666666666 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      .+..+.++||||+.+           +...+...+..+|++++|+|+.+..       ..+..+.+..+... |.+   +
T Consensus        83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~  147 (446)
T PTZ00141         83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---Q  147 (446)
T ss_pred             CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---e
Confidence            788999999999653           2233334456779999999998654       34555555555443 433   5


Q ss_pred             EEEEEecCCC
Q 027618          140 MIVVFTGGDE  149 (221)
Q Consensus       140 ~ivv~tk~D~  149 (221)
                      +++++||+|.
T Consensus       148 iiv~vNKmD~  157 (446)
T PTZ00141        148 MIVCINKMDD  157 (446)
T ss_pred             EEEEEEcccc
Confidence            8899999994

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.36  E-value=2e-12  Score=95.03  Aligned_cols=119  Identities=16%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE-EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...|+++|++|+|||+|+..|.......+..+.     ...... .....+..+.+||+||+..-.       .++...+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence            468999999999999999999877543332221     111111 111245679999999987532       1222221


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~  151 (221)
                      . ..+.+.+|+||+|.. .+...-....+.|...+-.    ....|++|+.||.|...
T Consensus        71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            1 234568999999987 3433445555555554432    23458999999999875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.36  E-value=6.4e-11  Score=85.59  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (221)
                      ....+|+++|+.++||||++..+........     ..+..+   .|.........+..+..+.+++|||...|.     
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~-----   82 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK-----   82 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH-----
Confidence            3457899999999999999999988764322     223333   666677777777344789999999976532     


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc
Q 027618           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR  163 (221)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~  163 (221)
                            -.+....+++.++++++|.+...+......++.+.....    .|++|..||.|+.... .+.+.+++..
T Consensus        83 ------fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~  148 (187)
T COG2229          83 ------FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL  148 (187)
T ss_pred             ------HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence                  333345677889999999886777777777777766422    4899999999987643 4567787764

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.36  E-value=3.3e-12  Score=113.45  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEE----EEEEeeCCceEEEEeC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEM----QRTVLKDGQVVNVIDT   76 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~----~~~~~~~~~~~~liDt   76 (221)
                      +....++|+++|+.++|||||+++|+.....              .......+.|.....    ....+ .+..+.++||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDT   93 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDT   93 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeC
Confidence            3445689999999999999999998753110              000011223333222    12344 6778999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ||+.++.           ..+..++..+|++++|+|+.+....++...++.+.+.     ..|.++++||+|+..
T Consensus        94 PG~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~  152 (720)
T TIGR00490        94 PGHVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI  152 (720)
T ss_pred             CCccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence            9998753           1223455667999999999877777776666654432     225789999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.34  E-value=2.6e-11  Score=101.19  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEee-------------------------CC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK-------------------------DG   68 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~-------------------------~~   68 (221)
                      ...+..+|+++|+.++|||||+.+|++..... ......+.|.........+.                         ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            34455999999999999999999997742110 11112334443322111110                         02


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ..+.++||||..+           +...+......+|++++|+|+.+.. .......+..+.. .+.   +++++|+||+
T Consensus        85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~  149 (411)
T PRK04000         85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKI  149 (411)
T ss_pred             cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEee
Confidence            5789999999532           2223333445679999999998665 5555555555543 232   3689999999


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      |+..
T Consensus       150 Dl~~  153 (411)
T PRK04000        150 DLVS  153 (411)
T ss_pred             cccc
Confidence            9875

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.34  E-value=5.3e-12  Score=113.77  Aligned_cols=121  Identities=19%  Similarity=0.247  Sum_probs=84.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee-------------
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK-------------   66 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-------------   66 (221)
                      .+....++|+++|+.++|||||+++|+........              ....+.|.........|.             
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            34566799999999999999999999865432111              011234444434444442             


Q ss_pred             --CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           67 --DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        67 --~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                        .+..+.++||||+.+|.       .++    ..++..+|+.++|+|+.++...+....++.+.+.     ..|.++++
T Consensus        94 ~~~~~~inliDtPGh~dF~-------~e~----~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~i  157 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFS-------SEV----TAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTV  157 (843)
T ss_pred             CCCceEEEEECCCCHHHHH-------HHH----HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEE
Confidence              25578899999986532       222    3445666999999999989888888877776553     23789999


Q ss_pred             ecCCCC
Q 027618          145 TGGDEL  150 (221)
Q Consensus       145 tk~D~~  150 (221)
                      ||+|+.
T Consensus       158 NK~D~~  163 (843)
T PLN00116        158 NKMDRC  163 (843)
T ss_pred             ECCccc
Confidence            999997

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.33  E-value=2.4e-11  Score=101.44  Aligned_cols=119  Identities=15%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEE--------------e-----------eCCceE
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVV   71 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~   71 (221)
                      +..+|+++|+.++|||||+++|++...... .....+.|.........              .           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            457899999999999999999987532111 01112223222211100              0           014578


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .++||||..+           +...+......+|++++|+|+++.. ..+..+.+..+. .++.   +++++++||+|+.
T Consensus        83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence            9999999642           2222333345679999999998665 555555555443 3332   3689999999987


Q ss_pred             C
Q 027618          151 E  151 (221)
Q Consensus       151 ~  151 (221)
                      .
T Consensus       148 ~  148 (406)
T TIGR03680       148 S  148 (406)
T ss_pred             C
Confidence            5

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.33  E-value=9.9e-12  Score=103.86  Aligned_cols=123  Identities=18%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +....||+++|..|+||||||-+|+....+...+.......-+  .. ..+......++||+.-.+    ..       .
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--ad-vtPe~vpt~ivD~ss~~~----~~-------~   71 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--AD-VTPENVPTSIVDTSSDSD----DR-------L   71 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--Cc-cCcCcCceEEEecccccc----hh-------H
Confidence            4456899999999999999999999888765443322211111  11 122455688999985332    11       3


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCC--CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRF--SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ++....+.+|++++|+.+++.-  ..-...|+-.+++.+|.....|+|+|.||+|...+
T Consensus        72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~  130 (625)
T KOG1707|consen   72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN  130 (625)
T ss_pred             HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence            3334445669999999887433  33347999999999988888899999999998864

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.32  E-value=5.5e-11  Score=91.18  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|+.|+||||..+.+.+...+.. ...-+.|.......+.+.....+.+||.||..++-..-      +.......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence            689999999999999999887654433 23445677777777765355689999999998643220      00011134


Q ss_pred             cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+++++||+|+. +.+...-....+.+..+.......++.+++.|+|.+.
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS  125 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence            57779999999998 3333333333333333333233447999999999886

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.29  E-value=2.2e-11  Score=91.47  Aligned_cols=153  Identities=20%  Similarity=0.116  Sum_probs=93.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|.+|+|||+|....++..+... ..++..........+.. ....+.++||+|..++....+           
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~~~~~~~-----------   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVDG-EVCMLEILDTAGQEEFSAMRD-----------   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEECC-EEEEEEEEcCCCcccChHHHH-----------
Confidence            47899999999999999988777665333 22222233333333332 334677999999655443332           


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH---HHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL---EDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~---~~~l~~~~~~~l~~~~~  174 (221)
                      .+....|++++|++++++.+.+. ..+.+.+.+..+.. ..|+++|+||+|+........   .++.....-.++..+++
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak  148 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAK  148 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeecc
Confidence            45666799999999998888777 45555664443332 358999999999875222222   22222211224455555


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      .-..+.+.+..
T Consensus       149 ~~~~v~~~F~~  159 (196)
T KOG0395|consen  149 LNYNVDEVFYE  159 (196)
T ss_pred             CCcCHHHHHHH
Confidence            44455554443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.5e-11  Score=105.21  Aligned_cols=121  Identities=21%  Similarity=0.253  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCC-ceEEEEeCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDG-QVVNVIDTPG   78 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG   78 (221)
                      ....+.|+++|+..+|||||..+|+........                ....+.|......+..| .+ ..+++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence            445699999999999999999888765432211                11246778888788888 75 9999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      +-||....+           .+++..|+.++|+++.+...++....+++..+.     ..|.++++||+|+...+
T Consensus        86 HVDFt~EV~-----------rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          86 HVDFTIEVE-----------RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccccHHHHH-----------HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence            999763322           455555999999999999999998888888775     23799999999998643

>cd01900 YchF YchF subfamily

Probab=99.28  E-value=2.9e-11  Score=95.04  Aligned_cols=87  Identities=18%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG   85 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~   85 (221)
                      |+++|.+++|||||+|+|++......  ...++|..+....+.++..+                .+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999999876322  33456666666666552221                4899999999865444


Q ss_pred             chHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      .+.+..++...    .+.+|++++|+++.
T Consensus        79 ~~glg~~fL~~----i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSH----IREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence            44444444444    44569999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.28  E-value=5.6e-11  Score=84.03  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+++++|.+-+|||||+...+..+.+.-.-.+.+..-........-....++.+|||+|..           .++...+
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsitk   76 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSITK   76 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHHH
Confidence            47899999999999999999987776332211111111110011111134578899999954           3445555


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++..=++++|+|.+++-+.+. ..|++..+-..+.+...-+.+|.+|+|+....   .+..+.+.+...-.+...++.
T Consensus        77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak  156 (213)
T KOG0091|consen   77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAK  156 (213)
T ss_pred             HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEeccc
Confidence            66677779999999987877776 66777766665644444567899999987532   223344444322223334554


Q ss_pred             HHHhHHHHHH
Q 027618          175 KLRDQQFEVD  184 (221)
Q Consensus       175 ~~~~~~~~~~  184 (221)
                      ..-+.++.+.
T Consensus       157 ~g~NVeEAF~  166 (213)
T KOG0091|consen  157 NGCNVEEAFD  166 (213)
T ss_pred             CCCcHHHHHH
Confidence            4444444443

>PTZ00258 GTP-binding protein; Provisional

Probab=99.27  E-value=5e-11  Score=97.77  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLF   80 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~   80 (221)
                      ....+|+++|.|++|||||+|+|++......  ..+++|..+....+.++.                ...+.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~--n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAE--NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCccccc--CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            3447899999999999999999998875322  335566677776665532                2248999999998


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      ......+.+..++...+    +.+|++++|++..
T Consensus        97 ~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHI----RAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence            64444344555555444    4559999999973

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=6e-11  Score=98.64  Aligned_cols=153  Identities=18%  Similarity=0.213  Sum_probs=104.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeCC---ceEEEEeCCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKDG---QVVNVIDTPG   78 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG   78 (221)
                      |.++.+.++++.+-..|||||..+|+........             ....|+|...+..+..| .+   ..+.+|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPG  134 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCC
Confidence            3355688999999999999999998655432111             13457888888888888 55   6789999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHH
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  158 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (221)
                      +.||..+..           .++..++++|+|+|+.++...+....+-...+. +.    .+|.|+||+|+-..+.+.++
T Consensus       135 HvDFs~EVs-----------Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~adpe~V~  198 (650)
T KOG0462|consen  135 HVDFSGEVS-----------RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPSADPERVE  198 (650)
T ss_pred             cccccceeh-----------ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCCCCHHHHH
Confidence            999986654           344445999999999988887775444333332 22    48999999999877665554


Q ss_pred             HHhcc----cCCchhhhhHHHHHhHHHHHH
Q 027618          159 DYLGR----ECPKPLKKGATKLRDQQFEVD  184 (221)
Q Consensus       159 ~~l~~----~~~~~l~~~~~~~~~~~~~~~  184 (221)
                      .-+.+    ...+.+..+++...+..+.++
T Consensus       199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~  228 (650)
T KOG0462|consen  199 NQLFELFDIPPAEVIYVSAKTGLNVEELLE  228 (650)
T ss_pred             HHHHHHhcCCccceEEEEeccCccHHHHHH
Confidence            43332    333444455554444444433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.26  E-value=7.2e-11  Score=95.84  Aligned_cols=89  Identities=19%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (221)
                      .+|+++|.+++|||||+|+|++.....  ...+++|..+....+.++..                ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            689999999999999999999987422  23345666666655554221                258999999998644


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      ...+.+..++...    ++.+|++++|+++.
T Consensus        81 ~~g~glg~~fL~~----i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLAN----IREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHH----HHhCCEEEEEEeCC
Confidence            4333444444444    45569999999974

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.25  E-value=1.1e-10  Score=95.07  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=83.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCC---cceeeEE---EEEEeeCC----ceE
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSG---VTSTCEM---QRTVLKDG----QVV   71 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~---~t~~~~~---~~~~~~~~----~~~   71 (221)
                      ++....|+++|+.++|||||||++.+..+.+.              ..+..|   .|+.+..   ..+.....    .++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            34568999999999999999999999832211              122334   5666655   33333233    689


Q ss_pred             EEEeCCCCCCCCCCchHHHHH--------------HHHH----HHhhcC-CCcEEEEEE-eCC------CCCCHHHHHHH
Q 027618           72 NVIDTPGLFDFSAGSEFVGKE--------------IVKC----IGMAKD-GIHAVLVVF-SVR------SRFSQEEEAAL  125 (221)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~--------------~~~~----~~~~~~-~~~~il~v~-~~~------~~~~~~~~~~~  125 (221)
                      .++||+|+.+.......-...              +..+    ...... +++..++|. |.+      +.+...+.+++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            999999998632211111111              0000    111222 668888888 653      45777788999


Q ss_pred             HHHHHHhcccccccEEEEEecCCCCC
Q 027618          126 HSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.|++.     ..|+++|+|+.|-..
T Consensus       174 ~eLk~~-----~kPfiivlN~~dp~~  194 (492)
T TIGR02836       174 EELKEL-----NKPFIILLNSTHPYH  194 (492)
T ss_pred             HHHHhc-----CCCEEEEEECcCCCC
Confidence            999886     348999999999553

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.23  E-value=2.5e-11  Score=108.16  Aligned_cols=122  Identities=19%  Similarity=0.271  Sum_probs=81.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEe--e-CCceEEEEeC
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVL--K-DGQVVNVIDT   76 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~--~-~~~~~~liDt   76 (221)
                      .+....+.|+++|+.++|||||+.+|+........              ....+.|.........|  . .+..+.|+||
T Consensus        15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt   94 (731)
T PRK07560         15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT   94 (731)
T ss_pred             hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence            34456789999999999999999999754321110              00112333333333322  1 3567899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ||+.++.           ..+..++..+|++++|+|+......++...++...+. +    .|.++++||+|+..
T Consensus        95 PG~~df~-----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~  153 (731)
T PRK07560         95 PGHVDFG-----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI  153 (731)
T ss_pred             CCccChH-----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence            9998742           2333445666999999999888888887777765443 2    25789999999863

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.21  E-value=1.7e-10  Score=94.34  Aligned_cols=119  Identities=20%  Similarity=0.287  Sum_probs=93.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      -+.|+++.+-..|||||+..|+.+..--.              -....++|.-..-..+.| ++.++.++||||+.+|.+
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence            37899999999999999999987753110              012357788777778888 999999999999999987


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      ..+           ..+.-+|++++++|+.+..-++.+..++...+. |.    +.|||+||+|+....+
T Consensus        84 EVE-----------Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp  137 (603)
T COG1217          84 EVE-----------RVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARP  137 (603)
T ss_pred             hhh-----------hhhhhcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCH
Confidence            665           455667999999999999999998877666554 32    4789999999886543

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=2.7e-11  Score=85.21  Aligned_cols=169  Identities=12%  Similarity=0.033  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--e------CCceEEEEeCCCCCCCCCCchHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K------DGQVVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~------~~~~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      .+++.+|.+|+||||++-..+...+...-.++.++........+..  +      ....+.+|||+|...          
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER----------   79 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER----------   79 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH----------
Confidence            4567889999999999988776654222122222222221111111  0      113578999999543          


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK  167 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~  167 (221)
                       ++......++.+-++++++|.+...+... +.|+.+|+-..- .-.+-++++.||+|+....   .....+...+..-+
T Consensus        80 -FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP  157 (219)
T KOG0081|consen   80 -FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP  157 (219)
T ss_pred             -HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC
Confidence             33444445566679999999986666555 788888876422 1233599999999976421   22334444445556


Q ss_pred             hhhhhHHHHHhHHHHHHhcCCCCHHHHHHHHHHHHhcHHH
Q 027618          168 PLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYED  207 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      ++..++....++.+.++-       .+..+.+++++..+.
T Consensus       158 YfETSA~tg~Nv~kave~-------LldlvM~Rie~~v~~  190 (219)
T KOG0081|consen  158 YFETSACTGTNVEKAVEL-------LLDLVMKRIEQCVEK  190 (219)
T ss_pred             eeeeccccCcCHHHHHHH-------HHHHHHHHHHHHHhh
Confidence            677777777777777765       666666666655543

>PRK12740 elongation factor G; Reviewed

Probab=99.20  E-value=1.7e-10  Score=102.20  Aligned_cols=111  Identities=23%  Similarity=0.297  Sum_probs=76.9

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 027618           25 VGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (221)
Q Consensus        25 ~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (221)
                      +|+.++|||||+++|+........                ....+.|.........| .+..+.+|||||..++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence            599999999999999554321110                01235566666667777 8889999999998642      


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                       ..+.    ..++..+|++++|+|+...........+..+...     ..|+++|+||+|....
T Consensus        74 -~~~~----~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -TGEV----ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -HHHH----HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence             1222    2334566999999999877777776666655442     2378999999998753

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.19  E-value=4.1e-10  Score=94.86  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=78.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+...|+++|+.++|||||+-+|+......                             ......+.|.........+ 
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-   82 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence            3455889999999999999998876422100                             0112345666666666666 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CC------HHHHHHHHHHHHHhccccccc
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      .+..+.++||||+.+           +...+...+..+|++++|+|+.+. +.      .+.++.+..+.. .|.   ++
T Consensus        83 ~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~  147 (447)
T PLN00043         83 TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ  147 (447)
T ss_pred             CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence            778999999999643           233344455778999999999854 22      233333333322 233   35


Q ss_pred             EEEEEecCCCC
Q 027618          140 MIVVFTGGDEL  150 (221)
Q Consensus       140 ~ivv~tk~D~~  150 (221)
                      +++++||+|+.
T Consensus       148 iIV~vNKmD~~  158 (447)
T PLN00043        148 MICCCNKMDAT  158 (447)
T ss_pred             EEEEEEcccCC
Confidence            89999999975

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=99.19  E-value=2.9e-10  Score=105.93  Aligned_cols=131  Identities=17%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC----CchHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA----GSEFV   89 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~   89 (221)
                      +=++++|++|+||||+|+.- |...+....      ...+.|..     +.|+.....+++||+|.+-...    .....
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence            45789999999999999774 665443221      11122332     3355778889999999775432    22345


Q ss_pred             HHHHHHHHHhh--cCCCcEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH
Q 027618           90 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFS--QE--------EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  157 (221)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~  157 (221)
                      +..+.+.++..  .+.+++||+++++.+-+.  ..        -+..++.+.+.+|..+  |++||+||+|++..    +
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence            77777776655  356799999999874432  21        1556666777777665  99999999999973    4


Q ss_pred             HHHhc
Q 027618          158 EDYLG  162 (221)
Q Consensus       158 ~~~l~  162 (221)
                      .+|++
T Consensus       260 ~~~f~  264 (1169)
T TIGR03348       260 EEFFA  264 (1169)
T ss_pred             HHHHH
Confidence            44444

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.17  E-value=1.1e-10  Score=86.37  Aligned_cols=116  Identities=18%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..++++||..++|||+++-..+-..++ ....+.-..  .....+..  .....+.+|||.|..+.+.        ++  
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp-~~yvPTVFd--nys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR--   70 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFP-EEYVPTVFD--NYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR--   70 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCc-ccccCeEEc--cceEEEEecCCCEEEEeeeecCCCccccc--------cc--
Confidence            478999999999999999777655443 322222111  11112222  1344678999999876531        11  


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ..+++.+|++|+++++.++.+...  .+|+..++..++.   .|+++|+||.|+..
T Consensus        71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~  123 (198)
T KOG0393|consen   71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRD  123 (198)
T ss_pred             -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhh
Confidence             358899999999999987777665  7888888877533   38999999999874

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.15  E-value=2.5e-11  Score=87.57  Aligned_cols=62  Identities=35%  Similarity=0.466  Sum_probs=37.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc-cC---CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-AS---SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~---~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      ..+++|+|++|||||||+|+|++......+ .+   ..+  +|+......  +  .....+|||||+.++..
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l  102 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGL  102 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--G
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCcccc
Confidence            378999999999999999999998543332 11   112  233333222  2  34578999999987543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01858 NGP_1 NGP-1

Probab=99.15  E-value=1.3e-10  Score=84.60  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ...+|+++|.+|+|||||+|+|++......+. ..+.|+......    .+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence            35789999999999999999999987654443 334455443222    3455899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.15  E-value=9.3e-10  Score=92.66  Aligned_cols=121  Identities=12%  Similarity=0.182  Sum_probs=75.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEE---------------Eee-------------
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRT---------------VLK-------------   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~---------------~~~-------------   66 (221)
                      ..+..+|+++|+-..|||||+.+|+|.....-. ....+.|........               .++             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            355689999999999999999999987542111 111222222111100               000             


Q ss_pred             ----CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEE
Q 027618           67 ----DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        67 ----~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i  141 (221)
                          ....+.++||||+.           .+.+.+...+..+|++++|+++.+. ...+..+.+..+ +.++.   ++++
T Consensus       111 ~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI  175 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII  175 (460)
T ss_pred             ccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence                12478999999953           2333333445677999999999864 455555555433 33453   3689


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +++||+|+..
T Consensus       176 VvlNKiDlv~  185 (460)
T PTZ00327        176 ILQNKIDLVK  185 (460)
T ss_pred             EEEecccccC
Confidence            9999999875

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=2.6e-10  Score=90.83  Aligned_cols=130  Identities=16%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE------------------EEe-------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR------------------TVL-------------   65 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~------------------~~~-------------   65 (221)
                      ...+-|+++|+.+.||||+|+.|+...++.....+.++|.......                  ..+             
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            4568899999999999999999999987633322222222211111                  000             


Q ss_pred             --------eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccc
Q 027618           66 --------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKI  136 (221)
Q Consensus        66 --------~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~  136 (221)
                              +--..+.+|||||+.+.....-+..-.+...+.+....+|.|++++|+. -..+++..+.+..|+..  .. 
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Ed-  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--ED-  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cc-
Confidence                    0012489999999987544333344456666777788899999999987 12455557777776642  22 


Q ss_pred             cccEEEEEecCCCCC
Q 027618          137 FDYMIVVFTGGDELE  151 (221)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (221)
                        .+-||+||+|+.+
T Consensus       213 --kiRVVLNKADqVd  225 (532)
T KOG1954|consen  213 --KIRVVLNKADQVD  225 (532)
T ss_pred             --eeEEEeccccccC
Confidence              5889999999987

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.13  E-value=6.2e-10  Score=92.23  Aligned_cols=89  Identities=19%  Similarity=0.097  Sum_probs=58.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--------------------e---CCceEEEEeC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT   76 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~liDt   76 (221)
                      .+|+++|.+++|||||+|+|++......  .....|..+.......                    .   ....+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~--~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIA--NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccccc--CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            5799999999999999999998865322  2234444444433221                    0   1245789999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      ||+.........+...+...    ++.+|++++|+++.
T Consensus        80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence            99975333233344444444    44559999999985

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.12  E-value=7.1e-10  Score=89.26  Aligned_cols=87  Identities=20%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-----------------------eCCceEEEEeCCC
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG   78 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG   78 (221)
                      |+++|.+++|||||+|+|++......  .....|..+......+                       .....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~--~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIA--NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCccc--CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            58999999999999999998764222  1223444444332221                       0234689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      +.........+...+...    ++.+|++++|+++.
T Consensus        79 lv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence            965322222233344433    45569999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=2e-10  Score=82.49  Aligned_cols=119  Identities=21%  Similarity=0.150  Sum_probs=77.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .-.+++++|..++||||+|.+.|...+-.......+.........+.. ...+..+|||.|..++           ....
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEf-----------DaIt   86 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEF-----------DAIT   86 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhH-----------HHHH
Confidence            347889999999999999999995433111111111111000011111 3345778999996543           1333


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+++++.+.++|++-.++.+.+. ..|-+.+..-.+.   .|.++|-||+|+++
T Consensus        87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlve  138 (246)
T KOG4252|consen   87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVE  138 (246)
T ss_pred             HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence            456889999999999988887766 5566666554443   38999999999886

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.11  E-value=1.4e-10  Score=78.45  Aligned_cols=115  Identities=20%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++++++|+.|+|||||.++|-|.......      |     ..++| ++.  ..|||||-+-.       .+...+++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T-----QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T-----QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcc------c-----ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence            58999999999999999999987643221      1     12333 332  16999997621       2233344445


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC-CChhhHHHHhcc
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE-DNDETLEDYLGR  163 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~-~~~~~~~~~l~~  163 (221)
                      ....++++++|-.++++-+...-        .|-....+|+|-|+||.|+.+ .+-.....+|.+
T Consensus        61 t~~dadvi~~v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e  117 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAEDADISLVKRWLRE  117 (148)
T ss_pred             HhhccceeeeeecccCccccCCc--------ccccccccceEEEEecccccchHhHHHHHHHHHH
Confidence            55677999999998865332221        122223346999999999984 233455667765

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.11  E-value=6.4e-09  Score=80.01  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .+...|+++|++++|||+|+|.|+|.. .+..+.....+|.........+.  .+..++++||||+.+...........+
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            445789999999999999999999982 34343333455554444444331  257899999999998655430111111


Q ss_pred             HHHHHhhcCCCcEEEEEEeCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~  114 (221)
                      . ++...  -+++++|.....
T Consensus        85 ~-~l~~l--lss~~i~n~~~~  102 (224)
T cd01851          85 F-ALATL--LSSVLIYNSWET  102 (224)
T ss_pred             H-HHHHH--HhCEEEEeccCc
Confidence            1 11111  237788777665

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.1e-09  Score=93.28  Aligned_cols=129  Identities=21%  Similarity=0.245  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-----------------------------------------ccee
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----------------------------------------VTST   57 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-----------------------------------------~t~~   57 (221)
                      .-+|++.|.+++||||++|+++..+..+.+..+..                                         ....
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~  188 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA  188 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence            36899999999999999999998887655432210                                         0011


Q ss_pred             eEEEEEEeeCC------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027618           58 CEMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL  131 (221)
Q Consensus        58 ~~~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~  131 (221)
                      .-...+.|+.+      ..+.++|.||+.-..        +...++..+...+|+++||+++...++..+.+++....+.
T Consensus       189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~  260 (749)
T KOG0448|consen  189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE  260 (749)
T ss_pred             ceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc
Confidence            11122444333      368999999997422        2334555566778999999999888888888877666553


Q ss_pred             hcccccccEEEEEecCCCCCCChhhHHHH
Q 027618          132 FGKKIFDYMIVVFTGGDELEDNDETLEDY  160 (221)
Q Consensus       132 ~~~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (221)
                           +++++|+.||+|.....+.-.+..
T Consensus       261 -----KpniFIlnnkwDasase~ec~e~V  284 (749)
T KOG0448|consen  261 -----KPNIFILNNKWDASASEPECKEDV  284 (749)
T ss_pred             -----CCcEEEEechhhhhcccHHHHHHH
Confidence                 457999999999876433333333

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.07  E-value=2e-09  Score=82.83  Aligned_cols=126  Identities=15%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC---CCchHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS---AGSEFVGK   91 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~---~~~~~~~~   91 (221)
                      .+...+++++|.+++|||||+|.++.......... ..+.|...+.+.    -+..++++|.||+....   ....++..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            45568999999999999999999998775333222 445555444333    57789999999954221   11222333


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++......+.+ +++++++-.+.+-|...++++-+.     ..|+.+|+||||+..
T Consensus       209 ~t~~Y~leR~nLv~~-FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k  262 (320)
T KOG2486|consen  209 FTKSYLLERENLVRV-FLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK  262 (320)
T ss_pred             hHHHHHHhhhhhhee-eeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence            333343333233444 444555547777777777777653     237999999999875

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=4.4e-09  Score=85.26  Aligned_cols=131  Identities=21%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+...++++|+..+|||||+-.|+-......                             .....+.|........+. 
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-   82 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-   82 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence            35568999999999999999988765432110                             011236666666666665 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      ....++++|+||.-+           +.+-+...+.++|+.++|++++..       ...+.++-+ .|...+|-.   .
T Consensus        83 ~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~---~  147 (428)
T COG5256          83 DKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIK---Q  147 (428)
T ss_pred             CCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCc---e
Confidence            666899999999543           222233345677999999999855       333344333 444555644   6


Q ss_pred             EEEEEecCCCCCCChhhHHHHhc
Q 027618          140 MIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus       140 ~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                      .+|++||+|...=+...+++..+
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~  170 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVS  170 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHH
Confidence            99999999987544555555444

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.05  E-value=1.5e-09  Score=75.12  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 027618           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      ..+++.+..+|+++|--++||||+++.|.+.....     ..+|.-.....+.+....++.+||.-|.-           
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGqr-----------   73 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQR-----------   73 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCcc-----------
Confidence            35677888999999999999999999998876522     22333344445555345789999988743           


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++-++..++..+|.+|||+|..+.-..++  ....+.+.+.  +-...|+.+..||-|++.
T Consensus        74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdllt  133 (185)
T KOG0074|consen   74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLT  133 (185)
T ss_pred             ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHh
Confidence            344667788889999999999765433332  2333333221  223447888889999876

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.7e-09  Score=73.10  Aligned_cols=151  Identities=14%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...++.+++|.-|+|||.|+..++..++...-+.+.+.........+.. ...++.+|||.|..           +++..
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtagqe-----------rfrav   76 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQE-----------RFRAV   76 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeecccHH-----------HHHHH
Confidence            3457889999999999999999887765433333333333333333333 45678999999943           45566


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~  172 (221)
                      .+..++++.+.+.|+|+..+-+-.. ..|+...+.+-.  ....++++.||.|+-....   +...+|..++.-.+|..+
T Consensus        77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~faeengl~fle~s  154 (215)
T KOG0097|consen   77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEAS  154 (215)
T ss_pred             HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEec
Confidence            6778899999999999985554433 445444444321  1224788999999754322   334456554444445555


Q ss_pred             HHHHHhHHH
Q 027618          173 ATKLRDQQF  181 (221)
Q Consensus       173 ~~~~~~~~~  181 (221)
                      ++..++..+
T Consensus       155 aktg~nved  163 (215)
T KOG0097|consen  155 AKTGQNVED  163 (215)
T ss_pred             ccccCcHHH
Confidence            555544443

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2.2e-09  Score=98.04  Aligned_cols=132  Identities=17%  Similarity=0.232  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----CcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc----hHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS----EFVG   90 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~----~~~~   90 (221)
                      +=.+++|++|+||||++.. .|..++.......     ..|..|.     |......++|||.|-+-...+.    ...+
T Consensus       126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-----cccccceEEEcCCcceecccCcchhhHHHH
Confidence            3468999999999998844 3554443321111     1134343     5588899999999988655322    2245


Q ss_pred             HHHHHHHHhh--cCCCcEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHH
Q 027618           91 KEIVKCIGMA--KDGIHAVLVVFSVRSRFSQEE----------EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  158 (221)
Q Consensus        91 ~~~~~~~~~~--~~~~~~il~v~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (221)
                      ..+...++..  .+..++|++.+++.+-.+...          +..++.|.+.++..  .|+++++||.|++.  +  ++
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~--G--F~  273 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLP--G--FE  273 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEecccccc--c--HH
Confidence            5555555433  356799999999875433322          23355555555544  49999999999997  3  55


Q ss_pred             HHhcc
Q 027618          159 DYLGR  163 (221)
Q Consensus       159 ~~l~~  163 (221)
                      +|+..
T Consensus       274 efF~~  278 (1188)
T COG3523         274 EFFGS  278 (1188)
T ss_pred             HHHhc
Confidence            66653

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.04  E-value=6.5e-10  Score=81.90  Aligned_cols=57  Identities=33%  Similarity=0.401  Sum_probs=42.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ...+++++|.+++|||||+|+|++......+. ..+.|...+...    .+..+.++||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~----~~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVH----LDKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEE----eCCCEEEEECcCC
Confidence            34799999999999999999999987654543 345555544333    2346889999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.6e-08  Score=69.95  Aligned_cols=127  Identities=16%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+.+|+.+|-.++||||++..|+-...     ....+|.-..+..+.+ .+..+.++|.-|..           .++..
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl   77 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL   77 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence            3468999999999999999988764321     1223455566677777 88899999988843           45677


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~  162 (221)
                      ++.++++..++|||+|..++-.-+  +.-+.|....+.+  ...++.|..||-|+.... ++.+.+|+.
T Consensus        78 WrhYy~gtqglIFV~Dsa~~dr~e--eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le  144 (180)
T KOG0071|consen   78 WRHYYTGTQGLIFVVDSADRDRIE--EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE  144 (180)
T ss_pred             HHhhccCCceEEEEEeccchhhHH--HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence            778899999999999987552222  2222333333322  122678889999986532 567778776

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.01  E-value=1.1e-09  Score=78.20  Aligned_cols=57  Identities=28%  Similarity=0.469  Sum_probs=40.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      ..+++++|.+|+||||++|+|++....... ...+.|.....  +..  +..+.++||||+.
T Consensus        83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~i~DtpG~~  139 (141)
T cd01857          83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQT--IFL--TPTITLCDCPGLV  139 (141)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence            348999999999999999999998765332 23344444433  322  2368999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13768 GTPase; Provisional

Probab=99.01  E-value=2.9e-09  Score=83.36  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (221)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (221)
                      .+.++||||..+.... ......+.+.+....  ++++++|+|+....+..+.....++....-.....|+++|+||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            6899999997653221 223444444443321  7899999999866666665444444321111224589999999999


Q ss_pred             CC
Q 027618          150 LE  151 (221)
Q Consensus       150 ~~  151 (221)
                      ..
T Consensus       175 ~~  176 (253)
T PRK13768        175 LS  176 (253)
T ss_pred             cC
Confidence            86

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.01  E-value=6.4e-08  Score=80.51  Aligned_cols=123  Identities=16%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCC---------cceeeEE--EEEE--e------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSG---------VTSTCEM--QRTV--L------------   65 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~---------~t~~~~~--~~~~--~------------   65 (221)
                      .++..|+++|++|+||||++..|.      |..+......+..         .......  ....  .            
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            345789999999999999998886      3332211111000         0000000  1000  0            


Q ss_pred             --eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           66 --KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                        ..+..++||||||...   .+..+..++......  ..++.+++|+|+.....  .....+.+.+.     ..+.-+|
T Consensus       178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~Gq~--a~~~a~~F~~~-----~~~~g~I  245 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIGQA--AEAQAKAFKDS-----VDVGSVI  245 (429)
T ss_pred             HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccChh--HHHHHHHHHhc-----cCCcEEE
Confidence              0245789999999763   234566666666432  35688999999863322  23333444432     2357799


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||.|...
T Consensus       246 lTKlD~~a  253 (429)
T TIGR01425       246 ITKLDGHA  253 (429)
T ss_pred             EECccCCC
Confidence            99999754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.97  E-value=4.2e-09  Score=84.08  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (221)
                      ....+++++|.+++||||++|+|++......+. ..+.|...+...    -+..+.++||||+..+....+
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~  184 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQ  184 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcH
Confidence            345789999999999999999999987644432 445566554322    245688999999987654433

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.97  E-value=1.4e-08  Score=71.27  Aligned_cols=120  Identities=18%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHH-hCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSI-LGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l-~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      +...+|+++|--++|||+++..| +|...+....  .++........++.+.  ...+.+.||.|+.+..   .    ++
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----eL   77 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--HPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----EL   77 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCcc--ccchhhheeEeeecCCChhheEEEeecccccCch---h----hh
Confidence            34578999999999999999665 5554432221  2222223333343323  2468899999998631   1    11


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc---ccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG---KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~tk~D~~~  151 (221)
                      -+   .++.-+|++++|++..+.   +..+.++.|++...   .....|++|+.|+.|+..
T Consensus        78 pr---hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~  132 (198)
T KOG3883|consen   78 PR---HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE  132 (198)
T ss_pred             hH---hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence            11   344556999999987643   33444444444333   234458999999999875

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.97  E-value=1.1e-09  Score=86.08  Aligned_cols=63  Identities=29%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      +.+.+|+|++|+|||||+|+|.+......+    ....|..++.....+.+  .....++||||+.++.
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~  230 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLG  230 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccC
Confidence            468899999999999999999986543322    11122222222222322  2456799999998653

>cd01855 YqeH YqeH

Probab=98.95  E-value=1.5e-09  Score=81.44  Aligned_cols=57  Identities=30%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccc-------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      +.+++++|.+|+|||||||+|++.....       ......++|........    +..+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            3689999999999999999999865422       11223345555544333    235799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.94  E-value=2.8e-09  Score=77.39  Aligned_cols=58  Identities=26%  Similarity=0.401  Sum_probs=41.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ....+++++|.+|+||||++|+|++......+. ..+.|.......    .+..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVK----LDNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEE----ecCCEEEEECCCC
Confidence            345889999999999999999999977543332 234444444322    2356899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.3e-08  Score=83.01  Aligned_cols=121  Identities=16%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh--CCcccccc------------------cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL--GRRAFKSR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (221)
                      ...++.+++-++.+|||||-..|+  |......+                  ....++...+.+-..+| .+..+.++||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT   88 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT   88 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence            456899999999999999986653  22221111                  01125555666666777 8999999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      ||+.||+.+.-           ..+..+|+.+.|+|+-.++.++..+.++..+-. +    .|++-.+||+|+-..++
T Consensus        89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~----iPI~TFiNKlDR~~rdP  150 (528)
T COG4108          89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D----IPIFTFINKLDREGRDP  150 (528)
T ss_pred             CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc-C----CceEEEeeccccccCCh
Confidence            99999875433           344566999999999878988887776654432 2    27999999999876444

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.92  E-value=3.6e-09  Score=79.60  Aligned_cols=75  Identities=21%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..+++|||||...   .+.....++.+.+...  .++-+++|++++...  .+...+....+.++     .--+++||.|
T Consensus        84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~-----~~~lIlTKlD  151 (196)
T PF00448_consen   84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMGQ--EDLEQALAFYEAFG-----IDGLILTKLD  151 (196)
T ss_dssp             SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred             CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccCh--HHHHHHHHHhhccc-----CceEEEEeec
Confidence            5689999999874   2344566666655444  567899999987433  22223333333332     3458899999


Q ss_pred             CCCCChh
Q 027618          149 ELEDNDE  155 (221)
Q Consensus       149 ~~~~~~~  155 (221)
                      ....-+.
T Consensus       152 et~~~G~  158 (196)
T PF00448_consen  152 ETARLGA  158 (196)
T ss_dssp             SSSTTHH
T ss_pred             CCCCccc
Confidence            8764333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=6.1e-09  Score=88.64  Aligned_cols=121  Identities=22%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC---------------CCCcceeeEEEEEEe----eCCceEEEE
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVL----KDGQVVNVI   74 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~----~~~~~~~li   74 (221)
                      ..+...+.|+++|+-++|||+|+..|.+..-+.....               ..+.+......++..    .....+.++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3455668999999999999999999987764322100               112222222222211    134468899


Q ss_pred             eCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ||||+-+|..       +..    ..++.+|++++|+|+.+.......+.+++.-+.     ..|+++|+||+|++
T Consensus       203 DTPGHVnF~D-------E~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  203 DTPGHVNFSD-------ETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL  262 (971)
T ss_pred             cCCCcccchH-------HHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence            9999988642       222    344566999999999989998888888776553     23799999999986

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.91  E-value=9.1e-09  Score=81.71  Aligned_cols=63  Identities=25%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      ....+++++|.+|+|||||+|+|++......+. ..+.|...+...    -+..+.++||||+..+..
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPG~~~~~~  178 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIK----LSDGLELLDTPGILWPKF  178 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEE----eCCCEEEEECCCcccCCC
Confidence            345789999999999999999999887554442 345555554322    234689999999965443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.91  E-value=5.9e-10  Score=76.28  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             EEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           23 VLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        23 ~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      +++|.+++|||.|+-..-...+.... .++.++..........- ...++.+|||.|...           +++.....+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-~kvklqiwdtagqer-----------frsvt~ayy   68 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQER-----------FRSVTHAYY   68 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-cEEEEEEeeccchHH-----------HhhhhHhhh
Confidence            47899999999986443222211111 12222222223333322 455789999999654           445555678


Q ss_pred             CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.+|++++++|+.++.+... +.|+..+.+.-...+  .++++.||+|...
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~  117 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAH  117 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccch
Confidence            88999999999987888777 788889988733332  5889999999864

>PRK12288 GTPase RsgA; Reviewed

Probab=98.90  E-value=3.1e-09  Score=86.56  Aligned_cols=60  Identities=28%  Similarity=0.441  Sum_probs=39.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      ..++|+|.+|+|||||||+|++.....++...    .|  +|+....+...  .  ...++||||+-++.
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~--~~~liDTPGir~~~  271 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--H--GGDLIDSPGVREFG  271 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--C--CCEEEECCCCCccc
Confidence            35799999999999999999998765443211    11  23333333331  2  24599999998754

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=9.9e-09  Score=74.41  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|--+|||||++..+--....     ...+|.-..+..+.+ .+..+.+||.-|...           ++.
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v-----ttvPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~   76 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-----TTVPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRP   76 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcc-----cCCCccccceeEEEE-cceEEEEEecCCCcc-----------ccc
Confidence            455689999999999999999776433332     224577777788888 899999999988643           223


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (221)
                      .+..+++..+++|||+|.+++....+  .-+.|...+...  ...|+++..||.|...
T Consensus        77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~  132 (181)
T KOG0070|consen   77 LWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPG  132 (181)
T ss_pred             chhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhccc
Confidence            45567788899999999987655444  222222222211  3448999999999765

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.90  E-value=7.6e-09  Score=81.33  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..|+++|.++|||||||++|++.......  .-..|..+.......+.++.+.+.||-||...  -+-.+..-+...+ .
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATL-e  253 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATL-E  253 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHH-H
Confidence            78999999999999999999977664443  23345555555566668899999999999752  2222222222222 2


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ivv~tk~D~~~  151 (221)
                      ....+|.++-|.|++.+.-.+.+..+....+..|.+   ....++=|=||.|.-.
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence            235679999999999666555544444443334642   3345677788888654

>cd01856 YlqF YlqF

Probab=98.89  E-value=6.2e-09  Score=76.81  Aligned_cols=58  Identities=26%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      ...+++++|.+|+|||||+|+|++......+ ...+.|........    ...+.++||||+.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~----~~~~~~iDtpG~~  171 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKI----SPGIYLLDTPGIL  171 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEe----cCCEEEEECCCCC
Confidence            4478999999999999999999987754332 23344554444332    2568899999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.4e-08  Score=75.23  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..|.++|++++|||+|+-.|......     ..-+...+....+.+ ......+||-||...       +...+...++.
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            78999999999999998766644321     122233344444444 555689999999753       22333333322


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHh----cccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~tk~D~~~  151 (221)
                      . ..+-+++||+|.. .+.+.-+...++|-...    +..-..|+.+..||.|+..
T Consensus       106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            1 2567999999876 44444444444443332    2233457999999999875

>PRK12289 GTPase RsgA; Reviewed

Probab=98.86  E-value=5.3e-09  Score=85.29  Aligned_cols=61  Identities=26%  Similarity=0.381  Sum_probs=40.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~----~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      ..++|+|++|+|||||||+|++......+..    ..|  +|+......  .+.+  ..|+||||+..+..
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l~~g--~~liDTPG~~~~~l  239 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--LPNG--GLLADTPGFNQPDL  239 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--CCCC--cEEEeCCCcccccc
Confidence            4689999999999999999998765443311    111  333343332  2122  47999999987543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.85  E-value=1.6e-08  Score=80.64  Aligned_cols=60  Identities=37%  Similarity=0.466  Sum_probs=40.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      .+++++|++|+|||||+|+|++......+...    .+  +|+....  +..  .....++||||+.++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~--~~~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL--PGGGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc--CCCCEEEECCCCCccC
Confidence            68999999999999999999998765443111    11  2333322  222  2235799999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.84  E-value=7.1e-09  Score=72.24  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ...+.++|-..+||||++|.+....+...    -.+|.-.....+.- ....+.++|.||...|           +..+.
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk-gnvtiklwD~gGq~rf-----------rsmWe   83 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----------RSMWE   83 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc-CceEEEEEecCCCccH-----------HHHHH
Confidence            46789999999999999998875443211    12233333333322 4567889999997653           23445


Q ss_pred             hhcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+.+++++++||+|+.++  .+..-.+....|.+-  .-...|+.|+.||.|+..
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~  136 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPG  136 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcc
Confidence            677899999999999753  222222222222221  112348999999999865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.84  E-value=5.8e-09  Score=81.30  Aligned_cols=59  Identities=27%  Similarity=0.329  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc-C---C--CCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-S---S--SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~---~--~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      ..++++|++|+|||||+|+|++......+. +   .  ..+|+.......   .  ...++||||+..+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence            588999999999999999999876543321 1   1  113344433332   2  34899999998754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.1e-08  Score=84.23  Aligned_cols=110  Identities=19%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .++..++++||+|+||||||.+|.....-..-.. ..++|...      . ..++++++.+|.-          ...+.+
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs------g-K~RRiTflEcp~D----------l~~miD  129 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS------G-KTRRITFLECPSD----------LHQMID  129 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee------c-ceeEEEEEeChHH----------HHHHHh
Confidence            4557888999999999999999876543211111 12222211      1 6788999999942          123333


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..    .-+|.+|++++.+..+..+..+++..+... |   .+.++-|+||.|+..
T Consensus       130 va----KIaDLVlLlIdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk  177 (1077)
T COG5192         130 VA----KIADLVLLLIDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFK  177 (1077)
T ss_pred             HH----HhhheeEEEeccccCceehHHHHHHHHhhc-C---CCceEEEEeeccccc
Confidence            33    334999999999988988888888777654 4   447999999999887

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.83  E-value=2.2e-07  Score=77.98  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---------------------------------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---------------------------------------------   51 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---------------------------------------------   51 (221)
                      +.-++|+++|.-++||||.+..+.....++.+...                                             
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            44589999999999999999999877665433211                                             


Q ss_pred             -------CCcceeeEEEEEE--eeCCceEEEEeCCCCCCC--CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHH
Q 027618           52 -------SGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  120 (221)
Q Consensus        52 -------~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  120 (221)
                             .|.|.........  .++-.+.+++|.||+..+  .++..+....+.+.....+..+++||+|+.-. ....+
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE  464 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE  464 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence                   1334444333333  234457899999999763  22233445556666666788899999999766 44444


Q ss_pred             HHHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhc
Q 027618          121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLG  162 (221)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~  162 (221)
                      -...-+.+... .+ .-...|+|+||.|+.+.   ++..+...+.
T Consensus       465 RSnVTDLVsq~-DP-~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  465 RSIVTDLVSQM-DP-HGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             hhhHHHHHHhc-CC-CCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            33333444433 32 23469999999998753   3566777776

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=6.5e-08  Score=79.16  Aligned_cols=123  Identities=21%  Similarity=0.318  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .|+..|+--.|||||+.+++|..... ......+.|....++..+. .+..+.++|.||+.+           +.+.+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence            47888999999999999999886422 1234567888888888777 556899999999864           2233334


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHh
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l  161 (221)
                      .....|..++|++.++.+..+..+.+..|.- +|..   +.++|+||+|+.+  ...+++..
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d--~~r~e~~i  125 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVD--EARIEQKI  125 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEecccccc--HHHHHHHH
Confidence            5567799999999998999998888777764 5655   6899999999987  44444433

>PRK00098 GTPase RsgA; Reviewed

Probab=98.82  E-value=2.6e-08  Score=79.93  Aligned_cols=60  Identities=32%  Similarity=0.396  Sum_probs=39.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      +..++++|++|+|||||+|+|++......+...    .  .+|+......  .  .....++||||+..+
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~--~~~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--L--PGGGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--c--CCCcEEEECCCcCcc
Confidence            468999999999999999999998754433111    1  1233232222  2  234589999999853

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.81  E-value=2e-08  Score=91.52  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             CHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           31 GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        31 GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      +||||+.+|.+.++...  ...+.|++...+.+++...                 ..+.||||||+.++.          
T Consensus       473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~----------  540 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT----------  540 (1049)
T ss_pred             ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH----------
Confidence            49999999999988433  4567777777666655211                 138999999965431          


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       .........+|++++|+++++.+..++...+..++..     ..|+++++||+|+..
T Consensus       541 -~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        541 -SLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             -HHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence             1112345668999999999988888888888776653     237999999999864

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.6e-08  Score=87.19  Aligned_cols=122  Identities=25%  Similarity=0.321  Sum_probs=87.0

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCC
Q 027618           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTP   77 (221)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (221)
                      +++++...+.+.++.+-..|||||..+|+..+...+              +....++|......+... .+..+.+||+|
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidsp   80 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSP   80 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCC
Confidence            345666779999999999999999999877654221              123345666655555444 67789999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      |+-||++...           .+..-.|+.++++|+.++...+....+++..-   ..  ...++|+||+|++
T Consensus        81 ghvdf~sevs-----------sas~l~d~alvlvdvvegv~~qt~~vlrq~~~---~~--~~~~lvinkidrl  137 (887)
T KOG0467|consen   81 GHVDFSSEVS-----------SASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---EG--LKPILVINKIDRL  137 (887)
T ss_pred             Cccchhhhhh-----------hhhhhcCCcEEEEeeccccchhHHHHHHHHHH---cc--CceEEEEehhhhH
Confidence            9999764322           33344499999999998999888777664322   11  1588999999965

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.79  E-value=1.7e-08  Score=82.98  Aligned_cols=123  Identities=18%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccc----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +..++++|.+|+|||||+|+|++.....    ......++|.......    .+..+.++||||+.........+..+-.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~----~~~~~~l~DtPG~~~~~~~~~~l~~~~l  229 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP----LDDGHSLYDTPGIINSHQMAHYLDKKDL  229 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE----eCCCCEEEECCCCCChhHhhhhcCHHHH
Confidence            3689999999999999999999864311    1223344455443322    2344679999999863211111111111


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.+. -........+.++....+.......++.+..   .  ...+.+.+++.+.+.
T Consensus       230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH  280 (360)
T ss_pred             hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence            1111 1134466777777664444444333333322   1  113566677766664

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=1e-07  Score=73.67  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchH-------
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEF-------   88 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~-------   88 (221)
                      .+.|+.+|.+|.|||||++.|.+...-....+..-.+......+++..   -.-.++++||.|+++.-...++       
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            478999999999999999999987753222222222222222222221   1236899999999974332221       


Q ss_pred             HHHHHHHHHH-----------hhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           89 VGKEIVKCIG-----------MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        89 ~~~~~~~~~~-----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..++..++.           ..-..+|+.+|.+..+ ..+...+.-.++.|..      ..++|.|+.|+|.+.
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhh
Confidence            1112211111           1125679999999875 4566666666655544      236888999999886

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.78  E-value=3.1e-08  Score=81.63  Aligned_cols=154  Identities=20%  Similarity=0.262  Sum_probs=100.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeC----CceEEEEeCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPG   78 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG   78 (221)
                      ....+.+.++.+-..|||||..+|+....-...             ....|.|...+.....|..    ...+.+|||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            344578899999999999999998755421110             1245778887777776632    24688999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh---
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE---  155 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~---  155 (221)
                      +-||.-...       +++..    +.+.|+|+|++.+...+....   +--.+....  -++.|+||+|+-..+.+   
T Consensus        86 HVDFsYEVS-------RSLAA----CEGalLvVDAsQGveAQTlAN---~YlAle~~L--eIiPViNKIDLP~Adpervk  149 (603)
T COG0481          86 HVDFSYEVS-------RSLAA----CEGALLVVDASQGVEAQTLAN---VYLALENNL--EIIPVLNKIDLPAADPERVK  149 (603)
T ss_pred             ccceEEEeh-------hhHhh----CCCcEEEEECccchHHHHHHH---HHHHHHcCc--EEEEeeecccCCCCCHHHHH
Confidence            999864433       33333    379999999997776555222   111112221  48999999998876654   


Q ss_pred             -hHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618          156 -TLEDYLGRECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       156 -~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                       .+++.+.-++......|++...++.+.++.
T Consensus       150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~  180 (603)
T COG0481         150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEA  180 (603)
T ss_pred             HHHHHHhCCCcchheeEecccCCCHHHHHHH
Confidence             345555434555566777776666665554

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.77  E-value=1.5e-07  Score=72.64  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++..|+++|-.|+||||++.+|...
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h   42 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSH   42 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence            355678899999999999999887654

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.1e-07  Score=73.99  Aligned_cols=120  Identities=15%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +.+...|+.+|+-..|||||-.+|+..-..              .......++|.......+.. ..+.+..+|+||..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence            455689999999999999999888653210              01122346677666666666 778899999999653


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                             ..+.+...    ..+.|+.|+|+++.+..-++.++-+-..++. |.+   .+++++||+|..+
T Consensus        88 -------YvKNMItg----AaqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gvp---~ivvflnK~Dmvd  142 (394)
T COG0050          88 -------YVKNMITG----AAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YIVVFLNKVDMVD  142 (394)
T ss_pred             -------HHHHHhhh----HHhcCccEEEEEcCCCCCCcchhhhhhhhhc-CCc---EEEEEEecccccC
Confidence                   22222222    2344899999999988888887665444443 544   6999999999987

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.1e-07  Score=82.08  Aligned_cols=116  Identities=18%  Similarity=0.185  Sum_probs=81.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-----------------eCCceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~   80 (221)
                      +.+.++++|+-.+|||-|+..|-+.++.....  .+.|........+.                 ..-..+.+|||||..
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea--ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA--GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccc--cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            34788999999999999999999988754432  33333322211111                 033458899999977


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .|..-.           ......+|.+|+|+|+-+++.++....+..|+..     .-|+||.+||+|++-
T Consensus       552 sFtnlR-----------srgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  552 SFTNLR-----------SRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLY  606 (1064)
T ss_pred             hhhhhh-----------hccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhc
Confidence            643211           1223345899999999989999998888888764     238999999999973

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.74  E-value=4e-08  Score=74.82  Aligned_cols=105  Identities=20%  Similarity=0.287  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -+|+++|-|++|||||+..|+...-  ...+...+|..|....+.+ ++-.+.++|.||+.+.........++..    .
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvi----a  135 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVI----A  135 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEE----E
Confidence            6899999999999999999987653  2234456778888888888 9999999999999864333322222222    2


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG  133 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~  133 (221)
                      ..+-+|.++.|+|++ +... .+..++.-.+..|
T Consensus       136 vArtaDlilMvLDat-k~e~-qr~~le~ELe~vG  167 (364)
T KOG1486|consen  136 VARTADLILMVLDAT-KSED-QREILEKELEAVG  167 (364)
T ss_pred             EeecccEEEEEecCC-cchh-HHHHHHHHHHHhc
Confidence            345669999999988 3322 2334444334345

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.5e-07  Score=79.24  Aligned_cols=133  Identities=19%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEE
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTV   64 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~   64 (221)
                      +...+...++++|+..+|||||+-.|+......                             ......|.|.......++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            334466889999999999999998876443211                             112234667766666666


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC-----CCC--HHHHHHHHHHHHHhccccc
Q 027618           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RFS--QEEEAALHSLQTLFGKKIF  137 (221)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~  137 (221)
                      . ....++++|+||+-+|...           +......+|+.++|+|++.     .|.  .+.++....++ .+|..  
T Consensus       252 s-~~~~~tliDaPGhkdFi~n-----------mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr-~Lgi~--  316 (603)
T KOG0458|consen  252 S-KSKIVTLIDAPGHKDFIPN-----------MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLR-SLGIS--  316 (603)
T ss_pred             c-CceeEEEecCCCccccchh-----------hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHH-HcCcc--
Confidence            5 7788999999998776422           1134456799999999873     122  11234443444 45644  


Q ss_pred             ccEEEEEecCCCCCCChhhHHHHhc
Q 027618          138 DYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus       138 ~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                       .++|++||+|...=+.+.+++..+
T Consensus       317 -qlivaiNKmD~V~Wsq~RF~eIk~  340 (603)
T KOG0458|consen  317 -QLIVAINKMDLVSWSQDRFEEIKN  340 (603)
T ss_pred             -eEEEEeecccccCccHHHHHHHHH
Confidence             699999999998544555655444

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=6.6e-08  Score=78.78  Aligned_cols=89  Identities=16%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCC----------------ceEEEEeCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDF   82 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~   82 (221)
                      ..++++|.+++|||||+|+|++... ...  ....+|..+....+..+..                ..+.++|.||+...
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a--~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA--NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccC--CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            6789999999999999999999875 322  2244555566555555332                25889999999864


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      ..........+...++.+    |+++.|++..
T Consensus        81 As~g~Glgn~fL~~ir~~----d~l~hVvr~f  108 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREV----DIIQHVVRCF  108 (368)
T ss_pred             hhcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence            443444555566555554    9999999874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.73  E-value=3.5e-08  Score=79.84  Aligned_cols=63  Identities=25%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (221)
                      ...+++++|-+++||||+||+|++......+. .+|.|...+....    ...+.++||||+......
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~  193 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFD  193 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCcc
Confidence            34789999999999999999999998755543 4466666554443    345889999999875443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.72  E-value=1.1e-07  Score=77.75  Aligned_cols=123  Identities=20%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc--------ccccCCC-Cc--------ceeeEEEEEE-----------ee--C
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF--------KSRASSS-GV--------TSTCEMQRTV-----------LK--D   67 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~--------~~~~~~~-~~--------t~~~~~~~~~-----------~~--~   67 (221)
                      .+..|+++|++|+||||++..|+.....        ..+.... ..        ...+......           ..  .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            3578999999999999999888643210        0000000 00        0000000000           00  1


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++||||||...   .+.....++.+.+...  .++.+++|+++.... ......++.+..      ...--+++||.
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~------~~idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD------IHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC------CCCCEEEEEcc
Confidence            35789999999864   2344455665555433  357788888876222 222334433332      12456999999


Q ss_pred             CCCCC
Q 027618          148 DELED  152 (221)
Q Consensus       148 D~~~~  152 (221)
                      |....
T Consensus       388 DET~k  392 (436)
T PRK11889        388 DETAS  392 (436)
T ss_pred             cCCCC
Confidence            98753

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.72  E-value=6.2e-08  Score=79.06  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEE-----------------------------EEeeC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQR-----------------------------TVLKD   67 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~-----------------------------~~~~~   67 (221)
                      ++..|+||||||+||||++-.|......... ....-.|+.+.+..                             ..+ .
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~  280 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R  280 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence            3689999999999999999887665431111 11111222221111                             111 4


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ...++||||.|...   .+.....++...+..+  ...-+.+|++++.. .......++.+...      +.--+++||.
T Consensus       281 ~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~f~~~------~i~~~I~TKl  348 (407)
T COG1419         281 DCDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQFSLF------PIDGLIFTKL  348 (407)
T ss_pred             cCCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHHhccC------CcceeEEEcc
Confidence            55799999999874   2344556666665544  33455677777622 22223333333321      2356899999


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      |...
T Consensus       349 DET~  352 (407)
T COG1419         349 DETT  352 (407)
T ss_pred             cccC
Confidence            9875

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.71  E-value=1.9e-07  Score=76.46  Aligned_cols=129  Identities=20%  Similarity=0.221  Sum_probs=67.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccccc-CCCCcceee------------------EEEE-----------EEee
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQR-----------TVLK   66 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~-----------~~~~   66 (221)
                      ..+..++|+|++|+||||++..|.+......+. ...-.+...                  ....           ..+ 
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-  213 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-  213 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence            345789999999999999998887543211000 000000000                  0000           112 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc---cccEEEE
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI---FDYMIVV  143 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ivv  143 (221)
                      .+..+++|||||....   +....+++. .+... ..+.-.++|+++....... ...++.+....+.+.   ....-+|
T Consensus       214 ~~~DlVLIDTaG~~~~---d~~l~e~La-~L~~~-~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I  287 (374)
T PRK14722        214 RNKHMVLIDTIGMSQR---DRTVSDQIA-MLHGA-DTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCI  287 (374)
T ss_pred             cCCCEEEEcCCCCCcc---cHHHHHHHH-HHhcc-CCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEE
Confidence            4567899999998742   222233333 22222 2334567888887443322 334444444433211   1134688


Q ss_pred             EecCCCCCC
Q 027618          144 FTGGDELED  152 (221)
Q Consensus       144 ~tk~D~~~~  152 (221)
                      +||.|....
T Consensus       288 ~TKlDEt~~  296 (374)
T PRK14722        288 LTKLDEASN  296 (374)
T ss_pred             EeccccCCC
Confidence            999998753

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=6.5e-08  Score=70.21  Aligned_cols=57  Identities=30%  Similarity=0.419  Sum_probs=38.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ...+++++|.+|+||||++|++++........ ..+.|.......    .+..+.++||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQLVK----ITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEEEE----cCCCEEEEECcCC
Confidence            45788999999999999999999865433322 223333322111    3447899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.7e-07  Score=66.80  Aligned_cols=116  Identities=11%  Similarity=0.045  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..-+++++|--+||||||++.|=....  ..   ..+|..+....... .+..++.+|.-|..           +-++.+
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl--~q---hvPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~w   81 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL--GQ---HVPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRVW   81 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc--cc---cCCCcCCChHHhee-cCceEEEEccccHH-----------HHHHHH
Confidence            346889999999999999999854432  11   12233333333444 78889999988853           233555


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.+++.+|++++.+|+-+.-...+ +..++.+... -.-.+.|++++.||+|.-.
T Consensus        82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~  135 (193)
T KOG0077|consen   82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPY  135 (193)
T ss_pred             HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence            677788899999999875433333 3444443332 1114558999999999875

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.70  E-value=1.2e-06  Score=70.83  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+....|++.|++|+|||||++.|..
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~   78 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGM   78 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34568999999999999999988643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.67  E-value=3.8e-07  Score=72.75  Aligned_cols=130  Identities=14%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc---------c----------------------cCCCCcceeeEEEEEE
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS---------R----------------------ASSSGVTSTCEMQRTV   64 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~---------~----------------------~~~~~~t~~~~~~~~~   64 (221)
                      +...++++-+|.-..||||||-+|+.......         .                      ....++|...-+-...
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            34558999999999999999988876543110         0                      0123666666554444


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                      . ..+.+.+.||||+..           ..+-+..-..-+|+.++++|+...+-.+.++ ...+..++|-.   ++++.+
T Consensus        83 T-~KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAV  146 (431)
T COG2895          83 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAV  146 (431)
T ss_pred             c-ccceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEE
Confidence            4 678999999999642           1122222234458999999998666555533 34556666755   799999


Q ss_pred             ecCCCCCCChhhHHHHh
Q 027618          145 TGGDELEDNDETLEDYL  161 (221)
Q Consensus       145 tk~D~~~~~~~~~~~~l  161 (221)
                      ||+|+.+-+.+.+++..
T Consensus       147 NKmDLvdy~e~~F~~I~  163 (431)
T COG2895         147 NKMDLVDYSEEVFEAIV  163 (431)
T ss_pred             eeecccccCHHHHHHHH
Confidence            99999865455454433

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.67  E-value=2.2e-07  Score=75.04  Aligned_cols=125  Identities=17%  Similarity=0.164  Sum_probs=69.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc------ccCCCC-----------cceeeEEEEEE---------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSG-----------VTSTCEMQRTV---------------   64 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------~~~~~~-----------~t~~~~~~~~~---------------   64 (221)
                      .++..|+++|++|+||||++..|++......      ...+..           ...........               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988765432111      000000           00000000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                       ...+..+++|||||....   ......++.+....+    ...++..++|+++..+..  .........+.     ...
T Consensus       192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~-----~~~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEA-----VGL  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhh-----CCC
Confidence             013457999999998743   333445555544322    235688999999984322  21112222222     124


Q ss_pred             EEEEEecCCCCC
Q 027618          140 MIVVFTGGDELE  151 (221)
Q Consensus       140 ~ivv~tk~D~~~  151 (221)
                      .-+|+||.|...
T Consensus       262 ~giIlTKlD~t~  273 (318)
T PRK10416        262 TGIILTKLDGTA  273 (318)
T ss_pred             CEEEEECCCCCC
Confidence            679999999764

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.67  E-value=1.3e-07  Score=83.56  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccccc-CCCCcceeeEE------------------EE-----------EEeeCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTCEM------------------QR-----------TVLKDG   68 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~------------------~~-----------~~~~~~   68 (221)
                      +..|+|+|++|+||||++..|++......+. ...-.+.....                  ..           ... .+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~  263 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD  263 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence            5789999999999999999988754211110 00000000000                  00           011 34


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..++||||||....   +....+++.....  ...++-.++|+++.... ..-...++.+....+.+   .--+|+||.|
T Consensus       264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~~-~~l~~i~~~f~~~~~~~---i~glIlTKLD  334 (767)
T PRK14723        264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASHG-DTLNEVVHAYRHGAGED---VDGCIITKLD  334 (767)
T ss_pred             CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCcH-HHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence            57899999997642   2334444444322  23456788898887321 11123333333321112   3568899999


Q ss_pred             CCC
Q 027618          149 ELE  151 (221)
Q Consensus       149 ~~~  151 (221)
                      ...
T Consensus       335 Et~  337 (767)
T PRK14723        335 EAT  337 (767)
T ss_pred             CCC
Confidence            864

>PTZ00099 rab6; Provisional

Probab=98.67  E-value=1.9e-07  Score=69.19  Aligned_cols=105  Identities=16%  Similarity=0.023  Sum_probs=63.1

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      ...+.+|||||...+.           .....+++.+|++|+|+|++++.+... ..|+..+....+.  ..|+++|+||
T Consensus        28 ~v~l~iwDt~G~e~~~-----------~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK   94 (176)
T PTZ00099         28 PVRLQLWDTAGQERFR-----------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNK   94 (176)
T ss_pred             EEEEEEEECCChHHhh-----------hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEEC
Confidence            3578899999975432           223356688999999999986555444 4566666554332  2478999999


Q ss_pred             CCCCCCC---hhhHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618          147 GDELEDN---DETLEDYLGRECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       147 ~D~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                      +|+....   ......+.......++..++.....+.+.++.
T Consensus        95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~  136 (176)
T PTZ00099         95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKK  136 (176)
T ss_pred             cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            9975321   12222333322223444565555555555544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.65  E-value=7.6e-07  Score=70.43  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=46.5

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (221)
                      .+..++++||||....   +.....++.+.....    ...+|.+++|+++..  ...+......+.+..     ...-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence            4467899999998752   344455555544322    235789999999973  333333333333322     24679


Q ss_pred             EEecCCCCCC
Q 027618          143 VFTGGDELED  152 (221)
Q Consensus       143 v~tk~D~~~~  152 (221)
                      |+||.|....
T Consensus       223 IlTKlDe~~~  232 (272)
T TIGR00064       223 ILTKLDGTAK  232 (272)
T ss_pred             EEEccCCCCC
Confidence            9999998653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.65  E-value=6.1e-08  Score=80.54  Aligned_cols=62  Identities=32%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (221)
                      ..+|++||-+++||||+||+|.|.+.-.. .+++|.|...+...+    ...+.++|+||+--++..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~  375 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS  375 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence            58999999999999999999999987433 456677777665443    456789999999754433

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.5e-07  Score=75.92  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF   82 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~   82 (221)
                      .+++++|.|++|||||+|+++.....  ....+.+|..++...+..+                 ....+.|+|.+|+-..
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~--~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAE--IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCcc--ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            68999999999999999999987742  2234455655555443321                 1125789999999876


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      .+..+-+..++..-++.    +|+|+-|+++.
T Consensus        81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence            66666677777766554    49999999865

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.62  E-value=2.4e-07  Score=77.07  Aligned_cols=123  Identities=19%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc----c-ccCC------------------CCcceeeEEE-------EEEee
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----S-RASS------------------SGVTSTCEMQ-------RTVLK   66 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~----~-~~~~------------------~~~t~~~~~~-------~~~~~   66 (221)
                      ..+.+|+|+|++|+||||++..|.+.....    . +...                  .+........       .... 
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l-  267 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL-  267 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence            456799999999999999999887642110    0 0000                  0000000000       0111 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+....+|||+|....   .....+++... .. ....+-.++|++++....     .+..+...|..  ...--+++||
T Consensus       268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~~~-----~~~~~~~~f~~--~~~~~~I~TK  335 (420)
T PRK14721        268 RGKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSSGD-----TLDEVISAYQG--HGIHGCIITK  335 (420)
T ss_pred             cCCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCCHH-----HHHHHHHHhcC--CCCCEEEEEe
Confidence            4456899999998742   22233444332 22 223456778888772221     12222222221  2245689999


Q ss_pred             CCCCCC
Q 027618          147 GDELED  152 (221)
Q Consensus       147 ~D~~~~  152 (221)
                      .|....
T Consensus       336 lDEt~~  341 (420)
T PRK14721        336 VDEAAS  341 (420)
T ss_pred             eeCCCC
Confidence            998753

>PRK13796 GTPase YqeH; Provisional

Probab=98.61  E-value=6.3e-08  Score=79.81  Aligned_cols=59  Identities=29%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc----cccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ...+.++|.+|+|||||||+|++...    ........++|.......  +  +....++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l--~~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--L--DDGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--c--CCCcEEEECCCccc
Confidence            46899999999999999999986531    111123345555544332  2  23357999999974

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=4.9e-07  Score=65.88  Aligned_cols=120  Identities=20%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+.++++|..|.||||++++.+-...-.....+.+....+....-.. +..++.+|||.|.....+-.+         
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~-g~irf~~wdtagqEk~gglrd---------   77 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNR-GQIRFNVWDTAGQEKKGGLRD---------   77 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeeccc-CcEEEEeeecccceeeccccc---------
Confidence            4578999999999999999988765544222222233333333222222 336788999999765433222         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        -.+-+....++++++..+++-.. ..|.+.+.+.++.   .|+++++||.|--.
T Consensus        78 --gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   78 --GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA  128 (216)
T ss_pred             --ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence              11222346678888887777665 5677777776665   38999999999554

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.58  E-value=2.3e-07  Score=69.81  Aligned_cols=124  Identities=20%  Similarity=0.288  Sum_probs=78.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|.+|+||||+=..+.... ..-+....+.|......++.+..+.-+.+||.-|...      .+...+...-.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~------fmen~~~~q~d   76 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE------FMENYLSSQED   76 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH------HHHHHHhhcch
Confidence            4789999999999999765554322 2223345567777777777774456777899877431      11222222223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH----HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE----EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ..+..++++++|+|+..+--..|    +..++.+.+.   .....+...+.|.|+...
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~---SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN---SPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc---CCcceEEEEEeechhccc
Confidence            45677899999999974422222    4445555543   223368999999999864

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=5.7e-07  Score=76.27  Aligned_cols=122  Identities=17%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      -...+.|++.-+-.+||||+-+.++........                ....++|.........| ...++.+|||||+
T Consensus        36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGH  114 (721)
T ss_pred             hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCc
Confidence            356688999999999999999887765433211                11235667676677778 7899999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      .+|..+.+           .+++..|+.++|+++..+...+.....+++++.     ..|.+..+||+|+...+.
T Consensus       115 vDFT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  115 VDFTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGASP  173 (721)
T ss_pred             eeEEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCCh
Confidence            99876655           455666898999988778888888888888775     237889999999987544

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.57  E-value=2.7e-07  Score=76.32  Aligned_cols=124  Identities=19%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------cCC---------------CCcceeeE--EE----EEEeeCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASS---------------SGVTSTCE--MQ----RTVLKDGQ   69 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------~~~---------------~~~t~~~~--~~----~~~~~~~~   69 (221)
                      .+..++++|++|+||||++..|+.......+       ..+               .+......  ..    ... ..+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~  300 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGS  300 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCC
Confidence            3467899999999999999887643211000       000               00000000  00    000 1355


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      .++||||||+...   ......++...+.... +..+-.++|+++..... .....++    .|..  ...--+|+||.|
T Consensus       301 D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~----~f~~--~~~~glIlTKLD  370 (432)
T PRK12724        301 ELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLK----AYES--LNYRRILLTKLD  370 (432)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHH----HhcC--CCCCEEEEEccc
Confidence            7899999998642   2334445555443321 22456788888873321 1222322    2221  124669999999


Q ss_pred             CCCC
Q 027618          149 ELED  152 (221)
Q Consensus       149 ~~~~  152 (221)
                      ....
T Consensus       371 Et~~  374 (432)
T PRK12724        371 EADF  374 (432)
T ss_pred             CCCC
Confidence            8753

>PRK14974 cell division protein FtsY; Provisional

Probab=98.56  E-value=8.6e-07  Score=71.91  Aligned_cols=73  Identities=18%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..+++|||||...   .+.....++.......  .+|.+++|+++....  ......+.+.+..     ..--+++||.
T Consensus       222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g~--d~~~~a~~f~~~~-----~~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVT--KPDLVIFVGDALAGN--DAVEQAREFNEAV-----GIDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccC---CcHHHHHHHHHHHHhh--CCceEEEeeccccch--hHHHHHHHHHhcC-----CCCEEEEeee
Confidence            45689999999874   2344556665554332  468889999886321  2222223332221     2466999999


Q ss_pred             CCCCC
Q 027618          148 DELED  152 (221)
Q Consensus       148 D~~~~  152 (221)
                      |....
T Consensus       290 D~~~~  294 (336)
T PRK14974        290 DADAK  294 (336)
T ss_pred             cCCCC
Confidence            98653

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.55  E-value=1.6e-06  Score=72.69  Aligned_cols=71  Identities=18%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..++++||||....   ++...+++......  ..+|.+++|+++...     ...++..+. |... ....-+|+||.|
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc-----HHHHHHHHH-HHhc-CCCCEEEEeccc
Confidence            47899999998742   34455555555332  346889999998743     233344433 3322 123568899999


Q ss_pred             CCC
Q 027618          149 ELE  151 (221)
Q Consensus       149 ~~~  151 (221)
                      ...
T Consensus       244 ~~a  246 (437)
T PRK00771        244 GTA  246 (437)
T ss_pred             CCC
Confidence            753

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.54  E-value=2.5e-07  Score=65.22  Aligned_cols=120  Identities=17%  Similarity=0.078  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .-..+|+++|.+..|||||+-...+...........+.........+.. ....+.+||.-|..           +....
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~-t~IsfSIwdlgG~~-----------~~~n~   85 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRG-TDISFSIWDLGGQR-----------EFINM   85 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecc-eEEEEEEEecCCcH-----------hhhcc
Confidence            3458999999999999999988888765322222223222222222211 33467789987743           34455


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++.+...+-+++|++|.+.+.+... ..|.++.+.+   ..-.-.++|+||-|..-
T Consensus        86 lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~---NktAiPilvGTKyD~fi  138 (205)
T KOG1673|consen   86 LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGL---NKTAIPILVGTKYDLFI  138 (205)
T ss_pred             CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhcc---CCccceEEeccchHhhh
Confidence            6666777789999999986666554 4454444443   22223678999999764

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=3.7e-06  Score=67.08  Aligned_cols=116  Identities=17%  Similarity=0.275  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc---ccccc--cCCCCcceeeEEEEEEeeC--------CceEEEEeCCCCCCCCCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLKD--------GQVVNVIDTPGLFDFSAGS   86 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~--------~~~~~liDtPG~~~~~~~~   86 (221)
                      ..++++|+-.+|||||.++|....   .+...  ....+.|..........+.        .-+++++|+||...     
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas-----   82 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS-----   82 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence            889999999999999999985322   12111  1123334333333222211        23569999999642     


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        +.    +.+.-...-.|..++|+|+......+..+.+     ..|.-..+..+||+||.|.+.
T Consensus        83 --LI----RtiiggaqiiDlm~lviDv~kG~QtQtAEcL-----iig~~~c~klvvvinkid~lp  136 (522)
T KOG0461|consen   83 --LI----RTIIGGAQIIDLMILVIDVQKGKQTQTAECL-----IIGELLCKKLVVVINKIDVLP  136 (522)
T ss_pred             --HH----HHHHhhhheeeeeeEEEehhcccccccchhh-----hhhhhhccceEEEEecccccc
Confidence              22    2222233445899999999755544443332     122222346889999999886

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=3.3e-07  Score=65.82  Aligned_cols=122  Identities=14%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcc-cccc--cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....|+++|.-.|||||++.++=-... .-.+  ++...+|......++.. ....+.+||.-|..           .+
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-----------~l   82 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-----------SL   82 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-----------HH
Confidence            3447889999999999999976421110 0011  12233455556666666 67889999987743           22


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++.+...+..+|+++||+|+.++-..++ ...++.+.+. -.--..|+++..||-|+..
T Consensus        83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~  140 (197)
T KOG0076|consen   83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQN  140 (197)
T ss_pred             HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhh
Confidence            2333344455699999999985433333 2233333221 1111237999999999875

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.50  E-value=6.3e-07  Score=75.17  Aligned_cols=122  Identities=22%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceee------------------EEEE----------E-EeeCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTC------------------EMQR----------T-VLKDG   68 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~------------------~~~~----------~-~~~~~   68 (221)
                      +..++|+|++|+||||++..|+.... ...+....-.+..+                  ....          . .. .+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~  299 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RD  299 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CC
Confidence            46899999999999999877654322 10000000000000                  0000          0 11 34


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..++||||||....   +.....++...+... ....-.++|++++... ......++.+    ..-  ..--+++||.|
T Consensus       300 ~DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f----~~~--~~~~vI~TKlD  368 (424)
T PRK05703        300 CDVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHF----SRL--PLDGLIFTKLD  368 (424)
T ss_pred             CCEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHh----CCC--CCCEEEEeccc
Confidence            57899999998642   233344555554422 2235667777776221 1122333333    211  13469999999


Q ss_pred             CCCC
Q 027618          149 ELED  152 (221)
Q Consensus       149 ~~~~  152 (221)
                      ....
T Consensus       369 et~~  372 (424)
T PRK05703        369 ETSS  372 (424)
T ss_pred             cccc
Confidence            8653

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.50  E-value=1.2e-06  Score=71.51  Aligned_cols=124  Identities=19%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------cccCCCCc---------ceeeEEEEE-E----------e--e
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------SRASSSGV---------TSTCEMQRT-V----------L--K   66 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------~~~~~~~~---------t~~~~~~~~-~----------~--~   66 (221)
                      .++..++++|++|+||||++..|+......        .+....+.         ......... .          .  .
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~  283 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV  283 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence            346889999999999999998876432100        00000000         000000000 0          0  0


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+..++||||||...   .+.....++.......  .++.+++|+++.  ....+  ..+.+.. |..  ...--+|+||
T Consensus       284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TK  351 (407)
T PRK12726        284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITK  351 (407)
T ss_pred             CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEc
Confidence            245789999999864   2344455555544322  456767777653  22222  2233332 221  2246689999


Q ss_pred             CCCCCC
Q 027618          147 GDELED  152 (221)
Q Consensus       147 ~D~~~~  152 (221)
                      .|....
T Consensus       352 LDET~~  357 (407)
T PRK12726        352 MDETTR  357 (407)
T ss_pred             ccCCCC
Confidence            998753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.50  E-value=1.7e-07  Score=72.60  Aligned_cols=76  Identities=17%  Similarity=0.116  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEec
Q 027618           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+.++||||..+.    ..++..+...+.... ...-++++++|.....++...  ..+-.+.-.+  ...-|.+.|+||
T Consensus        92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~--~~~lP~vnvlsK  165 (238)
T PF03029_consen   92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML--RLELPHVNVLSK  165 (238)
T ss_dssp             SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH--HHTSEEEEEE--
T ss_pred             cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh--hCCCCEEEeeec
Confidence            6899999997642    112222222222221 233477888888722333331  1111111111  123489999999


Q ss_pred             CCCCC
Q 027618          147 GDELE  151 (221)
Q Consensus       147 ~D~~~  151 (221)
                      +|...
T Consensus       166 ~Dl~~  170 (238)
T PF03029_consen  166 IDLLS  170 (238)
T ss_dssp             GGGS-
T ss_pred             cCccc
Confidence            99987

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.48  E-value=1.3e-06  Score=70.24  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .....|+++|++|+|||||++.+..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.47  E-value=1.2e-06  Score=65.07  Aligned_cols=29  Identities=31%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~   53 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD   53 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            44789999999999999999999986543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2.9e-08  Score=80.61  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=85.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+.|+++.+-.+||||.-.+|+-.....-                .....+.|...-....+| ++.++.+|||||..+
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence            357899999999999999888764432110                112347788888888899 999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      |....+       +    |++..|+++.|+|++.+...+....+++-.+     ...|.+..+||+|+..
T Consensus       115 f~leve-------r----clrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  115 FRLEVE-------R----CLRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEEHH-------H----HHHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhh
Confidence            875544       4    4445599999999987777666444433322     3447888899999874

>PRK10867 signal recognition particle protein; Provisional

Probab=98.47  E-value=6e-06  Score=69.22  Aligned_cols=71  Identities=18%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||||....   ++....++.......  .++.+++|+++..  ........+.+.+.     ....-+|+||.
T Consensus       183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~-----~~i~giIlTKl  250 (433)
T PRK10867        183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEA-----LGLTGVILTKL  250 (433)
T ss_pred             CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhh-----CCCCEEEEeCc
Confidence            356899999997642   344455554443322  4577899998752  12222333333322     12356888999


Q ss_pred             CCC
Q 027618          148 DEL  150 (221)
Q Consensus       148 D~~  150 (221)
                      |..
T Consensus       251 D~~  253 (433)
T PRK10867        251 DGD  253 (433)
T ss_pred             cCc
Confidence            954

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.47  E-value=8.4e-07  Score=70.46  Aligned_cols=91  Identities=22%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFD   81 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~   81 (221)
                      ..+.+++||-+++||||++|+|+......  ...+.+|..+....+..+.                .-.+.++|.+|+..
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~--~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGA--ANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCc--cCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            44899999999999999999999887642  2344566666665544321                12488999999987


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      ..+..+-+...+.+.+    +++|+++-|+++.
T Consensus        97 GAs~G~GLGN~FLs~i----R~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHI----RHVDAIFHVVRAF  125 (391)
T ss_pred             CcccCcCchHHHHHhh----hhccceeEEEEec
Confidence            6555555666665554    4558998888753

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.47  E-value=7.9e-07  Score=75.17  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .+..++|+|++|+||||++..|++..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHH
Confidence            34789999999999999999988654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=2.2e-06  Score=68.18  Aligned_cols=120  Identities=18%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc------cc--------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+...|+-+|+-..|||||-.+|+....      +.        ......++|...-...++. ..+.+.-+|+||..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence            35568899999999999999888753211      00        0112335555544444444 567788999999764


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +       .    +-+..-..+-|+.|+|+.+.+..-++.++-+-..++. |.+   ++++.+||.|..+
T Consensus       130 Y-------I----KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~  184 (449)
T KOG0460|consen  130 Y-------I----KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVD  184 (449)
T ss_pred             H-------H----HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccC
Confidence            1       1    1111223445899999999999999988777655554 654   7999999999985

>TIGR00959 ffh signal recognition particle protein

Probab=98.40  E-value=6.9e-06  Score=68.81  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=41.3

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||||....   +.....++......  -.++.+++|+++..  ........+.+.+..     ...-+|+||.
T Consensus       182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI---DEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCcccc---CHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence            446899999997642   33445555444332  24678899999762  222233333333222     2356889999


Q ss_pred             CCC
Q 027618          148 DEL  150 (221)
Q Consensus       148 D~~  150 (221)
                      |..
T Consensus       250 D~~  252 (428)
T TIGR00959       250 DGD  252 (428)
T ss_pred             cCc
Confidence            954

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.39  E-value=3.8e-06  Score=71.46  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+..|+|+|++|+||||++..|..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999988765

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=3.6e-06  Score=66.54  Aligned_cols=120  Identities=19%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCccee-------------------------eEEEEEEeeCCce
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTST-------------------------CEMQRTVLKDGQV   70 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~-------------------------~~~~~~~~~~~~~   70 (221)
                      .+...|+++|+-..|||||..+|.|.-... +.....+.|..                         |........--+.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            456899999999999999999999864311 00000111111                         1100000012256


Q ss_pred             EEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618           71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (221)
Q Consensus        71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (221)
                      +.|+|.||+.       -+...+.    +-..--|+.++|+.+++++ .++.++-+-.| +..|..   +++++-||.|+
T Consensus        88 VSfVDaPGHe-------~LMATML----sGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDl  152 (415)
T COG5257          88 VSFVDAPGHE-------TLMATML----SGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDL  152 (415)
T ss_pred             EEEeeCCchH-------HHHHHHh----cchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccce
Confidence            8899999953       2222222    2223348999999998664 44445444444 344543   79999999999


Q ss_pred             CC
Q 027618          150 LE  151 (221)
Q Consensus       150 ~~  151 (221)
                      ..
T Consensus       153 V~  154 (415)
T COG5257         153 VS  154 (415)
T ss_pred             ec
Confidence            86

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.37  E-value=2.2e-06  Score=70.85  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc----------ccccCC---------------CCcceeeEEEE-------EEe
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF----------KSRASS---------------SGVTSTCEMQR-------TVL   65 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~----------~~~~~~---------------~~~t~~~~~~~-------~~~   65 (221)
                      .+..|+++|++|+||||++..|......          .....+               .+.........       ...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            3578999999999999999877642110          000000               01100000000       011


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (221)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (221)
                       .+..+++|||||....   +.....++...+....+ .+-.++|++++....  +  ..+.+... ..  ...--+++|
T Consensus       253 -~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~--~--~~~~~~~~-~~--~~~~~~I~T  320 (388)
T PRK12723        253 -KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTS--D--VKEIFHQF-SP--FSYKTVIFT  320 (388)
T ss_pred             -CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHH--H--HHHHHHHh-cC--CCCCEEEEE
Confidence             4567999999998742   22224455555443322 336788998874422  2  11233332 11  124569999


Q ss_pred             cCCCCCC
Q 027618          146 GGDELED  152 (221)
Q Consensus       146 k~D~~~~  152 (221)
                      |.|....
T Consensus       321 KlDet~~  327 (388)
T PRK12723        321 KLDETTC  327 (388)
T ss_pred             eccCCCc
Confidence            9998653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=5.3e-06  Score=60.36  Aligned_cols=22  Identities=41%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++++|..|+||||+++.++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            5789999999999999988765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.35  E-value=5.6e-07  Score=69.43  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..+|++.|++|+|||||++.|..
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHH
Confidence            4558999999999999999999753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.35  E-value=9.2e-06  Score=59.98  Aligned_cols=29  Identities=28%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~   53 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD   53 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            45789999999999999999999986543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.33  E-value=2.3e-06  Score=67.34  Aligned_cols=69  Identities=28%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (221)
                      .+..+.++|-+|+|||||||++.........    ....+.|....... .+.....++++||||...++....
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~i-ri~~rp~vy~iDTPGil~P~I~~~  214 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERI-RISHRPPVYLIDTPGILVPSIVDV  214 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhhe-EeccCCceEEecCCCcCCCCCCCH
Confidence            4589999999999999999998655432221    12345555554422 222677899999999987654443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.33  E-value=1.8e-05  Score=58.54  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      .++..++++|++|+|||||++.|+|...+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~   52 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN   52 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence            456899999999999999999999986543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.31  E-value=7.6e-07  Score=68.26  Aligned_cols=121  Identities=18%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -+++++|-+++||||++.-|+|..-.  ..+....|..+......+ .+..+.+.|.||+.+...+.....+++....+ 
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~--vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~qviavar-  135 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSE--VAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR-  135 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCc--cccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccEEEEEee-
Confidence            48999999999999999999987642  233344455555555556 88999999999998754433333333333333 


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cccEEEEEecCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDE  149 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ivv~tk~D~  149 (221)
                         -++.+++|+|+-.+++  .++.++.-.+.||-.. ..|.-+.+.|-|+
T Consensus       136 ---tcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdk  181 (358)
T KOG1487|consen  136 ---TCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDK  181 (358)
T ss_pred             ---cccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCcccccccc
Confidence               3378999999874543  4667777777777432 2244455555443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.29  E-value=1e-05  Score=63.75  Aligned_cols=123  Identities=18%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc---ccc-cCCCC---------cc----eeeEEEEEE-----------e--eC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF---KSR-ASSSG---------VT----STCEMQRTV-----------L--KD   67 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~---~~~-~~~~~---------~t----~~~~~~~~~-----------~--~~   67 (221)
                      +..+++++|++|+||||++..|++....   ... ....+         .+    .........           .  ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4579999999999999999887654211   000 00000         00    000000000           0  02


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||||....   +....+++.+.+...  .++-+++|++++.. .......++.+..      ...--+++||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~f~~------~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHHhCC------CCCCEEEEEee
Confidence            457899999998632   344555665554433  44678899987622 2222233333322      22466999999


Q ss_pred             CCCCC
Q 027618          148 DELED  152 (221)
Q Consensus       148 D~~~~  152 (221)
                      |....
T Consensus       222 Det~~  226 (270)
T PRK06731        222 DETAS  226 (270)
T ss_pred             cCCCC
Confidence            98753

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.28  E-value=6.2e-06  Score=60.89  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~   56 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPTS   56 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            447899999999999999999999865443

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.28  E-value=7.1e-06  Score=70.50  Aligned_cols=43  Identities=28%  Similarity=0.313  Sum_probs=31.9

Q ss_pred             CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..+-++.++.-..  +-+|+|||++|+|||||++.|.|...+..+
T Consensus        16 ~~l~~~~~l~~~~--G~riGLvG~NGaGKSTLLkilaG~~~~~~G   58 (530)
T COG0488          16 RPLLENVSLTLNP--GERIGLVGRNGAGKSTLLKILAGELEPDSG   58 (530)
T ss_pred             ceeecCCcceeCC--CCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence            3344444444333  489999999999999999999999865554

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.26  E-value=3e-06  Score=67.90  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +.++.++.-..+  ..++++|++|||||||++.|+|...+..+.. ..+......  ...+ .....++.+.|.++.
T Consensus        20 ~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~   91 (293)
T COG1131          20 ALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYP   91 (293)
T ss_pred             EEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCc
Confidence            344444544443  7899999999999999999999876544310 011000000  0111 334678899998775

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.21  E-value=0.00011  Score=60.82  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||.|-..   -++.+..++...-.  .-.||-+|+|+|+.....  .....+.+.+..+     -.-||+||.
T Consensus       182 ~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQd--A~~~A~aF~e~l~-----itGvIlTKl  249 (451)
T COG0541         182 GYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQD--AVNTAKAFNEALG-----ITGVILTKL  249 (451)
T ss_pred             CCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccchH--HHHHHHHHhhhcC-----CceEEEEcc
Confidence            34799999999874   35566777666533  346689999999763322  2334444444333     245899999


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      |-..
T Consensus       250 DGda  253 (451)
T COG0541         250 DGDA  253 (451)
T ss_pred             cCCC
Confidence            9653

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.18  E-value=1.1e-05  Score=59.49  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~   56 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS   56 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence            347899999999999999999999865433

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.18  E-value=1.8e-05  Score=57.85  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~   54 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKPDS   54 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            457899999999999999999999865433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.17  E-value=8.9e-06  Score=65.71  Aligned_cols=30  Identities=37%  Similarity=0.367  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++||+|||||||++.|.|...+.++
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G   58 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG   58 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            378899999999999999999999876554

>PRK01889 GTPase RsgA; Reviewed

Probab=98.17  E-value=2e-06  Score=70.66  Aligned_cols=59  Identities=34%  Similarity=0.458  Sum_probs=37.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +.+++++|.+|+|||||+|.|+|...+..+..      ....|.......+   . ....++||||+..
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l---~-~~~~l~DtpG~~~  259 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL---P-SGGLLIDTPGMRE  259 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe---c-CCCeecCCCchhh
Confidence            46899999999999999999998765443311      0112222222222   1 2246889999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.13  E-value=2.3e-06  Score=65.60  Aligned_cols=41  Identities=27%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +.+++++.-..  +..|+++|++|||||||+|.|.|...+..+
T Consensus        18 vl~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          18 VLEDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             EeccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34444444443  378999999999999999999999876655

>cd00066 G-alpha G protein alpha subunit

Probab=98.12  E-value=4e-05  Score=62.14  Aligned_cols=77  Identities=12%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC--------CCHHHHHHHHHHHHHhcc
Q 027618           63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGK  134 (221)
Q Consensus        63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~~~~  134 (221)
                      ..+ .+..+.++|++|...           .+..+..++..+++++||++.++-        ....-...+..+..++..
T Consensus       156 f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         156 FTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             EEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            344 567788999999542           123334566788999999998731        112224444555555443


Q ss_pred             c--ccccEEEEEecCCCCC
Q 027618          135 K--IFDYMIVVFTGGDELE  151 (221)
Q Consensus       135 ~--~~~~~ivv~tk~D~~~  151 (221)
                      +  ...|+++++||.|...
T Consensus       224 ~~~~~~pill~~NK~D~f~  242 (317)
T cd00066         224 RWFANTSIILFLNKKDLFE  242 (317)
T ss_pred             ccccCCCEEEEccChHHHH
Confidence            2  2348999999999775

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.11  E-value=6.9e-07  Score=68.10  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus         7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      -+++++.-++  +...+++|++||||||+++.|+|..-+..
T Consensus        18 v~~isf~v~~--G~i~GllG~NGAGKTTtfRmILglle~~~   56 (300)
T COG4152          18 VDNISFEVPP--GEIFGLLGPNGAGKTTTFRMILGLLEPTE   56 (300)
T ss_pred             ecceeeeecC--CeEEEeecCCCCCccchHHHHhccCCccC
Confidence            3444554444  48899999999999999999999865433

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.11  E-value=1.2e-05  Score=64.23  Aligned_cols=125  Identities=19%  Similarity=0.215  Sum_probs=70.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-------------c--------cCCCCcceee-EEEE----EE-----
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-------------R--------ASSSGVTSTC-EMQR----TV-----   64 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-------------~--------~~~~~~t~~~-~~~~----~~-----   64 (221)
                      .+.+..|+++|-+|+||||.|-.|+.......             +        ....+...-. ....    +-     
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            34578999999999999999988764322100             0        0000000000 0000    00     


Q ss_pred             --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc----CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618           65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (221)
Q Consensus        65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (221)
                        -.++..++++||.|-..   ....+..++.+..+.+-    ..+|-+++|+|+..+..  ...-.+.+.+..+.    
T Consensus       216 ~Akar~~DvvliDTAGRLh---nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn--al~QAk~F~eav~l----  286 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLH---NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN--ALSQAKIFNEAVGL----  286 (340)
T ss_pred             HHHHcCCCEEEEeCccccc---CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh--HHHHHHHHHHhcCC----
Confidence              01556799999999873   34556666666654332    24577999999873332  22233444444332    


Q ss_pred             cEEEEEecCCCC
Q 027618          139 YMIVVFTGGDEL  150 (221)
Q Consensus       139 ~~ivv~tk~D~~  150 (221)
                       --+++||.|--
T Consensus       287 -~GiIlTKlDgt  297 (340)
T COG0552         287 -DGIILTKLDGT  297 (340)
T ss_pred             -ceEEEEecccC
Confidence             45899999943

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.09  E-value=3.1e-06  Score=68.60  Aligned_cols=64  Identities=25%  Similarity=0.332  Sum_probs=48.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      -....+++++|-+++||||+||+|........+. ..|.|...+...    -+..+.|+|.||+.-.+.
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~  312 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSI  312 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCC
Confidence            3556899999999999999999999888766653 345555554333    456788999999975443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.09  E-value=3.9e-06  Score=62.80  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=36.4

Q ss_pred             CCCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618            2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      .|+.+.++.+++..++  ..++++||+|+|||||++.|+|...+..
T Consensus        12 ~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~   55 (259)
T COG4559          12 AGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDS   55 (259)
T ss_pred             ecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCC
Confidence            4666777777777765  8899999999999999999999876544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.09  E-value=0.00031  Score=51.72  Aligned_cols=73  Identities=21%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||||....   ......++......  ..++.+++|+++...  .........+.+..+     ...+|+||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence            456889999997642   22334444333221  347899999998622  222233333333222     256888999


Q ss_pred             CCCCC
Q 027618          148 DELED  152 (221)
Q Consensus       148 D~~~~  152 (221)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            98764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.07  E-value=3.2e-06  Score=65.71  Aligned_cols=43  Identities=30%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +..+.+++++.-+.+  ..++++||+|||||||+++|+|...+..
T Consensus        14 ~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~   56 (258)
T COG1120          14 GKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKS   56 (258)
T ss_pred             CeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            344566666666653  7889999999999999999999766544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.07  E-value=5.8e-05  Score=65.01  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++-+|+++|++|+|||||++.|+|...+..+
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G  377 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG  377 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence            44589999999999999999999888766544

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.07  E-value=2.9e-05  Score=54.18  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (221)
                      |++.|++|+|||++++.++....                        ..+.-+|.+.+.+.  ...+..+.+...+..+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~------------------------~~~~~i~~~~~~~~--~~~~~~~~i~~~~~~~~   54 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG------------------------FPFIEIDGSELISS--YAGDSEQKIRDFFKKAK   54 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT------------------------SEEEEEETTHHHTS--STTHHHHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc------------------------cccccccccccccc--ccccccccccccccccc
Confidence            68899999999999999985431                        12334555544421  12233444555544433


Q ss_pred             CCC-cEEEEEEeCCCCCCHH--------HHHHHHHHHHHhccccc--ccEEEEEecCC
Q 027618          102 DGI-HAVLVVFSVRSRFSQE--------EEAALHSLQTLFGKKIF--DYMIVVFTGGD  148 (221)
Q Consensus       102 ~~~-~~il~v~~~~~~~~~~--------~~~~~~~l~~~~~~~~~--~~~ivv~tk~D  148 (221)
                      ... ..++++-+++ .+...        ....++.+...+.....  .+++++++-.+
T Consensus        55 ~~~~~~vl~iDe~d-~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   55 KSAKPCVLFIDEID-KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             HTSTSEEEEEETGG-GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             ccccceeeeeccch-hcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            332 5777777766 33322        35555666555443322  24666665444

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.07  E-value=7.3e-05  Score=56.25  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|+|||||++.|+|..
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44789999999999999999999986

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.06  E-value=4.2e-05  Score=56.95  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~   54 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS   54 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            447899999999999999999999875443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.06  E-value=2.1e-05  Score=56.52  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|++|+||||++..+...
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~   22 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITA   22 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999887554

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5.6e-05  Score=64.42  Aligned_cols=40  Identities=35%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..+.+++-+.  +..++++|++|+|||||++.|+|...+..+
T Consensus       337 l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~~~~G  376 (559)
T COG4988         337 LSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLAPTQG  376 (559)
T ss_pred             cCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence            3344444333  478999999999999999999999875443

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.04  E-value=4.9e-06  Score=60.86  Aligned_cols=32  Identities=31%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..+.+++++|++|+|||||+|.|.|...|.++
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G   54 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASG   54 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence            34578999999999999999999999887654

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.02  E-value=0.00011  Score=55.59  Aligned_cols=24  Identities=29%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+++++|++|+||||++++|.+.
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHH
Confidence            378999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.02  E-value=6.4e-05  Score=59.19  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +++..+|++.|.+|+|||||+..|.
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~   72 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALG   72 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHH
Confidence            3455899999999999999998874

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.02  E-value=1.2e-05  Score=69.76  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+++++|++|+|||||++.|+|...+..+
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G  390 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG  390 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4588999999999999999999998765444

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=1.6e-05  Score=55.51  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=73.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...++.++|--|+||||++-.+--.+     ....-+|.......+++ ++-++.++|.-|-.+           ++-.+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvge-----vvttkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW   79 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGE-----VVTTKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW   79 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCc-----ccccCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence            56889999999999999764432111     11222344445555666 778889999877543           22344


Q ss_pred             HhhcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.++...+++|||+|..++  .+.....+...|++---..  ..++++.||.|...
T Consensus        80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~  133 (182)
T KOG0072|consen   80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSG  133 (182)
T ss_pred             HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchh
Confidence            4466778999999998744  4455566666665531111  25889999999764

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.00  E-value=5.8e-05  Score=54.74  Aligned_cols=27  Identities=37%  Similarity=0.458  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ++..++++|++|+|||||++.|.|...
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            347889999999999999999998764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.00  E-value=0.00015  Score=51.90  Aligned_cols=29  Identities=38%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      .++..++++|++|+|||||++.|+|...+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~   52 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP   52 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            34578899999999999999999998643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=2.3e-05  Score=59.68  Aligned_cols=126  Identities=17%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +-.++|++.|...+||||+-+-.....-|... -....|......++.. .-..+.+||.||..++-...-+.       
T Consensus        25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~-------   95 (347)
T KOG3887|consen   25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDY-------   95 (347)
T ss_pred             CCCceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCH-------
Confidence            33467999999999999987665544322211 0001111111111111 22467899999987542221111       


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                       ...++++.+++||+|+.+.+-..-......+..........++-|.+-|.|.+.+
T Consensus        96 -e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   96 -EMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             -HHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence             1344667899999998743322222222223332222233356788999998863

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.99  E-value=7.1e-05  Score=54.87  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   55 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGS   55 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999865433

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.98  E-value=0.00031  Score=53.11  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      .+++++|++|+|||||++.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            679999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.97  E-value=0.00017  Score=54.11  Aligned_cols=26  Identities=27%  Similarity=0.509  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.96  E-value=9.1e-06  Score=61.02  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .+..++++.-.  ++..++++||+|+|||||+++|-+...+.++
T Consensus        16 ~VLkgi~l~v~--~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G   57 (240)
T COG1126          16 EVLKGISLSVE--KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG   57 (240)
T ss_pred             EEecCcceeEc--CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence            33444444333  3488999999999999999999888766554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.95  E-value=8.6e-05  Score=56.15  Aligned_cols=27  Identities=30%  Similarity=0.543  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .++..++++|++|+|||||++.|+|..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345899999999999999999999973

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.94  E-value=4.8e-05  Score=56.42  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~   56 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ   56 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            347899999999999999999999865433

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.94  E-value=6.3e-06  Score=66.89  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      +......|+++|-+++||||+||.|-..++....+ ..+-|..-++..    --+++++||+||+.-.+.
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence            34556899999999999999999998887765543 334444333322    235788999999975543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.93  E-value=2.2e-06  Score=65.34  Aligned_cols=31  Identities=32%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++||+|+||||++|.|+|...+..+
T Consensus        29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G   59 (250)
T COG0411          29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG   59 (250)
T ss_pred             CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence            3478999999999999999999998876544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.93  E-value=9.2e-06  Score=57.42  Aligned_cols=30  Identities=30%  Similarity=0.364  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||+++|+|...+..
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~   39 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDS   39 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSHESE
T ss_pred             CCCEEEEEccCCCccccceeeecccccccc
Confidence            347899999999999999999999876533

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.91  E-value=2.6e-05  Score=57.80  Aligned_cols=29  Identities=31%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +..|+++|++|||||||+|.+.|...+..
T Consensus        31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~   59 (259)
T COG4525          31 GELVVVLGPSGCGKTTLLNLIAGFVTPSR   59 (259)
T ss_pred             CCEEEEEcCCCccHHHHHHHHhcCcCccc
Confidence            46889999999999999999999876543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.90  E-value=1.3e-05  Score=61.13  Aligned_cols=31  Identities=32%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..|+++||+|||||||+|.|-+-..+.++
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G   60 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG   60 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            4478999999999999999999888766443

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.88  E-value=0.00042  Score=52.93  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+++++.+....  .+++++.|++|+||||+++.+..
T Consensus        16 ~~vpnd~~l~~~~--~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          16 SFVPNDTEIGGGG--PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEcceEEecCCC--ceEEEEECCCCCChHHHHHHHHH
Confidence            4456776665432  37889999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.88  E-value=1.5e-05  Score=60.70  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~   55 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS   55 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999865433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.88  E-value=1.7e-05  Score=60.59  Aligned_cols=43  Identities=28%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCCCcccCCCC---CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            6 IDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         6 ~~~~~~~~~~~---~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ....|.+..-+   .++.+|+++|++|||||||++.|.|...|..+
T Consensus        37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134          37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            34444444432   44589999999999999999999998776554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.88  E-value=1.9e-06  Score=63.96  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .+..++++|++|+||||+++.|...-.|..+
T Consensus        27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G   57 (245)
T COG4555          27 EGEITGLLGENGAGKTTLLRMIATLLIPDSG   57 (245)
T ss_pred             cceEEEEEcCCCCCchhHHHHHHHhccCCCc
Confidence            3478999999999999999999877665444

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.87  E-value=1.5e-05  Score=59.67  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +..++++|++|+|||||++.|+|...+..
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~   46 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLLRPQS   46 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            47899999999999999999999865433

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.87  E-value=1.5e-05  Score=61.78  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~   54 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDS   54 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            447899999999999999999999865443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.87  E-value=1.5e-05  Score=61.72  Aligned_cols=41  Identities=29%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +.+++++.-+.+  ..++++||+|+|||||+++|+|.-.+..+
T Consensus        19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            344444433333  78899999999999999999996655444

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.86  E-value=3.1e-05  Score=59.14  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=39.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcc-eeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      .++.+++++|++|+|||||.+.|+|...+..+.. ..+.. .........+ +..++++-|..+-..+
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~-~~VQmVFQDp~~SLnP   97 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY-RPVQMVFQDPYSSLNP   97 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc-cceeEEecCCccccCc
Confidence            3458999999999999999999999887655421 11101 1111011112 5567777776655543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.85  E-value=1.7e-05  Score=60.58  Aligned_cols=31  Identities=16%  Similarity=0.215  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG   42 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG   42 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence            3478999999999999999999998654443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.85  E-value=1.8e-05  Score=60.68  Aligned_cols=30  Identities=33%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~   58 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS   58 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCc
Confidence            347899999999999999999999865433

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.84  E-value=1.8e-05  Score=60.05  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~   54 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIKESS   54 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence            447899999999999999999999865443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.83  E-value=2e-05  Score=60.21  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~   55 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALTPS   55 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            34789999999999999999999986543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.83  E-value=2e-05  Score=60.33  Aligned_cols=30  Identities=37%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   57 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTR   57 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            447899999999999999999999865433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.83  E-value=2e-05  Score=60.14  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~   54 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS   54 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            347899999999999999999999865433

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.83  E-value=0.00015  Score=57.15  Aligned_cols=67  Identities=28%  Similarity=0.276  Sum_probs=44.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~   82 (221)
                      ..+...|.++|+..+|||.|+|.|++.. .+..+....+.|.-......+.  .....+.++||.|+.+.
T Consensus        18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            3455788999999999999999999753 3333333344444433333222  13457999999999884

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.82  E-value=2.1e-05  Score=60.32  Aligned_cols=30  Identities=23%  Similarity=0.185  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~   54 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS   54 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            347899999999999999999999765433

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.82  E-value=0.00011  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +|+++|..|+|||+++.++....
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~~   24 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQFP   24 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcCC
Confidence            68999999999999999985443

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.81  E-value=2.2e-05  Score=59.61  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   52 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDS   52 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            347899999999999999999999865433

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.81  E-value=7.2e-05  Score=56.88  Aligned_cols=45  Identities=24%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618          102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ..+|.++.|+|.+ .-+-...+.++.|.+-.|   ..++.+|+||+|..
T Consensus       154 ~~vD~vivVvDpS-~~sl~taeri~~L~~elg---~k~i~~V~NKv~e~  198 (255)
T COG3640         154 EGVDLVIVVVDPS-YKSLRTAERIKELAEELG---IKRIFVVLNKVDEE  198 (255)
T ss_pred             cCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence            4679999999987 222223333333433334   35799999999955

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.81  E-value=2.1e-05  Score=60.37  Aligned_cols=30  Identities=37%  Similarity=0.339  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~   58 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS   58 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            447899999999999999999999865433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.81  E-value=0.00011  Score=64.58  Aligned_cols=30  Identities=30%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+++++|++|+|||||++.|+|.. +..+
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G  404 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQG  404 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence            45889999999999999999999987 5443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.80  E-value=2.3e-05  Score=60.11  Aligned_cols=30  Identities=30%  Similarity=0.331  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~   59 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS   59 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            447899999999999999999999865433

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.80  E-value=2.4e-05  Score=59.66  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~   54 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDS   54 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            457899999999999999999999865433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.79  E-value=2.5e-05  Score=58.80  Aligned_cols=30  Identities=27%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   54 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSS   54 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999865443

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.79  E-value=2.4e-05  Score=59.70  Aligned_cols=30  Identities=33%  Similarity=0.323  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~   55 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTS   55 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence            447899999999999999999999865433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.79  E-value=1.6e-05  Score=69.87  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--------------------------------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------   52 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~--------------------------------------------   52 (221)
                      -.-+.|+++|..++||||.++++.|..+.+.+....                                            
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            344789999999999999999999976543321110                                            


Q ss_pred             ---------CcceeeEEEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH
Q 027618           53 ---------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  121 (221)
Q Consensus        53 ---------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  121 (221)
                               +....+..-.+..+.-..++++|.||+....  ...+++..++...+.......+.+++++... ......
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~at  185 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIAT  185 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhhc
Confidence                     0000011111222233468999999998643  3445688888888888888888888877654 222333


Q ss_pred             HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          122 EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+++..++. . +.....+.|+||.|..+
T Consensus       186 s~alkiarev-D-p~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  186 SPALVVAREV-D-PGGSRTLEVITKFDFMD  213 (657)
T ss_pred             CHHHHHHHhh-C-CCccchhHHhhhHHhhh
Confidence            4566666664 2 22336889999999875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.79  E-value=2.6e-05  Score=59.39  Aligned_cols=29  Identities=31%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~   53 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIILPD   53 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            45789999999999999999999986443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=2.5e-05  Score=61.35  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578999999999999999999998654433

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.79  E-value=0.00022  Score=54.29  Aligned_cols=77  Identities=19%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC--CCCHHH---HHHHHHHHHHhcccccccEEE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE---EAALHSLQTLFGKKIFDYMIV  142 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~iv  142 (221)
                      ....+++|.||.-+.-......+.-++..-+.     +.=+.+++..+  -++...   ...+-.+..++.-.  -|-+=
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~-----~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~me--lphVN  168 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKL-----DYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHME--LPHVN  168 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHc-----CceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhc--ccchh
Confidence            45789999999887544444443333333221     22233333221  122222   22222233333323  26778


Q ss_pred             EEecCCCCC
Q 027618          143 VFTGGDELE  151 (221)
Q Consensus       143 v~tk~D~~~  151 (221)
                      |++|+|.+.
T Consensus       169 vlSK~Dl~~  177 (290)
T KOG1533|consen  169 VLSKADLLK  177 (290)
T ss_pred             hhhHhHHHH
Confidence            899999875

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.78  E-value=2.5e-05  Score=59.57  Aligned_cols=30  Identities=33%  Similarity=0.373  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~   53 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTS   53 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence            457899999999999999999999865433

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.00016  Score=58.74  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc-------------ccccc----CC-CCcceeeEEEEEEe------------
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------------FKSRA----SS-SGVTSTCEMQRTVL------------   65 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~-------------~~~~~----~~-~~~t~~~~~~~~~~------------   65 (221)
                      ...+-.|+++|-.|+||||.+-.+.....             +..+.    .. ...+..+.+..+..            
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            45567899999999999999877654321             00000    00 00111111111100            


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618           66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (221)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (221)
                         ..+..+.++||.|-..   .+.++.+++.++...  -.+|.+|+|.|++-....+.  ..+.+++..+     -.-+
T Consensus       178 ~fKke~fdvIIvDTSGRh~---qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaae~--Qa~aFk~~vd-----vg~v  245 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHK---QEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAAEA--QARAFKETVD-----VGAV  245 (483)
T ss_pred             HHHhcCCcEEEEeCCCchh---hhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhHHH--HHHHHHHhhc-----cceE
Confidence               1344699999999873   345677777777543  45799999999984443333  2223333211     2446


Q ss_pred             EEecCCCC
Q 027618          143 VFTGGDEL  150 (221)
Q Consensus       143 v~tk~D~~  150 (221)
                      ++||.|-.
T Consensus       246 IlTKlDGh  253 (483)
T KOG0780|consen  246 ILTKLDGH  253 (483)
T ss_pred             EEEecccC
Confidence            77777754

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.78  E-value=2.6e-05  Score=59.78  Aligned_cols=30  Identities=27%  Similarity=0.314  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   56 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTS   56 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            347899999999999999999999865443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.78  E-value=2.7e-05  Score=46.82  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...++.|++|+||||++.++.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998753

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.78  E-value=2.7e-05  Score=60.26  Aligned_cols=30  Identities=33%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   54 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDS   54 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            447899999999999999999999865443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.78  E-value=2.8e-05  Score=58.82  Aligned_cols=31  Identities=23%  Similarity=0.204  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4589999999999999999999998654443

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.78  E-value=2.8e-05  Score=59.74  Aligned_cols=30  Identities=33%  Similarity=0.495  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   54 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRS   54 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            458899999999999999999999865433

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.78  E-value=2.7e-05  Score=60.25  Aligned_cols=30  Identities=30%  Similarity=0.341  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   59 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS   59 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            457899999999999999999999875443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.78  E-value=0.00015  Score=48.95  Aligned_cols=99  Identities=17%  Similarity=0.086  Sum_probs=52.5

Q ss_pred             cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCc
Q 027618           26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH  105 (221)
Q Consensus        26 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (221)
                      ++.|+||||+.-.|........+.       .......+...+..++++|||+....             .....+..+|
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~-------~~~l~d~d~~~~~D~IIiDtpp~~~~-------------~~~~~l~~aD   66 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGR-------RVLLVDLDLQFGDDYVVVDLGRSLDE-------------VSLAALDQAD   66 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCC-------cEEEEECCCCCCCCEEEEeCCCCcCH-------------HHHHHHHHcC
Confidence            669999999876654332111010       00011111112237889999987641             1112334458


Q ss_pred             EEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618          106 AVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus       106 ~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .++++++.+ ..+... ..+++.+++. +.+...++.+|+|+
T Consensus        67 ~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          67 RVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             eEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            999999887 444333 5666666654 32212357777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.78  E-value=2.7e-05  Score=60.03  Aligned_cols=30  Identities=40%  Similarity=0.494  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   59 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLKPTS   59 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            447999999999999999999999865443

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.77  E-value=2.9e-05  Score=58.58  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   54 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS   54 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            457899999999999999999999865433

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.77  E-value=2.7e-05  Score=60.66  Aligned_cols=30  Identities=27%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~   56 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSS   56 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence            347899999999999999999999865433

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.77  E-value=2.7e-05  Score=62.73  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   48 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG   48 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4478999999999999999999998655443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.77  E-value=2.9e-05  Score=60.28  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   56 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEG   56 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            4578999999999999999999998654443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.76  E-value=2.7e-05  Score=59.39  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      .++++|++|+|||||++.|+|...+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~   53 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSS   53 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            899999999999999999999765433

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.76  E-value=0.0001  Score=64.86  Aligned_cols=31  Identities=32%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+++++|++|+|||||++.|+|...+..+
T Consensus       366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G  396 (592)
T PRK10790        366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEG  396 (592)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence            3478999999999999999999998766543

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.76  E-value=3.1e-05  Score=59.11  Aligned_cols=30  Identities=37%  Similarity=0.413  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   54 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTS   54 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            457899999999999999999999865433

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.76  E-value=3e-05  Score=60.89  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      -.++..++++|++|+|||||++.|+|...+..+
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G   55 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG   55 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            345689999999999999999999999765544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.75  E-value=3.2e-05  Score=58.54  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   54 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSPPLA   54 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            458999999999999999999999865443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=3e-05  Score=60.03  Aligned_cols=29  Identities=24%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~   62 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPT   62 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            34789999999999999999999986543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.75  E-value=3.1e-05  Score=59.74  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~   64 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDDGSS   64 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence            457999999999999999999999865443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.75  E-value=3.3e-05  Score=58.74  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   56 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA   56 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            458899999999999999999999865433

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.75  E-value=3.2e-05  Score=60.43  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++..++++|++|+|||||++.|+|...+..+
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G   54 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEG   54 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence            35688999999999999999999998654443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.75  E-value=3.1e-05  Score=60.19  Aligned_cols=30  Identities=30%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   56 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLERPDS   56 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            447899999999999999999999865433

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.75  E-value=2.7e-05  Score=57.57  Aligned_cols=24  Identities=38%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++.+++++|++|+|||||++.+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            347899999999999999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.74  E-value=3.3e-05  Score=59.34  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   56 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA   56 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            458899999999999999999999865433

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.74  E-value=3.3e-05  Score=59.65  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   54 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS   54 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            458999999999999999999999875443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.74  E-value=3.5e-05  Score=58.46  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~   55 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARPDA   55 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            447899999999999999999999865443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.74  E-value=3.2e-05  Score=60.00  Aligned_cols=30  Identities=30%  Similarity=0.222  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~   54 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS   54 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence            457899999999999999999999764433

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00047  Score=57.33  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..+|++|||+|+|||||+..|+|...+..+
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G  642 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDG  642 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence            358999999999999999999998776544

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.74  E-value=3.4e-05  Score=60.03  Aligned_cols=30  Identities=30%  Similarity=0.311  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   55 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTS   55 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence            347899999999999999999999865433

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.73  E-value=3.8e-05  Score=57.06  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      ++..++++|++|+|||||++.|+|...+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~   51 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKP   51 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4578999999999999999999997644

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.73  E-value=3.6e-05  Score=59.95  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|.|...+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~   57 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDA   57 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            457899999999999999999999865443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.73  E-value=3.6e-05  Score=59.34  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   61 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLISPTS   61 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence            347899999999999999999999765433

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.73  E-value=3.5e-05  Score=60.62  Aligned_cols=30  Identities=30%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~   66 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSA   66 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            347899999999999999999999865443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.73  E-value=3.7e-05  Score=59.48  Aligned_cols=31  Identities=32%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   40 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSG   40 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3478999999999999999999998754433

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.72  E-value=3.2e-05  Score=59.62  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45789999999999999999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=3.6e-05  Score=59.94  Aligned_cols=30  Identities=30%  Similarity=0.294  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   56 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRS   56 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            457899999999999999999999865433

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.72  E-value=3.4e-05  Score=63.13  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G   96 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGMTSPDAG   96 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence            3488999999999999999999998765443

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.72  E-value=3.9e-05  Score=58.17  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      .+..++++|++|+|||||+++|+|...+.
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~   56 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVRPR   56 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            44789999999999999999999987643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.72  E-value=3.8e-05  Score=58.53  Aligned_cols=31  Identities=32%  Similarity=0.371  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      .++..++++|++|+|||||++.|+|...+..
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~   52 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQS   52 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            3457899999999999999999999865433

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.72  E-value=3.9e-05  Score=58.77  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   59 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDA   59 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence            347899999999999999999999865433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.72  E-value=3.9e-05  Score=58.34  Aligned_cols=30  Identities=30%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~   54 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDS   54 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence            457899999999999999999999865433

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.71  E-value=3.7e-05  Score=61.02  Aligned_cols=30  Identities=33%  Similarity=0.483  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   61 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVRLAS   61 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            457899999999999999999999865443

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.71  E-value=3.8e-05  Score=60.88  Aligned_cols=31  Identities=26%  Similarity=0.155  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKG   56 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence            3478999999999999999999998655443

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.71  E-value=3.7e-05  Score=61.96  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~   58 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMISPDR   58 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            347899999999999999999999865433

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.71  E-value=4e-05  Score=59.13  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            3478999999999999999999998754433

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.71  E-value=2.5e-05  Score=57.39  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .+.-+++.||+|+||||++++|+...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            45788999999999999999998776

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.71  E-value=3.1e-05  Score=60.21  Aligned_cols=30  Identities=30%  Similarity=0.288  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +-+++++|++||||||+++.|+|...+.++
T Consensus        50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G   79 (325)
T COG4586          50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSG   79 (325)
T ss_pred             CcEEEEEcCCCCcchhhHHHHhCccccCCC
Confidence            478999999999999999999999877655

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.70  E-value=4.2e-05  Score=58.48  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~   65 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES   65 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence            457899999999999999999999865443

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.70  E-value=4.2e-05  Score=59.59  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~   55 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTS   55 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            447899999999999999999999865433

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.70  E-value=4.1e-05  Score=60.03  Aligned_cols=30  Identities=30%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~   58 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDE   58 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            457899999999999999999999865433

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.70  E-value=4.3e-05  Score=59.51  Aligned_cols=30  Identities=27%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~   57 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTE   57 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            347899999999999999999999865433

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.69  E-value=4.3e-05  Score=59.15  Aligned_cols=31  Identities=39%  Similarity=0.379  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            4578999999999999999999998755433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.69  E-value=4.3e-05  Score=60.53  Aligned_cols=30  Identities=27%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~   78 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS   78 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999865433

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.69  E-value=4.4e-05  Score=59.77  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|+|||||++.|+|...+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~   56 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQPE   56 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            45789999999999999999999986543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.69  E-value=0.00014  Score=54.40  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH---HHHHHHHHhcccccccEEEEE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA---ALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivv~  144 (221)
                      ...+.++|+||..+--. +-.+...+.+.+....-.+ .++|+++.. -+....+.   .+..+.......  .|.|=|+
T Consensus        97 eddylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE--~P~INvl  171 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISLE--VPHINVL  171 (273)
T ss_pred             cCCEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhc--Ccchhhh
Confidence            44688999999876322 2234555555554422222 455666544 33333322   222233322222  3788899


Q ss_pred             ecCCCCCCC-hhhHHHHhcc
Q 027618          145 TGGDELEDN-DETLEDYLGR  163 (221)
Q Consensus       145 tk~D~~~~~-~~~~~~~l~~  163 (221)
                      +|+|++++. ...++.|+..
T Consensus       172 sKMDLlk~~~k~~l~~Fl~~  191 (273)
T KOG1534|consen  172 SKMDLLKDKNKKELERFLNP  191 (273)
T ss_pred             hHHHHhhhhhHHHHHHhcCC
Confidence            999999731 2567777763

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.69  E-value=4.1e-05  Score=61.79  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G   62 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAG   62 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3478999999999999999999998765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		2e-20
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		5e-16
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		5e-16
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		8e-16
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		2e-15
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-14
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		7e-04
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		8e-04
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		9e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVF 144
           +   + I++F
Sbjct: 143 RARSFXILIF 152

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AMGHTIVLF 145

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 120 AMGHTIVLF 128

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
           E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 139 YMIVVF 144
           + IV+F
Sbjct: 120 HTIVLF 125

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP  F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AXGHTIVLF 145

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 139 YMIVVF 144
           +M++VF
Sbjct: 140 WMVIVF 145

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +   + LK  +  +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFE 198

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +     LK  +  +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 37  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 95  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +     LK  +  +K+R Q+FE
Sbjct: 151 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	7e-51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-49
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-49
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	4e-48
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	4e-45
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  165 bits (418), Expect = 7e-51
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
           +L        TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  
Sbjct: 28  KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFT 85

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130
           +N+IDTPGL +    +    + I   +      +   +    V     + ++  + ++  
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQ 144

Query: 131 LFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            FGK+I+   ++V T       ++ + E +  +     LK 
Sbjct: 145 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKT 185

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  160 bits (407), Expect = 1e-49
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 18/205 (8%)

Query: 14  SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV 73
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133
           +DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKRE 193
           ++   +MI++FT  D+L   D  L DYL RE P+ ++       D+   +++    +++E
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQE 198

Query: 194 --ISELKEQMHKSYEDQLKRITEMV 216
              ++L           L  I  +V
Sbjct: 199 AQRAQL-----------LGLIQRVV 212

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  161 bits (409), Expect = 2e-49
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 3   GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
              ++    L        T++++G+ G GKS+T NSI+G R        S       + R
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
           +    ++   FGK I++  IV  T       +    +++  +     L+
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  157 bits (399), Expect = 4e-48
 Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 13/213 (6%)

Query: 4   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT 63
           S      +    S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   + 
Sbjct: 7   SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66

Query: 64  VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 123
                + + +IDTP +F +    E + KE+ +C  ++  G H +L+V  +  R++ +++ 
Sbjct: 67  SW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQ 124

Query: 124 ALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEV 183
           A   ++ +FG+    + IV+FT  ++L     +L DY+     K L K       +    
Sbjct: 125 AAQRVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAF 182

Query: 184 DSLKGYSKREISELKEQMHKSYEDQLKRITEMV 216
           +     ++ E S   +Q+    ++ +  I +++
Sbjct: 183 N-----NRAEGSNQDDQV----KELMDCIEDLL 206

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 60.9 bits (147), Expect = 3e-11
 Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 26/203 (12%)

Query: 12  LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQV 70
           L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +   
Sbjct: 62  LKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPN 121

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130
           V   D PG+   +   +   +++                +    +RF + +     ++  
Sbjct: 122 VVFWDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM 173

Query: 131 LFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKGATKLRDQQ 180
              K+       V T  D    N+          E +   +   C    ++    + +  
Sbjct: 174 -MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE--NGIAEPP 226

Query: 181 FEVDSLKGYSKREISELKEQMHK 203
             + S K     +   L +++  
Sbjct: 227 IFLLSNKNVCHYDFPVLMDKLIS 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 41/224 (18%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGV----TSTCEMQRTVLKDGQVVNV 73
            + V++ G  G+GK+     +    ++K        +       C    TVL+  Q +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 74  IDTPGLFDFSAGSEFV------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
              P     S  S  +       +  ++ +  +K   + +LV+ +V++  ++   A   S
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS 265

Query: 128 LQTLF---GKKIFDYMIVVFTGGDELEDN------DETLE---DYLGREC---PKPLKKG 172
            + L     K++ D++    T    L+ +      DE       YL       P+ +   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 173 --------ATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQ 208
                   A  +RD    + +   +      +L   +  S    
Sbjct: 326 NPRRLSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.95
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.94
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.91
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.8
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.8
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.79
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.79
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.78
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.77
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.77
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.76
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.76
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.76
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.75
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.75
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.75
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.75
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.75
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.75
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.75
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.75
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.74
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.74
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.74
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.74
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.73
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.73
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.73
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.73
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.72
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.72
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.72
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.72
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.72
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.72
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.72
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.72
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.72
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.71
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.71
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.71
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.71
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.71
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.71
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.71
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.71
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.71
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.7
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.7
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.7
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.7
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.7
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.7
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.7
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.7
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.69
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.69
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.69
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.69
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.69
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.69
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.69
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.69
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.69
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.69
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.68
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.68
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.68
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.68
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.68
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.67
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.67
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.67
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.67
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.67
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.67
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.66
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.66
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.66
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.66
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.66
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.66
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.66
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.66
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.65
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.65
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.64
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.64
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.64
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.63
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.63
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.63
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.62
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.62
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.6
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.6
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.6
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.59
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.59
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.58
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.56
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.56
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.56
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.55
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.55
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.55
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.55
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.31
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.54
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.54
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.54
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.54
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.54
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.53
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.53
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.53
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.52
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.52
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.52
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.51
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.51
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.5
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.5
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.5
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.5
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.49
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.49
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.48
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.48
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.47
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.47
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.46
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.43
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.43
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.42
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.4
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.4
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.39
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.39
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.39
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.39
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.36
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.34
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.3
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.22
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.21
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.2
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.18
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.17
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.15
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.11
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.08
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.05
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.98
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.93
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.8
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.79
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.76
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.72
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.63
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.6
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.59
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.56
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.53
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.51
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.47
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.41
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.41
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.4
2xxa_A	433	Signal recognition particle protein; protein trans	98.38
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.27
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.26
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.26
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.23
2og2_A	359	Putative signal recognition particle receptor; nuc	98.23
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.12
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.09
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.02
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.98
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.98
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.94
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.93
1g6h_A	257	High-affinity branched-chain amino acid transport	97.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.9
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.88
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.88
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.88
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.83
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.82
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.79
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.79
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.79
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.79
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.78
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.77
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.77
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.75
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.75
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.74
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.74
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.73
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.72
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.72
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.72
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.72
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.7
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.68
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.67
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.66
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.63
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.63
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.62
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.62
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.59
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.58
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.57
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.57
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.57
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.57
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.55
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.53
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.53
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.52
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.52
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.5
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.49
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.48
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.48
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.47
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.46
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.46
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.43
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.43
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.43
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.41
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.41
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.4
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.4
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.4
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.39
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.39
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.38
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.35
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.35
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.34
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.33
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.32
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.31
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.31
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.31
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.3
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.29
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.28
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.26
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.26
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.25
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.25
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.23
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.22
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.22
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.19
3end_A	307	Light-independent protochlorophyllide reductase ir	97.18
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.18
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.18
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.16
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.16
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.16
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.13
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.12
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.09
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.06
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.03
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.02
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.02
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.02
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.0
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.99
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.97
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.97
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.96
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.94
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.94
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.93
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.92
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.9
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.9
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.89
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.85
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.84
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.84
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.84
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.83
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.82
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.81
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.81
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.77
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.77
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.74
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.72
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.71
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.69
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.68
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.68
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.68
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.67
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.67
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.66
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.65
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.62
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.62
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.61
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.6
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.59
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.59
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.58
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.57
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.56
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.55
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.53
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.53
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.52
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.52
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.5
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.5
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.49
1via_A	175	Shikimate kinase; structural genomics, transferase	96.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.45
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.44
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.44
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.44
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.44
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.43
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.41
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.4
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.4
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.37
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.37
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.36
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.34
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.34
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.34
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.33
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.33
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.33
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.32
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.31
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.3
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.29
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.29
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.29
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.24
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.23
3bos_A	242	Putative DNA replication factor; P-loop containing	96.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.23
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.22
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.2
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.2
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.19
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.18
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.15
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.13
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.12
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.12
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.1
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.07
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.06
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.03
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.97
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.96
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.95
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.94
3pvs_A	447	Replication-associated recombination protein A; ma	95.93
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.89
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.84
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.8
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.78
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.7
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.63
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.61
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.61

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=178.16  Aligned_cols=186  Identities=37%  Similarity=0.631  Sum_probs=115.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +....++|+|+|++|+|||||+|+|+|...+.......+.|..+......+ .+..+.||||||+.+......+..+++.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            345568999999999999999999999887655544446777777777777 8889999999999987777777788899


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhh----
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK----  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~----  170 (221)
                      .++..+.+.+|++|+|++++ +++..+..++..+.+.++.....|+++|+||+|+..  ...+++|+.. ....++    
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~i~~-~~~~l~~l~~  179 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG--DTNLHDYLRE-APEDIQDLMD  179 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC--cccHHHHHHh-chHHHHHHHH
Confidence            99888889999999999998 788888899999998888766678999999999886  4444444432 111111    


Q ss_pred             --------------------hhHHHHHhHHHHHHhcCC--CCHHHHHHHHHHHHhcH
Q 027618          171 --------------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMHKSY  205 (221)
Q Consensus       171 --------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  205 (221)
                                          .-...+..+.+++.++++  |+.+.+++.++++.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~~  236 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT  236 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC----------------
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence                                112233444555555555  88887777776655443

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.91  E-value=1.4e-22  Score=158.41  Aligned_cols=136  Identities=33%  Similarity=0.580  Sum_probs=109.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ++.....+|+++|++|+|||||+|+|++...+.....+.+.|..+......+ .+..+.||||||+.++........+.+
T Consensus        17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            3445668999999999999999999999886555444444666677667777 888999999999998777666666777


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~~~  151 (221)
                      ..++..+++.+|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+..
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~  153 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG  153 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred             HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence            888888889999999999999 688888888899999888665567888887 999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.86  E-value=1.7e-20  Score=146.66  Aligned_cols=143  Identities=22%  Similarity=0.314  Sum_probs=109.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.++....+...+.+..+
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35689999999999999999999998753332 2334455566666666 888999999999988766665555555555


Q ss_pred             HHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618           97 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (221)
                      +  ..+.+|++++|++++. +++..+..+++.+.+.++...+.|+++|+||+|+...+...+++|+.+
T Consensus       112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence            4  3357899999998863 577777899999999988877779999999999875446677777763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.85  E-value=4.1e-20  Score=145.17  Aligned_cols=142  Identities=23%  Similarity=0.326  Sum_probs=103.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++....... ...+.|..+....... .+..+.+|||||+.++..........+..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            34689999999999999999999998753332 2233444444455555 788999999999987655444444444333


Q ss_pred             HHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                      +  ..+.+|+++||++++. +++..+..+++.+.+.++...+.|+++|+||+|....++..+++|+.
T Consensus       115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~  179 (270)
T 1h65_A          115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS  179 (270)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred             h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence            2  2457899999998863 57777889999999888877667999999999987633446667665

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.80  E-value=2.2e-18  Score=137.14  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ...|+++|++|+|||||+|+|++........ ..++|.........+ .+.++.+|||||+.++.   ..+.+.+.....
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence            4679999999999999999999987643221 223344443334444 78899999999998643   244555667777


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+++.+|++++|+|++++++..+..+++.+.+..+   ..|+++|+||+|+..
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~  131 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAK  131 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCC
Confidence            78899999999999988888887766666665321   248999999999876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.80  E-value=4.9e-18  Score=129.98  Aligned_cols=165  Identities=14%  Similarity=0.053  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|++|+|||||+|+|++......  ...+.|.........+ .+..+.+|||||..+..........  ..
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~--~~  100 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE--MT  100 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH--HH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH--HH
Confidence            35569999999999999999999999875422  2233455555555555 6788999999999764322211110  11


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh------hHHHHhcccC--Cc
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE------TLEDYLGREC--PK  167 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~------~~~~~l~~~~--~~  167 (221)
                      .+......+|++++|+|++++.+.....+..++..........|+++|+||+|+......      ...++.....  ..
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK  180 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence            222335677999999999866554333333444433222123489999999998753211      2334444221  34


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      .+..++....++.+.++.
T Consensus       181 ~~~~SA~~g~gi~~l~~~  198 (228)
T 2qu8_A          181 FSSFSTLTGVGVEQAKIT  198 (228)
T ss_dssp             EEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHH
Confidence            555666666666666665

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.80  E-value=1e-18  Score=139.64  Aligned_cols=129  Identities=19%  Similarity=0.295  Sum_probs=96.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      +++.+...|+++|.+|||||||+|+|+|....... ...++|.......... . +..+.+|||||+.++. ......+.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence            34555689999999999999999999998864332 2334555555555555 5 8899999999998754 22345666


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCC
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      +...+..++..+|++++|+|+++..+..+... ++.+..     ...|+++|+||+|+.
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence            76777777788899999999998888887655 655554     134899999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.79  E-value=2e-18  Score=131.38  Aligned_cols=131  Identities=12%  Similarity=0.172  Sum_probs=91.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (221)
                      ....++|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+......  .....+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            345689999999999999999999998632122233345555555555422567899999999876433222  222333


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..........+|++++|+|+.+.++..+..+++.+.+.     ..|+++|+||+|+..
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~  158 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT  158 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence            33333345667999999999988888888877777651     347999999999886

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.79  E-value=2.2e-18  Score=126.62  Aligned_cols=153  Identities=18%  Similarity=0.180  Sum_probs=96.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|+|++......  ...+.+.......+.+ .+  ..+.+|||||...+.....      
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~------   76 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITS------   76 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCG------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHH------
Confidence            34568999999999999999999998775422  2233344444444545 55  5788999999765443322      


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL  169 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l  169 (221)
                           ..++.+|++++|+|++++.+... ..++..+.....   ..|+++|+||+|+....   ......+........+
T Consensus        77 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (181)
T 3tw8_B           77 -----TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF  148 (181)
T ss_dssp             -----GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             -----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence                 46688899999999986433333 345555544322   34899999999976421   2233444433233445


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       149 ~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B          149 ETSAKENVNVEEMFNC  164 (181)
T ss_dssp             ECBTTTTBSHHHHHHH
T ss_pred             EEECCCCCCHHHHHHH
Confidence            5566655556555554

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.79  E-value=5.6e-18  Score=124.25  Aligned_cols=127  Identities=17%  Similarity=0.236  Sum_probs=87.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|++++.......  ..+.+.......+.+ .+..+.+|||||...+.....         
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~---------   73 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRA---------   73 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCC---------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHH---------
Confidence            45689999999999999999999987754322  222333333344555 778899999999876543322         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                        ..+..+|++++|+|+++.........+..+.   ..  ..|+++|+||+|+...+...+...+.
T Consensus        74 --~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~  132 (178)
T 2lkc_A           74 --RGAQVTDIVILVVAADDGVMPQTVEAINHAK---AA--NVPIIVAINKMDKPEANPDRVMQELM  132 (178)
T ss_dssp             --SSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GG--SCCEEEEEETTTSSCSCHHHHHHHHT
T ss_pred             --HHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hC--CCCEEEEEECccCCcCCHHHHHHHHH
Confidence              4567889999999998766665555544332   22  34899999999987643344444443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.78  E-value=2e-18  Score=124.54  Aligned_cols=153  Identities=23%  Similarity=0.239  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.+|||||......    ....+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            68999999999999999999987642222 2233444455555556 777899999999886432    12333444455


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      .+..+|++++|+|+.++++..+..+.+.+.+.     ..|+++|+||+|+... .....++.+......+..++....++
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKH-ELYLGPLYGLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGG-GGGCGGGGGGSSCSCEECBTTTTBSH
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccc-hHhHHHHHhCCCCCeEEEecccCCCh
Confidence            67888999999999977887776666666552     3479999999998752 22333444322224455565555555


Q ss_pred             HHHHH
Q 027618          180 QFEVD  184 (221)
Q Consensus       180 ~~~~~  184 (221)
                      .+.++
T Consensus       150 ~~l~~  154 (161)
T 2dyk_A          150 EELLE  154 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.78  E-value=2.3e-18  Score=127.91  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=93.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .+...+|+++|++|+|||||+|++++...........+.+  ......... ....+.+|||||...+....        
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------   88 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQERYRTIT--------   88 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCSSCCSG--------
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHHHhhhH--------
Confidence            3445899999999999999999999876533222222222  222222221 23478899999987654332        


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                         ...+..+|++++|+|++++.+... ..++..+.+....  ..|+++|+||+|+....   .....++........+.
T Consensus        89 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (189)
T 2gf9_A           89 ---TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFE  163 (189)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             ---HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEE
Confidence               256678899999999985433322 4556666554212  34899999999986421   12344444432223444


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       164 ~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A          164 ASAKENINVKQVFER  178 (189)
T ss_dssp             CBTTTTBSHHHHHHH
T ss_pred             EECCCCCCHHHHHHH
Confidence            555555555554443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.77  E-value=2.4e-17  Score=122.78  Aligned_cols=127  Identities=20%  Similarity=0.253  Sum_probs=80.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|+|++...........+.|.......    .+..+.+|||||+.+......  .....+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE----ECCcEEEEECCCCCccccCHHHHHHHHHH
Confidence            34568999999999999999999998863222222333344333322    234789999999876544322  112222


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..........+|++++|+|++++.+..+..+++++.+.     ..|+++|+||+|+..
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  148 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP  148 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence            22222233456999999999988888877666666541     347999999999886

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.77  E-value=9.1e-18  Score=126.30  Aligned_cols=153  Identities=16%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|+|++........  ...+.......+.+ .+  ..+.+|||||...+....        
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------   74 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTIT--------   74 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC--------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHH--------
Confidence            345899999999999999999999876532221  22222233333444 43  378999999987654332        


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                         ...++.+|++++|+|+++..+... ..|+..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        75 ---~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  149 (206)
T 2bcg_Y           75 ---SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE  149 (206)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred             ---HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence               246678899999999985444333 4455556554322  34899999999987532   22344455433334455


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       150 ~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y          150 TSALDSTNVEDAFLT  164 (206)
T ss_dssp             CCTTTCTTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            566555555555554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.76  E-value=2.8e-18  Score=127.78  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++.........+.+.+.......... ....+.+|||||...+...           
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   90 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-AAVKAQIWDTAGLERYRAI-----------   90 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-EEEEEEEEEESCCCTTCTT-----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCCchhhhhh-----------
Confidence            3458999999999999999999998765332222222222222222211 2357889999998764322           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|+++..+... ..++..+....  ....|+++|+||+|+....   ......+........+..+
T Consensus        91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  168 (193)
T 2oil_A           91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS  168 (193)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence            2234577899999999985433222 34444444332  1234899999999986421   2334444443223344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       169 a~~~~gi~~l~~~  181 (193)
T 2oil_A          169 ALDSTNVELAFET  181 (193)
T ss_dssp             TTTCTTHHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            5555555555544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=126.83  Aligned_cols=153  Identities=18%  Similarity=0.156  Sum_probs=98.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|+|++.......  ..+.+.......+.+ .+  ..+.+|||||...+...         
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   81 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------   81 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT---------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh---------
Confidence            44589999999999999999999987653332  223333444444444 44  46889999997643322         


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                        ....++.+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        82 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  157 (196)
T 3tkl_A           82 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE  157 (196)
T ss_dssp             --HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred             --HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEE
Confidence              2245577899999999985433222 4566666554332  34899999999987532   13344454433334555


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++.....+.+.++.
T Consensus       158 ~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A          158 TSAKNATNVEQSFMT  172 (196)
T ss_dssp             ECTTTCTTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            666666666665554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=5.5e-18  Score=141.69  Aligned_cols=157  Identities=18%  Similarity=0.247  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|.+|+|||||+|+|++....... ...+.|.........| .+..+.+|||||+....  .+.....+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            57999999999999999999998743222 3456677777777778 88899999999987532  11223445555666


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH-HHHhcccCCchhhhhHHHHHh
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL-EDYLGRECPKPLKKGATKLRD  178 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~  178 (221)
                      ++..+|++++|+|+.++++..+..+.+++++.     ..|+++|+||+|......... .++.+......+..|+....+
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~g  152 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN  152 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence            77889999999999888998887777777653     247999999999754101122 344332222344456655555


Q ss_pred             HHHHHHh
Q 027618          179 QQFEVDS  185 (221)
Q Consensus       179 ~~~~~~~  185 (221)
                      +.++++.
T Consensus       153 v~~L~~~  159 (439)
T 1mky_A          153 LDTMLET  159 (439)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.76  E-value=1.1e-17  Score=122.59  Aligned_cols=157  Identities=18%  Similarity=0.129  Sum_probs=97.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ++.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.+.....+.  ..+.. .
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~--~~~~~-~   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVER--IGIER-A   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHH--HHHHH-H
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHH--HHHHH-H
Confidence            4589999999999999999999987642221 1233444444455555 6778999999998764321111  01111 2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR  177 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  177 (221)
                      ...+..+|++++|+|++++.+.....++..+.+....  ..|+++|+||+|+.....    ++........+..|+....
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~SA~~g~  151 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGETL----GMSEVNGHALIRLSARTGE  151 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCCC----EEEEETTEEEEECCTTTCT
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcchh----hhhhccCCceEEEeCCCCC
Confidence            2345678999999999877766666777777664322  348999999999754211    1111111233445665555


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      ++.+.++.
T Consensus       152 gv~~l~~~  159 (172)
T 2gj8_A          152 GVDVLRNH  159 (172)
T ss_dssp             THHHHHHH
T ss_pred             CHHHHHHH
Confidence            55555543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.76  E-value=4.4e-17  Score=121.08  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|+|++....... ...+.|.......    .+..+.+|||||+........  .....+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHH
Confidence            345689999999999999999999998732222 2233333333222    345788999999865433222  123333


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..........++++++|+|+.+..+..+...++++...     ..|+++|+||+|+..
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  147 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK  147 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            33333444677999999999878888777777777654     348999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.76  E-value=7.7e-18  Score=125.26  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.........+  .+.......+.+ .+  ..+.+|||||...+.....       
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------   88 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT--IGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITR-------   88 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCH-------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--ccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHH-------
Confidence            44579999999999999999999987653322212  222222233333 33  4788999999765433222       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                          ..+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        89 ----~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  162 (191)
T 2a5j_A           89 ----SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFME  162 (191)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             ----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEE
Confidence                35567899999999985433332 4555555554222  34899999999986421   23344454432233444


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       163 ~Sa~~~~gi~~l~~~  177 (191)
T 2a5j_A          163 TSAKTACNVEEAFIN  177 (191)
T ss_dssp             ECTTTCTTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            555555555555544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.76  E-value=3.5e-18  Score=125.28  Aligned_cols=154  Identities=14%  Similarity=0.116  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .....+|+++|++|+|||||+|++++...........+.+....  ..... ....+.+|||||...+.           
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~-----------   78 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR--IIEVSGQKIKLQIWDTAGQERFR-----------   78 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEE--EEEETTEEEEEEEEECTTGGGTC-----------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE--EEEECCeEEEEEEEECCCChHhh-----------
Confidence            34568999999999999999999998765322222222222222  22231 23478899999965432           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......++.+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....   ...+.++........+.
T Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (179)
T 1z0f_A           79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE  156 (179)
T ss_dssp             HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence            122334456799999999985533332 4555666554322  34899999999986421   23445555433333444


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++....++.+.++
T Consensus       157 ~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A          157 ASAKTGENVEDAFL  170 (179)
T ss_dssp             CCTTTCTTHHHHHH
T ss_pred             EeCCCCCCHHHHHH
Confidence            55555555554444

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.75  E-value=3.1e-17  Score=122.67  Aligned_cols=150  Identities=13%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC----------------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------------------   68 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------   68 (221)
                      ....+|+++|++|+|||||+|+|++........  ...........+.+ .+                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence            345899999999999999999999886532211  11111222222222 22                            


Q ss_pred             -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 027618           69 -----------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKI  136 (221)
Q Consensus        69 -----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~  136 (221)
                                 ..+.+|||||...+...           ....++.+|++++|+|++++.+... ..++..+.+..+   
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---  147 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---  147 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence                       67899999997654321           2245577899999999985544333 445555555422   


Q ss_pred             cccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618          137 FDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       137 ~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                       .|+++|+||+| ...   ....+.+++.......+..++.....+.+.++.
T Consensus       148 -~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  197 (208)
T 3clv_A          148 -YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM  197 (208)
T ss_dssp             -CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             -CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence             58999999999 421   124556666543344555566655555555554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.75  E-value=4.6e-18  Score=123.73  Aligned_cols=151  Identities=14%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++..........  .+.........+ .+  ..+.+|||||..++.           .
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~   70 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT--LGASFLTKKLNI-GGKRVNLAIWDTAGQERFH-----------A   70 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC--CSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------h
Confidence            4589999999999999999999977653222212  222222223333 33  368899999965432           2


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                      .....++.+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....   .....++........+..
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHT  148 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence            22346678899999999985443333 4566666655433  34899999999986421   234455554322334445


Q ss_pred             hHHHHHhHHHHHH
Q 027618          172 GATKLRDQQFEVD  184 (221)
Q Consensus       172 ~~~~~~~~~~~~~  184 (221)
                      ++....++.+.++
T Consensus       149 Sa~~~~gi~~l~~  161 (170)
T 1z08_A          149 SAKQNKGIEELFL  161 (170)
T ss_dssp             BTTTTBSHHHHHH
T ss_pred             cCCCCCCHHHHHH
Confidence            5554444444444

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.75  E-value=4.6e-18  Score=123.61  Aligned_cols=150  Identities=12%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||+|++++.......  ..+.+.........+ .+  ..+.+|||||...+....          
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~----------   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT----------   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhH----------
Confidence            479999999999999999999987653222  122222233333444 33  468899999976543322          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~  173 (221)
                       ...++.+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....  .....++.+......+..++
T Consensus        70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (170)
T 1g16_A           70 -TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA  146 (170)
T ss_dssp             -HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred             -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEEC
Confidence             234567899999999985433322 4566666654322  34899999999984311  23344444432233444555


Q ss_pred             HHHHhHHHHHH
Q 027618          174 TKLRDQQFEVD  184 (221)
Q Consensus       174 ~~~~~~~~~~~  184 (221)
                      ....++.+.++
T Consensus       147 ~~~~gv~~l~~  157 (170)
T 1g16_A          147 KNDDNVNEIFF  157 (170)
T ss_dssp             TTTBSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            54444544444

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.75  E-value=3.2e-18  Score=124.47  Aligned_cols=152  Identities=16%  Similarity=0.094  Sum_probs=90.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|++|+|||||+|++++...........+.+....  ...+. ....+.+|||||...+.           ..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~-----------~~   71 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFR-----------AL   71 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhh-----------cc
Confidence            458999999999999999999998775332222222222222  22231 23578899999985432           11


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....++.+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....   ......+........+..+
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  149 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETS  149 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEe
Confidence            2234577899999999985544333 4566666654222  34799999999986421   2233444433223344445


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       150 a~~~~~i~~l~~  161 (170)
T 1z0j_A          150 AKNAININELFI  161 (170)
T ss_dssp             TTTTBSHHHHHH
T ss_pred             CCCCcCHHHHHH
Confidence            544444444333

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.75  E-value=1.1e-17  Score=125.56  Aligned_cols=153  Identities=10%  Similarity=0.060  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+|+++|++|+|||||+|++++...........+.  ......+... ....+.+|||||...+           ...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~   73 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTI   73 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSE--EEEEEEEEETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce--eEEEEEEEECCeEEEEEEEECCCchhh-----------cch
Confidence            3489999999999999999999988753322222222  2222223331 2347899999997532           123


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+....   .....++........+..+
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS  151 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence            4456678899999999985433322 445555554321  234899999999986532   2233444443222344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       152 a~~~~gi~~l~~~  164 (203)
T 1zbd_A          152 AKDNINVKQTFER  164 (203)
T ss_dssp             TTTTBSSHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            5444444444443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.75  E-value=6.1e-18  Score=124.37  Aligned_cols=154  Identities=19%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .....+|+++|++|+|||||+|++++.........+.+.+..  .....+. ....+.+|||||...+.           
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   75 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYH-----------   75 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGG-----------
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhh-----------
Confidence            345589999999999999999999987654332222222222  2223331 23478999999965422           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......++.+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....   ...+.++........+.
T Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (181)
T 2efe_B           76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFME  153 (181)
T ss_dssp             GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred             hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEE
Confidence            112245577899999999985544333 5566666554222  34799999999986432   23445555432233444


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++.....+.+.++
T Consensus       154 ~Sa~~g~gi~~l~~  167 (181)
T 2efe_B          154 TSAKTATNVKEIFY  167 (181)
T ss_dssp             CCSSSCTTHHHHHH
T ss_pred             EECCCCCCHHHHHH
Confidence            45544444444443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.75  E-value=3.9e-18  Score=129.49  Aligned_cols=153  Identities=15%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|.+|+|||||+++++...+......+.+.....  ...... ....+.+|||+|...+..           .
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~--k~~~~~~~~v~l~iwDtaGqe~~~~-----------l   78 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTAGLERFRS-----------L   78 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEE--EEEECSSCEEEEEEECCSCTTTCGG-----------G
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEE--EEEEecceEEEEEEEECCCchhhhh-----------H
Confidence            45899999999999999999998766532222121212112  222221 234678999999876532           2


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ...+++.++++++|++++++-+... ..|+..+.+..+..  .|+++|+||+|+....   ....+++.++..-.++..|
T Consensus        79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S  156 (216)
T 4dkx_A           79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS  156 (216)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred             HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence            2356688899999999986555444 67777777765544  3899999999976421   2345556655444566677


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       157 Aktg~nV~e~F~~  169 (216)
T 4dkx_A          157 AKAGYNVKQLFRR  169 (216)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            7777777777765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.75  E-value=2.2e-17  Score=121.50  Aligned_cols=152  Identities=17%  Similarity=0.123  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++........ +  .+.......... .+  ..+.+|||||...+.....        
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~--------   72 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD-P--TIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ--------   72 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-C--CccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence            45899999999999999999999665422211 1  111111223333 44  4678999999877543332        


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                         ..++.+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+....   .....++........+..
T Consensus        73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (181)
T 3t5g_A           73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES  148 (181)
T ss_dssp             ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence               45678899999999985433333 3455555444332 234899999999985422   234455555433345556


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      ++.....+.+.++.
T Consensus       149 Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A          149 SAKENQTAVDVFRR  162 (181)
T ss_dssp             CTTSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHH
Confidence            66655555555554

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=125.24  Aligned_cols=157  Identities=17%  Similarity=0.108  Sum_probs=91.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +.....+|+++|.+|+|||||+|+|++........ +.............. ....+.+|||||...+.....       
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~-------   90 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-PTVENTYSKIVTLGK-DEFHLHLVDTAGQDEYSILPY-------   90 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-CCSEEEEEEEEC-----CEEEEEEEECCCCTTCCCCG-------
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-CccceEEEEEEEECC-EEEEEEEEECCCccchHHHHH-------
Confidence            34567899999999999999999999877542221 111111122122222 456789999999876543322       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                          ..+..+|++++|+|+++..+... ..++..+.+.... ...|+++|+||+|+....   ......+........+.
T Consensus        91 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  165 (201)
T 3oes_A           91 ----SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME  165 (201)
T ss_dssp             ----GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             ----HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence                46678899999999985433322 3444444333221 234899999999976421   22334444433334455


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++.....+.+.++.
T Consensus       166 ~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          166 SSARENQLTQGIFTK  180 (201)
T ss_dssp             CCTTCHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            666655566655554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.75  E-value=9.4e-18  Score=123.98  Aligned_cols=153  Identities=14%  Similarity=0.097  Sum_probs=95.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.......  ....+.........+ .+  ..+.+|||||...+           .
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence            44589999999999999999999987653222  222232333333444 44  47889999996531           1


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLE  151 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence            334566788999999999985433322 4555555554322  34899999999986321   23344444433333445


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       152 ~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A          152 TSALTGENVEEAFVQ  166 (186)
T ss_dssp             CCTTTCTTHHHHHHH
T ss_pred             ecCCCCCCHHHHHHH
Confidence            565555555555554

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=3e-17  Score=123.91  Aligned_cols=154  Identities=12%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|++++.......  ..+.+.......+.+ .+  ..+.+|||||...+....       
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~-------   86 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTIT-------   86 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCC-------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHH-------
Confidence            345689999999999999999999977653222  222233333344444 44  578999999976543221       


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhh
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLK  170 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~  170 (221)
                          ...+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+....  .....++........+.
T Consensus        87 ----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  160 (213)
T 3cph_A           87 ----TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIE  160 (213)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEE
T ss_pred             ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEE
Confidence                234577899999999985433322 4566666654332  34899999999984321  23344444332223444


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++.....+.+.++.
T Consensus       161 ~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A          161 SSAKNDDNVNEIFFT  175 (213)
T ss_dssp             CBTTTTBSSHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            555444444444443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.74  E-value=1.1e-17  Score=123.45  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.......  ..+.+.......+.+ .+  ..+.+|||||...+.           
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   71 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------   71 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhh-----------
Confidence            34589999999999999999999976542211  111222233333444 44  578899999976432           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......++.+|++++|+|++++.+... ..|+..+.+....  ..|+++|+||+|+....   .....++........+.
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  149 (183)
T 2fu5_C           72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME  149 (183)
T ss_dssp             --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEE
Confidence            222356678899999999985443332 3455555554222  34899999999986421   23445555433334555


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       150 ~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C          150 TSAKANINVENAFFT  164 (183)
T ss_dssp             CCC---CCHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            666666666665554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=8.1e-18  Score=125.30  Aligned_cols=155  Identities=15%  Similarity=0.064  Sum_probs=94.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...+..           .
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   88 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHS-----------L   88 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGG-----------G
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHh-----------h
Confidence            4568999999999999999999998764322222223232222222222 345789999999754321           1


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|+++..+... ..++..+.+....  ..|+++|+||+|+....   ...+.++........+..+
T Consensus        89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  166 (192)
T 2fg5_A           89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS  166 (192)
T ss_dssp             THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred             hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence            2235567899999999985544333 4566666554222  34899999999986311   2345555543333344455


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       167 a~~~~gi~~l~~~  179 (192)
T 2fg5_A          167 AKNAINIEELFQG  179 (192)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            5555555544443

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.74  E-value=4e-18  Score=123.86  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...+|+++|++|+|||||+|++++...........+.+...  ....+. ....+.+|||||...+.           ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~-----------~~   71 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERYH-----------SL   71 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence            35899999999999999999999766533222222222222  222221 24578899999975422           12


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....   .....++........+..+
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS  149 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence            2345577899999999985543333 4455555554222  34789999999976421   2334444443223344455


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       150 a~~g~gi~~l~~  161 (170)
T 1r2q_A          150 AKTSMNVNEIFM  161 (170)
T ss_dssp             TTTCTTHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            554444444443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=4e-18  Score=123.86  Aligned_cols=117  Identities=21%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||+|++++...........+.+  .......+ .+  ..+.+|||||...+.           ..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence            4789999999999999999999876532222222222  22223333 33  478899999965422           12


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.+|++++|+|++++.+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  122 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQ  122 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccc
Confidence            2345577899999999985443333 4555555554322  347999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.74  E-value=3.6e-17  Score=122.94  Aligned_cols=156  Identities=12%  Similarity=0.102  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|+|++.......  ....+.......+.+ .+  ..+.+|||||...+....       
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~-------   74 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLG-------   74 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSC-------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhH-------
Confidence            345689999999999999999999987653222  122223333333333 33  478999999976543222       


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhc-ccCCc
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLG-RECPK  167 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~-~~~~~  167 (221)
                          ...+..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+....  ...+..+.. .....
T Consensus        75 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (207)
T 1vg8_A           75 ----VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP  150 (207)
T ss_dssp             ----CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred             ----HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence                245678899999999985433322 4555555554321  1234899999999987421  234455544 22334


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      .+..++....++.+.++.
T Consensus       151 ~~~~Sa~~g~gi~~l~~~  168 (207)
T 1vg8_A          151 YFETSAKEAINVEQAFQT  168 (207)
T ss_dssp             EEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHH
Confidence            555666655556555554

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.74  E-value=1.7e-17  Score=123.21  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=93.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEeeC-----------CceEEEEeCCCCCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-----------GQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~liDtPG~~~~~~   84 (221)
                      ....+|+++|++|+|||||+|++++.........+.+  .... ...... .           ...+.++||||...+  
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~--   83 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG--IDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF--   83 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--EEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG--
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc--eeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH--
Confidence            4458999999999999999999998665322111111  1111 222323 2           247899999997531  


Q ss_pred             CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHH
Q 027618           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDY  160 (221)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~  160 (221)
                               .......++.+|++++|+|+++..+... ..++..+...... ...|+++|+||+|+....   ...+.++
T Consensus        84 ---------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~  153 (195)
T 3bc1_A           84 ---------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEEEAREL  153 (195)
T ss_dssp             ---------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             ---------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHH
Confidence                     1334456788899999999985444333 4555555554321 234899999999986421   2334444


Q ss_pred             hcccCCchhhhhHHHHHhHHHHHHh
Q 027618          161 LGRECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       161 l~~~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ........+..++.....+.+.++.
T Consensus       154 ~~~~~~~~~~~Sa~~~~~v~~l~~~  178 (195)
T 3bc1_A          154 AEKYGIPYFETSAANGTNISHAIEM  178 (195)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             HHHcCCCEEEEECCCCCCHHHHHHH
Confidence            4432234444555555555555544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.74  E-value=3.5e-18  Score=127.35  Aligned_cols=157  Identities=13%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG   90 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~   90 (221)
                      +.+.....+|+++|.+|+|||||+|+|++........  ...+.......+.+ .+  ..+.+|||||...+    .   
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~----~---   89 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF----N---   89 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG----H---
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH----H---
Confidence            3444556899999999999999999999876532221  22223333334444 44  46889999996532    1   


Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-C
Q 027618           91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-C  165 (221)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~  165 (221)
                          ......+..+|++++|+|+++..+... ..|++.+......  ..|+++|+||+|+....   ....+++.... .
T Consensus        90 ----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~  163 (192)
T 2il1_A           90 ----SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREITRQQGEKFAQQITG  163 (192)
T ss_dssp             ----HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTT
T ss_pred             ----HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHhcCC
Confidence                112233445699999999986544433 4555556554222  34899999999986421   22344554431 2


Q ss_pred             CchhhhhHHHHHhHHHHHHh
Q 027618          166 PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ...+..++....++.+.++.
T Consensus       164 ~~~~~~SA~~g~gi~~l~~~  183 (192)
T 2il1_A          164 MRFCEASAKDNFNVDEIFLK  183 (192)
T ss_dssp             CEEEECBTTTTBSHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHH
Confidence            33445555555555554443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.74  E-value=6.6e-17  Score=120.65  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .+.....+|+++|.+|+|||||+|++++.........   .|.......+.. .+..+.+|||||...+.          
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~----------   77 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEK-GRVAFTVFDMGGAKKFR----------   77 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEEE-TTEEEEEEEECCSGGGG----------
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEEe-CCEEEEEEECCCCHhHH----------
Confidence            4456678999999999999999999999876442111   122233444555 78899999999986532          


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc------ccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK------IFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~------~~~~~ivv~tk~D~~~  151 (221)
                       ......+..+|++++|+|+++..+... ..++..+.+.....      ...|+++|+||+|+..
T Consensus        78 -~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  141 (199)
T 4bas_A           78 -GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG  141 (199)
T ss_dssp             -GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred             -HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence             222356788999999999986544333 24444443321110      1458999999999876

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.73  E-value=1.6e-17  Score=121.91  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      .+.....+|+++|++|+|||||+|++++.......   .+.+.........+ .+  ..+.+|||||...+.....    
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~----   75 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY---DPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE----   75 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH----
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc---CCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH----
Confidence            34556689999999999999999999987542221   11122222233333 43  4688999999876433221    


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK  167 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~  167 (221)
                             ..+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+....   ......+.......
T Consensus        76 -------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  147 (181)
T 2fn4_A           76 -------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA  147 (181)
T ss_dssp             -------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE
T ss_pred             -------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCe
Confidence                   22344699999999985433222 3455555333222 234899999999986421   22334444332233


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      .+..++....++.+.++.
T Consensus       148 ~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A          148 YFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEECBTTTTBSHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHH
Confidence            445555555555555544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.73  E-value=2.5e-17  Score=120.98  Aligned_cols=157  Identities=11%  Similarity=0.088  Sum_probs=89.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|++++..........  .+.......+.+.  ....+.+|||||...+.          
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------   72 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQERFQ----------   72 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCChHhh----------
Confidence            345689999999999999999999987653222111  1222222333331  23578999999965422          


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC----ChhhHHHHhc-ccC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED----NDETLEDYLG-REC  165 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~----~~~~~~~~l~-~~~  165 (221)
                       ......++.+|++++|+|+++..+... ..++..+......  ....|+++|+||+|+...    ......++.. ...
T Consensus        73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~  151 (182)
T 1ky3_A           73 -SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGD  151 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTS
T ss_pred             -hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCC
Confidence             233456788899999999985443332 4555666554331  123489999999998531    1233444444 122


Q ss_pred             CchhhhhHHHHHhHHHHHHh
Q 027618          166 PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ...+..++....++.+.++.
T Consensus       152 ~~~~~~Sa~~~~gi~~l~~~  171 (182)
T 1ky3_A          152 IPLFLTSAKNAINVDTAFEE  171 (182)
T ss_dssp             CCEEEEBTTTTBSHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHH
Confidence            33455566555555555544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.73  E-value=2.6e-17  Score=120.56  Aligned_cols=155  Identities=15%  Similarity=0.074  Sum_probs=95.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.........  ..+.........+ .+  ..+.+|||||...+           .
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------R   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------H
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------h
Confidence            3458999999999999999999997764322211  1222222333334 44  47899999996431           2


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC--ChhhHHHHhc-ccCCch
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED--NDETLEDYLG-RECPKP  168 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~--~~~~~~~~l~-~~~~~~  168 (221)
                      ......++.+|++++|+++++..+... ..++..+......  ....|+++|+||+|+...  ....+.++.. ......
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  150 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY  150 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence            334466788899999999985443332 4566666655331  123489999999998632  1334555554 223345


Q ss_pred             hhhhHHHHHhHHHHHHh
Q 027618          169 LKKGATKLRDQQFEVDS  185 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~~  185 (221)
                      +..++....++.+.++.
T Consensus       151 ~~~Sa~~~~gi~~l~~~  167 (177)
T 1wms_A          151 FETSAKDATNVAAAFEE  167 (177)
T ss_dssp             EECCTTTCTTHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHH
Confidence            55666655555555543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.73  E-value=1.2e-17  Score=121.11  Aligned_cols=149  Identities=18%  Similarity=0.066  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++.........  ..+.........+ .  ...+.+|||||...+....         
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~---------   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAIT---------   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSC--CCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCC---------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHH---------
Confidence            458999999999999999999998764322111  1122222233333 3  3478899999976543322         


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                        ...++.+|++++|++++++.+... ..++..+....   ...|+++|+||+|+....   ...+.++........+..
T Consensus        72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  146 (168)
T 1z2a_A           72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT  146 (168)
T ss_dssp             --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred             --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence              234567899999999985433222 44555555543   234899999999976421   233444444322233444


Q ss_pred             hHHHHHhHHHHH
Q 027618          172 GATKLRDQQFEV  183 (221)
Q Consensus       172 ~~~~~~~~~~~~  183 (221)
                      ++....++.+.+
T Consensus       147 Sa~~~~~i~~l~  158 (168)
T 1z2a_A          147 SVKEDLNVSEVF  158 (168)
T ss_dssp             BTTTTBSSHHHH
T ss_pred             ecCCCCCHHHHH
Confidence            444444444333

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.73  E-value=4.2e-17  Score=118.20  Aligned_cols=152  Identities=18%  Similarity=-0.011  Sum_probs=80.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|++++....... ...+.+. ........ ....+.++||||...+.           ....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~-----------~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDG-EEASLMVYDIWEQDGGR-----------WLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETT-EEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECC-EEEEEEEEECCCCccch-----------hhhh
Confidence            478999999999999999999987653222 1222222 21122211 23467899999976532           1222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      .++..+|++++|++++++.+... ..++..+.+... ....|+++|+||+|+....   ......+........+..++.
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA  146 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence            45577899999999985443332 344444544321 1234899999999987432   223334444333345556666


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       147 ~~~gi~~l~~~  157 (166)
T 3q72_A          147 LHHNVQALFEG  157 (166)
T ss_dssp             GTBSHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            66666665554

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.73  E-value=5.1e-17  Score=121.63  Aligned_cols=120  Identities=20%  Similarity=0.109  Sum_probs=75.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      .......+|+++|++|+|||||++++++.... ....  +++.........+ .+.  .+.+|||||...+....     
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-----   85 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TEYI--PTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLR-----   85 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSG-----
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CCCC--CcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHh-----
Confidence            34556789999999999999999999987642 2111  1122222223333 443  57799999987654332     


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                            ...+..+|++++|+|++++.+....  .|+..+.....   ..|+++|+||+|+..
T Consensus        86 ------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           86 ------PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE  138 (201)
T ss_dssp             ------GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred             ------HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence                  2466788999999999865444442  46666665432   348999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.73  E-value=2.1e-17  Score=124.19  Aligned_cols=156  Identities=18%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC--cccccccCCCCcceeeEEEEEEeeC---CceEEEEeCCCCCCCCCCchHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGK   91 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~   91 (221)
                      ....+|+++|++|+|||||+|++++.  ......  ............+.+..   ...+.+|||||...          
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------   85 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDY--AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------   85 (208)
T ss_dssp             EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCC--CCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------
Confidence            34579999999999999999999987  332111  11111122333344412   34789999999642          


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC-CC---hhhHHHHhcccC
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE-DN---DETLEDYLGREC  165 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~-~~---~~~~~~~l~~~~  165 (221)
                       ........+..+|++++|+|++++.+... ..++..+....+. ....|+++|+||+|+.. ..   ...+.++.....
T Consensus        86 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           86 -YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT  164 (208)
T ss_dssp             -HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC
Confidence             22345567788999999999985544333 4566666654330 02348999999999865 21   234555665433


Q ss_pred             CchhhhhHHH-HHhHHHHHHh
Q 027618          166 PKPLKKGATK-LRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~-~~~~~~~~~~  185 (221)
                      ...+..++.. ..++.+.++.
T Consensus       165 ~~~~~~Sa~~~~~gi~~l~~~  185 (208)
T 2yc2_C          165 LDFFDVSANPPGKDADAPFLS  185 (208)
T ss_dssp             CEEEECCC-------CHHHHH
T ss_pred             CEEEEeccCCCCcCHHHHHHH
Confidence            3455566666 5555555543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.73  E-value=1.7e-17  Score=122.27  Aligned_cols=156  Identities=20%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG   90 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~   90 (221)
                      +++..+..+|+++|++|+|||||+|++++........ +  .+.......... .+.  .+.+|||||...+.....   
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~---   84 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD-P--TIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE---   84 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH---
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-C--CccceeEEEEEe-CCcEEEEEEEECCCchhhHHHHH---
Confidence            3344567899999999999999999999765432211 1  111122233333 444  355699999765432221   


Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCC
Q 027618           91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECP  166 (221)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~  166 (221)
                              .+++.+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+....   .....++......
T Consensus        85 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~  155 (183)
T 3kkq_A           85 --------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI  155 (183)
T ss_dssp             --------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC
T ss_pred             --------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC
Confidence                    23345699999999985433322 4555555544332 234899999999976421   2334444443333


Q ss_pred             chhhhhHH-HHHhHHHHHH
Q 027618          167 KPLKKGAT-KLRDQQFEVD  184 (221)
Q Consensus       167 ~~l~~~~~-~~~~~~~~~~  184 (221)
                      .++..++. ...++.+.++
T Consensus       156 ~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A          156 PYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             CEEEEBCSSSCBSHHHHHH
T ss_pred             eEEEeccCCCCCCHHHHHH
Confidence            34445554 4444444444

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=8.2e-18  Score=125.12  Aligned_cols=155  Identities=11%  Similarity=0.019  Sum_probs=94.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +...+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...           +...
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~   88 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTI   88 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHH
Confidence            3458999999999999999999998664322212222223222222222 456799999999432           2233


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++.+... ..+++.+......  ..|+++|+||+|+....   ......+........+..+
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEAS  166 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEE
Confidence            4456678899999999985433222 4566666554322  34899999999975421   2233344433223445556


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       167 a~~~~gi~~l~~~  179 (191)
T 3dz8_A          167 AKENISVRQAFER  179 (191)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            6555555555554

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=6.9e-17  Score=118.58  Aligned_cols=153  Identities=17%  Similarity=0.123  Sum_probs=89.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++........ ....+.......... .+  ..+.+|||||...+.           
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence            345899999999999999999999876532221 112222222222333 43  378899999965422           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+....   .....++........+.
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFME  152 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEE
Confidence            223355677899999999985443332 456666665433  234899999999987532   22334444322223444


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++....++.+.++
T Consensus       153 ~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A          153 TSAKTGLNVDLAFT  166 (180)
T ss_dssp             CCTTTCTTHHHHHH
T ss_pred             EeCCCCCCHHHHHH
Confidence            45544444444444

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.72  E-value=9.8e-17  Score=117.15  Aligned_cols=154  Identities=19%  Similarity=0.098  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++....... .+.+.+...  ..+.+ .+  ..+.+|||||.....         ...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence            4589999999999999999999988754332 222333222  22333 43  367899999976421         011


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~  171 (221)
                      .....+..+|++++|++++++.+... ..++..+.+... ....|+++|+||+|+.....   .....+........+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  148 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIET  148 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEEC
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEE
Confidence            22345677899999999985443333 344454544311 12348999999999875321   22233333222234445


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      ++....++.+.++.
T Consensus       149 Sa~~g~gi~~l~~~  162 (175)
T 2nzj_A          149 SATLQHNVAELFEG  162 (175)
T ss_dssp             BTTTTBSHHHHHHH
T ss_pred             ecCCCCCHHHHHHH
Confidence            55555555555543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.72  E-value=6.9e-17  Score=119.45  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=90.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|+|++.......   .+.+.......... .+.  .+.+|||||...+.....        
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------   70 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD--------   70 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH--------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH--------
Confidence            4589999999999999999999977642221   12222222233333 444  467899999776433221        


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~  172 (221)
                         ..+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+....  .....++........+..+
T Consensus        71 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S  146 (189)
T 4dsu_A           71 ---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS  146 (189)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence               23344699999999985433333 4555555554322 235899999999986422  2344455443333445556


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       147 a~~g~gi~~l~~~  159 (189)
T 4dsu_A          147 AKTRQGVDDAFYT  159 (189)
T ss_dssp             TTTCTTHHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            6555555555554

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.72  E-value=7.4e-18  Score=126.23  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|++++...........+.+...  ....+ .+  ..+.+|||||...+.          
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~----------   91 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIV-DGERTVLQLWDTAGQERFR----------   91 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEE-TTEEEEEEEEECTTCTTCH----------
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEE-CCEEEEEEEEECCCCcchh----------
Confidence            3456899999999999999999999876432221122222222  22223 33  468899999976421          


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                       ......++.+|++++|+|+++..+... ..|++.+......  ..|+++|+||+|+.
T Consensus        92 -~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~  146 (199)
T 2p5s_A           92 -SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR  146 (199)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             -hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence             112233445699999999985544333 4556666554222  34899999999975

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=1.8e-17  Score=123.27  Aligned_cols=154  Identities=15%  Similarity=0.130  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|++|+|||||+|+|++...........+  .......+.+. ....+.+|||||...+...           
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   80 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------   80 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--eEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence            458999999999999999999998765322222222  22222233331 2357889999997654322           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ....++.+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+....  .....++........+..++
T Consensus        81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (195)
T 1x3s_A           81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA  159 (195)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecC
Confidence            2245577899999999985433222 344444433221 1235899999999985321  23445555433333444555


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      .....+.+.++.
T Consensus       160 ~~~~gi~~l~~~  171 (195)
T 1x3s_A          160 KTCDGVQCAFEE  171 (195)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            555555554443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.72  E-value=2.4e-17  Score=123.55  Aligned_cols=153  Identities=15%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++........  ...+.......+.+ .+  ..+.+|||||...+..          
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~----------   89 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRS----------   89 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSC----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHH----------
Confidence            445899999999999999999999876533221  11222222233333 44  5789999999543221          


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                       .....+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        90 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  166 (200)
T 2o52_A           90 -VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE  166 (200)
T ss_dssp             -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             -HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence             12245677899999999985443332 4555555554322  34899999999985321   22344444433333445


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       167 ~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          167 TSALTGENVEEAFLK  181 (200)
T ss_dssp             ECTTTCTTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            566655556555554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.72  E-value=1.3e-16  Score=125.50  Aligned_cols=127  Identities=20%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchH-
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF-   88 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~-   88 (221)
                      ...+|+++|.+|+|||||+|+|++...+.....      ..+.+.........+ .+  ..+.+|||||+.++....+. 
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhH
Confidence            358999999999999999999999876554321      111222222223322 33  38999999999765333221 


Q ss_pred             --HHHHH----HHHHHh---------hcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           89 --VGKEI----VKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        89 --~~~~~----~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        +...+    ..++..         ....+|+++++++.. ..+...+..+++.+..      ..|+++|+||+|...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  158 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence              22111    222221         113478999999765 4688888777776654      348999999999886

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.72  E-value=1.7e-16  Score=115.41  Aligned_cols=116  Identities=15%  Similarity=0.076  Sum_probs=79.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|++|+|||||+|++++......     ..|.........+ .+..+.+|||||...+.           ...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~   68 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYW   68 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HHH
Confidence            458999999999999999999987664221     1233344455566 68899999999976432           223


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...++.+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus        69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence            356788999999999986655433 233333322111 12458999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=2.5e-17  Score=123.79  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.......  ....+.......+.+ .+  ..+.+|||||...           +.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~   89 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR   89 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence            34589999999999999999999987653221  122222333334444 44  3688999999643           12


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......++.+|++++|+|++++.+... ..|+..+......  ..|+++|+||+|+....   .....++........+.
T Consensus        90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  167 (201)
T 2ew1_A           90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE  167 (201)
T ss_dssp             HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEE
Confidence            334567788999999999985443322 4566666554322  34799999999986421   22344444332234455


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       168 ~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          168 TSAKESDNVEKLFLD  182 (201)
T ss_dssp             CCTTTCTTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            566555555555554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.72  E-value=2.8e-17  Score=121.94  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=91.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+..+|+++|++|+|||||+|++++.........  ..+.......+.+ .+  ..+.+|||||...           +
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~   82 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA--TIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------F   82 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCC--CCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------H
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence            44568999999999999999999997765332221  2222223333333 33  4789999999542           1


Q ss_pred             H-HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618           94 V-KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP  168 (221)
Q Consensus        94 ~-~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~  168 (221)
                      . ......+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+....   ......+........
T Consensus        83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  161 (189)
T 1z06_A           83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPL  161 (189)
T ss_dssp             HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred             hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEE
Confidence            1 222345577899999999985433322 456666665532 2234899999999986421   223444444322234


Q ss_pred             hhhhHHHH---HhHHHHHHh
Q 027618          169 LKKGATKL---RDQQFEVDS  185 (221)
Q Consensus       169 l~~~~~~~---~~~~~~~~~  185 (221)
                      +..++...   ..+.+.++.
T Consensus       162 ~~~Sa~~~~~~~~i~~l~~~  181 (189)
T 1z06_A          162 FETSAKNPNDNDHVEAIFMT  181 (189)
T ss_dssp             EECCSSSGGGGSCHHHHHHH
T ss_pred             EEEeCCcCCcccCHHHHHHH
Confidence            44444444   444444443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.72  E-value=5.5e-18  Score=142.32  Aligned_cols=125  Identities=23%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ...++|+++|.+|||||||+|+|++...... ....+.|.........+ .+..+.+|||||+...   .+...+++...
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~   95 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQ   95 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHH
Confidence            3457999999999999999999999765422 23456777777777777 7889999999998742   22235566666


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+++.+|++++|+|..+.++..+..+.+.+++     ...|+++|+||+|...
T Consensus        96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred             HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence            6667777899999999988899988887777754     2348999999999765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.71  E-value=2.2e-16  Score=117.44  Aligned_cols=158  Identities=10%  Similarity=0.051  Sum_probs=97.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEE---Ee-eCCceEEEEeCCCCCCCCCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VL-KDGQVVNVIDTPGLFDFSAGS   86 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~---~~-~~~~~~~liDtPG~~~~~~~~   86 (221)
                      ....+|+++|++|+|||||++.+.+.........      ....|........   .. .....+.+|||||...+.   
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---   88 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---   88 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence            3458999999999999999998887543221110      0111222221111   11 023468899999976543   


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCCC-ChhhHHHHh
Q 027618           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED-NDETLEDYL  161 (221)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~~-~~~~~~~~l  161 (221)
                              ......++.+|++++|+|+++.....+...++.+.+++.    .....|+++|+||+|+... ....+.+++
T Consensus        89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  160 (198)
T 3t1o_A           89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV  160 (198)
T ss_dssp             --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence                    223346788899999999985544444444444444322    1234589999999998653 235567777


Q ss_pred             cccCC-chhhhhHHHHHhHHHHHHh
Q 027618          162 GRECP-KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       162 ~~~~~-~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..... ..+..++....++.+.++.
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~  185 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKE  185 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHH
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHH
Confidence            65434 5666777777777776665

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.71  E-value=1.9e-15  Score=123.02  Aligned_cols=159  Identities=19%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++......  .....|.......... .+..+.++||||+.+..........  ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence            4558999999999999999999999874222  2234455555555555 6778999999999764332211111  122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhh---HHHHhcccCCchhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET---LEDYLGRECPKPLK  170 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~---~~~~l~~~~~~~l~  170 (221)
                      +......+|++++|+|+++..  +... ..++..+...++   ..|+++|+||+|...  ...   +.+++.......+.
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~  314 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD--EENIKRLEKFVKEKGLNPIK  314 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC--HHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC--hHHHHHHHHHHHhcCCCeEE
Confidence            223344679999999987543  4444 566777766543   348999999999876  333   33333322334455


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       315 iSA~~g~gi~~l~~~  329 (357)
T 2e87_A          315 ISALKGTGIDLVKEE  329 (357)
T ss_dssp             CBTTTTBTHHHHHHH
T ss_pred             EeCCCCcCHHHHHHH
Confidence            666666666666654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.71  E-value=2.4e-17  Score=125.06  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|.+|+|||||+|+|++...........+.+....  ......+  ..+.+|||||...+.....       
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------   79 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAVLKD-------   79 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence            3458999999999999999999997764322222222222111  1111122  5689999999876443322       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                          ..+..+|++++|+|++++.+..+ ..|+..+.......  .|+++|+||+|+....   ......+........+.
T Consensus        80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (218)
T 4djt_A           80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE  153 (218)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred             ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence                34567899999999986554443 46666666654433  4899999999987531   22344554433334455


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++....++.+.++
T Consensus       154 ~Sa~~g~gv~~l~~  167 (218)
T 4djt_A          154 ISAKTAHNFGLPFL  167 (218)
T ss_dssp             EBTTTTBTTTHHHH
T ss_pred             EecCCCCCHHHHHH
Confidence            55554444444443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.71  E-value=5.9e-17  Score=118.76  Aligned_cols=154  Identities=14%  Similarity=0.045  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ....+|+++|++|+|||||+|++++.........+.  +.......+.+ .+   ..+.+|||||...+...        
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~--------   72 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI--GLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM--------   72 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTT--TSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT--------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCce--eEEEEEEEEEe-CCCCEEEEEEEECCCCccccch--------
Confidence            456899999999999999999999876532211111  12233334444 33   57899999998754322        


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP  168 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~  168 (221)
                         ....+..+|++++|+|++++.+... ..++..+....... ..+++++|+||+|+....   .....++........
T Consensus        73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 2hxs_A           73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSS  149 (178)
T ss_dssp             ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred             ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcE
Confidence               1234577899999999985444332 45566665543211 223489999999986421   233444444322334


Q ss_pred             hhhhHHHHHhHHHHHH
Q 027618          169 LKKGATKLRDQQFEVD  184 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~  184 (221)
                      +..++....++.+.++
T Consensus       150 ~~~Sa~~~~gi~~l~~  165 (178)
T 2hxs_A          150 HFVSAKTGDSVFLCFQ  165 (178)
T ss_dssp             EEECTTTCTTHHHHHH
T ss_pred             EEEeCCCCCCHHHHHH
Confidence            4455554444444444

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.71  E-value=6e-17  Score=127.31  Aligned_cols=122  Identities=20%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~   96 (221)
                      ..+|+++|.+|+|||||+|+|+|......  ...+.|.......+.+ .+..+.+|||||+.++....  ....+.+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            47999999999999999999999874322  2345666676677766 67889999999998865321  1122222222


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      . .....+|++++|+|+++ . .....+..++.+.     ..|+++|+||+|...
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE  126 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence            2 23478899999999984 2 2334455555543     348999999999764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.71  E-value=6.7e-17  Score=120.75  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .+.....+|+++|.+|||||||++.+++........ ....+...............+.+|||||...+......     
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----   88 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----   88 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----
Confidence            345567899999999999999999998864322111 11112112111121114468999999998765433200     


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         ....++.+|++++|+|+++++......+..++.+........|+++|+||+|+..
T Consensus        89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~  143 (196)
T 3llu_A           89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS  143 (196)
T ss_dssp             ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence               0134456799999999997643444555566665422223458999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=3.1e-17  Score=119.35  Aligned_cols=119  Identities=22%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|++|+|||||+|++++...........+.+..   ...... ....+.+|||||..++.           ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~   68 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFP-----------AMQ   68 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCH-----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence            489999999999999999999987653222111121111   112220 22468899999976532           111


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..+|++++|++++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            223344699999999985433332 456666666543223458999999999764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=118.75  Aligned_cols=154  Identities=15%  Similarity=0.033  Sum_probs=93.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|.+|+|||||+|++++...+....   ..|.......+.+ .+..+.+|||||...+..           
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------   82 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN-----------   82 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------
Confidence            3456899999999999999999999887322221   2233344555566 678999999999765422           


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCC-hhhHHHHhcc-c----CCc
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDN-DETLEDYLGR-E----CPK  167 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~-~----~~~  167 (221)
                      .....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...+.+++.. .    ...
T Consensus        83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 2h57_A           83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH  162 (190)
T ss_dssp             GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE
Confidence            12345677899999999985433222 2344444332111 0235899999999987531 2345555531 1    112


Q ss_pred             hhhhhHHHHHhHHHHHH
Q 027618          168 PLKKGATKLRDQQFEVD  184 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~  184 (221)
                      .+..++....++.+.++
T Consensus       163 ~~~~Sa~~~~gi~~l~~  179 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVD  179 (190)
T ss_dssp             EEECBTTTTBTHHHHHH
T ss_pred             EEEccCCCCcCHHHHHH
Confidence            34455555555554444

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.71  E-value=1.4e-17  Score=121.98  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|++|+|||||+|++++.......  ....+.........+ .+  ..+.+|||||...+...          
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----------   79 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL----------   79 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHH----------
Confidence            3489999999999999999999976653222  222233333334444 44  47889999996543211          


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ....+..+|++++|+|++++.+... ..++..+....+.  ..|+++|+||+|+..
T Consensus        80 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~  133 (179)
T 2y8e_A           80 -IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSD  133 (179)
T ss_dssp             -SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGG
T ss_pred             -HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccc
Confidence             1233456799999999985433222 4555555554332  348999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.71  E-value=8.2e-17  Score=116.42  Aligned_cols=150  Identities=15%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||+|++++........ +  .+.......... .+  ..+.++||||...+.           ..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~   67 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD-P--TIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCC-C--CcceeEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence            4799999999999999999999776432211 1  111222233333 33  348899999976421           11


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+++.+..+... ..++..+.+.... ...|+++|+||+|+....   .....++........+..+
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  146 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS  146 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence            1223345599999999985443332 4455555554332 235899999999976421   1223333332222334445


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       147 a~~~~gi~~l~~  158 (167)
T 1kao_A          147 AKSKTMVDELFA  158 (167)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCCcCHHHHHH
Confidence            444444444443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.70  E-value=5.4e-17  Score=117.52  Aligned_cols=151  Identities=17%  Similarity=0.110  Sum_probs=86.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|++|+|||||+|++++........   +.+.........+ .+  ..+.+|||||..++.           .
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~   67 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-----------H
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCC---CCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-----------H
Confidence            45899999999999999999999876432211   1111222222333 33  368899999965421           1


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                      .....+..+|++++|+++++..+... ..++..+.+.... ...|+++|+||+|+....   .....++........+..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  146 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET  146 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence            12233445699999999985443332 4555666555332 234899999999986421   223444443322234444


Q ss_pred             hHHHHHhHHHHHH
Q 027618          172 GATKLRDQQFEVD  184 (221)
Q Consensus       172 ~~~~~~~~~~~~~  184 (221)
                      ++....++.+.++
T Consensus       147 Sa~~~~gi~~l~~  159 (168)
T 1u8z_A          147 SAKTRANVDKVFF  159 (168)
T ss_dssp             CTTTCTTHHHHHH
T ss_pred             CCCCCCCHHHHHH
Confidence            5544444444443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.70  E-value=9.6e-17  Score=120.39  Aligned_cols=154  Identities=17%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+..+|+++|++|+|||||+|++++........   +.+.......+.+ .+  ..+.+|||||...+.          
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------   76 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------   76 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence            3456899999999999999999999876422211   1122222233333 44  378899999976531          


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL  169 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l  169 (221)
                       ......+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+....   ...+.++........+
T Consensus        77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
T 2bov_A           77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV  154 (206)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred             -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence             112223345699999999985433322 4555556554321 234899999999986421   2344555543333455


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       155 ~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A          155 ETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EECTTTCTTHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHH
Confidence            5565555555555554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.70  E-value=5.3e-17  Score=121.86  Aligned_cols=153  Identities=12%  Similarity=0.064  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|++++.......  ....+.......+.+ .+  ..+.+|||||...+           .
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~   92 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R   92 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence            34579999999999999999999877642211  111112222333444 44  47899999996532           1


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCC-chh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECP-KPL  169 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~-~~l  169 (221)
                      ......++.+|++++|+|++++.+... ..++..+.+....  ..|+++|+||+|+....   ...+.++...... ..+
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  170 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI  170 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence            233455678899999999985433322 4566666554322  34899999999986421   2345555553222 455


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       171 ~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          171 ETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             ECBTTTTBSHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHH
Confidence            5666665566655554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.70  E-value=1.1e-17  Score=139.74  Aligned_cols=155  Identities=21%  Similarity=0.163  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.+|||||+....   ......+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999998765322 23456676777677777 77889999999987422   1244556666666


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      ++..+|++++|+|+.++.+..+..+.+.+++     ...|+++|+||+|..... ....++.+......+..|+....++
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~~~~~~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhHHHHHHcCCCCeEEEeCcCCCCh
Confidence            6777899999999998899888766665543     234899999999987521 1112222222223444555555555


Q ss_pred             HHHHHh
Q 027618          180 QFEVDS  185 (221)
Q Consensus       180 ~~~~~~  185 (221)
                      .++++.
T Consensus       153 ~~L~~~  158 (436)
T 2hjg_A          153 GDLLDA  158 (436)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.70  E-value=1.2e-16  Score=121.17  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=78.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .....+|+++|.+|+|||||++++++.........+.+   .......... ....+.+|||||...+...         
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------   91 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF---ENYTACLETEEQRVELSLWDTSGSPYYDNV---------   91 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEC--CEEEEEEEEECCSGGGTTT---------
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeee---eeEEEEEEECCEEEEEEEEECCCCHhHHHH---------
Confidence            34568999999999999999999998765322111111   1111122221 3357889999997654322         


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ....+..+|++++|+|++++.+...  ..|+..+.....   ..|+++|+||+|+..
T Consensus        92 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           92 --RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT  145 (214)
T ss_dssp             --GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred             --HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence              2356788999999999986555444  466677766532   348999999999864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.70  E-value=8e-17  Score=135.32  Aligned_cols=125  Identities=17%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++...   +.........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence            468999999999999999999998643222 2334566666666666 8889999999999763221   1111123334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ..+..+|++++|+|+++..+.... ....++... .   ..|+++|+||+|+...
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc
Confidence            567889999999999977776322 222222222 2   3489999999998863

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.70  E-value=7.7e-17  Score=122.85  Aligned_cols=152  Identities=15%  Similarity=0.099  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|+|++.........  ..+.......+.+ .+  ..+.+|||||...+....        
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------   79 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS--TIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAIT--------   79 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC--------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEEE-CCEEEEEEEEECCCccchhhhH--------
Confidence            4458999999999999999999998765322211  1222222233334 44  478999999987654322        


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                         ...++.+|++++|+|++++.+... ..|+..+......  ..|+++|+||+|+....   .....++.......++.
T Consensus        80 ---~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  154 (223)
T 3cpj_B           80 ---SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTE  154 (223)
T ss_dssp             ---GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             ---HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence               246678899999999985544333 4555666554222  34899999999986421   23445555433333444


Q ss_pred             hhHHHHHhHHHHHH
Q 027618          171 KGATKLRDQQFEVD  184 (221)
Q Consensus       171 ~~~~~~~~~~~~~~  184 (221)
                      .++.....+.+.++
T Consensus       155 ~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B          155 TSALNSENVDKAFE  168 (223)
T ss_dssp             CCCC-CCCHHHHHH
T ss_pred             EeCCCCCCHHHHHH
Confidence            44444444444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.70  E-value=1.3e-16  Score=117.70  Aligned_cols=153  Identities=16%  Similarity=0.101  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .+..+|+++|++|+|||||+|+|++........   +.+.........+ .+  ..+.+|||||..++.           
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   80 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------   80 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC---CccceEEEEEEEE-CCEEEEEEEEECCCCcccH-----------
Confidence            456899999999999999999999876432211   1122222223333 44  368899999976531           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                      ......+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+....   ...+.++........+.
T Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  159 (187)
T 2a9k_A           81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE  159 (187)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence            112223345699999999985433222 4555666555332 234899999999976421   23444555433334444


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++.....+.+.++.
T Consensus       160 ~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A          160 TSAKTRANVDKVFFD  174 (187)
T ss_dssp             CCTTTCTTHHHHHHH
T ss_pred             eCCCCCCCHHHHHHH
Confidence            555555555554443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.70  E-value=3.6e-16  Score=116.28  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||++++++......     ..|.......+.+ .+..+.++||||...+...           
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL-----------   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH-----------
Confidence            4457999999999999999999998764221     1233333455556 6789999999998654322           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (221)
                      ....++.+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+... ....+.+++.
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  150 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALG  150 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence            2245678899999999986554443 33444433221 1123589999999998752 1334555544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.70  E-value=6.2e-17  Score=117.62  Aligned_cols=152  Identities=20%  Similarity=0.111  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|+|||||+|++++.........  ..+.........+ .+  ..+.+|||||..++...       +.   
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~---   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ---   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh---
Confidence            6899999999999999999997654322211  2223333333333 33  46779999998753211       11   


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+....   .....++........+..++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA  148 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence            122334699999999985433222 3455555443221 235899999999976321   23344444433334455666


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       149 ~~~~~v~~l~~~  160 (169)
T 3q85_A          149 ALHHNTRELFEG  160 (169)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             ccCCCHHHHHHH
Confidence            655555555554

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.70  E-value=1.6e-16  Score=116.48  Aligned_cols=148  Identities=17%  Similarity=0.064  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .+..+|+++|++|+|||||+|++++......  .+....  .....+.. .+  ..+.+|||||...     .       
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~t~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~-------   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESE--QYKKEMLV-DGQTHLVLIREEAGAPD-----A-------   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC--SSCSSS--EEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCc--CCCcce--eEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence            3458999999999999999999998765331  111111  11222333 33  4578899999753     1       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC--C---ChhhHHHHhccc-CC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE--D---NDETLEDYLGRE-CP  166 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~--~---~~~~~~~~l~~~-~~  166 (221)
                          ..++.+|++++|+|++++.+... ..|++++.+.... ....|+++|+||+|+..  .   ......++.... ..
T Consensus        68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~  143 (178)
T 2iwr_A           68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC  143 (178)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE
T ss_pred             ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC
Confidence                23344699999999986554444 4455556554331 12348999999999731  1   123344454431 23


Q ss_pred             chhhhhHHHHHhHHHHHHh
Q 027618          167 KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..+..++....++.+.++.
T Consensus       144 ~~~~~Sa~~~~~i~~lf~~  162 (178)
T 2iwr_A          144 SYYETXATYGLNVDRVFQE  162 (178)
T ss_dssp             EEEEEBTTTTBTHHHHHHH
T ss_pred             eEEEEeccccCCHHHHHHH
Confidence            4455666666666665554

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.69  E-value=5e-16  Score=120.99  Aligned_cols=120  Identities=22%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|+|+|.......  ..+.|.......+.+ .+..+.+|||||..++.....  .+.+...+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence            478999999999999999999998754332  335666666666666 778999999999987654321  122222221


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      . ...+|++++|+|+++ +. ....+...+.+.     ..|+++|+||+|...
T Consensus        80 ~-~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~~-----~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           80 L-KGDADLVILVADSVN-PE-QSLYLLLEILEM-----EKKVILAMTAIDEAK  124 (258)
T ss_dssp             H-HSCCSEEEEEEETTS-CH-HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred             h-hcCCCEEEEEeCCCc-hh-hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence            1 157899999999984 32 223344444332     348999999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=8.6e-17  Score=120.02  Aligned_cols=154  Identities=19%  Similarity=0.107  Sum_probs=89.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|+|++...........+.+.   ...... .  ...+.+|||||...+.           
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   70 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQFP-----------   70 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSCH-----------
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHhH-----------
Confidence            3458999999999999999999998665322211111111   111222 2  2368899999976531           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~  171 (221)
                      ......++.+|++++|+++++..+... ..++..+.+..+.....|+++|+||+|+....  .....++........+..
T Consensus        71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  150 (199)
T 2gf0_A           71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMET  150 (199)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEE
Confidence            111223345699999999985433332 44666666654332345899999999986421  223344443322334445


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      ++....++.+.++.
T Consensus       151 Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A          151 SAKMNYNVKELFQE  164 (199)
T ss_dssp             BTTTTBSHHHHHHH
T ss_pred             ecCCCCCHHHHHHH
Confidence            55544444444443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.69  E-value=1.2e-16  Score=119.08  Aligned_cols=152  Identities=13%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|.+|+|||||+|++++.........+   +.......... .+.  .+.+|||||...+...        
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------   87 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPT---VFENFSHVMKY-KNEEFILHLWDTAGQEEYDRL--------   87 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC---SEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTT--------
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCe---eeeeeEEEEEE-CCEEEEEEEEECCCcHHHHHH--------
Confidence            344589999999999999999999987642221111   11111122223 443  4689999997654322        


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCC-----ChhhHHHHhccc-C
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED-----NDETLEDYLGRE-C  165 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-----~~~~~~~~l~~~-~  165 (221)
                         ....+..+|++++|+|++++.+...  ..|+..+.....   ..|+++|+||+|+..+     ......++.... .
T Consensus        88 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (194)
T 3reg_A           88 ---RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC  161 (194)
T ss_dssp             ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred             ---hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence               2356788899999999986544444  455666655422   2489999999998642     123344444432 2


Q ss_pred             CchhhhhHHHHHhHHHHHHh
Q 027618          166 PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ...+..++....++.+.++.
T Consensus       162 ~~~~~~Sa~~~~gi~~l~~~  181 (194)
T 3reg_A          162 VAYIEASSVAKIGLNEVFEK  181 (194)
T ss_dssp             SCEEECBTTTTBSHHHHHHH
T ss_pred             CEEEEeecCCCCCHHHHHHH
Confidence            22555666655555555544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.69  E-value=4.6e-18  Score=127.35  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=89.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||+|+|++........  .+.+.......+.+ .+  ..+.+|||||...+.....       
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------  100 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITS-------  100 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSC-------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHH-------
Confidence            446899999999999999999999876532221  12223333344444 44  4688999999776543322       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                          ..++.+|++++|+|+++..+... ..++..+.....  ...|+++|+||+|+....   ......+........+.
T Consensus       101 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  174 (199)
T 3l0i_B          101 ----SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE  174 (199)
T ss_dssp             ----C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCC
T ss_pred             ----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEE
Confidence                45678899999999986544333 344444443222  234899999999986421   12334444433334555


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++.....+.+.++.
T Consensus       175 vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          175 TSAKNATNVEQSFMT  189 (199)
T ss_dssp             CCC---HHHHHHHHH
T ss_pred             EECCCCCCHHHHHHH
Confidence            666666666666554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.69  E-value=2e-16  Score=114.32  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|+|||||+|++++......     .+|.......+.+ .+..+.+|||||...+           ......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence            3799999999999999999987664321     1122233344555 6788999999997531           123344


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .++.+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~  115 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN  115 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcC
Confidence            6688899999999986543332 23333332211 112348999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.69  E-value=1e-16  Score=134.61  Aligned_cols=130  Identities=20%  Similarity=0.194  Sum_probs=86.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|.+|+|||||+|++++....... ...++|.......+.+ .+..+.+|||||+.+.....+........
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHH
Confidence            345689999999999999999999987643332 2334455554455556 77899999999986432111000000001


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ....++..+|++++|+|+.+.++..+..++..+.+. +    .|+++|+||+|+...
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK  321 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCC
Confidence            111234556999999999988999988888887762 2    479999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.69  E-value=2.5e-16  Score=116.09  Aligned_cols=151  Identities=13%  Similarity=0.055  Sum_probs=91.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|.+|+|||||+|++++....... ...+    .....+.+ .+..+.+|||||...+...          
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------   81 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG----SNVEEIVI-NNTRFLMWDIGGQESLRSS----------   81 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSS----SSCEEEEE-TTEEEEEEEESSSGGGTCG----------
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCc----eeeEEEEE-CCEEEEEEECCCCHhHHHH----------
Confidence            445689999999999999999999988762221 1222    12234445 7789999999998653322          


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCch
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKP  168 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~  168 (221)
                       ....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+++...     ....
T Consensus        82 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  159 (181)
T 2h17_A           82 -WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI  159 (181)
T ss_dssp             -GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred             -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE
Confidence             2356688899999999986655443 333433332211 1234899999999987521 23444444210     0123


Q ss_pred             hhhhHHHHHhHHHHHH
Q 027618          169 LKKGATKLRDQQFEVD  184 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~  184 (221)
                      +..++....++.+.++
T Consensus       160 ~~~Sa~~g~gi~~l~~  175 (181)
T 2h17_A          160 QACCALTGEGLCQGLE  175 (181)
T ss_dssp             EECBTTTTBTHHHHHH
T ss_pred             EEccCCCCcCHHHHHH
Confidence            4455555555555444

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=3.8e-16  Score=114.98  Aligned_cols=151  Identities=15%  Similarity=0.052  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++........     |.........+ .+..+.+|||||...+....          
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~----------   79 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPYW----------   79 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CCTTG----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEEEE-CCEEEEEEECCCCHhHHHHH----------
Confidence            456999999999999999999999776522211     11122334445 67889999999987644322          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPL  169 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l  169 (221)
                       ...+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.... ...+.+++....     ...+
T Consensus        80 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  157 (183)
T 1moz_A           80 -RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV  157 (183)
T ss_dssp             -GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred             -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence             245678899999999986655443 23333332211 02345899999999987521 234555543210     1234


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       158 ~~Sa~~~~gi~~l~~~  173 (183)
T 1moz_A          158 ASSAIKGEGITEGLDW  173 (183)
T ss_dssp             EEBGGGTBTHHHHHHH
T ss_pred             EccCCCCcCHHHHHHH
Confidence            4666666666655554

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.69  E-value=3.8e-16  Score=115.38  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++.. . ...   .+|.........+ .+..+.+|||||...           ....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-V-DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            456999999999999999999999876 2 211   1233344445556 788999999999743           2223


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG  133 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence            3456788999999999986544433 233333332211 12358999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.69  E-value=5.4e-16  Score=114.92  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=79.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++.......+     |.........+ .+..+.+|||||...+.....         
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~---------   84 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPYWR---------   84 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCCCS---------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHHHH---------
Confidence            356999999999999999999998776532211     22233344555 678999999999876543322         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..++.+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus        85 --~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~  137 (189)
T 2x77_A           85 --CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPD  137 (189)
T ss_dssp             --SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTT
T ss_pred             --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcC
Confidence              45678899999999986655443 23333332211 112348999999999876

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.69  E-value=9.6e-17  Score=121.62  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-----------CceEEEEeCCCCCCCCCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------GQVVNVIDTPGLFDFSAGS   86 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtPG~~~~~~~~   86 (221)
                      ...+|+++|++|+|||||+|+|++........  ...........+.+..           ...+.+|||||..      
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------   95 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------   95 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCC--CceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence            35799999999999999999999876522111  1111111222233311           3578999999942      


Q ss_pred             hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC---hhhHHHHh
Q 027618           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN---DETLEDYL  161 (221)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~---~~~~~~~l  161 (221)
                           .+.......+..+|++++|+|+++..+...  ...++.......  ...|+++|+||+|+....   .....++.
T Consensus        96 -----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~  168 (217)
T 2f7s_A           96 -----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA  168 (217)
T ss_dssp             -----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             -----hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH
Confidence                 233344456678899999999985433222  122333322111  245899999999986421   23445555


Q ss_pred             cccCCchhhhhHHHHHhHHHHHHh
Q 027618          162 GRECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                      .......+..++.....+.+.++.
T Consensus       169 ~~~~~~~~~~Sa~~g~gi~~l~~~  192 (217)
T 2f7s_A          169 DKYGIPYFETSAATGQNVEKAVET  192 (217)
T ss_dssp             HHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred             HHCCCcEEEEECCCCCCHHHHHHH
Confidence            433334555666655556555554

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=117.37  Aligned_cols=154  Identities=21%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|.+|+|||||+|++++.........+   +.......... .+  ..+.+|||||...+...        
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------   85 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPN---LEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------   85 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCC---ccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence            345689999999999999999999987642211111   11111122222 33  46789999998754321        


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP  168 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~  168 (221)
                          ...+..+|++++|+|++++.+... ..|+..+...... ....|+++|+||+|+....   .....++..+.....
T Consensus        86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  161 (187)
T 3c5c_A           86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLF  161 (187)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred             ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcE
Confidence                124466799999999985444333 4455656554321 1234899999999985321   233445544322344


Q ss_pred             hhhhH-HHHHhHHHHHHh
Q 027618          169 LKKGA-TKLRDQQFEVDS  185 (221)
Q Consensus       169 l~~~~-~~~~~~~~~~~~  185 (221)
                      +..++ ....++.+.++.
T Consensus       162 ~e~Sa~~~g~gv~~lf~~  179 (187)
T 3c5c_A          162 FEVSACLDFEHVQHVFHE  179 (187)
T ss_dssp             EECCSSSCSHHHHHHHHH
T ss_pred             EEEeecCccccHHHHHHH
Confidence            45555 444555554443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.69  E-value=4.9e-16  Score=112.11  Aligned_cols=150  Identities=18%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|+|||||+|++++........   +.+.......... .+  ..+.+|||||..++..           .
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----------~   67 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA-----------M   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH-----------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccC---CccceEEEEEEEE-CCEEEEEEEEECCCchhhhH-----------H
Confidence            3689999999999999999999776432211   1111222222333 33  3578999999765321           1


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ....+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+....  .....++.+......+..++
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (166)
T 2ce2_X           68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA  146 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred             HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence            1123344699999999985433232 4555556554332 134899999999976521  23344444432233444454


Q ss_pred             HHHHhHHHHHH
Q 027618          174 TKLRDQQFEVD  184 (221)
Q Consensus       174 ~~~~~~~~~~~  184 (221)
                      ....++.+.++
T Consensus       147 ~~~~gi~~l~~  157 (166)
T 2ce2_X          147 KTRQGVEDAFY  157 (166)
T ss_dssp             TTCTTHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            44444444333

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.68  E-value=2.5e-16  Score=117.33  Aligned_cols=117  Identities=12%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++.......     +|.......+.+ .+..+.+|||||...+...           
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNICFTVWDVGGQDKIRPL-----------   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----CTT-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccC-----CcCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            45689999999999999999999887653221     132333444555 7789999999998654322           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~  144 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPN  144 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCC
Confidence            1234456799999999986544333 233333322111 12358999999999865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=118.18  Aligned_cols=159  Identities=20%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG   90 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~   90 (221)
                      +.+.....+|+++|.+|||||||+|++++..........  .+.......+.+ .+  ..+.+|||||...+    ..  
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~----~~--   87 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIMV-DKEEVTLVVYDIWEQGDA----GG--   87 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEEE-TTEEEEEEEECCCCCSGG----GH--
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEEE-CCEEEEEEEEecCCCccc----hh--
Confidence            334556689999999999999999999875532222111  122222223333 44  35778999997642    11  


Q ss_pred             HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCC
Q 027618           91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECP  166 (221)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~  166 (221)
                       .+..   .++..+|++++|+|++++.+... ..|+..+...... ...|+++|+||+|+.....   ....++......
T Consensus        88 -~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~  162 (195)
T 3cbq_A           88 -WLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC  162 (195)
T ss_dssp             -HHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred             -hhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHHHHHHHhCC
Confidence             1111   23345699999999985443332 4555555543221 2348999999999864221   233444433223


Q ss_pred             chhhhhHHHHHhHHHHHHh
Q 027618          167 KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~  185 (221)
                      .++..++.....+.+.++.
T Consensus       163 ~~~e~Sa~~~~~v~~lf~~  181 (195)
T 3cbq_A          163 KHIETSAALHHNTRELFEG  181 (195)
T ss_dssp             EEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEEcCCCCCCHHHHHHH
Confidence            4455666655556555554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.68  E-value=1e-16  Score=133.83  Aligned_cols=129  Identities=19%  Similarity=0.162  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.+.....+.+.......
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence            34589999999999999999999998753222 2334555555556666 778899999999865432111000000001


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ...++..+|++++|+|++++.+.++..++..+.+.     ..|+++|+||+|+...
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDK  301 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCc
Confidence            11234556999999999988998888777766542     2479999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.68  E-value=1.4e-16  Score=115.40  Aligned_cols=151  Identities=15%  Similarity=0.096  Sum_probs=87.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|++|+|||||+|++++........ +  .+........... ....+.+|||||...+...           .
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~   68 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD-P--TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM-----------R   68 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCC-C--CSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH-----------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-C--CccceEEEEEEECCEEEEEEEEECCChHHHHHH-----------H
Confidence            4789999999999999999999865422211 1  1111111222221 2346889999998754321           1


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-CCchhhhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-CPKPLKKG  172 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~~~~l~~~  172 (221)
                      ...+..+|++++|++++++.+... ..+++.+.+.... ...|+++|+||+|+....   .....++.... ....+..+
T Consensus        69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (167)
T 1c1y_A           69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS  147 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEec
Confidence            123344699999999985433222 4555566554332 234899999999986421   23344444432 23344455


Q ss_pred             HHHHHhHHHHHH
Q 027618          173 ATKLRDQQFEVD  184 (221)
Q Consensus       173 ~~~~~~~~~~~~  184 (221)
                      +....++.+.++
T Consensus       148 a~~~~gi~~l~~  159 (167)
T 1c1y_A          148 AKSKINVNEIFY  159 (167)
T ss_dssp             TTTTBSHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            555545544444

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.68  E-value=5.9e-16  Score=120.43  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~   97 (221)
                      ++|+++|.+|+|||||+|+|+|.......  ..+.|.......+.+ .+..+.+|||||+.++.....  ...+.+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            58999999999999999999998753332  345666666677777 788999999999987653210  1222233222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      . ....+|++++|+|+++ . .....+..++.+.     ..|+++|+||+|...
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAE  124 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            1 1267899999999984 1 2223333333322     348999999999764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.68  E-value=4.2e-16  Score=113.21  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|+|++.......  ..+.|.......+.+ .+..+.+|||||...+....  ..+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence            378999999999999999999987643222  223344444444555 67889999999998754332  1122222211


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh--hhHHHHhcccCCchhhhhHHHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND--ETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~--~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                      . ...+|++++|+|+.+ . .....++..+.+.     ..|+++|+||+|+.....  ...+++........+..|+...
T Consensus        78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (165)
T 2wji_A           78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-----GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKK  149 (165)
T ss_dssp             H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-----TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred             h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-----CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCC
Confidence            1 135799999999984 2 1223344444431     348999999999753101  1233333322233455666665


Q ss_pred             HhHHHHHHh
Q 027618          177 RDQQFEVDS  185 (221)
Q Consensus       177 ~~~~~~~~~  185 (221)
                      .++.+.++.
T Consensus       150 ~~v~~l~~~  158 (165)
T 2wji_A          150 MGIEELKKA  158 (165)
T ss_dssp             BSHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            566555543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.68  E-value=9.1e-16  Score=113.72  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .+..+|+++|.+|+|||||+|+|++.......   .+.+.........+ .+  ..+.+|||||...+.           
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   83 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------   83 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHHHH-----------
Confidence            34579999999999999999999977543221   11122222233333 44  358899999965422           


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC--ChhhHHHHhcccCCchhhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED--NDETLEDYLGRECPKPLKK  171 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~--~~~~~~~~l~~~~~~~l~~  171 (221)
                      ......+..+|++++|+++++..+..+ ..++..+...... ...|+++|+||+|+...  ....+.++........+..
T Consensus        84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 3con_A           84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIET  162 (190)
T ss_dssp             ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEE
Confidence            223356678899999999985544333 4555555554331 13489999999997642  1234455554322344445


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      ++....++.+.++.
T Consensus       163 Sa~~~~gi~~l~~~  176 (190)
T 3con_A          163 SAKTRQGVEDAFYT  176 (190)
T ss_dssp             CTTTCTTHHHHHHH
T ss_pred             eCCCCCCHHHHHHH
Confidence            55554555544443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.68  E-value=5.7e-16  Score=114.58  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|++|+|||||+|+|++.......  ..+.|.......+.+ .+..+.+|||||...+.....  .+.+....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence            4589999999999999999999987654332  234455555566666 788999999999987643221  12222221


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGATK  175 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~~  175 (221)
                      ... ..++++++|+|..+ + .....++..+.+     ...|+++|+||+|.....  ....+++........+..++..
T Consensus        81 ~~~-~~~~~~i~v~d~~~-~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (188)
T 2wjg_A           81 IIN-EKPDLVVNIVDATA-L-ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAK  152 (188)
T ss_dssp             HHH-HCCSEEEEEEEGGG-H-HHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred             Hhc-cCCCEEEEEecchh-H-HHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecC
Confidence            111 24689999999873 2 122334433332     134799999999975311  1233444332223344455555


Q ss_pred             HHhHHHHHHh
Q 027618          176 LRDQQFEVDS  185 (221)
Q Consensus       176 ~~~~~~~~~~  185 (221)
                      ..++.+.++.
T Consensus       153 ~~~v~~l~~~  162 (188)
T 2wjg_A          153 KMGIEELKKA  162 (188)
T ss_dssp             TBSHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            5455554443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.67  E-value=3.7e-17  Score=124.33  Aligned_cols=122  Identities=20%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ......+|+++|.+|+|||||+|+++............+.+.......... ....+.+|||||...+.....       
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~-------   82 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD-------   82 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence            345568999999999999999999654433222222333344443333322 345788999999765443322       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                          ..+..+|++++|+|++++.+... ..|+..+.+...   ..|+++|+||+|+..
T Consensus        83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred             ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence                34567899999999985444333 456666665432   348999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.67  E-value=2.6e-16  Score=116.24  Aligned_cols=118  Identities=15%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ....+|+++|++|+|||||+|++++....... .+..  .........+. ....+.+|||||...+...          
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   71 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VPTV--FENYTASFEIDTQRIELSLWDTSGSPYYDNV----------   71 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCS--EEEEEEEEECSSCEEEEEEEEECCSGGGTTT----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCcc--ceeEEEEEEECCEEEEEEEEECCCChhhhhh----------
Confidence            45689999999999999999999987643221 1111  11111122221 2346889999997653322          


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ....+..+|++++|+|++++.+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        72 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           72 -RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  125 (184)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             -HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence             2246788899999999985544333  345566655432   348999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.67  E-value=2.3e-16  Score=116.79  Aligned_cols=149  Identities=19%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      +..+..+|+++|++|+|||||+|++++....... .+   |.......+.+ .+  ..+.+|||||...+.         
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ---------   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC---CcceEEEEEEE-CCEEEEEEEEECCCChhhh---------
Confidence            3455689999999999999999999887653221 11   22222233444 44  356779999976421         


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-----ChhhHHHHhcccC-
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-----NDETLEDYLGREC-  165 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-----~~~~~~~~l~~~~-  165 (221)
                             .+..+|++++|+|++++.+... ..|+..+..... ....|+++|+||+|+...     ......++..... 
T Consensus        82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~  153 (184)
T 3ihw_A           82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR  153 (184)
T ss_dssp             -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred             -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence                   2334699999999986554444 456655554321 124589999999997421     1234455555422 


Q ss_pred             CchhhhhHHHHHhHHHHHHh
Q 027618          166 PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..++..++....++.+.++.
T Consensus       154 ~~~~e~Sa~~~~gv~~lf~~  173 (184)
T 3ihw_A          154 CTYYETCATYGLNVERVFQD  173 (184)
T ss_dssp             CEEEEEBTTTTBTHHHHHHH
T ss_pred             CeEEEecCCCCCCHHHHHHH
Confidence            34555666666666665554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.67  E-value=3.7e-16  Score=117.65  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=76.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|++++....... .+   |.... ...+.+. ....+.+|||||...+...        
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------   92 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP---TVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------   92 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC---CSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT--------
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC---ccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH--------
Confidence            345689999999999999999999987653221 11   11111 1222221 2347889999997653322        


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         ....+..+|++++|+|++++.+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        93 ---~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           93 ---RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             ---HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence               2246688899999999985444333  355566655432   348999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=5.8e-16  Score=115.22  Aligned_cols=116  Identities=17%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||++++++........   +.+.........+ .+  ..+.+|||||...+....         
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---------   83 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR---------   83 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC---CSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTTTG---------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CcccceeEEEEEE-CCEEEEEEEEECCCCcchhHHH---------
Confidence            45799999999999999999999875422211   1111111223333 33  468899999987654322         


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ...+..+|++++|+|++++.+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        84 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  136 (194)
T 2atx_A           84 --PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD  136 (194)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred             --HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence              256788899999999985543333  256666666432   348999999999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.67  E-value=4.1e-16  Score=124.12  Aligned_cols=122  Identities=19%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~   97 (221)
                      ...|+++|++|+|||||+|+|+|....... ...+.|.......+.+ .+..+.++||||+. .+   ...+.+.+...+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~   82 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence            468999999999999999999998764322 1223444444444555 77889999999986 21   111222333334


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++..+|++++|+|+.+ ++..+...++.+..     ...|+++++||+|...
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            566788899999999986 88887766555542     1348999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.2e-15  Score=112.92  Aligned_cols=151  Identities=13%  Similarity=0.033  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++....... .    |.......+.+ .+..+.+|||||...+...           
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLRSS-----------   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----CGG-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            34589999999999999999999977654221 1    11122334445 6789999999998654321           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCchh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKPL  169 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~l  169 (221)
                      ....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+++...     ....+
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  155 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ  155 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence            1234577899999999986655443 344444433211 1235899999999987521 23444444321     11234


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       156 ~~Sa~~g~gi~~l~~~  171 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEW  171 (187)
T ss_dssp             ECBTTTTBTHHHHHHH
T ss_pred             EccCCCCcCHHHHHHH
Confidence            4555555555554443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.66  E-value=2.7e-16  Score=115.96  Aligned_cols=116  Identities=19%  Similarity=0.081  Sum_probs=76.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||++++++.........+   +.......... .+  ..+.+|||||...+...          
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------   69 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL----------   69 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC---SCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTT----------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc---ccceeEEEEEE-CCEEEEEEEEECCCCHhHHHH----------
Confidence            3589999999999999999999976543221111   11111222233 33  35679999998654322          


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ....+..+|++++|+|++++.+....  .++..+.+..+   ..|+++|+||+|+..
T Consensus        70 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  123 (186)
T 1mh1_A           70 -RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  123 (186)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred             -HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence             22466788999999999865444442  46666665433   348999999999865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.66  E-value=4.6e-16  Score=116.97  Aligned_cols=118  Identities=19%  Similarity=0.093  Sum_probs=77.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+..+|+++|.+|+|||||++++++.......   .+.+.........+ .+.  .+.+|||||...+...        
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------   94 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL--------   94 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTT--------
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchhhHHH--------
Confidence            455699999999999999999999976543221   11222222223333 343  4559999998654322        


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         ....+..+|++++|+|++++.+....  .++..+....   ...|+++|+||+|+..
T Consensus        95 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  148 (204)
T 4gzl_A           95 ---RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD  148 (204)
T ss_dssp             ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred             ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence               23567889999999999865544442  4666666543   2348999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.66  E-value=1.6e-15  Score=118.95  Aligned_cols=120  Identities=21%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|++|+|||||+|+|+|......  ...+.|.........+ .+..+.+|||||+.++......  ..+.... 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~-   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF-   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence            47999999999999999999999876322  2345666666666777 7888999999999976543321  1122211 


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .....+|++++|+|+++ . .....++..+.+. +   ..|+++|+||+|+.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLL  122 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred             hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence            22367899999999984 2 2223333333332 1   14899999999954

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.66  E-value=5.9e-16  Score=130.17  Aligned_cols=120  Identities=22%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCchHH-HHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~   96 (221)
                      +.+|+++|.+|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+. ++....+.. ...... 
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ-  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH-
Confidence            378999999999999999999987643222 2345566666666666 78899999999997 543322211 111222 


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         .+..+|++++|+|+++..+..+..+++.+    .   ..|+++|+||+|+..
T Consensus       320 ---~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~  364 (482)
T 1xzp_A          320 ---EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE  364 (482)
T ss_dssp             ---HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             ---HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence               33455999999999877777665554433    2   248999999999865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.66  E-value=8.3e-16  Score=115.04  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|||||||+|++++.......     .|.......+.+ .+..+.+|||||...+...           
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRV-----------   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCG-----------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhHHH-----------
Confidence            44589999999999999999999987643211     122222344555 6789999999997654321           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  162 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (221)
                      ....++.+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+... ..+.+.+++.
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence            2245677899999999986544333 33444333221 1124589999999998642 1345555554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.66  E-value=7.1e-16  Score=115.58  Aligned_cols=117  Identities=18%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|.+|+|||||+|++++...........+..  .. ....+ .+  ..+.+|||||...+...         
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~---------   89 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YI-ADIEV-DGKQVELALWDTAGQEDYDRL---------   89 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC--CE-EEEEE-TTEEEEEEEECCCCSGGGTTT---------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce--EE-EEEEE-CCEEEEEEEEECCCchhHHHH---------
Confidence            445899999999999999999999876532221111111  11 12333 33  37889999997653322         


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ....+..+|++++|+|+++..+...  ..++..+.+...   ..|+++|+||+|+..
T Consensus        90 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  143 (201)
T 2gco_A           90 --RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ  143 (201)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred             --HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence              2246778899999999985433333  356666655422   348999999999876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.66  E-value=1.9e-15  Score=112.00  Aligned_cols=118  Identities=17%  Similarity=0.072  Sum_probs=77.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+..+|+++|++|+|||||+|++++.......    ..|.......+.+ .+..+.+|||||...           +...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~   83 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSM   83 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHH
Confidence            44689999999999999999999977653211    1233333344555 788999999999643           1122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus        84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~  138 (188)
T 1zd9_A           84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPG  138 (188)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred             HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCcc
Confidence            3345578899999999985543333 233333322111 12358999999999875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.66  E-value=3.6e-16  Score=118.04  Aligned_cols=117  Identities=19%  Similarity=0.108  Sum_probs=77.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||++++++.........+.+   ......+.. .+  ..+.+|||||...+...         
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   73 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNFSANVAV-DGQIVNLGLWDTAGQEDYSRL---------   73 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSC---CCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc---eeEEEEEEE-CCEEEEEEEEECCCcHHHHHH---------
Confidence            3458999999999999999999997664222111111   111222333 33  47889999998765432         


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ....+..+|++++|+|++++.+...  ..|+..+....+   ..|+++|+||+|+..
T Consensus        74 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  127 (212)
T 2j0v_A           74 --RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD  127 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             --HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence              2246788899999999985444333  256666665432   348999999999765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.66  E-value=9e-16  Score=122.52  Aligned_cols=126  Identities=20%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|++++....... ...+.|.........+..+..+.+|||||...+      ..........
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~   75 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD   75 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence            479999999999999999999887432221 123455555555555435678999999996532      0111122334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++.+|++++|+|+++..+..+ ..+.+++.+........|+++|+||+|+..
T Consensus        76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            55678899999999996665555 344555555432222358999999999875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.66  E-value=7.2e-16  Score=116.74  Aligned_cols=116  Identities=21%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++........ +  .+.......... .+.  .+.+|||||...+.           .
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYT-P--TVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------R   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------C-C--CCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-C--ccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------H
Confidence            45899999999999999999999876532211 1  111121222333 333  68899999976432           2


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+..+|++++|+|++++.+...  ..|+..+.....   ..|+++|+||+|+..
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  152 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK  152 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence            22345678899999999985444333  245666655422   348999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=8.1e-16  Score=114.71  Aligned_cols=153  Identities=18%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      .....+|+++|++|+|||||+|++++........ +...+  .......+ .+  ..+.+|||||...     .      
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~------   89 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLES--TYRHQATI-DDEVVSMEILDTAGQED-----T------   89 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCE--EEEEEEEE-TTEEEEEEEEECCCCCC-----C------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCc--eEEEEEEE-CCEEEEEEEEECCCCCc-----c------
Confidence            3556899999999999999999999876532211 11111  11222333 33  4688999999875     1      


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL  169 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l  169 (221)
                       ......+..+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+....   .....++........+
T Consensus        90 -~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~  167 (196)
T 2atv_A           90 -IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY  167 (196)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred             -cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence             111223344599999999985433322 4556666554322 234899999999986421   1233344432222344


Q ss_pred             hhhHHHHH-hHHHHHHh
Q 027618          170 KKGATKLR-DQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~-~~~~~~~~  185 (221)
                      ..++.... ++.+.++.
T Consensus       168 ~~Sa~~g~~gi~~l~~~  184 (196)
T 2atv_A          168 ECSACTGEGNITEIFYE  184 (196)
T ss_dssp             ECCTTTCTTCHHHHHHH
T ss_pred             EECCCcCCcCHHHHHHH
Confidence            45555444 45554443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=6.6e-16  Score=116.27  Aligned_cols=116  Identities=19%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|++|+|||||+|++++..........   +.......... .+  ..+.+|||||...+....         
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------   90 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT---VFENYVADIEV-DGKQVELALWDTAGQEDYDRLR---------   90 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTTTG---------
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc---ccceEEEEEEE-CCEEEEEEEEECCCcHHHHHHH---------
Confidence            3479999999999999999999987653221111   11111122333 33  468899999987654222         


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ...+..+|++++|+|+++..+...  ..++..+.+...   ..|+++|+||+|+..
T Consensus        91 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  143 (207)
T 2fv8_A           91 --PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS  143 (207)
T ss_dssp             --GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred             --HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence              246678899999999985433222  456666665422   348999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.65  E-value=2.9e-15  Score=110.42  Aligned_cols=151  Identities=15%  Similarity=0.055  Sum_probs=91.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||++++++.......     .|.......+.+ .+..+.+|||||...+           ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            45689999999999999999999987542211     122223334555 6788999999997531           122


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCchh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKPL  169 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~l  169 (221)
                      ....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+.+...     ....+
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ  155 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEE
Confidence            3345678899999999986544333 233333322111 1234899999999987532 12333333210     11233


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..++....++.+.++.
T Consensus       156 ~~Sa~~g~gi~~l~~~  171 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNW  171 (181)
T ss_dssp             ECCTTTCTTHHHHHHH
T ss_pred             EccCCCCCCHHHHHHH
Confidence            4566555555555554

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.65  E-value=2.6e-16  Score=115.65  Aligned_cols=118  Identities=18%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ....+|+++|++|+|||||++++++...........+...   ...... .....+.+|||||...+....         
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------   73 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF---SANVVVNGATVNLGLWDTAGQEDYNRLR---------   73 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C---BCCCC-------CEEECCCC-CTTTTTG---------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE---EEEEEECCEEEEEEEEECCCChhhhhhH---------
Confidence            3458999999999999999999997664222111111010   011111 023456699999987644222         


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ...+..+|++++|+|++++.+...  ..|+..+.....   ..|+++|+||+|+..
T Consensus        74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  126 (182)
T 3bwd_D           74 --PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD  126 (182)
T ss_dssp             --GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             --HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence              246678899999999985444333  246666665432   348999999999765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.64  E-value=3.3e-15  Score=112.85  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ....+|+++|++|+|||||++++++.......   .+.+  .....+.+..  +..+.+|||||...           +.
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~   68 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR   68 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC---CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccc---CCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence            34589999999999999999999987643222   1112  2222344412  56799999999752           11


Q ss_pred             H-HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCC
Q 027618           95 K-CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~  151 (221)
                      . .....++.+|++++|+|+++ +........+.+.+.+.    .....|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence            2 23334677899999999984 32223333333333221    122358999999999875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.64  E-value=1.7e-16  Score=131.35  Aligned_cols=127  Identities=20%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ....++|+++|++|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.++........+.   
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~---  106 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK---  106 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence            455689999999999999999999998753222 3345566666666666233489999999998765432221222   


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                       ....+..+|++++|+|+  .....+..++..+.+.     ..|+++|+||+|+.....
T Consensus       107 -~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A          107 -ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             -HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCC
T ss_pred             -HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccH
Confidence             23345678999999998  5667778888888775     347999999999886433

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.64  E-value=2.9e-16  Score=131.47  Aligned_cols=121  Identities=23%  Similarity=0.245  Sum_probs=77.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++....+   ........
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~  298 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSR  298 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHh
Confidence            468999999999999999999987643222 2234455554445556 788999999999875322111   11122234


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|++++.+..+..+++.+..       .|+++|+||+|+..
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~  344 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVE  344 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred             hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence            56688999999999998888877666655532       38999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=121.26  Aligned_cols=150  Identities=14%  Similarity=0.016  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...+|+++|.+|+|||||+|+|++.......     .|.......+.+ .+..+.+|||||...+...           .
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence            3468999999999999999999987753221     244455555666 7889999999996654332           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchhh
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPLK  170 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l~  170 (221)
                      ...+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+.... ...+...+....     ...+.
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  305 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA  305 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEE
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEE
Confidence            245577899999999986555443 222222222111 1234899999999987532 223333332111     11334


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       306 vSAk~g~gi~el~~~  320 (329)
T 3o47_A          306 TCATSGDGLYEGLDW  320 (329)
T ss_dssp             CBTTTTBTHHHHHHH
T ss_pred             EECCCCcCHHHHHHH
Confidence            555555555555554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-15  Score=113.32  Aligned_cols=121  Identities=10%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|+|||||+|+|++........... .+..     ..+ ....+.+|||||...+.....       ..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~-~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~-------~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSA-----ADY-DGSGVTLVDFPGHVKLRYKLS-------DY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC-Ccee-----eee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence            456899999999999999999999876432111111 1111     112 456788999999876543221       22


Q ss_pred             HHhhcCCCcEEEEEEeCC-CCCCHHH-HHHHHHHHHHhc--ccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (221)
                      +......+|++++|+|++ +.-+... ..++..+.....  .....|+++|+||+|+..
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            333334569999999988 2222111 233333322211  112358999999999876

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.63  E-value=4.2e-15  Score=121.18  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC--------------------------------------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--------------------------------------------   53 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~--------------------------------------------   53 (221)
                      .-+.|+++|++|||||||+|+|+|....+.+.....                                            
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            446999999999999999999999876433321110                                            


Q ss_pred             --------cceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH
Q 027618           54 --------VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA  123 (221)
Q Consensus        54 --------~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~  123 (221)
                              .........+..+....+.+|||||+..+..  ........+...+..++..+|++++|++.. ........
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence                    0000001111222345789999999987532  123345566666667778899999998764 22222234


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618          124 ALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ++..++....  ...|+++|+||+|+...
T Consensus       192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          192 AIKISREVDP--SGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred             HHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence            4555554422  13379999999998863

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.63  E-value=4.5e-16  Score=125.62  Aligned_cols=125  Identities=18%  Similarity=0.135  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+|+|.++||||||+|+|++......  .....|..+....+.+.....+.++||||+.+.......+...+.+.+.. 
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~-  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence            589999999999999999998754222  22344555555666663347899999999754222222233444444333 


Q ss_pred             cCCCcEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRS---RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         ++++++|+|+++   +-...+ ..+...+..........|+++|+||+|+..
T Consensus       237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence               499999999985   222223 445555555422123458999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.62  E-value=2e-15  Score=120.79  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CC---ccee---------------------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SG---VTST---------------------------------   57 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~---~t~~---------------------------------   57 (221)
                      ...++|+++|.+|+|||||+|+|+|....+.+...   .+   .+..                                 
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            34579999999999999999999998763222110   00   0000                                 


Q ss_pred             ------------------eEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEEEEEeC-CCC
Q 027618           58 ------------------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSR  116 (221)
Q Consensus        58 ------------------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~  116 (221)
                                        .....+..+.+..+.+|||||+.....  ........+...+..++..+|++++|++. +..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                              000011222446899999999975221  11122334555555666778999999986 434


Q ss_pred             CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          117 FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       117 ~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +...+ ..+++.+..     ...|+++|+||+|+..
T Consensus       182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~  212 (315)
T 1jwy_B          182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMD  212 (315)
T ss_dssp             STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSC
T ss_pred             hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCC
Confidence            44333 244444332     2348999999999886

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.62  E-value=1.8e-15  Score=111.96  Aligned_cols=134  Identities=17%  Similarity=0.173  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC---   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~---   96 (221)
                      .+|+++|++|+|||||+|++++.......  ..+.|.....  ..+ .  .+.++||||+.....-.......+...   
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCC--CCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            57999999999999999999988743221  2233333322  223 2  788999999865443332222233322   


Q ss_pred             -HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHH--------HHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618           97 -IGMAKDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus        97 -~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                       +......++++++|++.. .+......|...        +...... ...|+++|+||+|+........+++..
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  147 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNVQEVINFLAE  147 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcHHHHHHHHHH
Confidence             222244556777777765 222111222211        1111111 234899999999987632223444433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.62  E-value=2.3e-15  Score=125.83  Aligned_cols=127  Identities=20%  Similarity=0.184  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH-HH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~   96 (221)
                      ...+|+++|++|||||||+|+|+|....... ...++|..+....+.+ .+..+.+|||||+........+....+. ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999998653222 2344555555566666 7888999999998542211100000000 00


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....+..+|++++|+|+.++.+..+..+.+.+.+.     ..|+++|+||+|...
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~  306 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVV  306 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGST
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCC
Confidence            11233456999999999878887776655555432     237999999999876

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.60  E-value=4.9e-15  Score=126.01  Aligned_cols=120  Identities=15%  Similarity=0.189  Sum_probs=86.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc----------------cc----cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (221)
                      ...++|+++|++|+|||||+|+|++.....                ..    ....+.|.........+ .+..+.+|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT   89 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT   89 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence            345899999999999999999997322110                00    00123444555556667 8889999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ||+.++..           .+..+++.+|++++|+|+.+.........+..+...     ..|+++|+||+|+...+
T Consensus        90 PG~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           90 PGHADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CCSTTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCSC
T ss_pred             CCchhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcccc
Confidence            99987642           233566778999999999988888887777666543     23799999999987533

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.60  E-value=1.7e-14  Score=114.42  Aligned_cols=130  Identities=14%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CC-----------------------ccee-------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SG-----------------------VTST-------------   57 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~-----------------------~t~~-------------   57 (221)
                      ...++|+++|.+|+|||||+|+|+|....+.....   .+                       .|..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45589999999999999999999998763221100   00                       0000             


Q ss_pred             ----------eEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEE-EEEeCCCCCCHHHH-H
Q 027618           58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-A  123 (221)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~  123 (221)
                                ........+....+.+|||||+.....  ..+.....+...+..++..++.++ +|++++..++..+. .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      001111121246899999999975321  012222334444444555666655 78999866665553 3


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          124 ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +++.+..     ...|+++|+||+|+..
T Consensus       184 ~~~~~~~-----~~~~~i~V~NK~Dl~~  206 (299)
T 2aka_B          184 IAKEVDP-----QGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHHHCT-----TCSSEEEEEECGGGSC
T ss_pred             HHHHhCC-----CCCeEEEEEEccccCC
Confidence            3333321     1348999999999875

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.7e-15  Score=119.72  Aligned_cols=122  Identities=15%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -+|+++|.|+||||||+|+|++.....  ....++|..+....+.+ .+.++.++||||+............++...+..
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            689999999999999999999987433  34567888888888888 899999999999986544444455555555555


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL  150 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~  150 (221)
                      +    |++++|+|++++..  +...+..-.+.++.. ...|.++++||.|+.
T Consensus       150 a----d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          150 C----NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             C----SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             c----CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            4    99999999985432  233333322333432 344788999999973

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.59  E-value=1.2e-14  Score=113.96  Aligned_cols=118  Identities=17%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||+|+|+|.......  ..+.|.......+.+  +..+.+|||||..++.....  .+.+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            478999999999999999999997643232  234455444444332  66899999999987643321  122222221


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      . ...+|++++|+|+++ . .....+...+.+.     ..|+++++||+|..
T Consensus        77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIET-----GIPVTIALNMIDVL  120 (272)
T ss_dssp             H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred             h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence            1 146899999999984 2 2223344444431     34799999999975

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=3.6e-14  Score=107.20  Aligned_cols=154  Identities=19%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ...+|+++|.+|+|||||+|++++... +.....+.+.+  .....+.+ .+.  .+.++||+|...     .     ..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERTLMV-DGESATIILLDMWENKG-----E-----NE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence            447999999999999999999997543 11211122222  22223334 443  467899998542     0     11


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~  170 (221)
                      .....+++.++++++|++++++-+... ..|...+.+... ....|+++|+||+|+.....   .....+.....-.++.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e  181 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE  181 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence            122345678899999999986544333 334444443211 12348999999999864211   1122232222224455


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .++....++.+.++.
T Consensus       182 ~SAk~g~~v~elf~~  196 (211)
T 2g3y_A          182 TSAAVQHNVKELFEG  196 (211)
T ss_dssp             CBTTTTBSHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            677666667666665

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.58  E-value=1.7e-14  Score=107.41  Aligned_cols=154  Identities=18%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ...+|+++|.+|||||||+|++++... +.....+.+.+  .....+.+ .+.  .+.++||+|.......       + 
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~-------~-   73 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERTLMV-DGESATIILLDMWENKGENEW-------L-   73 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEEEEE-TTEEEEEEEECCCCC----CT-------T-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEEEEE-CCeEEEEEEEEeccCcchhhh-------H-
Confidence            348999999999999999999996432 11111111222  22223334 444  4578999986531000       0 


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChh---hHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE---TLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~---~~~~~l~~~~~~~l~  170 (221)
                        ...+++.+|++++|++++++-+... ..++..+.+.... ...|+++|+||+|+......   ....+.......++.
T Consensus        74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e  150 (192)
T 2cjw_A           74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIE  150 (192)
T ss_dssp             --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred             --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEE
Confidence              1123344699999999986544443 3455555554221 23489999999997532111   112222222234556


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .|+....++.+.++.
T Consensus       151 ~SA~~g~~v~~lf~~  165 (192)
T 2cjw_A          151 TSAAVQHNVKELFEG  165 (192)
T ss_dssp             CBTTTTBSHHHHHHH
T ss_pred             eccccCCCHHHHHHH
Confidence            777777777777765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.58  E-value=1.5e-14  Score=109.56  Aligned_cols=122  Identities=10%  Similarity=0.128  Sum_probs=73.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|++|+|||||+|+|++.......... ..+...     .+ ....+.+|||||...+.       ..+..
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~-~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS-SCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeec-CceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence            345689999999999999999999987643221111 111111     12 45678899999986532       12223


Q ss_pred             HHHhhcCCCcEEEEEEeCC-CCCCHH-HHHHHHHHHHHhc--ccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVR-SRFSQE-EEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~-~~~~~~-~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (221)
                      ++......+|++++|+|+. +.-+.. ...++..+.....  .....|+++|+||+|+..
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            3333334469999999998 333322 2334433333211  112358999999999876

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=4.4e-15  Score=127.01  Aligned_cols=127  Identities=20%  Similarity=0.320  Sum_probs=77.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEE----------------------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQ----------------------------------   61 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~----------------------------------   61 (221)
                      ....+|+++|.+|+|||||+|+|+|........+..+.|... ...                                  
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            456899999999999999999999987631111111111111 000                                  


Q ss_pred             --EEEeeCC---ceEEEEeCCCCCCCCCCchHHHHH--HHHHHHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhc
Q 027618           62 --RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFG  133 (221)
Q Consensus        62 --~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~  133 (221)
                        ...+ .+   ..+.||||||+.+....  .+.+.  +...+...+..+|++++|+|+.. .....+..+++.+...  
T Consensus       143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--  217 (550)
T 2qpt_A          143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--  217 (550)
T ss_dssp             EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred             ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence              0001 00   36899999999852111  01110  22333334456799999999985 3666667776665432  


Q ss_pred             ccccccEEEEEecCCCCC
Q 027618          134 KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       134 ~~~~~~~ivv~tk~D~~~  151 (221)
                         ..|+++|+||+|+..
T Consensus       218 ---~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 ---EDKIRVVLNKADMVE  232 (550)
T ss_dssp             ---GGGEEEEEECGGGSC
T ss_pred             ---CCCEEEEEECCCccC
Confidence               237999999999986

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.57  E-value=4.3e-14  Score=117.91  Aligned_cols=119  Identities=13%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEEEEEe
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVL   65 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~   65 (221)
                      ....+|+++|+.++|||||+|+|++.......                               ....+.|.........+
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            44589999999999999999999865411000                               00123444444444555


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (221)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (221)
                       .+..+.+|||||+.++.           ..+...+..+|++++|+|++++...+...++..+... +.   +++++|+|
T Consensus       102 -~~~~~~iiDtpGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN  165 (434)
T 1zun_B          102 -AKRKFIIADTPGHEQYT-----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN  165 (434)
T ss_dssp             -SSEEEEEEECCCSGGGH-----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred             -CCceEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence             67789999999976421           2222345778999999999988887777777665543 32   36999999


Q ss_pred             cCCCCC
Q 027618          146 GGDELE  151 (221)
Q Consensus       146 k~D~~~  151 (221)
                      |+|+..
T Consensus       166 K~Dl~~  171 (434)
T 1zun_B          166 KMDLNG  171 (434)
T ss_dssp             CTTTTT
T ss_pred             cCcCCc
Confidence            999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.56  E-value=4.9e-14  Score=105.33  Aligned_cols=117  Identities=20%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|||||||+++|++........  ...+.......+.+ .+.  .+.+|||||...+....          
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence            4789999999999999999999876532221  12222333344445 553  56789999976433211          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ......++++++|+|+.+..+... ..++..+....  ....|+++++||+|+..
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  124 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred             -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence             123456799999999885444333 34444444331  12347999999999753

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.56  E-value=1.8e-14  Score=121.67  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=80.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEeeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKD   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~   67 (221)
                      .+..+|+++|++++|||||+|+|++.....                             ......+.|.......+.+ .
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence            345899999999999999999997652100                             0011235566666666666 7


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYM  140 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (221)
                      +..+.||||||+.++           ...+...+..+|++++|+|++++       ...+....+..+... +.   +|+
T Consensus       110 ~~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~---~~i  174 (483)
T 3p26_A          110 RANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GI---HNL  174 (483)
T ss_dssp             SCEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TC---CCE
T ss_pred             CceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CC---CcE
Confidence            789999999998542           23334456778999999999865       334455544444432 32   369


Q ss_pred             EEEEecCCCCC
Q 027618          141 IVVFTGGDELE  151 (221)
Q Consensus       141 ivv~tk~D~~~  151 (221)
                      ++|+||+|+..
T Consensus       175 IvviNK~Dl~~  185 (483)
T 3p26_A          175 IIAMNKMDNVD  185 (483)
T ss_dssp             EEEEECGGGGT
T ss_pred             EEEEECcCccc
Confidence            99999999875

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.56  E-value=4.5e-14  Score=114.96  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      +.|+++|++|||||||+|+|++......  ...+.|..+....+.+ .+..+.++||||+....  .....+.+...+ .
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl-~  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTL-S  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHH-H
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHH-H
Confidence            4599999999999999999999875322  2234454455556666 67889999999985421  122233333333 3


Q ss_pred             hcCCCcEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+..+|++++|+|+++..  .... ..+.+.+.+. +.. ..|+++|+||+|+..
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~  306 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKIN  306 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCC
Confidence            457789999999998543  1111 2233444443 322 247999999999886

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.56  E-value=3.1e-14  Score=124.86  Aligned_cols=121  Identities=24%  Similarity=0.316  Sum_probs=83.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc------------c----cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (221)
                      ....++|+++|++|+|||||+|+|++......            +    ....+.|.........+ .+..+.+|||||+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence            34568999999999999999999984221100            0    00124455555556666 7889999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      .++..       +...    ++..+|++++|+|+.+..+..+...+..+.+.     ..|+++|+||+|+...+
T Consensus        86 ~df~~-------~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           86 VDFTV-------EVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             SSCCH-------HHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred             cchHH-------HHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCccccc
Confidence            87542       1222    33446999999999988888887777766542     23799999999988643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.55  E-value=2.5e-14  Score=122.20  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------------ccccCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (221)
                      .+.++|+++|+.++|||||..+|+.....                    .......++|.........| ++..+.||||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT  107 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT  107 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence            45689999999999999999998632211                    01122346677777777888 9999999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      ||+.||..+..           .+++.+|++++|+|+.++...+....++...+.     ..|.++++||+|+...+.
T Consensus       108 PGHvDF~~Ev~-----------raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          108 PGHQDFSEDTY-----------RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CCGGGCSHHHH-----------HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCCCH
T ss_pred             CCcHHHHHHHH-----------HHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhcch
Confidence            99999874333           455666999999999999999999988888764     237999999999886543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.55  E-value=5.1e-14  Score=119.86  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------c----cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (221)
                      ...++|+++|++|+|||||+++|++......                .    ....+.|.........+ .+..+.+|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence            3458999999999999999999986421110                0    01223343444445666 7889999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ||+.++.           ..+..++..+|++++|+|+.+.........++.+...     ..|+++++||+|+...+
T Consensus        90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-----DTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-----TCCEEEEEECTTSCCSC
T ss_pred             CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc-----CCCEEEEEcCcCCcccc
Confidence            9998754           1223456778999999999877776665555544321     23799999999987643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.55  E-value=3.9e-13  Score=111.29  Aligned_cols=153  Identities=14%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEee--------------C--------CceEEE
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLK--------------D--------GQVVNV   73 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l   73 (221)
                      .+..+|+++|+.++|||||+++|+|...... .....+.|.........+.              .        ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4568999999999999999999997643111 1112333443332221110              0        157999


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      |||||+.           .+...+...+..+|++++|+|+++.. ..+..+.+..+.. ++.   .|+++++||+|+...
T Consensus        86 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred             EECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence            9999953           23334445567789999999999776 6666666665543 232   379999999998753


Q ss_pred             Ch-----hhHHHHhccc---CCchhhhhHHHHHhHHHHHH
Q 027618          153 ND-----ETLEDYLGRE---CPKPLKKGATKLRDQQFEVD  184 (221)
Q Consensus       153 ~~-----~~~~~~l~~~---~~~~l~~~~~~~~~~~~~~~  184 (221)
                      +.     ..+.+++...   ....+..|+....++.++++
T Consensus       151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~  190 (408)
T 1s0u_A          151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLK  190 (408)
T ss_dssp             TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHH
Confidence            21     2345555431   12334455555544444333

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.55  E-value=3.7e-14  Score=122.03  Aligned_cols=116  Identities=17%  Similarity=0.232  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~   80 (221)
                      +.++|+++|++++|||||+++|++......  .+.+.|.........+.                 ....+.+|||||+.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            347899999999999999999997654221  12223322222222110                 11258999999998


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++.....           ..+..+|++++|+|+++++.++....+..+...     ..|+++++||+|+..
T Consensus        82 ~F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           82 AFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH  136 (594)
T ss_dssp             CCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred             HHHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence            8765443           456778999999999988888888777766542     237999999999864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.31  E-value=4e-16  Score=117.12  Aligned_cols=118  Identities=17%  Similarity=0.069  Sum_probs=75.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ....+|+++|.+|+|||||++++++.........+   +.......... .....+.+|||||..++.           .
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R   93 (204)
Confidence            45689999999999999999999876543221111   11111111222 023456699999976432           2


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .....+..+|++++|+|++++.+...  ..++..+....+   ..|+++|+||+|+..
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~  148 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  148 (204)
Confidence            22235567799999999986554444  256666655432   348999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=1.4e-13  Score=112.02  Aligned_cols=127  Identities=20%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCC-----
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAG-----   85 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~-----   85 (221)
                      .++|+++|++|+|||||+|+|++...+..+...     ...|........... .+  ..+.+|||||+.+....     
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            478999999999999999999887655433211     012222222222110 22  26899999999654321     


Q ss_pred             --chHHHHHHHHHHHhhc---------CCCcEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           86 --SEFVGKEIVKCIGMAK---------DGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        86 --~~~~~~~~~~~~~~~~---------~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ...+...+..++....         ..+|+++|+++. ...+...+..+++.+    ..  ..|+++|+||+|...
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLT  188 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCC
Confidence              1222222223333221         234788888876 457777776555544    22  348999999999886

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.54  E-value=1.1e-13  Score=104.11  Aligned_cols=126  Identities=14%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~   94 (221)
                      .++.+|+++|++|||||||+|+|+|...........+.+....  ...+ .+ .+.++||||+.......  ........
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            4568999999999999999999998762111111223333222  2223 22 67799999986422111  11122222


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+......++++++|+++....+..+....+++...     ..|++++.||+|.+.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s  151 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLA  151 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCC
Confidence            2222233567999999999877776555554444321     236888999999886

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.54  E-value=8.7e-14  Score=116.14  Aligned_cols=121  Identities=20%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEe
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVL   65 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~   65 (221)
                      +.....+|+++|++++|||||+|+|++.......                             ....+.|.......+.+
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            3456689999999999999999999665321100                             11235666666666666


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccc
Q 027618           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFD  138 (221)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~  138 (221)
                       .+..+.+|||||+.++           ...+...+..+|++++|+|+++...       .+..+.+..+... +.   +
T Consensus        93 -~~~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~  156 (439)
T 3j2k_7           93 -EKKHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---K  156 (439)
T ss_pred             -CCeEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---C
Confidence             7789999999997532           2333344567799999999986653       3455555544432 32   2


Q ss_pred             cEEEEEecCCCCC
Q 027618          139 YMIVVFTGGDELE  151 (221)
Q Consensus       139 ~~ivv~tk~D~~~  151 (221)
                      ++++++||+|+..
T Consensus       157 ~iIvviNK~Dl~~  169 (439)
T 3j2k_7          157 HLIVLINKMDDPT  169 (439)
T ss_pred             eEEEEeecCCCcc
Confidence            4899999999853

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.54  E-value=1.1e-15  Score=129.59  Aligned_cols=116  Identities=16%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      +.++|+++|++++|||||+++|++......  ...+.|.........++.+..+.||||||+.++.....          
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------   70 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------   70 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence            347899999999999999999998765333  33445555555555443566899999999887665443          


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ..+..+|++++|+++++...++....+..+...     ..|+++++||+|+..
T Consensus        71 -~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~  118 (537)
T 3izy_P           71 -RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAE  118 (537)
T ss_dssp             -SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred             -HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence             456778999999999988888887777666543     237999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.54  E-value=2.2e-14  Score=105.87  Aligned_cols=119  Identities=18%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe----eCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ..+|+++|++|||||||+|++++......+.................    .....+.+|||||...+..          
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------   71 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----------   71 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------
Confidence            36899999999999999999998632111111111111111111111    1345788999999643211          


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ....++..++++++|+|++++.+..  ...|+..+....   ...|+++|+||+|+..
T Consensus        72 -~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  126 (184)
T 2zej_A           72 -THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD  126 (184)
T ss_dssp             -TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred             -hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence             1122334568999999998543211  245555554432   1348999999999875

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.54  E-value=4.8e-14  Score=123.65  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc---c---------c----cCCCCcceeeEEEEEEeeCCceEEEEeCC
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFK---S---------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTP   77 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~---~---------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (221)
                      .+....++|+++|++|+|||||+++|+......   .         .    ....+.|.........+ .+..+.+||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP   85 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP   85 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence            344556899999999999999999998321100   0         0    00224555555566667 78899999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      |+.++.       .+..    .++..+|++++|+|+.+....+....+..+.+.     ..|+++++||+|+...+
T Consensus        86 G~~df~-------~~~~----~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           86 GHVDFT-------IEVE----RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             SSTTCH-------HHHH----HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred             CccchH-------HHHH----HHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccCC
Confidence            987642       2222    333456999999999988888887776665542     23799999999988644

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.53  E-value=5.2e-15  Score=124.60  Aligned_cols=115  Identities=16%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      +.++|+++|+.++|||||+++|++......  ...+.|.....+.+.+ .+..+.+|||||+.++.....          
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~----------   69 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRA----------   69 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBC----------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHH----------
Confidence            457899999999999999999987554222  1234444444444555 667899999999988764432          


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ..+..+|++++|++++++..++....+..+...     ..|+++++||+|+..
T Consensus        70 -~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           70 -RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE  117 (501)
T ss_dssp             -SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred             -HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence             456778999999999877777776666655442     237999999999865

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.53  E-value=1.5e-13  Score=115.97  Aligned_cols=117  Identities=18%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc----ccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR----AFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~----~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      +..+|+++|+.++|||||+|+|++..    ... ......+.|.........+ .+..+.+|||||+.           .
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence            35799999999999999999999876    110 1112334566555555666 77899999999963           2


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +...+...+..+|++++|+|+++....+..+.+..+... +    .|.++++||+|+..
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAG  139 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSC
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence            334444566788999999999988888887777766542 3    25799999999875

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.53  E-value=1.5e-13  Score=120.35  Aligned_cols=130  Identities=15%  Similarity=0.160  Sum_probs=83.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------------------------------------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------------------------------------------   52 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~---------------------------------------------   52 (221)
                      ..++|+++|.+++|||||+|+|+|....+.+....                                             
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999987643332111                                             


Q ss_pred             ----CcceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHH-HH
Q 027618           53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE-AA  124 (221)
Q Consensus        53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~-~~  124 (221)
                          +.+.......+..+....++|+||||+.....  ...+....+...+..++ ..+|++++|+|++......+. .+
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                01111122233344556799999999987321  12222233333333222 577999999999877777665 45


Q ss_pred             HHHHHHHhcccccccEEEEEecCCCCCC
Q 027618          125 LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ++.+...     ..|+++|+||+|+...
T Consensus       210 l~~L~~~-----g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          210 AKEVDPQ-----GQRTIGVITKLDLMDE  232 (772)
T ss_dssp             HHHHCTT-----CSSEEEEEECTTSSCT
T ss_pred             HHHHHhc-----CCCEEEEEeCcccCCc
Confidence            5444432     3479999999999863

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.52  E-value=1.5e-13  Score=111.66  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=74.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CCc-----------------------c----------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SGV-----------------------T----------------   55 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~-----------------------t----------------   55 (221)
                      ..++|+++|.+|+|||||+|+|+|....+.....   .+.                       +                
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3479999999999999999999998763222111   000                       0                


Q ss_pred             -------eeeEEEEEEeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHHhhcCC-CcEEEEEEeCCCCCCHHHHHHH
Q 027618           56 -------STCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEEEAAL  125 (221)
Q Consensus        56 -------~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~~~~~  125 (221)
                             .......+..+....+.||||||+......  ..+..+.+...+..++.. .+++++|++++..+...+.  .
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~  187 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L  187 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence                   000001112223567999999999753211  222223344444434333 4566777777755555442  2


Q ss_pred             HHHHHHhcccccccEEEEEecCCCCC
Q 027618          126 HSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +.+.....  ...|+++|+||+|+..
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~  211 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMD  211 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred             HHHHHhCc--CCCceEEEeccccccC
Confidence            33333322  2347999999999885

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.52  E-value=2.8e-14  Score=118.02  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc-------c-cc---c----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------F-KS---R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~-------~-~~---~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      .....+|+++|++++|||||+++|++...       + ..   .    ....+.|.......+.+ .+..+.+|||||+.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~   86 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHA   86 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChH
Confidence            34568999999999999999999987310       0 00   0    00123444444444444 67889999999987


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++           ...+...+..+|++++|+|+++....+...++..+... +.   +++++++||+|+..
T Consensus        87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i---p~iivviNK~Dl~~  142 (405)
T 2c78_A           87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVD  142 (405)
T ss_dssp             GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCC
T ss_pred             HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEECccccC
Confidence            53           12333455678999999999888888877777766543 22   23889999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.52  E-value=9.1e-14  Score=120.20  Aligned_cols=120  Identities=15%  Similarity=0.227  Sum_probs=82.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~   66 (221)
                      ..+..+|+++|++++|||||+|+|++.......                             ....+.|.......+.+ 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            345689999999999999999999976421110                             00135566666666666 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      .+..+.||||||+.+           +...+...+..+|++|+|+|++++       ...+....+..+.. .+   .++
T Consensus       243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~  307 (611)
T 3izq_1          243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN  307 (611)
T ss_dssp             SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred             CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence            778999999999864           234445667889999999999843       23344444443332 23   236


Q ss_pred             EEEEEecCCCCC
Q 027618          140 MIVVFTGGDELE  151 (221)
Q Consensus       140 ~ivv~tk~D~~~  151 (221)
                      +++|+||+|+..
T Consensus       308 iIVVvNKiDl~~  319 (611)
T 3izq_1          308 LIIAMNKMDNVD  319 (611)
T ss_dssp             EEEEEECTTTTT
T ss_pred             EEEEEecccccc
Confidence            999999999875

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.52  E-value=2.6e-13  Score=112.41  Aligned_cols=120  Identities=16%  Similarity=0.269  Sum_probs=79.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEeeC----------------------CceEEE
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKD----------------------GQVVNV   73 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l   73 (221)
                      .+..+|+++|+.++|||||+++|+|...... .....+.|.........+..                      ...+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3458999999999999999999997643111 11123344443332222200                      157899


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      |||||+.+           +...+...+..+|++++|+|+++.. ..+..+.+..+... +.   +|+++++||+|+..
T Consensus        88 iDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~  151 (410)
T 1kk1_A           88 IDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  151 (410)
T ss_dssp             EECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             EECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCC
Confidence            99999532           2233334456779999999999776 66776666655543 33   37999999999876

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.51  E-value=8.8e-14  Score=114.98  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceee-----EEEEEEeeCCceEEEEeCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTC-----EMQRTVLKDGQVVNVIDTPG   78 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~-----~~~~~~~~~~~~~~liDtPG   78 (221)
                      .+..+|+++|++|+|||||+|+|++.......             ......+...     ....... ....+.++||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCC
Confidence            45589999999999999999999985321100             0000000000     0000000 226789999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..++           ...+...+..+|++++|+|+++.. ..+...++..+... +.   .|+++++||+|+..
T Consensus        85 h~~~-----------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~  143 (403)
T 3sjy_A           85 HEVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVS  143 (403)
T ss_dssp             CGGG-----------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             cHHH-----------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccc
Confidence            6432           233334556789999999999776 66667777666543 33   37999999999886

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.51  E-value=1.1e-13  Score=111.08  Aligned_cols=116  Identities=19%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ...+|+++|.+|+|||||++++++.......   .+.+.......... .+.  .+.+|||||...+...          
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------  219 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL----------  219 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTT----------
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHH----------
Confidence            3489999999999999999999976542221   12222222223333 444  4559999998654322          


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                       ....+..+|++++|+|++++.+..+.  .++..+....+   ..|+++|+||+|+..
T Consensus       220 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  273 (332)
T 2wkq_A          220 -RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  273 (332)
T ss_dssp             -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred             -HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence             22467788999999999865544442  46666665432   348999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.50  E-value=7.4e-14  Score=122.52  Aligned_cols=121  Identities=18%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-------------ceee--------------------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-------------TSTC--------------------------   58 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-------------t~~~--------------------------   58 (221)
                      ...+|+++|.+|+|||||+|+|+|....+.+..+...             +...                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4589999999999999999999998865443222110             0000                          


Q ss_pred             -------------EEEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH
Q 027618           59 -------------EMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE  122 (221)
Q Consensus        59 -------------~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~  122 (221)
                                   ....+.++..   ..+.+|||||+.+...        ....+...++.+|++++|++++...+..+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~  219 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER  219 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence                         0000111000   4689999999875211        112333445667999999999878887776


Q ss_pred             HHHH-HHHHHhcccccccEEEEEecCCCCC
Q 027618          123 AALH-SLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       123 ~~~~-~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+. .+.+     ...|+++|+||+|...
T Consensus       220 ~~l~~~l~~-----~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          220 RYLENYIKG-----RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             HHHHHHTTT-----SCCCEEEEEECGGGGG
T ss_pred             HHHHHHHHh-----hCCCEEEEEECccccc
Confidence            5443 2221     1236999999999864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.50  E-value=2.4e-13  Score=112.18  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      +..+|+++|+.++|||||+++|++......              .....+.|.......+.+ .+..+.+|||||+.+  
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--   78 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--   78 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence            347899999999999999999987421000              001234455444444444 568899999999642  


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               +...+...+..+|++++|+|+++....+....+..+... +.   +++++++||+|+..
T Consensus        79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v---p~iivviNK~Dl~~  133 (397)
T 1d2e_A           79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQ  133 (397)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCS
T ss_pred             ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC---CeEEEEEECcccCC
Confidence                     233444567889999999999988888777777655542 22   23789999999874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.50  E-value=3.7e-13  Score=118.21  Aligned_cols=121  Identities=20%  Similarity=0.276  Sum_probs=83.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc------------c----cCCCCcceeeEEEEEEeeCC-------ceEE
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDG-------QVVN   72 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~-------~~~~   72 (221)
                      ....++|+++|+.|+|||||+++|+.......            +    ....+.|.........| .+       ..+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence            45568999999999999999999975321000            0    00234455555555656 54       7899


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ||||||..++.       .+    +..++..+|++++|+|+.+....+....+..+...     ..|+++++||+|+...
T Consensus        86 liDTPG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFT-------IE----VERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchH-------HH----HHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence            99999987643       12    22344566999999999978777776666555432     2378999999998764


Q ss_pred             C
Q 027618          153 N  153 (221)
Q Consensus       153 ~  153 (221)
                      +
T Consensus       150 ~  150 (704)
T 2rdo_7          150 N  150 (704)
T ss_pred             c
Confidence            3

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.50  E-value=7.9e-14  Score=119.80  Aligned_cols=120  Identities=22%  Similarity=0.264  Sum_probs=75.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEee--C--CceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~   80 (221)
                      ..++|+++|+.++|||||+++|++.......             ....+.|.........|.  .  ...+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            4589999999999999999999763211000             011234444444444442  1  2578899999987


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ++.       .++.    .++..+|++++|+|+.++...+....+....+.     ..|+++++||+|+...+
T Consensus        85 dF~-------~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           85 DFS-------YEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD  141 (600)
T ss_dssp             GGH-------HHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred             hHH-------HHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC
Confidence            642       2222    334566999999999988888776655554432     23799999999987643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.49  E-value=8.3e-14  Score=119.15  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE----EEEee---CCceEEEEeCCCCCCCCCCchHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFV   89 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtPG~~~~~~~~~~~   89 (221)
                      ....+|+++|.+|||||||+|++++.........+.+.+......    .+...   .+..+.++||||...+.....  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--  116 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--  116 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence            455899999999999999999999876532211111111111100    11110   256899999999765543322  


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               ..+..+|++++|+|+++ . .....|+..+.+..+   ..|+++|+||+|...
T Consensus       117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~  164 (535)
T 3dpu_A          117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENP  164 (535)
T ss_dssp             ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred             ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence                     23445799999999873 2 344677777777532   248999999999875

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.49  E-value=1.1e-13  Score=115.37  Aligned_cols=119  Identities=24%  Similarity=0.316  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc--cccc---------------------------ccCCCCcceeeEEEEEEeeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR--AFKS---------------------------RASSSGVTSTCEMQRTVLKD   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~--~~~~---------------------------~~~~~~~t~~~~~~~~~~~~   67 (221)
                      .+.++|+++|+.++|||||+++|++..  ....                           .....+.|.........+ .
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence            345899999999999999999998642  1000                           001234555555555666 7


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYM  140 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (221)
                      +..+.+|||||+.++           ...+...+..+|++++|+|+++.       ...+..+.+..+... +   .+++
T Consensus        83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~---~~~i  147 (435)
T 1jny_A           83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G---LDQL  147 (435)
T ss_dssp             SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T---CTTC
T ss_pred             CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCeE
Confidence            788999999998752           12344567889999999999864       222333333333322 2   2368


Q ss_pred             EEEEecCCCCC
Q 027618          141 IVVFTGGDELE  151 (221)
Q Consensus       141 ivv~tk~D~~~  151 (221)
                      ++++||+|+..
T Consensus       148 ivviNK~Dl~~  158 (435)
T 1jny_A          148 IVAVNKMDLTE  158 (435)
T ss_dssp             EEEEECGGGSS
T ss_pred             EEEEEcccCCC
Confidence            99999999875

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.48  E-value=8.4e-14  Score=119.78  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeC----CceEEEEeCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLF   80 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG~~   80 (221)
                      ..++|+++|+.++|||||+++|+........             ....+.|.........|..    ...+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            3589999999999999999999863211000             0123455555555555521    3578899999987


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ++.       .++...    +..+|++++|+|+.++...+....+......     ..|+++++||+|+...+
T Consensus        83 dF~-------~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           83 DFS-------YEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             GGH-------HHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred             HHH-------HHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc
Confidence            642       223333    3445999999999988887776655544432     23799999999987643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.48  E-value=5e-13  Score=99.26  Aligned_cols=117  Identities=21%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|++|||||||++++++...+...  ....+.......+.+ .+..  +.++||||...+.....         
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~---------   96 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS---------   96 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH---------
Confidence            479999999999999999999987654322  122233333444545 5543  45699999875433221         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..+..++++++|+|..+..+... ..++..+.+..  ....|+++++||+|+..
T Consensus        97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred             --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence              23456689999999874433222 23444444321  12347999999999753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.47  E-value=8.6e-14  Score=116.74  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc-ccc------------------------c----cCCCCcceeeEEEEEEeeCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKS------------------------R----ASSSGVTSTCEMQRTVLKDG   68 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~------------------------~----~~~~~~t~~~~~~~~~~~~~   68 (221)
                      +..+|+++|++++|||||+|+|++... ...                        .    ....+.|.......+.+ .+
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence            458999999999999999999986420 000                        0    00134555555455555 67


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccccEE
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i  141 (221)
                      ..+.+|||||+.+           +...+...+..+|++++|+|+++...+       +....+..+.. .+   .++++
T Consensus        85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQLI  149 (458)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeEE
Confidence            7899999999753           223344567889999999999854322       33333333332 22   23589


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +++||+|+..
T Consensus       150 vviNK~Dl~~  159 (458)
T 1f60_A          150 VAVNKMDSVK  159 (458)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEEcccccc
Confidence            9999999873

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.47  E-value=3.3e-13  Score=107.49  Aligned_cols=120  Identities=14%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|.+|+||||+++.+.+...+.. ....++|.......+  .....+.+|||||..++....  +      .....
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence            489999999999999998876543221 111223333332222  144789999999998763210  0      11245


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +++++++++|+|+++++......+.+++.+........|+++++||+|+..
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~  120 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS  120 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence            688899999999987733322333333333211112348999999999876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.46  E-value=2.5e-13  Score=110.89  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++++|||||+++|+          ..+.|.........+ .+..+.+|||||+.++.       ..    +...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~-------~~----~~~~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTL-------KS----LITA   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCH-------HH----HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHH-------HH----HHHH
Confidence            89999999999999999998          112344444445555 67789999999987642       22    2233


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCC
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE  149 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~  149 (221)
                      +..+|++++|+| ++....+..+++..+... +.+   .+++++| |+|+
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl  125 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST  125 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC
Confidence            466799999999 767777777777666543 322   3488999 9998

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.43  E-value=2.2e-14  Score=123.67  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEee
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLK   66 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~   66 (221)
                      ....++|+++|++++|||||+|+|++.......                             ....++|.......+.+ 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            445678999999999999999999753211000                             01234566665555665 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      .+..+.||||||+.++....           ...+..+|++|+|+|++++.       ..+....+..+... +.   ++
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~-----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~  317 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGM-----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SE  317 (592)
T ss_dssp             ------CCEEESSSEEEEEC-----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CC
T ss_pred             CCeEEEEEECCChHHHHHHH-----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---Ce
Confidence            66789999999987643221           13446679999999998542       55566665555542 32   25


Q ss_pred             EEEEEecCCCCC
Q 027618          140 MIVVFTGGDELE  151 (221)
Q Consensus       140 ~ivv~tk~D~~~  151 (221)
                      +++|+||+|+..
T Consensus       318 iIvviNKiDl~~  329 (592)
T 3mca_A          318 IVVSVNKLDLMS  329 (592)
T ss_dssp             EEEEEECGGGGT
T ss_pred             EEEEEecccccc
Confidence            899999999865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.43  E-value=1.8e-12  Score=107.04  Aligned_cols=125  Identities=16%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..|+|+|++|||||||+|+|++.......  ....|..+....+.+.....++++||||+.+.......+...+.    .
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl----~  231 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----R  231 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----H
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH----H
Confidence            45899999999999999999988542222  22334445555565522378999999998653111111111221    2


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++.+++|++++ +-...+ ..+.+.+..+...-...|.++|+||+|...
T Consensus       232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            235679999999997 222222 333344443311112458899999999876

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.42  E-value=2.9e-12  Score=105.86  Aligned_cols=128  Identities=17%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCchHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFV   89 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~   89 (221)
                      +-.+.|+++|++|+|||||+|+|+|...+..+...    ...+.......+..   .....++++||||+...... ...
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~  107 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC  107 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence            33478999999999999999999998764332110    01121111111111   01236889999999764211 111


Q ss_pred             HHHHH----HHHHh-----------hc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           90 GKEIV----KCIGM-----------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        90 ~~~~~----~~~~~-----------~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +..+.    ..+..           .+  +.+|+++|++... ..+.+.+..+++.+..      ..++++|+||+|...
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~  181 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  181 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence            11221    11111           11  3456788888775 5788888766665542      247999999999886

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=1.1e-12  Score=107.93  Aligned_cols=91  Identities=14%  Similarity=0.031  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------------C---CceEEEEeC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------D---GQVVNVIDT   76 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt   76 (221)
                      .+|+++|.+|+|||||+|+|++......  ...++|..+......+.                    .   ...+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~--~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            3789999999999999999999863211  12223333333321110                    1   246899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC
Q 027618           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR  116 (221)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~  116 (221)
                      ||+.......    +.+...+...++.+|++++|+|+.+.
T Consensus        79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9997532211    11222222456888999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.40  E-value=2.6e-13  Score=114.11  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-------------------------cc----cCCCCcceeeEEEEEEeeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-------------------------SR----ASSSGVTSTCEMQRTVLKD   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-------------------------~~----~~~~~~t~~~~~~~~~~~~   67 (221)
                      .+..+|+++|+.++|||||+++|++.....                         .+    ....+.|.......+.+ .
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence            445799999999999999999997422100                         00    01234555555455555 6


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccccE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM  140 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~  140 (221)
                      +..+.+|||||+.++.           ..+...+..+|++++|+|++++..       .+....+..+.. .+.   +++
T Consensus       120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i  184 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL  184 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred             CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence            7889999999987543           222345678899999999986531       233333333332 222   248


Q ss_pred             EEEEecCCCCC
Q 027618          141 IVVFTGGDELE  151 (221)
Q Consensus       141 ivv~tk~D~~~  151 (221)
                      ++++||+|+..
T Consensus       185 ivviNK~Dl~~  195 (467)
T 1r5b_A          185 VVVINKMDEPS  195 (467)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEECccCCC
Confidence            99999999854

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.40  E-value=1.9e-12  Score=113.11  Aligned_cols=117  Identities=29%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC----------------CCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (221)
                      ....+|+++|++|+|||||+++|++.........                ..+.+.........+ ....+.+|||||..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence            4458999999999999999999985432100000                123455555556666 78899999999987


Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      ++.       .....    ++..+|++++|+|+.+........++..+...     ..|+++++||+|+.
T Consensus        86 ~f~-------~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFV-------GEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             chH-------HHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence            531       22333    33445999999999888888888777777653     23789999999987

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.39  E-value=1.6e-13  Score=119.39  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=89.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      .++|+++|+.++|||||..+|+........                ....+.|.........| ++..+.||||||+.||
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence            478999999999999999998633221110                00125666666667778 8899999999999987


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      ...           +..+++.+|+.++|+|+.++...+....++...+. +    .|.++++||+|+...+
T Consensus        81 ~~E-----------v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           81 LAE-----------VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM-G----IPTIFFINKIDQNGID  135 (638)
T ss_dssp             HHH-----------HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T----CSCEECCEECCSSSCC
T ss_pred             HHH-----------HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCeEEEEeccccccCC
Confidence            532           22456677999999999999999999888888775 3    2678999999987654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.39  E-value=8.5e-13  Score=118.02  Aligned_cols=118  Identities=22%  Similarity=0.267  Sum_probs=79.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------------C
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------D   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~   67 (221)
                      ...++|+++|+.|+|||||+++|++.......              ....+.|.........|.               .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            34589999999999999999999865321110              011233433333344442               1


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..+.+|||||+.++..           .+..+++.+|++++|+|+.++.+.++...+..+...     ..|+++++||+
T Consensus        97 ~~~i~liDTPG~~df~~-----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~  160 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKV  160 (842)
T ss_dssp             EEEEEEECCCCCCSSCH-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECH
T ss_pred             CceEEEEECcCchhhHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECC
Confidence            56789999999988652           122344567999999999988888886665554331     23789999999


Q ss_pred             CCC
Q 027618          148 DEL  150 (221)
Q Consensus       148 D~~  150 (221)
                      |+.
T Consensus       161 D~~  163 (842)
T 1n0u_A          161 DRA  163 (842)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            976

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.39  E-value=4.1e-12  Score=115.01  Aligned_cols=120  Identities=17%  Similarity=0.201  Sum_probs=80.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..+..+|+++|+.++|||||+++|++.....              ......+.|.......+.. .+..+.+|||||+.+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence            3456899999999999999999998742100              0011234444433333444 668899999999643


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                                 +...+...+..+|++++|+|++++...+..+++..+... +.   +++++++||+|+..
T Consensus       372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI---P~IIVVINKiDLv~  426 (1289)
T 3avx_A          372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV---PYIIVFLNKCDMVD  426 (1289)
T ss_dssp             -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC---SCEEEEEECCTTCC
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC---CeEEEEEeeccccc
Confidence                       234444567889999999999988777777777666543 32   23789999999875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.39  E-value=1.3e-12  Score=115.07  Aligned_cols=122  Identities=27%  Similarity=0.354  Sum_probs=85.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEee------CCceEEE
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLK------DGQVVNV   73 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~------~~~~~~l   73 (221)
                      -++.++|+++|+.++|||||..+|+.......                .....++|......+..|.      ++..+.|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            34568999999999999999998864332100                1223456666666666662      1468999


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      |||||+.||..       ++..++..    +|++++|+|+.++...+....+++..+. +    .|.++++||+|+...+
T Consensus        90 IDTPGHvDF~~-------Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~-~----lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           90 IDTPGHVDFTI-------EVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKY-G----VPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             ECCCSCTTCHH-------HHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHH-T----CCEEEEEECSSSTTCC
T ss_pred             EeCCCCcccHH-------HHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEccccccCcc
Confidence            99999999753       33344444    4999999999999999999988888765 2    3799999999997644

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.36  E-value=6.1e-12  Score=98.37  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCc---hH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGS---EF   88 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~---~~   88 (221)
                      ++++++|++|+|||||+|+|+|...+..+..      ............+.-  .-...++++|+||+.......   +.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            6899999999999999999999876544311      111111111111110  012368999999997633211   11


Q ss_pred             HHH----HHHHHHHhh----------cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618           89 VGK----EIVKCIGMA----------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (221)
Q Consensus        89 ~~~----~~~~~~~~~----------~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (221)
                      +..    .........          ...+++.+++++.. .++++.+...++.+.+.      .++++|++|+|.+.  
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt--  154 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT--  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC--
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC--
Confidence            211    122222211          12358888888854 68899997777777652      37999999999997  


Q ss_pred             hhhHHH
Q 027618          154 DETLED  159 (221)
Q Consensus       154 ~~~~~~  159 (221)
                      ......
T Consensus       155 ~~e~~~  160 (270)
T 3sop_A          155 LEEKSE  160 (270)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.34  E-value=6.6e-12  Score=103.45  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC--CCCcceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCc
Q 027618           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGS   86 (221)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~   86 (221)
                      +.-..+..+.++++|++|+|||||+|+|+|.........  ..+.+.. ... +.+...   ..++++|+||+..... .
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~-~v~Q~~~l~~~ltv~D~~~~g~~~~-~  111 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNT-YDLQESNVRLKLTIVSTVGFGDQIN-K  111 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEE-EEEEC--CEEEEEEEEEECCCC-CC-H
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEE-EEeecCccccccchhhhhhhhhccc-c
Confidence            333444334599999999999999999999864211111  1122221 111 111121   2689999999976321 1


Q ss_pred             hH--------HHHHHHHHHHhh---------cC--CCcE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           87 EF--------VGKEIVKCIGMA---------KD--GIHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        87 ~~--------~~~~~~~~~~~~---------~~--~~~~-il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      ..        +...+...+...         .+  .+|+ ++++.+...+++..+..+++.|.    .  ..|+++|+||
T Consensus       112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~K  185 (427)
T 2qag_B          112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----S--KVNIIPIIAK  185 (427)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----S--CSEEEEEESC
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcc
Confidence            11        112222222221         01  1344 55566777788888876666554    1  3479999999


Q ss_pred             CCCCC
Q 027618          147 GDELE  151 (221)
Q Consensus       147 ~D~~~  151 (221)
                      +|.+.
T Consensus       186 tD~Lt  190 (427)
T 2qag_B          186 ADAIS  190 (427)
T ss_dssp             GGGSC
T ss_pred             hhccc
Confidence            99986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.32  E-value=2e-11  Score=96.98  Aligned_cols=128  Identities=20%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCC----CCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCC---c
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR-AFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAG---S   86 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~---~   86 (221)
                      -.++|+++|++|+|||||+|+|++.. .+..+...    ...+.......+..   .....+.++||||+......   .
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            34899999999999999999999873 32222100    00111111111111   12347899999999532110   0


Q ss_pred             hHHHHHHH----HHHHhh---------cCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           87 EFVGKEIV----KCIGMA---------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        87 ~~~~~~~~----~~~~~~---------~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+...+.    ..+...         ...+++++|+++... .+.+.+.   +.++.. ..  ..++++|+||+|...
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~--~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HN--KVNIVPVIAKADTLT  169 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TT--TSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-Hh--cCCEEEEEEeCCCCC
Confidence            11222111    222211         123466888887643 4777764   334443 22  237999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.30  E-value=3e-12  Score=99.45  Aligned_cols=82  Identities=12%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             CCcEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-CCchhhhhHHHHH
Q 027618          103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-CPKPLKKGATKLR  177 (221)
Q Consensus       103 ~~~~il~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-~~~~l~~~~~~~~  177 (221)
                      .+|++++|+|++++  .+... ..++..+.+.... ...|+++|+||+|+.... .....++.... ....+..++....
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~  240 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNV  240 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence            57999999999865  55544 4556655544221 134899999999986411 12233333321 2234445555555


Q ss_pred             hHHHHHHh
Q 027618          178 DQQFEVDS  185 (221)
Q Consensus       178 ~~~~~~~~  185 (221)
                      ++.+.++.
T Consensus       241 gv~elf~~  248 (255)
T 3c5h_A          241 NVDLAFST  248 (255)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55554443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.22  E-value=8.8e-12  Score=100.89  Aligned_cols=90  Identities=17%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~   83 (221)
                      .+|+++|.+|+|||||+|+|++......  ...++|..+....+.++.                ...+.++||||+..+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999998763211  122334444444444412                2469999999998642


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (221)
                      ...+.+...+.    ..++.+|++++|+|+.+
T Consensus        81 ~~~~gl~~~fl----~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFL----ANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHH----HHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHH----HHHHhcCeEEEEEecCC
Confidence            11111222222    23456799999999874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.21  E-value=2.6e-11  Score=98.50  Aligned_cols=62  Identities=19%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+..+.||||||+..    ..          ......+|++++|++........      .++..   -...|.++|+||
T Consensus       170 ~~~~~iiiDTpGi~~----~~----------~~~~~~aD~vl~V~d~~~~~~~~------~l~~~---~~~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQ----SE----------VAVANMVDTFVLLTLARTGDQLQ------GIKKG---VLELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSS----HH----------HHHHTTCSEEEEEEESSTTCTTT------TCCTT---SGGGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCc----HH----------HHHHHhCCEEEEEECCCCCccHH------HHHHh---HhhcCCEEEEEC
Confidence            467899999999764    11          01236789999999976322111      11110   112378999999


Q ss_pred             CCCCC
Q 027618          147 GDELE  151 (221)
Q Consensus       147 ~D~~~  151 (221)
                      +|+..
T Consensus       227 ~Dl~~  231 (355)
T 3p32_A          227 ADGEH  231 (355)
T ss_dssp             CCGGG
T ss_pred             CCCcC
Confidence            99864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.21  E-value=5e-13  Score=109.04  Aligned_cols=123  Identities=19%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccc-----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+|+++|.+|+|||||+|+|++.....     ......++|.......  +  +..+.++||||+.+.....+.+..+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L--DEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            3689999999999999999999874211     1112334444443322  2  33488999999987643333232222


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+. ....++.++|+++............++.+..     ...|+++++||.|.+.
T Consensus       236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEE
T ss_pred             HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCccccc
Confidence            22221 1356688889988742211111111222211     1237999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=98.05  Aligned_cols=25  Identities=28%  Similarity=0.084  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....|+++|++|||||||+|+|++.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999973

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.18  E-value=3.2e-11  Score=98.57  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL   79 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~   79 (221)
                      -....+|+++|.+|+|||||+|+|++.....  ....++|..+....+.++.                ...+.++||||+
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            3445889999999999999999999986521  1233344444444444411                235899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (221)
                      .......+.+...    +...++.+|++++|+|+.+
T Consensus        97 ~~~as~~~glg~~----~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           97 VKGAHNGQGLGNA----FLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             ----------CCH----HHHHHHTSSSEEEEEEC--
T ss_pred             ccccchhhHHHHH----HHHHHHhcCeEEEEEecCC
Confidence            8643322222222    2334456799999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.17  E-value=1.3e-10  Score=93.97  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=37.6

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+..+.++||||+.++    ..          .....+|++++|+++.....      ++.++..   ....|.++|+||
T Consensus       147 ~~~~i~liDTpG~~~~----~~----------~~~~~aD~vl~Vvd~~~~~~------~~~l~~~---~~~~p~ivv~NK  203 (341)
T 2p67_A          147 AGYDVVIVETVGVGQS----ET----------EVARMVDCFISLQIAGGGDD------LQGIKKG---LMEVADLIVINK  203 (341)
T ss_dssp             TTCSEEEEEEECCTTH----HH----------HHHTTCSEEEEEECC------------CCCCHH---HHHHCSEEEECC
T ss_pred             cCCCEEEEeCCCccch----HH----------HHHHhCCEEEEEEeCCccHH------HHHHHHh---hhcccCEEEEEC
Confidence            5678999999998752    11          02367899999999863211      1111110   011268999999


Q ss_pred             CCCCC
Q 027618          147 GDELE  151 (221)
Q Consensus       147 ~D~~~  151 (221)
                      +|...
T Consensus       204 ~Dl~~  208 (341)
T 2p67_A          204 DDGDN  208 (341)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            99875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.15  E-value=5e-13  Score=109.08  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC-----cccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+|+++|.+|+|||||+|+|++.     ...... ...++|.......    .+..+.++||||+.+.......+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            468999999999999999999987     222122 2334455444322    233478999999987543333222222


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR  163 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~  163 (221)
                      ...+. ....++.++|+++............++.+..     ...|+++++||.|.+... -....+++++
T Consensus       237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~~~~~~~~~~~~~~~  301 (369)
T 3ec1_A          237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTVHRTKLEKADSLYAN  301 (369)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred             HHHHh-cccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCcccccccHHHHHHHHHH
Confidence            22221 1256799999998842211111111222211     123799999999987522 2334444443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.12  E-value=1.9e-10  Score=94.15  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC-----------------ceEEEEeCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTP   77 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtP   77 (221)
                      .-..+.+|+++|++|||||||+|+|+|....... ...++|..+....+.+ .+                 ..+.++|||
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~p   93 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIA   93 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecc
Confidence            3455689999999999999999999997642222 2334455555555555 32                 357899999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      |+.......+.+...+..    .+..+|++++|+++.
T Consensus        94 Gl~~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           94 GLTKGASTGVGLGNAFLS----HVRAVDAIYQVVRAF  126 (392)
T ss_dssp             GGCCCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred             ccccCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence            998654333323223332    345679999999975

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.11  E-value=1.1e-10  Score=94.85  Aligned_cols=90  Identities=20%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------------CCceEEEEeCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL   79 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~   79 (221)
                      .+|+++|.+|+|||||+|+|++......  .....|..+......++                    .+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5789999999999999999998642111  12223333333333221                    2357899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (221)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (221)
                      ..+....+.+...+...    ++.+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence            87543333333333333    345699999999874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.08  E-value=5.6e-10  Score=95.67  Aligned_cols=109  Identities=18%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCC-CchHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA-GSEFVGK   91 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~-~~~~~~~   91 (221)
                      ..+..+|+++|.+|+|||||+|+|+|.... ..+..+.+.|........+.  ..+..+.|+||||+.+... .......
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~  114 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW  114 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence            345588999999999999999999998642 11111223333332222211  1467899999999987543 2221111


Q ss_pred             HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 027618           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (221)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~  130 (221)
                      .+.-.+..+    +  ++|+++...++..+...+..+.+
T Consensus       115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence            111111111    2  45566655788888666665544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.05  E-value=4.4e-09  Score=88.73  Aligned_cols=121  Identities=17%  Similarity=0.167  Sum_probs=71.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eeEEEE-----------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQR-----------------   62 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~-----------------   62 (221)
                      .+..+|+++|++|+||||+++.|+      |..+......+.....           ......                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            445789999999999999999998      6654322211100000           000000                 


Q ss_pred             EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EE
Q 027618           63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MI  141 (221)
Q Consensus        63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i  141 (221)
                      ..+ .+..++||||||....   ......++..... . ..+|.+++|+|+.....  .....+.+.+    .  .| ..
T Consensus       179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~--~~~~a~~~~~----~--~~i~g  244 (504)
T 2j37_W          179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQA--CEAQAKAFKD----K--VDVAS  244 (504)
T ss_dssp             HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTT--HHHHHHHHHH----H--HCCCC
T ss_pred             HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEecccccc--HHHHHHHHHh----h--cCceE
Confidence            011 4568999999998752   2334455544433 2 26799999999985543  2233333332    1  24 48


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +|+||+|...
T Consensus       245 vVlNK~D~~~  254 (504)
T 2j37_W          245 VIVTKLDGHA  254 (504)
T ss_dssp             EEEECTTSCC
T ss_pred             EEEeCCcccc
Confidence            9999999875

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.05  E-value=1.2e-09  Score=94.71  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc-ccccC-CCCcce-----------eeE---------------------------
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRAS-SSGVTS-----------TCE---------------------------   59 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~-~~~~~-~~~~t~-----------~~~---------------------------   59 (221)
                      +.|+++|++|||||||+++|+|...+ ..+.. ..+...           ...                           
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            45999999999999999999998655 22211 111110           000                           


Q ss_pred             ------------EEEEEeeCCceEEEEeCCCCCC--CCCCchHHHHHHHHHHHhhcCCC-cEEEEEEeCCCCCCHHHHHH
Q 027618           60 ------------MQRTVLKDGQVVNVIDTPGLFD--FSAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAA  124 (221)
Q Consensus        60 ------------~~~~~~~~~~~~~liDtPG~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~  124 (221)
                                  ......+....+.++|.||+..  +.+.+......+...+....... ..+++++..+..+.  ....
T Consensus       126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~  203 (608)
T 3szr_A          126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA  203 (608)
T ss_dssp             HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred             cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence                        0001111235689999999875  33333445566666666544444 45556666543333  2234


Q ss_pred             HHHHHHHhcccccccEEEEEecCCCCC
Q 027618          125 LHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++.+++.-..  ..+.++|+||+|.+.
T Consensus       204 l~la~~v~~~--g~rtI~VlTK~Dlv~  228 (608)
T 3szr_A          204 LSMAQEVDPE--GDRTIGILTKPDLVD  228 (608)
T ss_dssp             HHHHHHHCSS--CCSEEEEEECGGGSS
T ss_pred             HHHHHHHhhc--CCceEEEecchhhcC
Confidence            4445544221  236999999999875

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.01  E-value=9e-10  Score=86.60  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (221)
                      ....+|+++|.+|+|||||+|+|++......+. ..+.|...+.  +.  .+..+.++||||+........
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~  183 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VK--VGKELELLDTPGILWPKFEDE  183 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence            345799999999999999999999987544432 2344544432  22  245789999999987654443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.98  E-value=4.5e-09  Score=81.49  Aligned_cols=128  Identities=14%  Similarity=0.036  Sum_probs=68.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh-----CCcccccccCCCCccee----------eEEEEE------------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL-----GRRAFKSRASSSGVTST----------CEMQRT------------------   63 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~-----~~~~~~~~~~~~~~t~~----------~~~~~~------------------   63 (221)
                      .....+++.|+.|+||||+++.|+     |..+......+......          ......                  
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            445778889999999999999998     66543322221110000          000000                  


Q ss_pred             ------------EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH-HHHHHHH
Q 027618           64 ------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQT  130 (221)
Q Consensus        64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~  130 (221)
                                  .+..+..+.++||||..+.    . ....+...+...+.. +++++|+|+....+..+.. .......
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~----~-~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~  165 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMET----F-LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL  165 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHH----H-HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccch----h-hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence                        0001237899999997631    1 111111122223345 8899999886455555422 1111111


Q ss_pred             HhcccccccEEEEEecCCCCC
Q 027618          131 LFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       131 ~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ... ....|+++|+||+|...
T Consensus       166 ~~~-~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          166 IDL-RLGATTIPALNKVDLLS  185 (262)
T ss_dssp             HHH-HHTSCEEEEECCGGGCC
T ss_pred             Hhc-ccCCCeEEEEecccccc
Confidence            111 11347899999999876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.93  E-value=1.1e-09  Score=88.16  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+..++++|++|||||||+|.|++.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34589999999999999999999853

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.93  E-value=7.1e-09  Score=85.40  Aligned_cols=119  Identities=20%  Similarity=0.171  Sum_probs=69.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-eeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ...++++|++|||||||+|+|+|...+..+....+.+ ...............++++|+||+......    ..++...+
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~  144 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM  144 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence            3589999999999999999999976554442211111 100011111112246899999998742211    22222222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                      .  +...+..++ ++.. +...+...+...+...     ..|+++|.||.|.+
T Consensus       145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll  188 (413)
T 1tq4_A          145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  188 (413)
T ss_dssp             T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             C--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence            1  223345554 7766 4566666666666543     23799999999865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.80  E-value=4.9e-09  Score=81.52  Aligned_cols=60  Identities=30%  Similarity=0.410  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (221)
                      .+++++|.+|+|||||+|+|++......+. ..+.|.....  +.  .+..+.++||||+.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQW--FS--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence            589999999999999999999987643332 2344443322  11  345788999999997654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.79  E-value=1.6e-08  Score=83.64  Aligned_cols=123  Identities=19%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCC---------------CCcceeeEE-------------EEE
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEM-------------QRT   63 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~---------------~~~t~~~~~-------------~~~   63 (221)
                      ++..|+++|++|+||||++..|+      |..+.......               .+.......             ...
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46889999999999999999887      33221111000               000000000             000


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      .. .+..++++||||..... .......++.......  .++.+++|+|+...  .......+.+.+.     ..+..+|
T Consensus       176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~-----~~~~gVI  244 (433)
T 3kl4_A          176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQA-----SPIGSVI  244 (433)
T ss_dssp             TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHH-----CSSEEEE
T ss_pred             Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcc-----cCCcEEE
Confidence            01 35678999999975411 2334555555544333  45899999998743  2223333444432     2357899


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||.|...
T Consensus       245 lTKlD~~a  252 (433)
T 3kl4_A          245 ITKMDGTA  252 (433)
T ss_dssp             EECGGGCS
T ss_pred             Eecccccc
Confidence            99999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.76  E-value=1.2e-07  Score=78.63  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCc-----------ceeeEEEEE---------------Ee
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGV-----------TSTCEMQRT---------------VL   65 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~   65 (221)
                      ++..|+++|++|+||||++..|+      |..+......+...           ......+..               ..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998887      33321111110000           000000000               00


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                       ..+..+++|||||...   .......++......  ..+|.+++|+|+...  .......+.+.+.     .....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~-----~~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEA-----TPIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHS-----CTTEEEEE
T ss_pred             HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhh-----CCCeEEEE
Confidence             0246789999999764   234455555554322  346899999998743  2222333333332     23577999


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||+|...
T Consensus       247 TKlD~~~  253 (443)
T 3dm5_A          247 TKLDGSA  253 (443)
T ss_dssp             ECCSSCS
T ss_pred             ECCCCcc
Confidence            9999764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.72  E-value=1.4e-08  Score=76.64  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+.|+++|.+|+|||||++.|++.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999865

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.63  E-value=1.1e-07  Score=78.94  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+...|+++|++++|||||+|.|+|.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34578899999999999999999974

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.60  E-value=3.6e-07  Score=73.31  Aligned_cols=81  Identities=11%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             EEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC-------C-CCHHHHHHHHHHHH
Q 027618           59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------R-FSQEEEAALHSLQT  130 (221)
Q Consensus        59 ~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~-~~~~~~~~~~~l~~  130 (221)
                      ......+ .+..+.+|||+|..           ..+..+..+++.++++|+|+|+++       . -...-..+..++.+
T Consensus       152 ~~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~  219 (340)
T 4fid_A          152 HEYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD  219 (340)
T ss_dssp             EEEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred             EEEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence            3344445 67789999999953           344556678899999999999871       1 11112334444444


Q ss_pred             Hhccc--ccccEEEEEecCCCCC
Q 027618          131 LFGKK--IFDYMIVVFTGGDELE  151 (221)
Q Consensus       131 ~~~~~--~~~~~ivv~tk~D~~~  151 (221)
                      .....  ...|+++++||+|+..
T Consensus       220 i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          220 IMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHHCGGGTTSEEEEEEECHHHHH
T ss_pred             HhhhhccCCCeEEEEEECchhhh
Confidence            43321  2348999999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.59  E-value=6.1e-08  Score=80.47  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc------ccccccCCC----------------------C-cceeeE-E--EEE-E
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTCE-M--QRT-V   64 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~------~~~~~~~~~----------------------~-~t~~~~-~--~~~-~   64 (221)
                      ++..|+++|++|+||||+++.|.+..      +......+.                      + .+..+. .  ..+ .
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            34789999999999999999987642      110000000                      0 011000 0  000 1


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ccEEEE
Q 027618           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV  143 (221)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv  143 (221)
                      + .+..++++||||....   ......++...  .....+|.+++|+++....  .   .+..++. +... . +...+|
T Consensus       178 ~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvV  244 (432)
T 2v3c_C          178 F-KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSII  244 (432)
T ss_dssp             T-SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEE
T ss_pred             h-hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEE
Confidence            2 4567899999998741   23334444322  2233689999999986432  1   2222322 2221 2 348899


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||+|...
T Consensus       245 lnK~D~~~  252 (432)
T 2v3c_C          245 VTKLDGSA  252 (432)
T ss_dssp             EECSSSCS
T ss_pred             EeCCCCcc
Confidence            99999764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.56  E-value=3.1e-07  Score=73.34  Aligned_cols=81  Identities=11%  Similarity=0.081  Sum_probs=52.6

Q ss_pred             EEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-------CCCC-HHHHHHHHHHHH
Q 027618           59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFS-QEEEAALHSLQT  130 (221)
Q Consensus        59 ~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~~~~l~~  130 (221)
                      ....... .+..+.+|||.|..           ..+..+..+++.++++++|++++       +.-+ ..-..++.++.+
T Consensus       158 ~~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~  225 (327)
T 3ohm_A          158 IEYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT  225 (327)
T ss_dssp             EEEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             EEEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence            3344555 67889999999953           23344567889999999999765       2211 122345555555


Q ss_pred             Hhccc--ccccEEEEEecCCCCC
Q 027618          131 LFGKK--IFDYMIVVFTGGDELE  151 (221)
Q Consensus       131 ~~~~~--~~~~~ivv~tk~D~~~  151 (221)
                      .....  ...|+++++||+|+..
T Consensus       226 i~~~~~~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          226 IITYPWFQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             HHTSGGGTTCEEEEEEECHHHHH
T ss_pred             HhhhhccCCceEEEEEECchhhh
Confidence            54322  2348999999999753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.53  E-value=1.2e-06  Score=69.44  Aligned_cols=125  Identities=16%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEEEE---------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQRTV---------------   64 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~~~---------------   64 (221)
                      .++..|+++|++||||||+++.|++...+..+      .......           ....+....               
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999865432211      0000000           000000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHH---HHHHH-hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                       ...+....++||+|....   ......++   +..+. .....++.+++++|+..+.  .....+..+.+..+     .
T Consensus       180 ~~~~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~  249 (304)
T 1rj9_A          180 MKARGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----L  249 (304)
T ss_dssp             HHHHTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----C
T ss_pred             HHhCCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----C
Confidence             002335679999998642   22222332   22232 2335678888899876332  22233333333222     4


Q ss_pred             EEEEEecCCCCC
Q 027618          140 MIVVFTGGDELE  151 (221)
Q Consensus       140 ~ivv~tk~D~~~  151 (221)
                      .++++||.|...
T Consensus       250 t~iivTh~d~~a  261 (304)
T 1rj9_A          250 TGVIVTKLDGTA  261 (304)
T ss_dssp             SEEEEECTTSSC
T ss_pred             cEEEEECCcccc
Confidence            789999999764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.51  E-value=4.2e-08  Score=77.73  Aligned_cols=59  Identities=29%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      +..++++|++|+|||||+|+|+|...+..+...    .  ..|....  .... .  ...++||||+..+
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSL  237 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCcccc
Confidence            478999999999999999999998755444221    1  1222221  1111 1  4689999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.47  E-value=6.3e-07  Score=75.05  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=71.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc------ce-----eeEEEEEE---------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV------TS-----TCEMQRTV---------------   64 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~------t~-----~~~~~~~~---------------   64 (221)
                      ..+..|+|+|++|||||||++.|+|...+..+      ......      ..     ...+....               
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            45689999999999999999999875432211      000000      00     00000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                       ...+..++++||+|....   ...+..++.+.+...    ...++-+++|+|+..+  ......++.+.+.++     .
T Consensus       371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i  440 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L  440 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred             HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence             013456889999998642   233444444433221    1236788999987633  222233333333322     3


Q ss_pred             EEEEEecCCCCCCChhhHHHHh
Q 027618          140 MIVVFTGGDELEDNDETLEDYL  161 (221)
Q Consensus       140 ~ivv~tk~D~~~~~~~~~~~~l  161 (221)
                      ..+|+||.|.... +..+-..+
T Consensus       441 tgvIlTKLD~tak-gG~~lsi~  461 (503)
T 2yhs_A          441 TGITLTKLDGTAK-GGVIFSVA  461 (503)
T ss_dssp             SEEEEECGGGCSC-CTHHHHHH
T ss_pred             CEEEEEcCCCccc-ccHHHHHH
Confidence            5689999997532 33344433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.47  E-value=1.6e-06  Score=69.48  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEEEE---------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQRTV---------------   64 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~~~---------------   64 (221)
                      .++..++++|++||||||+++.|++...+..+      .......           .........               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            45689999999999999999999876432211      0000000           000000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                       ...+..+.++||+|.....   .....++.......  .+|-.++++|+....     ..++.++.. ... .....++
T Consensus       207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~~-----~~~~~~~~~-~~~-~~it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAGN-----AIVEQARQF-NEA-VKIDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGTT-----HHHHHHHHH-HHH-SCCCEEE
T ss_pred             HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHHH-----HHHHHHHHH-HHh-cCCCEEE
Confidence             0023457789999986432   22344444433222  257888899876331     233333332 111 1246899


Q ss_pred             EecCCCCC
Q 027618          144 FTGGDELE  151 (221)
Q Consensus       144 ~tk~D~~~  151 (221)
                      +||.|...
T Consensus       275 lTKlD~~a  282 (328)
T 3e70_C          275 LTKLDADA  282 (328)
T ss_dssp             EECGGGCS
T ss_pred             EeCcCCcc
Confidence            99999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.41  E-value=4.3e-07  Score=71.99  Aligned_cols=58  Identities=26%  Similarity=0.312  Sum_probs=37.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +..++++|++|+|||||+|+|+ ...+..+...    .+  .|....  ...  ......++||||+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~--~~~~g~v~d~pg~~~  228 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIP--FGKGSFVGDTPGFSK  228 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEE--ETTTEEEESSCCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEE--cCCCcEEEECcCcCc
Confidence            4688999999999999999999 6655444211    12  222221  111  123568999999874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.41  E-value=2.7e-06  Score=67.14  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC------cccccccCCCCcce-----------eeEEEE--------------E-Eee
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR------RAFKSRASSSGVTS-----------TCEMQR--------------T-VLK   66 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~~t~-----------~~~~~~--------------~-~~~   66 (221)
                      +..|+++|++|+||||++..|.+.      .+...+........           ......              . ...
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999888733      22211111100000           000000              0 000


Q ss_pred             -CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618           67 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (221)
Q Consensus        67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (221)
                       .+..++++||||..... ..+....++.....  ...+|.+++|+++...  ..   .++.++.. ... .+...+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~---~~~~~~~~-~~~-~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QK---AYDLASKF-NQA-SKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GG---HHHHHHHH-HHT-CTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HH---HHHHHHHH-Hhh-CCCCEEEEe
Confidence             45579999999987410 22233444433211  1256899999998632  22   23333322 221 223779999


Q ss_pred             cCCCCC
Q 027618          146 GGDELE  151 (221)
Q Consensus       146 k~D~~~  151 (221)
                      |+|...
T Consensus       248 k~D~~~  253 (297)
T 1j8m_F          248 KMDGTA  253 (297)
T ss_dssp             CGGGCT
T ss_pred             CCCCCc
Confidence            999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.40  E-value=1.9e-07  Score=70.52  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..++|+++|.+|+|||||++.++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45899999999999999999998653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.38  E-value=6.1e-06  Score=68.48  Aligned_cols=123  Identities=18%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCcc---------e--eeEEEE--------------E-
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGVT---------S--TCEMQR--------------T-   63 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~-------~~~~~~~~~~~~~~t---------~--~~~~~~--------------~-   63 (221)
                      .++..|+++|++|+||||+...|+       |..+......+....         .  ......              + 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            446789999999999999998886       554432221111000         0  000000              0 


Q ss_pred             Eee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618           64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (221)
Q Consensus        64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (221)
                      ... .+..++||||||....   ......++...  .....++.+++|+++.....  .   +..++. |.... +..-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~--~~~~~p~~vllVvda~~g~~--~---~~~~~~-f~~~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQV--HASINPVETLFVVDAMTGQD--A---ANTAKA-FNEAL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHH--HHHSCCSEEEEEEETTBCTT--H---HHHHHH-HHHHS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHH--HHhhcCcceeEEeecchhHH--H---HHHHHH-HhccC-CCeEE
Confidence            011 3567999999997642   22333444333  22346789999999874322  2   222222 22221 12458


Q ss_pred             EEecCCCCC
Q 027618          143 VFTGGDELE  151 (221)
Q Consensus       143 v~tk~D~~~  151 (221)
                      |+||.|...
T Consensus       246 VlnK~D~~~  254 (433)
T 2xxa_A          246 VLTKVDGDA  254 (433)
T ss_dssp             EEECTTSSS
T ss_pred             EEecCCCCc
Confidence            999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.30  E-value=6.1e-07  Score=71.07  Aligned_cols=59  Identities=27%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      +..++++|++|+|||||+|+|+|...+..+...    .+  .|....  ...  ......++|+||+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFAN  233 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCc
Confidence            468899999999999999999998766554221    11  122111  111  223567999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.27  E-value=3.7e-07  Score=73.71  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc-cccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~-~~~~   48 (221)
                      +..++++|++|+|||||+|+|+|... +..+
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence            46899999999999999999999876 5443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.26  E-value=6.5e-07  Score=70.72  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------cCCCCccee-----------eEE-EE----------EEeeC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTST-----------CEM-QR----------TVLKD   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------~~~~~~t~~-----------~~~-~~----------~~~~~   67 (221)
                      .++..|+++|++|+||||++..|++...+..+       ..+...+..           ... ..          ... .
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~  181 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S  181 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence            34679999999999999999888654321111       000000000           000 00          011 3


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +..++++||||....   ......++...+.  ...++.+++|+++....     ..+..+.+.+.  .....-+|+||.
T Consensus       182 ~~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~-----~~~~~~~~~~~--~l~~~giVltk~  249 (296)
T 2px0_A          182 EYDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY-----EDMKHIVKRFS--SVPVNQYIFTKI  249 (296)
T ss_dssp             GSSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH-----HHHHHHTTTTS--SSCCCEEEEECT
T ss_pred             CCCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH-----HHHHHHHHHHh--cCCCCEEEEeCC
Confidence            457999999998742   2222333333321  12357888898876321     12222333333  122456788999


Q ss_pred             CCCCCChhhHHHHhc
Q 027618          148 DELEDNDETLEDYLG  162 (221)
Q Consensus       148 D~~~~~~~~~~~~l~  162 (221)
                      |.... ...+...+.
T Consensus       250 D~~~~-~g~~~~~~~  263 (296)
T 2px0_A          250 DETTS-LGSVFNILA  263 (296)
T ss_dssp             TTCSC-CHHHHHHHH
T ss_pred             Ccccc-hhHHHHHHH
Confidence            97643 233444443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.26  E-value=9.8e-06  Score=64.21  Aligned_cols=125  Identities=17%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEE--------------E--
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQR--------------T--   63 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~--------------~--   63 (221)
                      .++..|+++|++|+||||++..|++......+      .......           .......              .  
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~  181 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  181 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            44578999999999999999888754321110      0000000           0000000              0  


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (221)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (221)
                      ....+..++++||||..   .....+..++.......    ...++.+++|+++.   +.  ...++..+.. ... ...
T Consensus       182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~-~~~-~~i  251 (306)
T 1vma_A          182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIF-KEA-VNV  251 (306)
T ss_dssp             HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHH-HHH-SCC
T ss_pred             HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHH-Hhc-CCC
Confidence            01134568999999963   22344445554433221    23578999999886   22  2233333322 111 223


Q ss_pred             EEEEEecCCCCC
Q 027618          140 MIVVFTGGDELE  151 (221)
Q Consensus       140 ~ivv~tk~D~~~  151 (221)
                      .-+|+||.|...
T Consensus       252 ~gvVlTk~D~~~  263 (306)
T 1vma_A          252 TGIILTKLDGTA  263 (306)
T ss_dssp             CEEEEECGGGCS
T ss_pred             CEEEEeCCCCcc
Confidence            568899999764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.23  E-value=6.7e-06  Score=65.08  Aligned_cols=125  Identities=16%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-------ce----eeEEEE--EE-------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQR--TV-------------   64 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~--~~-------------   64 (221)
                      .++..++++|++||||||+++.|+|...+..+      ......       ..    ...+..  ..             
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~  177 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  177 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence            45689999999999999999999876433221      000000       00    000000  00             


Q ss_pred             --eeCCceEEEEeCCCCCCCCCCchHHHHHHHH---HHHh-hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618           65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (221)
Q Consensus        65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (221)
                        ...+....++||.|+...   ......++.+   .+.. ....++-+++|+|+...+....  .++.+.+..+     
T Consensus       178 ~~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----  247 (302)
T 3b9q_A          178 RGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----  247 (302)
T ss_dssp             HHHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred             HHHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence              001234678999998743   2333333332   2222 2345777788888654443332  2233332212     


Q ss_pred             cEEEEEecCCCCC
Q 027618          139 YMIVVFTGGDELE  151 (221)
Q Consensus       139 ~~ivv~tk~D~~~  151 (221)
                      ..++++||.|...
T Consensus       248 ~t~iiiThlD~~~  260 (302)
T 3b9q_A          248 ITGLILTKLDGSA  260 (302)
T ss_dssp             CCEEEEECCSSCS
T ss_pred             CCEEEEeCCCCCC
Confidence            4678999998764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.23  E-value=6.2e-06  Score=66.73  Aligned_cols=125  Identities=17%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-------ce----eeEEEEEEe--------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRTVL--------------   65 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~~~--------------   65 (221)
                      .++..|+++|++||||||+++.|++...+..+      ......       +.    ...+.....              
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~  234 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  234 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence            45689999999999999999999876432221      000000       00    000000000              


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCchHHHHHHH---HHHH-hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618           66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (221)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (221)
                         ..+....++||.|+...   ......++.   ..+. .....++-+++|+|+...+....  .++.+.+..+     
T Consensus       235 ~~~~~~~d~~lldt~Gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----  304 (359)
T 2og2_A          235 RGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----  304 (359)
T ss_dssp             HHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred             HHHhCCCHHHHHHhcCCChh---hhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----
Confidence               01234678999998753   233333333   2222 23356777788888653443332  2233332212     


Q ss_pred             cEEEEEecCCCCC
Q 027618          139 YMIVVFTGGDELE  151 (221)
Q Consensus       139 ~~ivv~tk~D~~~  151 (221)
                      ..++++||.|...
T Consensus       305 ~t~iiiThlD~~~  317 (359)
T 2og2_A          305 ITGLILTKLDGSA  317 (359)
T ss_dssp             CCEEEEESCTTCS
T ss_pred             CeEEEEecCcccc
Confidence            4779999998754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.12  E-value=2.4e-05  Score=64.82  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC-----------------CcccccccCCCCcceeeEEEE----EEeeCC--ceEE
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG-----------------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVN   72 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~   72 (221)
                      ..+...|+++|+.++|||+|+|.|++                 ...+..+....+.|.-.....    ...+.+  ..++
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            34567888999999999999997652                 122222222223333332221    111122  3589


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 027618           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (221)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~  130 (221)
                      ++||.|+.+.......-..-+.-++..+    ..+||  +....+...+...+..+.+
T Consensus       144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~Iy--N~~~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVY--NLSQNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEE--EEESSCCHHHHHHHHHHHH
T ss_pred             EEeccCCCCcccCccccHHHHHHHHHHh----hheee--cccccCCHHHHHHHHHHHH
Confidence            9999999986554322112222222222    34444  3333566666555555443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.09  E-value=5.9e-05  Score=62.33  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=65.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc------cccCCCCcc-----------eeeEEEE--------------EE-e
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSGVT-----------STCEMQR--------------TV-L   65 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t-----------~~~~~~~--------------~~-~   65 (221)
                      ++..|+++|++|+||||++..|.+.....      .+.......           .......              +. .
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            55789999999999999998876432211      000000000           0000000              00 0


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                       ..+..++++||||....   ......++.......  .++.+++|+++...     ...+..++. |... .....+|+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~-f~~~-l~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARA-FDEK-VGVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHH-HHHH-TCCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHH-HHhc-CCceEEEE
Confidence             13456899999997643   233444444432222  56888999998632     122233332 2221 22366899


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||.|...
T Consensus       245 TKlD~~~  251 (425)
T 2ffh_A          245 TKLDGDA  251 (425)
T ss_dssp             ESGGGCS
T ss_pred             eCcCCcc
Confidence            9998653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.08  E-value=3.6e-05  Score=61.39  Aligned_cols=125  Identities=20%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccc------cccCCCCcc-------e-----eeEEEEE---------------
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSGVT-------S-----TCEMQRT---------------   63 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t-------~-----~~~~~~~---------------   63 (221)
                      .++..|+++|++|+||||++..|.+.....      .+.......       .     ......+               
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~  182 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD  182 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence            456889999999999999998876542211      111110000       0     0000111               


Q ss_pred             ----EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---HHhh-cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 027618           64 ----VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC---IGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK  135 (221)
Q Consensus        64 ----~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~  135 (221)
                          ....+..++++||||...   ..+....++...   +... ...+|.+++|+++...     ...++.++.. ...
T Consensus       183 ~l~~~~~~~yD~VIIDTpg~l~---~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~~-~~~  253 (320)
T 1zu4_A          183 AIKKAKEQNYDLLLIDTAGRLQ---NKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEEF-SKV  253 (320)
T ss_dssp             HHHHHHHTTCSEEEEECCCCGG---GHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHHH-TTT
T ss_pred             HHHHHHhcCCCEEEEcCCCccc---ccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHHH-hhc
Confidence                001355799999999764   122233343332   2211 2347899999988722     2344444443 322


Q ss_pred             ccccEEEEEecCCCCC
Q 027618          136 IFDYMIVVFTGGDELE  151 (221)
Q Consensus       136 ~~~~~ivv~tk~D~~~  151 (221)
                       ....-+|+||.|...
T Consensus       254 -~~i~GvVltk~d~~~  268 (320)
T 1zu4_A          254 -ADVSGIILTKMDSTS  268 (320)
T ss_dssp             -SCCCEEEEECGGGCS
T ss_pred             -CCCcEEEEeCCCCCC
Confidence             223568999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.02  E-value=3.7e-06  Score=64.13  Aligned_cols=30  Identities=27%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            478999999999999999999998765443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.98  E-value=7.6e-07  Score=65.95  Aligned_cols=26  Identities=38%  Similarity=0.760  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .+..|+|+||+|||||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.98  E-value=4.6e-06  Score=63.17  Aligned_cols=30  Identities=23%  Similarity=0.155  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            468899999999999999999998765433

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.95  E-value=6e-06  Score=64.04  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3478999999999999999999998765443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.94  E-value=6.5e-06  Score=63.84  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            3478999999999999999999998765443

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.94  E-value=7.4e-06  Score=62.79  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3478999999999999999999998765443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.94  E-value=6e-06  Score=63.05  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|||||||++.|+|...+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~   59 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMDKVE   59 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence            347899999999999999999999865443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.93  E-value=6.7e-06  Score=63.53  Aligned_cols=31  Identities=26%  Similarity=0.178  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3478999999999999999999998765443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.93  E-value=6.2e-06  Score=63.75  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3478999999999999999999998765443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.93  E-value=6.3e-06  Score=64.32  Aligned_cols=30  Identities=23%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            478899999999999999999998765443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.93  E-value=6.7e-06  Score=63.89  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +..++++|++|||||||++.|+|...+..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~   65 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSH   65 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            47889999999999999999999875543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.92  E-value=5.8e-06  Score=62.11  Aligned_cols=30  Identities=20%  Similarity=0.100  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            467899999999999999999998755433

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.92  E-value=7.1e-06  Score=62.33  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|||||||++.|+|...+..
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~   62 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE   62 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence            347899999999999999999999865433

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.91  E-value=7.1e-06  Score=62.78  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3478999999999999999999998765443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.90  E-value=7.6e-06  Score=62.90  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            478999999999999999999998765443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.90  E-value=4.2e-06  Score=62.10  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +..++++|++|||||||++.|++..
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.89  E-value=8.7e-06  Score=62.26  Aligned_cols=29  Identities=34%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..++++|++|||||||++.|+|...+..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            57899999999999999999998765443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.88  E-value=5.9e-06  Score=61.66  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .++..++++|++|||||||++.|+|..
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345789999999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.88  E-value=8.5e-06  Score=63.74  Aligned_cols=31  Identities=23%  Similarity=0.205  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence            3478899999999999999999998765443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.88  E-value=8.9e-06  Score=63.36  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3478999999999999999999998765443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.88  E-value=1.9e-05  Score=62.27  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc------ccCCCCcce---------eeEEEEE-----------------Ee
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSGVTS---------TCEMQRT-----------------VL   65 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~------~~~~~~~t~---------~~~~~~~-----------------~~   65 (221)
                      ++..++++|++|+||||++..|++......      +........         .......                 ..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999988765432111      000000000         0000000                 00


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (221)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (221)
                       ..+..++++||||....   +.....++.......  .++.+++|+++...     ...++.++.. ... ....-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~-----~~~~~~~~~~-~~~-~~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARAF-DEK-VGVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----HHHHHHHHHH-HHH-TCCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc-----HHHHHHHHHH-hhc-CCCCEEEE
Confidence             03457899999987642   233444444443332  46788899987621     2233333332 211 22356899


Q ss_pred             ecCCCCC
Q 027618          145 TGGDELE  151 (221)
Q Consensus       145 tk~D~~~  151 (221)
                      ||.|...
T Consensus       245 nk~d~~~  251 (295)
T 1ls1_A          245 TKLDGDA  251 (295)
T ss_dssp             ECGGGCS
T ss_pred             ECCCCCc
Confidence            9999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.88  E-value=9.2e-06  Score=63.12  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3478999999999999999999998765443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.88  E-value=6e-05  Score=60.89  Aligned_cols=84  Identities=11%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC--------CHHHHHHHH
Q 027618           55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALH  126 (221)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~  126 (221)
                      |.......+.+ .+..+.+|||+|...+.           ..+..+++.++++|+|+|+++.-        ...-..+..
T Consensus       180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~  247 (353)
T 1cip_A          180 TTGIVETHFTF-KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK  247 (353)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred             eeceEEEEEee-CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence            33344455555 67889999999965421           33446789999999999998421        112234444


Q ss_pred             HHHHHhccc--ccccEEEEEecCCCC
Q 027618          127 SLQTLFGKK--IFDYMIVVFTGGDEL  150 (221)
Q Consensus       127 ~l~~~~~~~--~~~~~ivv~tk~D~~  150 (221)
                      ++.+.....  ...|+++++||.|+.
T Consensus       248 ~~~~i~~~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          248 LFDSICNNKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHHHcCccccCCcEEEEEECcCch
Confidence            454443321  234899999999975

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.86  E-value=9.6e-06  Score=62.54  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +..++++|++|||||||++.|+|...+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   59 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQ   59 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            46889999999999999999999865443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.84  E-value=8.2e-06  Score=58.31  Aligned_cols=30  Identities=23%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|.. +..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence            44789999999999999999999876 4443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.83  E-value=1.2e-05  Score=61.85  Aligned_cols=29  Identities=31%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ++..++++|++|||||||++.|+|...+.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            34688999999999999999999987544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.83  E-value=7.8e-06  Score=59.63  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +++++|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.82  E-value=9.2e-06  Score=59.22  Aligned_cols=25  Identities=28%  Similarity=0.619  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +..++++|++|||||||++.|++..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.81  E-value=1e-05  Score=60.00  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|||||||++.|++.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3468999999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.79  E-value=1.4e-05  Score=62.76  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      ++..++++|++|+|||||++.|+|...+..
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~   92 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE   92 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSCEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            347889999999999999999999865443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.79  E-value=8.8e-06  Score=61.28  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +..++++|++|||||||++.|+|..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4789999999999999999999854

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.79  E-value=1.6e-05  Score=58.93  Aligned_cols=82  Identities=9%  Similarity=-0.018  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ...++++|||+...     .    ...    ..+..+|.+++++..+ ..+......++.+.+........++.+|+|+.
T Consensus        75 ~yD~viiD~~~~~~-----~----~~~----~~l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----V----ITS----AAVMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----H----HHH----HHHHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----H----HHH----HHHHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45789999998653     1    111    2223358999999888 44444467777776542212222568999999


Q ss_pred             CCCCCChhhHHHHhcc
Q 027618          148 DELEDNDETLEDYLGR  163 (221)
Q Consensus       148 D~~~~~~~~~~~~l~~  163 (221)
                      +........+.+++++
T Consensus       141 ~~~~~~~~~~~~~l~~  156 (206)
T 4dzz_A          141 IEMATMLNVLKESIKD  156 (206)
T ss_dssp             CTTEEEEHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHH
Confidence            9543223345555553

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.79  E-value=1.5e-05  Score=61.38  Aligned_cols=25  Identities=32%  Similarity=0.528  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|+|||||++.|+|.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999996

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.78  E-value=1.6e-05  Score=64.28  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            478899999999999999999998766544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.78  E-value=1.1e-05  Score=60.78  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ++..++++||+|||||||++.|+|...
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999998654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.77  E-value=1.7e-05  Score=64.10  Aligned_cols=31  Identities=16%  Similarity=0.119  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||+++|+|...+..+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            3478999999999999999999998765443

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.77  E-value=1.1e-05  Score=63.92  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            3478999999999999999999998765443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.77  E-value=1.6e-05  Score=61.76  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|||||||++.|+|.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3478999999999999999999997

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.75  E-value=1.7e-05  Score=61.36  Aligned_cols=27  Identities=33%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ++..++++|++|||||||++.|+|...
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            347899999999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.75  E-value=1.9e-05  Score=61.17  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|+|||||++.|+|.. +..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            4789999999999999999999987 6544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.74  E-value=2.1e-05  Score=57.55  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..|+++|++||||||+++.|++.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3478999999999999999999986

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.74  E-value=2.2e-05  Score=63.93  Aligned_cols=30  Identities=37%  Similarity=0.422  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence            478899999999999999999998765443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.73  E-value=2.2e-05  Score=63.48  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence            3478899999999999999999998765443

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.72  E-value=2.3e-05  Score=63.44  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence            3478899999999999999999998765443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.72  E-value=2.2e-05  Score=63.32  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            478899999999999999999998765443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.72  E-value=8.3e-06  Score=61.01  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|. .+..+
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence            467899999999999999999998 65444

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.72  E-value=1.6e-05  Score=59.23  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ..++..|+++|++|||||||++.|.+...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34568999999999999999999987653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.70  E-value=2.7e-05  Score=63.27  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            3478899999999999999999998765443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.68  E-value=2.7e-05  Score=56.29  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..++++|++|||||||++.+.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc
Confidence            357899999999999999998654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.68  E-value=2e-05  Score=58.78  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++..|+++|++|||||||++.|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35578999999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.67  E-value=2.8e-05  Score=63.22  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence            468899999999999999999998765544

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.67  E-value=2e-05  Score=63.46  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   55 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence            3478999999999999999999998765443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.66  E-value=2.3e-05  Score=59.95  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=22.5

Q ss_pred             CCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+.++.++.-+.  +..|+++|++|||||||++.|.+.
T Consensus        13 ~~l~~isl~i~~--g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           13 LGTENLYFQSMR--PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ----------CC--SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeecceeccCCC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345555555443  478999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.00035  Score=57.88  Aligned_cols=71  Identities=20%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      +++-|+|.||+|+|||++++++++..                        +..++.++.+.+.+.....  ....+...+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~------------------------~~~~~~v~~s~l~sk~~Ge--se~~ir~~F  267 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATI------------------------GANFIFSPASGIVDKYIGE--SARIIREMF  267 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH------------------------TCEEEEEEGGGTCCSSSSH--HHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh------------------------CCCEEEEehhhhccccchH--HHHHHHHHH
Confidence            45789999999999999999998642                        1223445555555422222  123333333


Q ss_pred             HhhcCCCcEEEEEEeCC
Q 027618           98 GMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~  114 (221)
                      ..+.....+|||+.+++
T Consensus       268 ~~A~~~~P~IifiDEiD  284 (437)
T 4b4t_L          268 AYAKEHEPCIIFMDEVD  284 (437)
T ss_dssp             HHHHHSCSEEEEEECCC
T ss_pred             HHHHhcCCceeeeeccc
Confidence            33333445788877765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.63  E-value=3e-05  Score=57.85  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..|+++|++||||||+++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.62  E-value=2.9e-05  Score=60.12  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      .++..++++|++|||||||+++|++...
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            4557899999999999999999988654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.62  E-value=1.9e-05  Score=63.76  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   60 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3478899999999999999999998765544

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00065  Score=55.55  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++-|+|.||+|+|||++.+++++.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.58  E-value=5e-05  Score=64.75  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++..++++|++|||||||++.|+|...+..+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G   54 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFG   54 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            34578999999999999999999998765544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.57  E-value=3.3e-05  Score=61.05  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|+|||||++.|+|..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            45789999999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.57  E-value=2.6e-05  Score=59.12  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=16.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh-CCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL-GRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~-~~~   43 (221)
                      +..++|+|++||||||+++.|+ +..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4789999999999999999999 764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.57  E-value=0.00018  Score=58.30  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             eEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC--------CHHHHHHHHHHH
Q 027618           58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQ  129 (221)
Q Consensus        58 ~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~  129 (221)
                      .....+.+ .+..+.+|||+|...+           +..+..++..++++|||+++++.-        ...-.....++.
T Consensus       191 i~~~~~~~-~~~~l~i~Dt~Gq~~~-----------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~  258 (362)
T 1zcb_A          191 IHEYDFEI-KNVPFKMVDVGGQRSE-----------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE  258 (362)
T ss_dssp             EEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred             eEEEEeee-CCeEEEEEeccchhhh-----------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence            33344555 6788999999997532           233446788999999999998410        111233334444


Q ss_pred             HHhccc--ccccEEEEEecCCCC
Q 027618          130 TLFGKK--IFDYMIVVFTGGDEL  150 (221)
Q Consensus       130 ~~~~~~--~~~~~ivv~tk~D~~  150 (221)
                      ......  ...|+++++||.|+.
T Consensus       259 ~i~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          259 TIVNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHhcchhhCCCCEEEEEEChhhh
Confidence            433321  234899999999975

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00051  Score=56.53  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++-|+|.||+|+|||++++++++.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            4478999999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.57  E-value=4.8e-05  Score=54.87  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..++..|+++|++||||||+.+.|.+
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            34457899999999999999999865

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.55  E-value=0.00097  Score=60.35  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 027618            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l   39 (221)
                      ..++++.++....  +..++++||+|+||||+++.+
T Consensus       649 ~~v~ndisl~~~~--g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          649 AFIPNDVYFEKDK--QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCEEEEEETTT--BCEEEEECCTTSSHHHHHHHH
T ss_pred             eeecccceeecCC--CeEEEEECCCCCCHHHHHHHH
Confidence            3455555554433  478999999999999999998

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.53  E-value=4.5e-05  Score=60.59  Aligned_cols=29  Identities=21%  Similarity=0.143  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ..++..|+++|++|||||||++.|.|...
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            45668999999999999999999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.53  E-value=6.2e-05  Score=64.25  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++..++++|++|||||||++.|+|...+..+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G   76 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC   76 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            56689999999999999999999998765444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.52  E-value=6e-05  Score=57.65  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh---CCcccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL---GRRAFK   46 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~---~~~~~~   46 (221)
                      +..|+++|++||||||+++.|+   |...+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            4689999999999999999999   876543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.52  E-value=5e-05  Score=56.21  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +..|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.001  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++-|+|.||+|+|||++++++++.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.52  E-value=3.7e-05  Score=56.55  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      .+++++|++|+|||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999998654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.50  E-value=4.2e-05  Score=62.55  Aligned_cols=27  Identities=37%  Similarity=0.425  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ++..++++|++|||||||++.|+|...
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            347899999999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.49  E-value=7.2e-05  Score=64.67  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++..++++|++|+|||||++.|+|...+..+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G  132 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG  132 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            45689999999999999999999998766554

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.48  E-value=0.00022  Score=58.42  Aligned_cols=78  Identities=15%  Similarity=0.144  Sum_probs=51.0

Q ss_pred             EEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC----------CCCHHHHHHHHHHH
Q 027618           60 MQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS----------RFSQEEEAALHSLQ  129 (221)
Q Consensus        60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~~~~~~~~~~~l~  129 (221)
                      ...+.+ .+..+.+|||+|...+.           ..+..+++.++++|+|+++++          .-+.  ..+..++.
T Consensus       209 ~~~~~~-~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~~~  274 (402)
T 1azs_C          209 ETKFQV-DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNLFK  274 (402)
T ss_dssp             EEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHHHH
T ss_pred             EEEeec-CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHHHH
Confidence            344455 67889999999975422           334467889999999999985          2222  23344444


Q ss_pred             HHhcc--cccccEEEEEecCCCCC
Q 027618          130 TLFGK--KIFDYMIVVFTGGDELE  151 (221)
Q Consensus       130 ~~~~~--~~~~~~ivv~tk~D~~~  151 (221)
                      +....  ....|+++|+||+|+..
T Consensus       275 ~i~~~~~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          275 SIWNNRWLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             HHHTCTTCSSCCEEEEEECHHHHH
T ss_pred             HHHhcccCCCCeEEEEEEChhhhh
Confidence            44322  12348999999999753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.48  E-value=2e-05  Score=57.74  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +-|+|+||+|||||||++.|+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            34889999999999999999754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00067  Score=56.36  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++-|+|.||+|+|||+|.+++++.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4578999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.46  E-value=6.6e-05  Score=60.89  Aligned_cols=28  Identities=32%  Similarity=0.574  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      ++..++++|++|+|||||+++|++...+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3468999999999999999999997643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.46  E-value=6.2e-05  Score=55.67  Aligned_cols=26  Identities=27%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++..|+++|++||||||+++.|.+.
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.43  E-value=6e-05  Score=55.12  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..++++|++||||||+++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.43  E-value=9.7e-05  Score=56.79  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh---CCcccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL---GRRAFK   46 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~---~~~~~~   46 (221)
                      .++..|+++|++||||||+++.|.   |...+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d   57 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD   57 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence            345789999999999999999998   766543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.43  E-value=9.5e-05  Score=63.95  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++..++++|++|+|||||++.|+|...+..+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G  146 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC  146 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence            56689999999999999999999998765544

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.41  E-value=9.6e-05  Score=63.92  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            3579999999999999999999998765443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.41  E-value=8.7e-05  Score=58.82  Aligned_cols=28  Identities=18%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ...+..|+++|++|||||||++.|.+..
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3556899999999999999999998753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.40  E-value=7.5e-05  Score=56.14  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|||||||++.|++..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998743

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.40  E-value=0.0001  Score=63.60  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            3478999999999999999999998765443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.39  E-value=7.1e-05  Score=59.94  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      +..++++|++|+|||||+++|+|...+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            457899999999999999999987643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.39  E-value=0.00011  Score=63.46  Aligned_cols=31  Identities=39%  Similarity=0.474  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  398 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG  398 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3478999999999999999999998765443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.38  E-value=0.0014  Score=59.25  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..++++.++..+.  +..++++||+|+||||+++.+.+
T Consensus       659 ~~~V~ndvsl~~~~--g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          659 DQYVPNNTDLSEDS--ERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SSSCCEEEEECTTS--CCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CceecccccccCCC--CeEEEEECCCCCchHHHHHHHHH
Confidence            35567777666543  37899999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.35  E-value=6.3e-05  Score=62.88  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      .+.+++++|++|||||||++.|+|...+..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~  166 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN  166 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence            457899999999999999999999865433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.34  E-value=0.00011  Score=54.31  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .++..|+++|++||||||+.+.|.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999987654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.34  E-value=0.00014  Score=62.03  Aligned_cols=31  Identities=16%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G  323 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEG  323 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4568899999999999999999998765544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.34  E-value=0.0001  Score=59.57  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ...++++|++|||||||+++|++...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            45899999999999999999987643

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.33  E-value=0.0023  Score=48.88  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....|++.|++|+|||++++++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3466899999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.32  E-value=0.00016  Score=61.75  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G  341 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG  341 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            4578999999999999999999998765544

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.31  E-value=9e-05  Score=63.84  Aligned_cols=31  Identities=35%  Similarity=0.309  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            3578999999999999999999998765443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.31  E-value=9.4e-05  Score=53.13  Aligned_cols=23  Identities=39%  Similarity=0.702  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.31  E-value=0.00013  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..|+++|++||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00069  Score=56.06  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++-|+|.||||+|||++++++++.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.30  E-value=0.00017  Score=62.42  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G  411 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG  411 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4578999999999999999999998765544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.29  E-value=0.00012  Score=59.58  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      .++..++++|++|+||||++++|++...
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3457899999999999999999988643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.28  E-value=0.00016  Score=57.54  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+..|+++|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            455689999999999999999998654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.27  E-value=0.00013  Score=61.84  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      +..++++|+|||||||++++|++...
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45699999999999999999998754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.26  E-value=0.00015  Score=54.88  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++..|++.|++||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45689999999999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.26  E-value=0.00011  Score=53.23  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      +..++++|++|+|||||++++++...
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            47889999999999999999987653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.25  E-value=0.00028  Score=52.29  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+..|+++|++|+||||+.+.|.+.
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999999876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.25  E-value=0.00014  Score=62.78  Aligned_cols=31  Identities=29%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G  398 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERG  398 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence            3578999999999999999999998765443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.23  E-value=0.00016  Score=59.75  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      +...++++|++|+|||||+++|++...
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            446899999999999999999988653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.22  E-value=0.00012  Score=51.67  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ++..++++|++|+|||+|++++++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999987643

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.22  E-value=0.0017  Score=50.43  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+++.|++|+|||++++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999999999999754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.22  E-value=0.00013  Score=59.24  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      ..+++++|++|+|||||++.|+|...+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999987544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.21  E-value=6.9e-05  Score=54.16  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ..++++|++|+|||||++.|++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5789999999999999999987654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.00026  Score=61.21  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..++++|++|+|||||++.|+|...+..+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            56899999999999999999998776554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.18  E-value=0.00076  Score=53.17  Aligned_cols=97  Identities=10%  Similarity=-0.043  Sum_probs=59.4

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      ..+.+|||  ...+..-           ...+++.+|++++|+|++++. +... ..|+..+..   .  ..|+++|+||
T Consensus        63 ~~~~iwD~--qer~~~l-----------~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~--~~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKNLL-----------TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---N--ELETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSCEE-----------TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---T--TCEEEEEECC
T ss_pred             CeEEEEEE--cccccee-----------eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---C--CCCEEEEEeH
Confidence            37899999  3332211           124678899999999998654 3332 445554443   1  3479999999


Q ss_pred             CCCCCCChhh---HHHHhcccC--CchhhhhHHHHHhHHHHHHh
Q 027618          147 GDELEDNDET---LEDYLGREC--PKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       147 ~D~~~~~~~~---~~~~l~~~~--~~~l~~~~~~~~~~~~~~~~  185 (221)
                      +|+..  ...   ..+++....  ...+..|+....++.+.+..
T Consensus       125 ~DL~~--~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~  166 (301)
T 1u0l_A          125 MDLYD--EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY  166 (301)
T ss_dssp             GGGCC--HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred             HHcCC--chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH
Confidence            99875  322   334443222  34555666666666666654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.18  E-value=0.00016  Score=58.30  Aligned_cols=29  Identities=17%  Similarity=0.123  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      .++-+++++|++|+|||||++.|+|...+
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34578999999999999999999987643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.16  E-value=0.00014  Score=60.89  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      ..++++|++|||||||+++|+|...+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~   56 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPD   56 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            678999999999999999998865543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.16  E-value=0.00026  Score=52.36  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.16  E-value=0.00025  Score=52.43  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+..|+++|++|+||||+++.|.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44588999999999999999998763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.00031  Score=51.82  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=21.4

Q ss_pred             CCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618            8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus         8 ~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++.++..+  +...|+++|++||||||+.+.|...
T Consensus        16 ~~~~~~~~--~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           16 ENLYFQSN--AMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceeEecC--CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34444433  3478999999999999999998743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.12  E-value=0.00031  Score=55.13  Aligned_cols=29  Identities=24%  Similarity=0.271  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ....+..|+++|++|||||||++.|.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34566899999999999999999987654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.12  E-value=0.00023  Score=53.43  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.09  E-value=0.00019  Score=65.05  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~   47 (221)
                      +.+++++|++|+|||||++.|+|...+..
T Consensus       699 GeivaIiGpNGSGKSTLLklLaGll~P~s  727 (986)
T 2iw3_A          699 SSRIAVIGPNGAGKSTLINVLTGELLPTS  727 (986)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            46899999999999999999999865543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.09  E-value=0.0003  Score=50.92  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+++|++|+||||++.+|.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999998653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.06  E-value=0.001  Score=53.73  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=44.9

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-------CC-CCHHHHHHHHHHHHHhcc--ccc
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SR-FSQEEEAALHSLQTLFGK--KIF  137 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~-~~~~~~~~~~~l~~~~~~--~~~  137 (221)
                      ...+.+|||+|...+.           .....+++.++++++|++++       +. -...-..+..++.+....  ...
T Consensus       182 ~v~l~iwDtaGQe~~r-----------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNER-----------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTTGG-----------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchhhh-----------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            3578999999976532           23346788999999999986       11 111123334444443321  123


Q ss_pred             ccEEEEEecCCCC
Q 027618          138 DYMIVVFTGGDEL  150 (221)
Q Consensus       138 ~~~ivv~tk~D~~  150 (221)
                      .|+++|+||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            4899999999975

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.03  E-value=0.00086  Score=49.89  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=45.0

Q ss_pred             CceEEEEeCCCC-CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEe
Q 027618           68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT  145 (221)
Q Consensus        68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~t  145 (221)
                      ...++++|||+. ...             .....+..+|.+++++..+ ..+... ...++.+.+..    ..++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~-------------~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE-------------DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS-------------HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH-------------HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence            457899999986 431             1112334568999998776 322222 44445554421    235789999


Q ss_pred             cCCCCC-CChhhHHHHhcc
Q 027618          146 GGDELE-DNDETLEDYLGR  163 (221)
Q Consensus       146 k~D~~~-~~~~~~~~~l~~  163 (221)
                      +.+... .....+.+++++
T Consensus       129 ~~~~~~~~~~~~~~~~l~~  147 (209)
T 3cwq_A          129 IIPPYPSKDGDEARQLLTT  147 (209)
T ss_dssp             SBCCTTSCHHHHHHHHHHH
T ss_pred             ecCCccchHHHHHHHHHHH
Confidence            998654 223445555553

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.02  E-value=0.00041  Score=50.18  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++++|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            67899999999999999999865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.02  E-value=0.0003  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+|+++|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.02  E-value=0.00026  Score=58.81  Aligned_cols=29  Identities=17%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      .++-+++++|++|+|||||++.|+|...+
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            44578999999999999999999987643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.02  E-value=0.00026  Score=56.36  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ...++++|++|||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4678999999999999999999764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.00  E-value=0.00034  Score=62.32  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +..+.++.++.   .++..++++|++|+||||+++.+.+..
T Consensus       594 ~~~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          594 EPFIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SCCCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             Cceeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            45567777776   345789999999999999999988754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.99  E-value=0.00058  Score=50.60  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+..|++.|.+||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.98  E-value=0.0073  Score=47.97  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +...|+|.|++|+|||++++++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            4478999999999999999999854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.97  E-value=0.00047  Score=49.19  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l   39 (221)
                      ..|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.97  E-value=0.00031  Score=54.64  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++++|++|+|||||+++|++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.96  E-value=0.00054  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.96  E-value=0.00062  Score=47.91  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ...+++|++|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999975

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.95  E-value=0.0005  Score=49.06  Aligned_cols=22  Identities=18%  Similarity=0.145  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.94  E-value=0.0049  Score=54.89  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+++-|+|.||+|+|||+|.+++++...                        ..++.++.+.+....  ..+....++..
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk~--~gese~~lr~l  289 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSKL--AGESESNLRKA  289 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSSC--TTHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhccc--chHHHHHHHHH
Confidence            4457899999999999999999986531                        122344544433211  11223445555


Q ss_pred             HHhhcCCCcEEEEEEeCC
Q 027618           97 IGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~  114 (221)
                      +..+.....+|||+-+++
T Consensus       290 F~~A~~~~PsIIfIDEiD  307 (806)
T 3cf2_A          290 FEEAEKNAPAIIFIDELD  307 (806)
T ss_dssp             HHHHTTSCSEEEEEESGG
T ss_pred             HHHHHHcCCeEEEEehhc
Confidence            555555667888887765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.94  E-value=0.00044  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|+|||||++.|++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999998854

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.00045  Score=50.97  Aligned_cols=24  Identities=33%  Similarity=0.648  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|+++|++||||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.93  E-value=0.0072  Score=47.13  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+++.|++|+|||++++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            478999999999999999999764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.92  E-value=0.00037  Score=65.52  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+|+++|++|||||||++.|++...+..+
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence            3579999999999999999999998665443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.90  E-value=0.00062  Score=55.22  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~   40 (221)
                      ..+++|+|||||||++++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999987

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.90  E-value=0.00062  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +..|+++|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.89  E-value=0.00066  Score=48.85  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.87  E-value=0.00075  Score=52.85  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...+..|++.|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.86  E-value=0.00061  Score=63.91  Aligned_cols=31  Identities=32%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+++++|++|||||||++.|+|...+..+
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            3478999999999999999999998765433

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.85  E-value=0.00046  Score=52.81  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++++|++|+|||||+++|++.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.85  E-value=0.0008  Score=49.41  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ......|+++|++||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.85  E-value=0.00056  Score=53.66  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      .++..++++|++|+|||||++.|++...
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3457889999999999999999876543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.84  E-value=0.00093  Score=48.56  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999988654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.84  E-value=0.001  Score=48.98  Aligned_cols=26  Identities=15%  Similarity=0.406  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ......|++.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999988863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.84  E-value=0.00079  Score=48.41  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...++++|++|+|||||++.|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.83  E-value=0.00053  Score=60.78  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..+.++.++.     +..++++|++|+||||+++.+.+..
T Consensus       566 ~~vl~disl~-----g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          566 EFVPNDLEMA-----HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CCCCEEEEES-----SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEeeeccCC-----CcEEEEECCCCCChHHHHHHHHhhh
Confidence            3455666665     5789999999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.82  E-value=0.00085  Score=48.85  Aligned_cols=23  Identities=13%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.82  E-value=0.0011  Score=48.09  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+..|+++|.+|+||||+.+.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.82  E-value=0.00083  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988854

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.81  E-value=0.00073  Score=63.56  Aligned_cols=31  Identities=32%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|+|||||++.|+|...+..+
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence            3478999999999999999999998765444

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.81  E-value=0.0008  Score=48.84  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.79  E-value=6.2e-05  Score=56.95  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFK   46 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~   46 (221)
                      .++++|++|||||||+++|++...+.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~   54 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccC
Confidence            45789999999999999999876543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.77  E-value=0.00089  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999853

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.77  E-value=0.001  Score=48.00  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..|+++|.+||||||+.+.|.+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.76  E-value=0.00063  Score=54.41  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..++++|++|+|||||++.|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            568999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.74  E-value=0.00067  Score=61.49  Aligned_cols=25  Identities=28%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++.+++++|++|+|||||++.|+|.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468899999999999999999953

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.72  E-value=0.0077  Score=49.07  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|+|.|++|+|||+++.+|+..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999999999643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.71  E-value=0.00082  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|+|||||++.|++.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3468999999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.71  E-value=0.0011  Score=48.25  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998853

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.70  E-value=0.00069  Score=52.62  Aligned_cols=21  Identities=38%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++++|++|+|||||+++|++.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.70  E-value=0.0012  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +..|++.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.69  E-value=0.0012  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.68  E-value=0.0014  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+..|+++|++|+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.68  E-value=0.00096  Score=49.60  Aligned_cols=24  Identities=13%  Similarity=-0.031  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..++++|++|+|||||+..+++
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.68  E-value=0.0011  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0013  Score=48.59  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.67  E-value=0.0011  Score=62.23  Aligned_cols=31  Identities=26%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++.+++++|++|+|||||++.|+|...+..+
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            4578999999999999999999998765443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.67  E-value=0.0011  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|++.|++||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.67  E-value=0.00092  Score=50.50  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..++++|++|+|||||+..|++.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4468899999999999999999874

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.66  E-value=0.0054  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++.|++|+||||+++.|++.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998873

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.65  E-value=0.0014  Score=49.95  Aligned_cols=25  Identities=16%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++.+|+++|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999998863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.63  E-value=0.00029  Score=57.97  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++ .++|+|+||+|||||+++|.+
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHH
Confidence            44 889999999999999988743

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.62  E-value=0.019  Score=42.11  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+++.|++|+|||+++..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.62  E-value=0.0012  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.61  E-value=0.0012  Score=47.59  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ...|+++|.+|+||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4678999999999999999886

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.60  E-value=0.012  Score=45.33  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....+++.|++|+|||+++.++...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4478899999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.59  E-value=0.001  Score=50.95  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...+..|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.59  E-value=0.0015  Score=48.38  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.58  E-value=0.00095  Score=51.19  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|+++|++|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.58  E-value=0.0016  Score=48.48  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.57  E-value=0.0014  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.56  E-value=0.0017  Score=48.04  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ...+++|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            466889999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.55  E-value=0.0015  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ...|+++|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999886

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.53  E-value=0.0014  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998853

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.53  E-value=0.0023  Score=47.90  Aligned_cols=25  Identities=16%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+.|+++|++||||+|....|+..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778999999999999888643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.52  E-value=0.0016  Score=47.55  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988854

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.52  E-value=0.0022  Score=46.54  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...|++.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998853

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.50  E-value=0.0017  Score=49.83  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+++|++||||||+.+.|..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3688999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.50  E-value=0.0045  Score=49.43  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..|+|+|++|+|||||...|....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            578999999999999999987654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.49  E-value=0.02  Score=48.04  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .-|+|+|++|+|||+|++++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.49  E-value=0.0015  Score=46.97  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      .|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.45  E-value=0.0039  Score=48.60  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      .....|++.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            445789999999999999999886

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.44  E-value=0.002  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...+++|++|+||||++.+|+.
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.44  E-value=0.0014  Score=50.86  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++..++++|++|+|||||+..+++
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3557899999999999999998876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.44  E-value=0.001  Score=58.25  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +..++++|++|||||||++.|+
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            4688999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.44  E-value=0.0023  Score=46.05  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.44  E-value=0.0017  Score=49.65  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++++|++|+|||+++++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.43  E-value=0.0023  Score=47.51  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..|+++|.+|+||||+.+.|.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.41  E-value=0.0025  Score=48.13  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+..|++.|++||||||+++.|...
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35688999999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.40  E-value=0.0022  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .....|++.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.40  E-value=0.00078  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .|++.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.37  E-value=0.0024  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +..|++.|++|+||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.37  E-value=0.0025  Score=49.02  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.36  E-value=0.0018  Score=53.60  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      +..++++|++|+|||||+++|++...
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            46789999999999999999876443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.34  E-value=0.0025  Score=45.28  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.34  E-value=0.0021  Score=58.80  Aligned_cols=40  Identities=23%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             CCCCCCcccCCCC-----CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618            4 SAIDDDWELTSPS-----NGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus         4 ~~~~~~~~~~~~~-----~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      ..+.++.++....     ..+..++++||+|+||||+++.+ |...
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4456666664432     23578999999999999999998 6543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.33  E-value=0.002  Score=46.57  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.33  E-value=0.0018  Score=52.30  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+++|++|+||||++++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            789999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.33  E-value=0.0024  Score=47.45  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|+|||||+|....|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999888643

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.32  E-value=0.0023  Score=47.59  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.31  E-value=0.0018  Score=46.71  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=16.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999853

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.30  E-value=0.0012  Score=56.36  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRA   44 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~   44 (221)
                      .++..|+|+|++|||||||+++|.+...
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            3557899999999999999999987643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.29  E-value=0.0023  Score=45.66  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988853

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.29  E-value=0.0031  Score=47.60  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .....|+|+|.+|+||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.29  E-value=0.003  Score=47.76  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+..|+++|++|+||||+.+.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.29  E-value=0.0026  Score=46.20  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.24  E-value=0.0023  Score=51.56  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..+.++|++|+|||||+..+++..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45788999999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.23  E-value=0.0023  Score=50.84  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+++|++|+|||||+.+|..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            778999999999999999873

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.23  E-value=0.0031  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....+++.|++|+|||+++..+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.23  E-value=0.0031  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..+++.|++|+|||+|+.+++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999987543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.22  E-value=0.0043  Score=48.65  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .+...++++|++|+|||+++++|.+..
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            334579999999999999999987653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.20  E-value=0.0022  Score=54.57  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l   39 (221)
                      ++..++++|++|||||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4578999999999999999994

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.20  E-value=0.0095  Score=53.67  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..++|+|++|+|||+++..++...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            457999999999999999988654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.19  E-value=0.0031  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.18  E-value=0.003  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998853

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.15  E-value=0.0041  Score=45.80  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +..|+++|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999888754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.13  E-value=0.0045  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +..|+++||||+|||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            467889999999999999888643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.12  E-value=0.011  Score=52.50  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...++|+|++|+|||+++..+...
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.12  E-value=0.0029  Score=45.35  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...+++.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999988654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.10  E-value=0.0057  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..+++.|++|+|||++..+|+..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3466778899999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.09  E-value=0.0038  Score=45.79  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ....|+++|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.09  E-value=0.004  Score=48.95  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....|++.|++|+|||+++++|.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            3467999999999999999999764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.07  E-value=0.0044  Score=48.96  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|+++||||+|||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            357889999999999999988644

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.06  E-value=0.0042  Score=44.17  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.03  E-value=0.0023  Score=50.11  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ....|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.00  E-value=0.0054  Score=48.08  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .....++|.|++|+|||++++++...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999887654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.97  E-value=0.0035  Score=54.94  Aligned_cols=19  Identities=42%  Similarity=0.634  Sum_probs=17.0

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATG   36 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSsli   36 (221)
                      ++..++++|++|||||||+
T Consensus        43 ~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           43 RGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHh
Confidence            3478999999999999996

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.96  E-value=0.0048  Score=50.05  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ...+++|+||+||||++.+|.
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            566899999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.95  E-value=0.0049  Score=48.21  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.94  E-value=0.0064  Score=50.14  Aligned_cols=26  Identities=35%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .....|+++|.+||||||+.+.|...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34578899999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.93  E-value=0.19  Score=41.79  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++|.|++|+||||+++.|...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.92  E-value=0.0052  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ++..++++|++|+|||||+..++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34678999999999999976654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.89  E-value=0.004  Score=53.19  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|+|||||+++|.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            45789999999999999999987654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.86  E-value=0.0057  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|+++|++|+||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999888643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.85  E-value=0.0056  Score=44.97  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.84  E-value=0.0056  Score=48.97  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|+++|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            57899999999999999887643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.81  E-value=0.006  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...|++.|+||+|||||...|..
T Consensus         2 ~~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHH
Confidence            36789999999999999988764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.80  E-value=0.0061  Score=42.36  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..|++.|++|+|||++..+|...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.78  E-value=0.0065  Score=46.09  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=22.0

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..+...+..|++.|.+|+||||+++.|...
T Consensus        19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~   50 (236)
T 3lv8_A           19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVET   50 (236)
T ss_dssp             -------CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred             ccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44555556788999999999999999998643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.70  E-value=0.038  Score=46.49  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|+|.|++|+|||+++++|...
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999999643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.64  E-value=0.0076  Score=44.89  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+++.|++|+|||+++..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.63  E-value=0.0071  Score=48.66  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ....+++.|++|+|||||++.+++..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999988643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.61  E-value=0.0061  Score=45.13  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+++.||+|+||||++.+|+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999998887653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.61  E-value=0.0092  Score=44.48  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|++.|+.||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	1e-25
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-12
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.002
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	0.002
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.003

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 98.3 bits (244), Expect = 1e-25
 Identities = 42/214 (19%), Positives = 80/214 (37%), Gaps = 8/214 (3%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
            L        T++++G+ G GKS+T NSI+G R        S       + R+    G  
Sbjct: 24  NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFT 81

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQ 129
           +N+IDTPGL +    ++     I     +    I  +L V  +   R    ++    ++ 
Sbjct: 82  LNIIDTPGLIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAIT 139

Query: 130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYL---GRECPKPLKKGATKLRDQQFEVDSL 186
             FGK I++  IV  T       +    +++         + ++ GA+  +D Q     +
Sbjct: 140 DSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPV 199

Query: 187 KGYSKREISELKEQMHKSYEDQLKRITEMVPVMI 220
                       +   K   + +  I  +V  + 
Sbjct: 200 VLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTIT 233

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 26/213 (12%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQ 69
            L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +  
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 70  VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129
            V   D PG+   +   +   +++                +    +RF + +     ++ 
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAIS 159

Query: 130 TLFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKGATKLRDQ 179
               K+       V T  D    N+          E +   +   C    ++    + + 
Sbjct: 160 M-MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE--NGIAEP 212

Query: 180 QFEVDSLKGYSKREISELKEQMHKSYEDQLKRI 212
              + S K     +   L +++        +  
Sbjct: 213 PIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 245

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVG    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           + +     +G + ++ I      I  V+ +  +  R   ++   ++   + +  ++ +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
            ++     ++ +  E LE +  +                 F + ++       + EL  +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD----------YPVFPISAVTR---EGLRELLFE 166

Query: 201 MHKSYED 207
           +    E+
Sbjct: 167 VANQLEN 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 20/182 (10%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           V LVG    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
            ++  + +G E ++ I   +  ++ +              +        L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQM 201
            V               D L  E  K L     +       V +L G     +  LKE +
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTGAG---LPALKEAL 163

Query: 202 HK 203
           H 
Sbjct: 164 HA 165

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 19/191 (9%), Positives = 58/191 (30%), Gaps = 11/191 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++  GR+  GKS     + G++  + +             +                  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY- 139
           +     +      ++      D    V+   +      + E+     +   F + + +  
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 140 --MIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISEL 197
              IV     D++++  E +     +      +   +++      + +  G +   I  L
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEK-----FEVPLSEIDKVFIPISAKFGDN---IERL 173

Query: 198 KEQMHKSYEDQ 208
           K ++ +   ++
Sbjct: 174 KNRIFEVIRER 184

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 19/189 (10%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL- 79
            V +VGR   GKS   N+IL +   ++  S    T+   +   V  DG+    +DT GL 
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
                    V K     +  + +    V++V       +++++     ++      +  +
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 140 MIVVFTGGDELEDND--ETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISEL 197
                    E   ++  +   + L      PL               + KG++   I  +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPL-----------IFTSADKGWN---IDRM 173

Query: 198 KEQMHKSYE 206
            + M+ +Y 
Sbjct: 174 IDAMNLAYA 182

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 7   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQR 62
            D      P   ++T V  G++G GKS+  N+I      +    S     G  +T  ++ 
Sbjct: 85  QDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL 144

Query: 63  TVLKDGQVVNVIDTPGL 79
                G    V DTPG 
Sbjct: 145 IHTSGGL---VADTPGF 158

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 30/209 (14%)

Query: 22  VVLVGRTGNGKSATGNSIL---GRRAFKSRASSSGVTSTCEMQR-----------TVLKD 67
           V  +G   +GK+    ++                G       +R                
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 68  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
            +  + +D PG  D+        K ++       DG  A+LVV +      Q  E  L +
Sbjct: 66  KRHYSHVDCPGHADYI-------KNMITGAAQM-DG--AILVVSAADGPMPQTREHILLA 115

Query: 128 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLK 187
            Q   G       +      D+ E  D    +   R+                    +L 
Sbjct: 116 RQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEV--RDLLNQY--EFPGDEVPVIRGSALL 169

Query: 188 GYSKREISELKEQMHKSYEDQLKRITEMV 216
              +   +    +    + D++  + + +
Sbjct: 170 ALEQMHRNPKTRRGENEWVDKIWELLDAI 198

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.79
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.76
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.75
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.73
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.73
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.72
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.72
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.72
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.71
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.71
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.71
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.7
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.69
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.68
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.68
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.68
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.64
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.63
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.63
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.62
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.61
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.59
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.55
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.54
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.53
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.53
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.51
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.49
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.46
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.44
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.41
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.33
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.3
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.22
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.18
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.14
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.13
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.11
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.06
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.94
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.82
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.82
d1okkd2	207	GTPase domain of the signal recognition particle r	98.81
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.8
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.77
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.66
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.54
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.34
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.1
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.08
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.03
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.99
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.99
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.93
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.93
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.92
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.9
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.9
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.9
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.86
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.82
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.75
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.66
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.65
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.57
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.56
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.56
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.44
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.42
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.41
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.37
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.35
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.33
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.31
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.31
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.28
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.27
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.27
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.27
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.25
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.23
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.22
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.22
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.2
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.16
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.16
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.16
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.15
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.13
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.12
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.1
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.07
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.06
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.01
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.01
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.93
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.88
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.88
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.87
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.82
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.79
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.76
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.74
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.73
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.67
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.64
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.63
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.6
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.59
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.52
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.5
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.47
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.47
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.45
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.44
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.43
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.42
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.34
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.33
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.25
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.24
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.24
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.22
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.21
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.19
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.18
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.17
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.14
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.05
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.05
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.04
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.0
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.98
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.97
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.87
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.86
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.74
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.49
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.32
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.31
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.28
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.23
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.18
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.1
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.02
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.76
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.43
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.41
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.4
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.21
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.15
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.13
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.97
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.77
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.71
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.58
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.52
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.49
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.16
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.05
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.81
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.8
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.75
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.67
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.59
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.29
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.71
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.52
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.06
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.8
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	88.92
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.63
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.91
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.85
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.79
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.81
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.1
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.44
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.1
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.6
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.41
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.24
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.0
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.36
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.07

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.91  E-value=7.3e-24  Score=163.33  Aligned_cols=143  Identities=23%  Similarity=0.329  Sum_probs=115.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+|+|.+|+|||||+|+|+|...+.... ..+.|..+......+ .+..+.|+||||+.+.....+.....+..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            456899999999999999999999998876653 446777777777777 889999999999998665555544444444


Q ss_pred             HHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618           97 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (221)
                      .  ....+|+++||+.++. +++..+...++.+.+.||..++.+++||+||+|...+++..+++|+.+
T Consensus       108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~  173 (257)
T d1h65a_         108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  173 (257)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh
Confidence            2  3356799999998863 699999999999999999999999999999999987556677777763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.1e-20  Score=137.72  Aligned_cols=124  Identities=23%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..|+++|++|+|||||+|+|+|....... ...+.|.......... .+..+.++||||+......   ....+...+..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~---~~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDA---LGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSH---HHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeecccccccccccc---cchhccccccc
Confidence            47999999999999999999998754333 2334555555555555 7889999999999864332   33444455556


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ++..+|++++|+|++++++..+..+++.+++...   ..|+++|+||+|+..
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~---~~piilv~NK~Dl~~  129 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAK  129 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred             ccccccceeeeechhhhhcccccchhhheecccc---chhhhhhhccccccc
Confidence            6788999999999998898888888887766433   248999999999876

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.6e-19  Score=130.47  Aligned_cols=156  Identities=17%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+++|.+|||||||+|+|+|.......  ..+.|............+..+.++||||+...............    ..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l----~~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----RH   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHH----HH
Confidence            3899999999999999999998764332  33445555554444436778999999998763322222222222    23


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH---HHHhcccCCchhhhhHHHHH
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL---EDYLGRECPKPLKKGATKLR  177 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~  177 (221)
                      ...+++++++++...........+..++..........|+++|+||+|+..  ...+   .+.+.+.....+..|+....
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~iSA~tg~  154 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE--EEAVKALADALAREGLAVLPVSALTGA  154 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC--HHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh--HHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence            456689999999874433333444444443322233458999999999987  3333   33333333344445555555


Q ss_pred             hHHHHHH
Q 027618          178 DQQFEVD  184 (221)
Q Consensus       178 ~~~~~~~  184 (221)
                      ++.++.+
T Consensus       155 gid~L~~  161 (180)
T d1udxa2         155 GLPALKE  161 (180)
T ss_dssp             THHHHHH
T ss_pred             CHHHHHH
Confidence            5544444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=7.3e-18  Score=122.90  Aligned_cols=119  Identities=21%  Similarity=0.226  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH----HHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VGKEIVKC   96 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~----~~~~~~~~   96 (221)
                      +|+++|++|||||||+|+|+|.....+  ...+.|....  .+.+   ..+.++||||+.........    +...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~--~~~g~T~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKII--EIEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCE--EEEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--CCCCEeeccc--cccc---ccceecccCCceeccccccccccccchhhhhh
Confidence            689999999999999999999875322  2334454432  2333   34678999998765544433    33444555


Q ss_pred             HHhhcCCCcEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRS-----------RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +....+.+|++++|+|+..           .....+...++.+++.     ..|+++|+||+|+..
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~  135 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIK  135 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCS
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhh
Confidence            5666778899999999752           3445555666666553     347999999999886

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.5e-18  Score=121.61  Aligned_cols=155  Identities=19%  Similarity=0.237  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|||||||+|+|+|......+ ...+.|.......... ....+.++||||+.......  ............
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDI--ISQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGC--CCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeeccc--cccccccccccc
Confidence            6899999999999999999997653322 2334455555555555 77789999999987643222  122233333444


Q ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh-hhHHHHhcccCCchhhhhHHHHHhH
Q 027618          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKKGATKLRDQ  179 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~  179 (221)
                      ...+|+++++++.++.....+..+++.++.. +    .|+++|+||+|+.++.. ....++.+......+..|+....++
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             cccCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            5678999999999888998888888877753 2    37999999999875211 1122222222233344455555555


Q ss_pred             HHHHH
Q 027618          180 QFEVD  184 (221)
Q Consensus       180 ~~~~~  184 (221)
                      .++.+
T Consensus       153 d~L~~  157 (171)
T d1mkya1         153 DTMLE  157 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54444

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.6e-18  Score=123.03  Aligned_cols=149  Identities=19%  Similarity=0.030  Sum_probs=88.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++......  .+....  .....+.. .+  ..+.+|||||...+..           ..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~--~~~~~i~~-~~~~~~l~i~D~~g~e~~~~-----------~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGH--TYDRSIVV-DGEEASLMVYDIWEQDGGRW-----------LP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CE--EEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc--CCeeee--eecceeec-cccccceeeeecccccccce-----------ec
Confidence            6899999999999999999998754221  111111  11122333 33  4678899999765332           22


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..+++.+|++++|+|++++.+... ..|+..+....+. ...|+++|+||+|+....   ....+++.+...-.++..|+
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  144 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA  144 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeC
Confidence            346678899999999986555544 4566666554332 234899999999976421   23344555443344566777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       145 k~~~~v~~~f~~  156 (168)
T d2gjsa1         145 ALHHNVQALFEG  156 (168)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            777777776665

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.6e-18  Score=122.78  Aligned_cols=150  Identities=16%  Similarity=0.170  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|||||||++++++..........  .+.......... .+  ..+.++||||..++.....          
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~----------   71 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITS----------   71 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CC--CSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccccc--ccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHH----------
Confidence            68999999999999999999887653332222  222233333333 33  3678999999776554333          


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                       ..+..++++++|++.+++-+... ..++..+.+.....  .|+++|+||+|+....   ......+........+..++
T Consensus        72 -~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (175)
T d2f9la1          72 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA  148 (175)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             -HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccccccchHHHHHHhhcccCceEEEEec
Confidence             34577899999999985544333 55666666654433  3899999999976421   12233344434455666777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       149 ~~g~~i~e~f~~  160 (175)
T d2f9la1         149 LDSTNVEEAFKN  160 (175)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            766677666665

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.9e-18  Score=123.62  Aligned_cols=152  Identities=10%  Similarity=0.062  Sum_probs=92.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .++|+++|.+|+|||||++++++...........+.+.  ........ ....+.+|||||..++           ....
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~wDt~G~e~~-----------~~~~   71 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYRNDKRIKLQIWDTAGQERY-----------RTIT   71 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGG-----------HHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccce--eeEEEEeecceEEEEEEECCCchhh-----------HHHH
Confidence            37899999999999999999987765333222222222  22223220 2346889999996532           1333


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..+++.+|++++|+|.++.-+... ..++..+......  ..|+++|+||+|.....   .+..+++.++..-+.+..|+
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa  149 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASA  149 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC--cceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecC
Confidence            456788999999999985433322 3444444443222  34789999999975421   23444555443334555666


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       150 k~g~gv~e~f~~  161 (169)
T d3raba_         150 KDNINVKQTFER  161 (169)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            666666665554

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.7e-18  Score=121.90  Aligned_cols=150  Identities=20%  Similarity=0.131  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|+|||||+|++++.........+.+.+...  ..... .....+.++||||...+.....           
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~--~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQVNDEDVRLMLWDTAGQEEFDAITK-----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEE--EEEEETTEEEEEEEECCTTGGGTTCCCH-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccce--eeeeecCceeeeeeeccCCccchhhhhh-----------
Confidence            689999999999999999998665432222222222222  22222 0234678999999877554433           


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++.++++++|+|++++-+... ..|++.+.+..+.   .|+++|+||+|+....   ....+++.++..-.++..|+.
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  146 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK  146 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             hhhccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccC
Confidence            34577899999999986544433 4566666655443   4899999999976421   234555555433345556776


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       147 ~g~~v~e~f~~  157 (164)
T d1z2aa1         147 EDLNVSEVFKY  157 (164)
T ss_dssp             TTBSSHHHHHH
T ss_pred             CCcCHHHHHHH
Confidence            66666665554

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=120.70  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|++|||||||++++++..........  .+.......... .....+.++|++|.........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----------   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT--IGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR-----------   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccc--eeeccceeeeeeeeeEEEEEeecccCccchhhHHH-----------
Confidence            68999999999999999999877654332222  222222222222 1234788999999876544333           


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..+..+|++++|++++++-+... ..++..+.+.....  .|+++|.||+|....   .......+.++..-.++..|+.
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~  148 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK  148 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCC
Confidence            45567899999999986544443 56666666654443  389999999996432   1334555555433455667777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.+..
T Consensus       149 tg~~V~e~f~~  159 (173)
T d2a5ja1         149 TACNVEEAFIN  159 (173)
T ss_dssp             TCTTHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            77777776665

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.9e-17  Score=117.14  Aligned_cols=126  Identities=21%  Similarity=0.180  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      +.+|+++|++|||||||+|+|++....... ...+.+.........+ .+..+.++||||+.+.....   .........
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~---~~~~~~~~~   75 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEV---ERIGIERAW   75 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHH---HHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeeec-cCceeeeccccccccccccc---hhHHHHHHH
Confidence            478999999999999999999998764333 2334454444455555 78899999999998754322   222233333


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .+...+|+++++++..+.........+..+.+....  ..|+++|+||+|+..
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~  126 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG  126 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhh
Confidence            455678999999999877665555554444443232  348999999999765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.2e-17  Score=117.15  Aligned_cols=151  Identities=18%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      +.++|+++|++|+|||||++++++....... .+   |.... ...+.. ++  ..+.++||+|...+.....       
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~-~~---t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~-------   70 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY-DP---TIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ-------   70 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-CS---SCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG-------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCccc-Cc---ceecccceEEec-CcEEEEeeecccccccccccccc-------
Confidence            3479999999999999999999876543221 11   11111 122233 43  3567899999887654433       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK  170 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~  170 (221)
                          ..+..+|++++|+|++++-+... ..|+..+.+..+.. ..|+++|+||+|+....   .+.+.++.++..-.++.
T Consensus        71 ----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e  145 (167)
T d1xtqa1          71 ----TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLE  145 (167)
T ss_dssp             ----GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             ----hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHHHHHHHHHcCCEEEE
Confidence                46678899999999986554444 45666666655543 34899999999975421   23445565543344566


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .|+....++.+.++.
T Consensus       146 ~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1         146 SSAKENQTAVDVFRR  160 (167)
T ss_dssp             CCTTCHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHH
Confidence            777777777776665

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2e-17  Score=122.54  Aligned_cols=118  Identities=15%  Similarity=0.215  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------c----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (221)
                      +...|+++|+.++|||||+++|+.......           +    ....+.|.........| ++..+.++||||+.+|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence            457899999999999999999974321000           0    01125676777777778 8999999999998764


Q ss_pred             CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .       .+    +...+..+|++++|+|+.++...++.+.+..+... |.   ++++|++||+|+..
T Consensus        81 ~-------~~----~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~  134 (204)
T d2c78a3          81 I-------KN----MITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVD  134 (204)
T ss_dssp             H-------HH----HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCC
T ss_pred             H-------HH----HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCC
Confidence            2       22    23455677999999999999999998888888775 42   25888899999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.1e-18  Score=121.17  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++.......  ....+.......+.. .+  ..+.+|||||...+           ....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF-----------RSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceEEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHH
Confidence            78999999999999999999976653332  222333333334444 44  35778999995431           2334


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...+..++++++|++.+++.+... ..++..+.+....  ..|+++|+||+|.....   ....+++.+...-..+..|+
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SA  149 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA  149 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccc--cccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEcc
Confidence            567789999999999985544333 4555555554232  34799999999976421   23455565543344556777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.+..
T Consensus       150 ktg~gV~e~f~~  161 (171)
T d2ew1a1         150 KESDNVEKLFLD  161 (171)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            777776666554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6e-18  Score=122.41  Aligned_cols=150  Identities=14%  Similarity=0.096  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++........  ...+.......+.. .+  ..+.+|||||...+...           .
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~-----------~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTI-----------T   72 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------H
Confidence            689999999999999999999765432211  12233333344444 44  35678999997654322           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ..+++.+|++++|+|++++.+... ..+.+.+......  ..|+++|.||.|......   .....+..+..-.++..++
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA  150 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC--CceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeC
Confidence            356788999999999986555444 4444555444332  348999999999875322   2334444433344566777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       151 ~~g~gv~e~f~~  162 (173)
T d2fu5c1         151 KANINVENAFFT  162 (173)
T ss_dssp             ---CCHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            777777777765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=119.40  Aligned_cols=150  Identities=14%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||++++++.........  ..+.......... .+  ..+.++||||...+.           ...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTT--SCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HHH
Confidence            7899999999999999999997765433222  2222233333333 33  378889999976532           122


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ......+|++++|+++++.-+... ..++..+.+....  ..|+++++||+|+....   ....+++.++..-..+..|+
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA  148 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc--cceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeC
Confidence            234556799999999985544333 4556666554333  34799999999974322   23455666554445566777


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       149 ktg~~v~e~f~~  160 (166)
T d1z0fa1         149 KTGENVEDAFLE  160 (166)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            777777776665

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-17  Score=119.90  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=100.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      |+.+..+|+++|.+|||||||++++++...... ..+.  ........+.. .+  ..+.+|||+|..++.....     
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~-~~~t--~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~-----   72 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-YDPT--IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE-----   72 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-CCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccc--cccceeeEecc-CCeeeeeeccccccccccccccc-----
Confidence            344568999999999999999999987664322 1222  22222233333 43  3577899999887654432     


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCch
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKP  168 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~  168 (221)
                            ..+..+|++++|+|.++..+... ..|+..+.+..+.. ..|+++|+||+|+...   .....+.+..+..-.+
T Consensus        73 ------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~  145 (173)
T d2fn4a1          73 ------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAY  145 (173)
T ss_dssp             ------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEE
T ss_pred             ------hhhccceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhhccccchhhhhHHHHhcCCEE
Confidence                  23344699999999986544443 45666555543322 3489999999997532   1344566666544456


Q ss_pred             hhhhHHHHHhHHHHHHh
Q 027618          169 LKKGATKLRDQQFEVDS  185 (221)
Q Consensus       169 l~~~~~~~~~~~~~~~~  185 (221)
                      +..|+....++.+.++.
T Consensus       146 ~e~Sak~g~gv~e~f~~  162 (173)
T d2fn4a1         146 FEASAKLRLNVDEAFEQ  162 (173)
T ss_dssp             EECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHH
Confidence            66788888888877776

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=7.6e-17  Score=118.65  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=82.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH--HHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEIV   94 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~   94 (221)
                      ..-++|+++|++|||||||+|+|+|...........+.|.......    ....+.++|++|..........  ....+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc----ccccceEEEEEeeccccccccccchhhhHH
Confidence            3346899999999999999999998753222222222333322222    2445668899887654333332  233334


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      .........++++++|+|++++++..+.++++.++..     ..|+++|+||+|+..
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~~  148 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP  148 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             hhhhccccchhhhhhhhhccccccccccccccccccc-----cCcceechhhccccC
Confidence            4445566778999999999988999999998888764     237999999999886

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.8e-17  Score=124.94  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE------------------EEEEeeCCceEEEEeCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM------------------QRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~------------------~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ++|+++|++++|||||+|+|++.......  ..+.+.....                  ..+.+ .+..+.++||||+.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            45999999999999999999986532211  1111111011                  11223 566899999999988


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      +.....           .++..+|++++|+|+.+++..++...+..+.+.     ..|+++++||+|+...
T Consensus        83 f~~~~~-----------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          83 FTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIHG  137 (227)
T ss_dssp             CTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSTT
T ss_pred             ccccch-----------hcccccceEEEEEecccCcccchhHHHHHhhcC-----CCeEEEEEECccCCCc
Confidence            765443           456778999999999989999999998888774     2379999999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=120.64  Aligned_cols=151  Identities=15%  Similarity=0.105  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|||||||++++++...........+.+  .....+.. .....+.+|||||...+           .....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE--FGSKIINVGGKYVKLQIWDTAGQERF-----------RSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE--EEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc--eeeEEEEecCcceeEEEEECCCchhh-----------hhhHH
Confidence            689999999999999999998765432222122222  12222222 02346889999996542           13344


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      .....++++++|+|.++.-+... ..++..+......  ..|+++|+||+|.....   ......+.++..-..+..|+.
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak  150 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL  150 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCC
Confidence            66788999999999985433332 4455555544333  34899999999964321   233445555433345566777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       151 ~~~gi~e~f~~  161 (174)
T d2bmea1         151 TGENVEEAFVQ  161 (174)
T ss_dssp             TCTTHHHHHHH
T ss_pred             CCcCHHHHHHH
Confidence            66677766665

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=6.3e-17  Score=119.09  Aligned_cols=153  Identities=15%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|++|||||||++++++.........+.+.+.......+.. ....+.+|||||...+.....           
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~e~~~~~~~-----------   73 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG-KTVKLQIWDTAGQERFRTITS-----------   73 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT-EEEEEEEECCTTTTTTTCCCG-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEee-EEEEEEEEECCCchhhHHHHH-----------
Confidence            47899999999999999999987654322222222222222222211 334678899999876544322           


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++.+|++++|+|++++.+... ..+...+.+....  ..|+++|.||+|......   +....+.......++..++.
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk  151 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL  151 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC--CceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecC
Confidence            46688899999999985544444 3344445443222  348999999999875322   22233333333345556666


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       152 ~g~gi~e~f~~  162 (194)
T d2bcgy1         152 DSTNVEDAFLT  162 (194)
T ss_dssp             TCTTHHHHHHH
T ss_pred             cCccHHHHHHH
Confidence            66666666554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.71  E-value=3.7e-17  Score=117.16  Aligned_cols=149  Identities=13%  Similarity=0.053  Sum_probs=93.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|||||||+++|.+....     ...+|.......+.+ .+..+.++||||...           +.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHH
Confidence            478999999999999999999987542     223344455555666 888999999999542           223344


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc-----cCCchhhh
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR-----ECPKPLKK  171 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~-----~~~~~l~~  171 (221)
                      ..+..++++++|++..+..+..+ ...+..+..... ....|+++|+||+|+.... .......+..     .....+..
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC  143 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc-cCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEE
Confidence            67788999999999986555444 222222211111 1234899999999986421 2233333221     11123446


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       144 Sa~~g~gv~e~~~~  157 (165)
T d1ksha_         144 SAVTGEDLLPGIDW  157 (165)
T ss_dssp             CTTTCTTHHHHHHH
T ss_pred             ECCCCCCHHHHHHH
Confidence            77666666665554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.9e-17  Score=120.97  Aligned_cols=128  Identities=21%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH-HHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~   96 (221)
                      ...+|+++|++|+|||||+|+|++........ ..+.+..+......+ .+..+.++||||+......... ........
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhHH
Confidence            35899999999999999999999987543332 234455555555555 8889999999998642211110 00001112


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      +......+|++++|++++.........++..+...     ..|+++|+||+|+...
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVH  135 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTT
T ss_pred             HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc-----CCceeeeccchhhhcc
Confidence            22233456999999999988888888877777653     2379999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=4e-18  Score=121.60  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~   97 (221)
                      .+|+++|.+|+|||||+|+|+|....... ...+.+.......... .+..+.++||||+.......  ....+..... 
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~-   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE-   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence            47999999999999999999987654332 2233444444445555 78889999999986533211  1112223333 


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccCCchhhhhHHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKKGATKL  176 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~~~~l~~~~~~~  176 (221)
                         +..+|++++|+|+++.....+......+.       ..++++++||.|..... ...+.+.+.. ..+.+..|+...
T Consensus        78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~~~~~~~~~~~~~-~~~~~~vSA~~g  146 (160)
T d1xzpa2          78 ---IEKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEKINEEEIKNKLGT-DRHMVKISALKG  146 (160)
T ss_dssp             ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCCCCHHHHHHHHTC-STTEEEEEGGGT
T ss_pred             ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccchhhhHHHHHHhCC-CCcEEEEECCCC
Confidence               34459999999999888776655444332       23799999999998632 2333333432 234455566655


Q ss_pred             HhHHHHHH
Q 027618          177 RDQQFEVD  184 (221)
Q Consensus       177 ~~~~~~~~  184 (221)
                      .++.++++
T Consensus       147 ~gi~~L~~  154 (160)
T d1xzpa2         147 EGLEKLEE  154 (160)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            55555444

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.6e-17  Score=118.09  Aligned_cols=150  Identities=12%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ++|+++|.+|+|||||++++++.........+  .+.......+.. .+  ..+.+|||||...+.....          
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t--~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~----------   69 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITT--IGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITT----------   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCc--cceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHH----------
Confidence            68999999999999999999987653332222  222233333333 33  4577899999765443322          


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~  174 (221)
                       ..++.++++++|+|.+++-+... ..+...+.....  ...+++++.+|.|.....  .+...++..+..-.++..++.
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T d1g16a_          70 -AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK  146 (166)
T ss_dssp             -HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred             -HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc--CcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCC
Confidence             45677899999999996544333 333334444322  234788999999976532  334555555444455667777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       147 ~~~~v~e~f~~  157 (166)
T d1g16a_         147 NDDNVNEIFFT  157 (166)
T ss_dssp             TTBSHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            77777776665

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-17  Score=117.61  Aligned_cols=151  Identities=13%  Similarity=0.092  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||++++++.........+.  ............ ....+.+|||+|.....           ....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--GASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------ALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC--SCEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccchheeeeccCCccceeeeeccCCcceec-----------ccch
Confidence            689999999999999999998766533222222  222222222221 23568899999976532           2223


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..++++|++++|+|++++-+... ..+++.+......  ..|+++|+||+|+....   ....+++.++..-.++..|+.
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak  148 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK  148 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhccccccc--ccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecC
Confidence            56788999999999986555444 4555555544333  34788999999976421   345566666544456667777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.+..
T Consensus       149 ~~~~v~e~F~~  159 (167)
T d1z08a1         149 QNKGIEELFLD  159 (167)
T ss_dssp             TTBSHHHHHHH
T ss_pred             CCcCHHHHHHH
Confidence            77777776664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-17  Score=118.27  Aligned_cols=151  Identities=14%  Similarity=0.058  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|||||||++++++........  .+.+........... ....+.+|||||...+..           ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS-----------LIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG-----------GHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeeeccceeeccCCCceeeeecccCCcchhcc-----------chH
Confidence            479999999999999999999776533222  222222222222221 234678999999765322           222


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..+..++++++|+|..++.+... ..++..+.......  .|+++|+||+|+.+..   .....++.++..-.++..|+.
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk  145 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK  145 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence            45678899999999986554444 56666665554433  4899999999975322   234455555433445667777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       146 ~g~~v~e~f~~  156 (164)
T d1yzqa1         146 AGYNVKQLFRR  156 (164)
T ss_dssp             TCTTHHHHHHH
T ss_pred             CCcCHHHHHHH
Confidence            77777766654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=7.4e-17  Score=116.62  Aligned_cols=155  Identities=12%  Similarity=0.069  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|++|||||||++++++.........+.+.+...............+.++||||.....           .....
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------SLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhh-----------hHHHH
Confidence            7899999999999999999987765433222222222222221111123457899999965432           22235


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccccEEEEEecCCCCCCC----hhhHHHHhccc-CCchhhh
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN----DETLEDYLGRE-CPKPLKK  171 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~----~~~~~~~l~~~-~~~~l~~  171 (221)
                      ....++++++|+|+++..+... ..|++.+.+.....  ...|+++|+||+|+....    ....+++..+. ....+..
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~  151 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLT  151 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEE
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEE
Confidence            6788899999999986555433 56677776654432  234899999999976421    23344555432 2345557


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       152 SA~~g~gv~e~f~~  165 (175)
T d1ky3a_         152 SAKNAINVDTAFEE  165 (175)
T ss_dssp             BTTTTBSHHHHHHH
T ss_pred             eCCCCcCHHHHHHH
Confidence            77777777776665

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=118.99  Aligned_cols=153  Identities=14%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|.+|+|||||++++++........  ...+.......+... ....+.+|||||..+.....           
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------   73 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT-----------   73 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-----------
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeecceeEEEEEeccccEEEEEECCCchhhHHHH-----------
Confidence            4789999999999999999999876533322  222333333333331 23468899999986543322           


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ......+|++++|++++++.+... ..++..+.+. ......+++++.||.|.....  .....++.++..-..+..++.
T Consensus        74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  152 (177)
T d1x3sa1          74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK  152 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCC
Confidence            245678899999999885433322 3444444332 223345789999999976432  234566666544556667777


Q ss_pred             HHHhHHHHHHh
Q 027618          175 KLRDQQFEVDS  185 (221)
Q Consensus       175 ~~~~~~~~~~~  185 (221)
                      ...++.+.++.
T Consensus       153 tg~gv~e~f~~  163 (177)
T d1x3sa1         153 TCDGVQCAFEE  163 (177)
T ss_dssp             TCTTHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            77777766665

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=2.9e-16  Score=120.57  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=92.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (221)
                      ..++|+++|+.|+|||||+.+|+-......                .....+.|.........| ++..+.++||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhh
Confidence            346899999999999999999863321110                112235666777778888 999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (221)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (221)
                      |.....           .+++.+|+.++|+++.+....+....++...+.     ..|.++++||+|+...+.
T Consensus        84 F~~e~~-----------~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-----~lP~i~fINKmDr~~ad~  140 (276)
T d2bv3a2          84 FTIEVE-----------RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGADL  140 (276)
T ss_dssp             CSTTHH-----------HHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT-----TCCEEEEEECTTSTTCCH
T ss_pred             hHHHHH-----------HHHHhhhheEEeccccCCcchhHHHHHHHHHHc-----CCCEEEEEeccccccccc
Confidence            876544           344556999999999999999999999888764     237999999999986543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=119.25  Aligned_cols=151  Identities=16%  Similarity=0.048  Sum_probs=90.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|.+|+|||||++++++.........+.+.....  ..... .....+.+|||||...+...           .
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~--~~~~~~~~~~~l~i~D~~g~~~~~~~-----------~   69 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGPIKFNVWDTAGQEKFGGL-----------R   69 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEE--EEECBTTCCEEEEEEECTTHHHHSSC-----------G
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccc--ccccccccccccccccccccccccee-----------c
Confidence            3689999999999999999998776432221111111111  12212 12347899999996543322           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccCCchhhhhHHH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKKGATK  175 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~~~~l~~~~~~  175 (221)
                      ...+..++++++|+|++++-+... ..++..+.+...   ..|+++|+||+|+.... .....++.....-.++..|+..
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~  146 (170)
T d1i2ma_          70 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS  146 (170)
T ss_dssp             GGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTT
T ss_pred             chhcccccchhhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCC
Confidence            256788899999999986655443 455555555432   34899999999976432 1222344443334456667776


Q ss_pred             HHhHHHHHHh
Q 027618          176 LRDQQFEVDS  185 (221)
Q Consensus       176 ~~~~~~~~~~  185 (221)
                      ..++.+.++.
T Consensus       147 ~~~v~e~f~~  156 (170)
T d1i2ma_         147 NYNFEKPFLW  156 (170)
T ss_dssp             TBTTTHHHHH
T ss_pred             CCCHHHHHHH
Confidence            6666665554

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=3.9e-17  Score=119.23  Aligned_cols=125  Identities=17%  Similarity=0.153  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      .|+++|++|||||||+|+|++......  ...+.|.........+..+..+.++||||+.............+...+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            589999999999999999998876333  344556655555555546678999999998543333333344444444433


Q ss_pred             cCCCcEEEEEEeCC--CCCCHHHH-HHHHHHHHHhccc-ccccEEEEEecCCCCC
Q 027618          101 KDGIHAVLVVFSVR--SRFSQEEE-AALHSLQTLFGKK-IFDYMIVVFTGGDELE  151 (221)
Q Consensus       101 ~~~~~~il~v~~~~--~~~~~~~~-~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~  151 (221)
                          +.++++++..  +.....+. ............. ...|+++|+||+|...
T Consensus        81 ----~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~  131 (185)
T d1lnza2          81 ----RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  131 (185)
T ss_dssp             ----CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             ----hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence                6777777654  22333332 2222222322221 3457899999999876

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.68  E-value=2.9e-16  Score=114.26  Aligned_cols=153  Identities=15%  Similarity=0.071  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      ......+|+++|.+|||||||++++.+.......     +|.........+ .+..+.++||||...+.....       
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~-------   79 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIRPYWR-------   79 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CCTTGG-------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEee-CCEEEEEEecccccccchhHH-------
Confidence            4556799999999999999999999887653322     122333344455 788899999999876543332       


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcc-----cCCc
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR-----ECPK  167 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~-----~~~~  167 (221)
                          ..+..++++++|+|.+++.+... ..++..+.+.. .....|++||+||+|+... ....+.+.+..     ...+
T Consensus        80 ----~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~-~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~  154 (182)
T d1moza_          80 ----CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWS  154 (182)
T ss_dssp             ----GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEE
T ss_pred             ----hhhccceeEEEEeeecccccchhHHHHHHHHHHhh-ccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCE
Confidence                56678899999999987766654 33333322211 1223589999999998642 13344444321     1112


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      .+..|+....++.+.++.
T Consensus       155 ~~e~SA~~g~gv~e~~~~  172 (182)
T d1moza_         155 IVASSAIKGEGITEGLDW  172 (182)
T ss_dssp             EEEEBGGGTBTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            345778777777776665

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.5e-17  Score=116.91  Aligned_cols=152  Identities=18%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|.+|+|||||++++++.........+.+   ......... .+.  .+.+|||+|...+.           ..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~---~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE---DTYRQVISC-DKSICTLQITDTTGSHQFP-----------AM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC---EEEEEEEEE-TTEEEEEEEEECCSCSSCH-----------HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCccee---eccccceee-ccccceecccccccccccc-----------cc
Confidence            37899999999999999999998764322111111   111122222 443  56779999977532           11


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ....+..+|++++|+|++++-+... ..++..+.+..+.....|+++|+||+|+....   ....+++.++..-.++..|
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~S  146 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS  146 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEc
Confidence            1233455699999999985544443 56666676655544455899999999975321   2345666654334456667


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       147 ak~~~~v~e~f~~  159 (171)
T d2erxa1         147 AKLNHNVKELFQE  159 (171)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            7766677666654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.6e-17  Score=116.52  Aligned_cols=152  Identities=16%  Similarity=0.092  Sum_probs=93.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|.+|||||||++++++.........+...+.  ....... .....+.++||+|...+...           .
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~   70 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLERFRAL-----------A   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGGGGG-----------T
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccc--ccccccccccccceeeeecCCchhhhHH-----------H
Confidence            47899999999999999999997765333222222111  1122222 02235678999997653322           2


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...+..++++++|+|++++-+... ..++..+......  ..|+++|+||+|+....   ....+++..+..-.++..|+
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC--cceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence            245677899999999985444333 4444445544333  34899999999975421   23455555543344566677


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.+..
T Consensus       149 k~~~nV~e~f~~  160 (167)
T d1z0ja1         149 KNAININELFIE  160 (167)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            766666665554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7.6e-17  Score=116.07  Aligned_cols=153  Identities=19%  Similarity=0.149  Sum_probs=95.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|.+|+|||||++++++....... .+.....  ....... .....+.+||++|.........         
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~-~~t~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~---------   70 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDY-DPTIEDS--YLKHTEIDNQWAILDVLDTAGQEEFSAMRE---------   70 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTC-CTTCCEE--EEEEEEETTEEEEEEEEECCSCGGGCSSHH---------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCccc-Ccceeec--cccccccccccccccccccccccccccchh---------
Confidence            3589999999999999999999876543222 1111111  1122222 0234677999999876543322         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                        ..++.+|++++|+|++++-+... ..|+..+.+..+. ...|+++++||+|+....   .+.+.++.++..-.++..|
T Consensus        71 --~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~S  147 (169)
T d1x1ra1          71 --QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS  147 (169)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred             --hhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEc
Confidence              23456699999999986655444 5677776665443 234799999999976532   2345666655444555566


Q ss_pred             HHHHH-hHHHHHHh
Q 027618          173 ATKLR-DQQFEVDS  185 (221)
Q Consensus       173 ~~~~~-~~~~~~~~  185 (221)
                      ++... ++.+.+..
T Consensus       148 ak~~~~nV~~~F~~  161 (169)
T d1x1ra1         148 AKDPPLNVDKTFHD  161 (169)
T ss_dssp             CSSSCBSHHHHHHH
T ss_pred             CCCCCcCHHHHHHH
Confidence            54443 45555444

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.8e-17  Score=115.33  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=97.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|||||||+|++++...........  ................+.++|+||...+.           ....
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----------~~~~   69 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYS-----------AMRD   69 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCS--EEEEEEEEEETTEEEEEEEEEECCCGGGH-----------HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCcc--ceeeccceeeeceeeeeeeeeccCccccc-----------cchh
Confidence            4789999999999999999999876533222111  11111111111123457789999976521           1122


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGATK  175 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~~  175 (221)
                      ..+..++++++|++.+++.+... ..|+..+.+..+.. ..|+++|+||+|+....  ...++++.++..-.++..|+..
T Consensus        70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~  148 (166)
T d1ctqa_          70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCC
Confidence            33455689999999986555444 56777777664432 34899999999976432  3345566655444566788888


Q ss_pred             HHhHHHHHHh
Q 027618          176 LRDQQFEVDS  185 (221)
Q Consensus       176 ~~~~~~~~~~  185 (221)
                      ..++.+.+..
T Consensus       149 g~gi~e~f~~  158 (166)
T d1ctqa_         149 RQGVEDAFYT  158 (166)
T ss_dssp             CTTHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            8888777775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.67  E-value=8.7e-17  Score=115.64  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=92.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|.+|+|||||++++++.........+.+.   ........ .+  ..+.++|+||..++.           .
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~---~~~~~~~~-~~~~~~l~i~d~~g~~~~~-----------~   67 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE---EEEEEEEE-TTEEEEEEEEECCC---CH-----------H
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc---cccccccc-ccccccccccccccccchh-----------h
Confidence            3479999999999999999999876543221111111   11122223 33  467789999976531           1


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                      .....+..+|++++|++.++..+... ..|++.+.+..+. ...|+++|+||+|.....   .+.++++.++..-.++..
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  146 (168)
T d1u8za_          68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET  146 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             hhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEE
Confidence            11223345699999999986555444 4566666655332 234899999999965321   344556665433445667


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       147 Sak~g~gv~e~f~~  160 (168)
T d1u8za_         147 SAKTRANVDKVFFD  160 (168)
T ss_dssp             CTTTCTTHHHHHHH
T ss_pred             cCCCCcCHHHHHHH
Confidence            77777777776665

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=5.1e-16  Score=113.13  Aligned_cols=154  Identities=12%  Similarity=0.064  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ++|+++|.+|||||||++++++.........+.+.+.......... ....+.++||||.........           .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-----------~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD-RLVTMQIWDTAGQERFQSLGV-----------A   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS-CEEEEEEEEECSSGGGSCSCC-----------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCC-ceEEEEeeecCCccccccccc-----------c
Confidence            6899999999999999999998764322222222222222222221 334678899999775443332           4


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhcc-cCCchhhhhH
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLGR-ECPKPLKKGA  173 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~-~~~~~l~~~~  173 (221)
                      .+..+|++++|++.++..+... ..|++.+......  ....|+++|+||+|+....  ....+++... ..-.++..|+
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA  150 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcC
Confidence            5678899999999985433333 4566666655432  1234899999999975422  2334445432 2334455677


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       151 k~~~gI~e~f~~  162 (184)
T d1vg8a_         151 KEAINVEQAFQT  162 (184)
T ss_dssp             TTTBSHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            777777776665

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.67  E-value=3.1e-16  Score=113.38  Aligned_cols=154  Identities=15%  Similarity=0.068  Sum_probs=96.2

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (221)
                      .+++....+|+++|++|||||||+|+|++.......     .+.........+ .+..+.++|+||...+          
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~~----------   73 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI----------   73 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeeccccccc----------
Confidence            355667799999999999999999999987653222     122223344555 6788999999996542          


Q ss_pred             HHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc-----cC
Q 027618           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR-----EC  165 (221)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~-----~~  165 (221)
                       .......+..+|++++|+|+++..+..+ ..++..+..... ....|+++|+||+|+.... ...+.+.+..     ..
T Consensus        74 -~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (176)
T d1fzqa_          74 -RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRV  151 (176)
T ss_dssp             -HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC
T ss_pred             -hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcC
Confidence             1333455677899999999986655544 233333322212 2234899999999987532 2234443321     11


Q ss_pred             CchhhhhHHHHHhHHHHHH
Q 027618          166 PKPLKKGATKLRDQQFEVD  184 (221)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~  184 (221)
                      ...+..|+....++.+.++
T Consensus       152 ~~~~~~SA~tg~gv~e~~~  170 (176)
T d1fzqa_         152 WQIQSCSALTGEGVQDGMN  170 (176)
T ss_dssp             EEEEECCTTTCTTHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHH
Confidence            1233356666666666554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-16  Score=112.89  Aligned_cols=151  Identities=19%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|.+|||||||++++++....... .+...  ......... .+  ..+.++||||..++..           .
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~-~~t~~--~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~-----------~   69 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDY-DPTIE--DSYTKQCVI-DDRAARLDILDTAGQEEFGA-----------M   69 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSC-CTTCC--EEEEEEEEE-TTEEEEEEEEECC----CCH-----------H
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-Ccccc--cceeeeeee-cccccccccccccccccccc-----------c
Confidence            378999999999999999999876543221 12111  222222223 33  3688999999876431           1


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      .......+|++++|+|.++.-+... ..|+..+.+..... ..|+++|+||+|.....   ....+++.++..-.++..|
T Consensus        70 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  148 (171)
T d2erya1          70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEAS  148 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECB
T ss_pred             ccccccccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEc
Confidence            1233345699999999985444333 45555555443332 34799999999976431   3456667665444556677


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.+..
T Consensus       149 ak~~~~i~e~f~~  161 (171)
T d2erya1         149 AKIRMNVDQAFHE  161 (171)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            7777777777765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-16  Score=113.30  Aligned_cols=151  Identities=17%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      .+|+++|++|||||||++++++........ ............+.. .+.  .+.+|||||...+.           ...
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~-----------~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------SVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc-cceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhH-----------HHH
Confidence            689999999999999999988765432222 222222233333333 443  67899999976532           222


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...+..+|++++|+|.+++.+... ..++..+.+....  ..|+++|.||+|......   ..+..+.+...-.++..|+
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sa  151 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSA  151 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeC
Confidence            345677899999999985444333 3344444443332  347999999999876422   2344555443345566676


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       152 k~g~gi~e~f~~  163 (170)
T d2g6ba1         152 KTGLNVDLAFTA  163 (170)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCcCHHHHHHH
Confidence            666666666554

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-16  Score=113.08  Aligned_cols=149  Identities=19%  Similarity=0.084  Sum_probs=89.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      ..+|+++|++|+|||||++++++....... .   +|...... .... .+  ..+.+|||||...+.    .       
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~-~---pTi~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~----~-------   65 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY-D---PTLESTYRHQATI-DDEVVSMEILDTAGQEDTI----Q-------   65 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCC-C---TTCCEEEEEEEEE-TTEEEEEEEEECCCCCCCH----H-------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcc-C---Cceeccccccccc-cccceEEEEeecccccccc----c-------
Confidence            478999999999999999999986643221 1   12222211 1222 33  467899999976421    0       


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~  171 (221)
                       ....+..++++++|+|++++.+.... .+...+..... ....|+++|+||+|+...   ..+.++++.++..-.++..
T Consensus        66 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~  143 (168)
T d2atva1          66 -REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYEC  143 (168)
T ss_dssp             -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred             -chhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEE
Confidence             11233456999999999865544442 33333333322 234589999999997532   1334555655544445666


Q ss_pred             hHHHHH-hHHHHHHh
Q 027618          172 GATKLR-DQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~-~~~~~~~~  185 (221)
                      |+.... ++.+.+..
T Consensus       144 Saktg~gnV~e~F~~  158 (168)
T d2atva1         144 SACTGEGNITEIFYE  158 (168)
T ss_dssp             CTTTCTTCHHHHHHH
T ss_pred             ccccCCcCHHHHHHH
Confidence            666554 36665554

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.67  E-value=8.1e-16  Score=112.95  Aligned_cols=118  Identities=16%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      +...|+++|+.++|||||+++|++....              .......+.|.........+ .+..+.++||||..+  
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~--   78 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--   78 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH--
Confidence            4478999999999999999999852110              01112345666666666777 889999999999643  


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                               +...+...+..+|++++|+|+.++...++++.+..+... +.   ++++|++||+|...
T Consensus        79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~---~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQ  133 (196)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCS
T ss_pred             ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cC---CcEEEEEecccccc
Confidence                     233444567888999999999999999988888777664 33   36999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=113.98  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (221)
                      ..+|+++|.+|+|||||++++++.........+.+.+  ......... ....+.++||||...+..           ..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~   72 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA--FLTQTVCLDDTTVKFEIWDTAGQERYHS-----------LA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGGGG-----------GH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc--cccceeeccceEEEEEeccCCCchhhhh-----------hH
Confidence            3689999999999999999999766533322222222  222222220 234688999999765322           12


Q ss_pred             HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA  173 (221)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~  173 (221)
                      ...++.++++++|+|..+..+... ..+...+.+.....  .|+++|+||+|+....   .+..+++.....-..+..|+
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SA  150 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSA  150 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeC
Confidence            245678899999999885544433 45555555543333  4899999999975421   23445555543344556677


Q ss_pred             HHHHhHHHHHHh
Q 027618          174 TKLRDQQFEVDS  185 (221)
Q Consensus       174 ~~~~~~~~~~~~  185 (221)
                      ....++.+.++.
T Consensus       151 k~g~~V~e~f~~  162 (170)
T d1r2qa_         151 KTSMNVNEIFMA  162 (170)
T ss_dssp             TTCTTHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            766666666554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=115.69  Aligned_cols=151  Identities=12%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------CCceEEEEeCCCCCCCCCCchH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~~   88 (221)
                      .+|+++|++|+|||||++++++.........  ..+.......+.+.           ....+.++||||..        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e--------   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCC--cccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence            7899999999999999999998765322211  11111111111110           12368899999943        


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccccEEEEEecCCCCCCC---hhhHHHHhcc
Q 027618           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELEDN---DETLEDYLGR  163 (221)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~  163 (221)
                         ++......++..++++++|+|+++..+...  ...++.+...  .....|+++|+||.|+....   .....++.++
T Consensus        76 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~  150 (186)
T d2f7sa1          76 ---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK  150 (186)
T ss_dssp             ---HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHH
Confidence               233344456678899999999984333222  2223332221  12334789999999975421   2345666665


Q ss_pred             cCCchhhhhHHHHHhHHHHHHh
Q 027618          164 ECPKPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..-.++..|+....++.+.++.
T Consensus       151 ~~~~~~e~Sak~~~~i~e~f~~  172 (186)
T d2f7sa1         151 YGIPYFETSAATGQNVEKAVET  172 (186)
T ss_dssp             TTCCEEEEBTTTTBTHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHH
Confidence            4345667788877778777776

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.3e-16  Score=128.07  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---CcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (221)
                      .+.+|+++|.+|+|||||+|+|+|......+....   ++|.....  +.++....+++|||||+.......++...+  
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~--  130 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFPPDTYLEK--  130 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCCHHHHHHH--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccCCCeEEEEeCCCcccccccHHHHHHH--
Confidence            45899999999999999999999976433332222   23333332  334366679999999998755443322111  


Q ss_pred             HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (221)
                          .....+|.++++.+  .+++..+...++.+++. +    .|+++|+||+|..
T Consensus       131 ----~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 ----MKFYEYDFFIIISA--TRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD  175 (400)
T ss_dssp             ----TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred             ----hhhhcceEEEEecC--CCCCHHHHHHHHHHHHc-C----CCEEEEEeCcccc
Confidence                23345577777754  47889998888888774 3    3799999999964

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-16  Score=112.26  Aligned_cols=152  Identities=14%  Similarity=0.079  Sum_probs=92.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|.+|||||||++++++...........+   ......... .+  ..+.+||++|.....           .
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~   66 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE---DFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------S   66 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------H
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---eeeeeeeec-CcceEeeccccCCCccccc-----------c
Confidence            357999999999999999999998765333221111   111122222 33  467789999976421           1


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK  171 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~  171 (221)
                      ......+.++++++|++++++.+... ..|...+..... ....|+++|+||+|+....   ......+.++..-.++..
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  145 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMET  145 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEE
T ss_pred             chHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEE
Confidence            12233455699999999986555444 455555544322 2234899999999975421   233344444333345667


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       146 Sak~g~~i~e~f~~  159 (167)
T d1kaoa_         146 SAKSKTMVDELFAE  159 (167)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHH
Confidence            77777776666554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.6e-16  Score=112.64  Aligned_cols=155  Identities=13%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|.+|||||||++++++...........+............ ....+.++|++|......          ....
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERFRK----------SMVQ   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHHHT----------TTHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhhcc----------ccce
Confidence            46899999999999999999997765433332222233222222222 345688999998643110          1122


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhhhHH
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGAT  174 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~~~~  174 (221)
                      ..+..+|++++|+|++++-+... ..++..+.+.... ...|+++|+||.|+...   ..+.++++.++..-.++..|++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk  149 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK  149 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSS
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecc
Confidence            35678899999999986655544 4566666655332 23489999999997542   1344566766543455555553


Q ss_pred             H---HHhHHHHHHh
Q 027618          175 K---LRDQQFEVDS  185 (221)
Q Consensus       175 ~---~~~~~~~~~~  185 (221)
                      .   ..++.+.++.
T Consensus       150 t~~~~~~V~e~F~~  163 (165)
T d1z06a1         150 NPNDNDHVEAIFMT  163 (165)
T ss_dssp             SGGGGSCHHHHHHH
T ss_pred             cCCcCcCHHHHHHH
Confidence            2   3455555543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-16  Score=113.34  Aligned_cols=115  Identities=17%  Similarity=0.105  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||++++++....... .+...  ......... .....+.+|||||...+....           .
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~-~~t~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~-----------~   68 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVF--ENYVADIEVDGKQVELALWDTAGLEDYDRLR-----------P   68 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCSE--EEEEEEEEETTEEEEEEEEEECCSGGGTTTG-----------G
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCc-CCcee--eeccccccccccceeeeccccCccchhcccc-----------h
Confidence            68999999999999999999877653222 11111  111112222 023368899999987654333           3


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|++++-+...  ..+...+... ..  ..|+++|+||+|...
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~piilvgnK~Dl~~  120 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP--NVPIILVGNKKDLRN  120 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECGGGTT
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CC--CCceEEeeecccccc
Confidence            56788999999999986544433  3344444443 33  248999999999875

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.65  E-value=5.8e-16  Score=118.59  Aligned_cols=115  Identities=30%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc-------c---------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      ++|+++|+.++|||||+.+|+.......       +         ....+.|.........| ++.++.++||||+.+|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhhh
Confidence            6799999999999999999853321110       0         01234566677777888 99999999999998753


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                             .+....    +..+|+.++|+|+.++...+....++.+.+. +    .|.++++||+|+..
T Consensus        82 -------~e~~~a----l~~~D~avlvvda~~Gv~~~t~~~~~~~~~~-~----~p~~i~iNk~D~~~  133 (267)
T d2dy1a2          82 -------GEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKGG  133 (267)
T ss_dssp             -------HHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGCC
T ss_pred             -------hhhhhh----hcccCceEEEeeccCCccchhHHHHHhhhhc-c----cccccccccccccc
Confidence                   333333    3445999999999999999999999888875 2    37899999999854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.8e-16  Score=112.29  Aligned_cols=120  Identities=17%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      |....++|+++|.+|+|||||+++++....... ..+...  ......... .....+.+|||||...+.....      
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~-~~~Ti~--~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~------   75 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVF--DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------   75 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCS-CCCSSC--CCEEEEEESSSCEEEEEEECCCCSSSSTTTGG------
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCc-CCCcee--eeeeEEEeeCCceEEeecccccccchhhhhhh------
Confidence            344558999999999999999999987654322 112111  111122222 0224577999999876554333      


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                           ..+..+|++++|+|++++-+...  ..+...++.. ..  ..|+++|+||+|+..
T Consensus        76 -----~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~--~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          76 -----LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPFLLIGTQIDLRD  127 (185)
T ss_dssp             -----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TCCEEEEEECTTSTT
T ss_pred             -----hcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CC--CCCeeEeeecccccc
Confidence                 56788999999999986555433  3444444443 33  238999999999765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.64  E-value=2.5e-15  Score=108.94  Aligned_cols=116  Identities=18%  Similarity=0.282  Sum_probs=79.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc-----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (221)
                      ..+|+++|++++|||||+|+|++.......     ....+.+.........+ .+..+.++|+||..+           +
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~   72 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------L   72 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------H
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccc-----------c
Confidence            368999999999999999999976432111     11123333334444445 788899999999542           3


Q ss_pred             HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...+..++..+|++++|+++.+....++...+..+... +    .|+++|+||+|+..
T Consensus        73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~----~p~iiv~NKiD~~~  125 (179)
T d1wb1a4          73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAG  125 (179)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSC
T ss_pred             ccchhhhhhhccccccccccccccchhhhhhhhhhhhc-C----CcceeccccccccC
Confidence            33444566788999999999988888887777666553 2    37999999999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=109.71  Aligned_cols=153  Identities=16%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      -.+|+++|.+|||||||++++++.........+.  ........... .+  ..+.++||+|....           ...
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~   71 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--GVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSL   71 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CC--SEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccce--eeeeeeeeeee-cCceeeEeeecccCccee-----------hhh
Confidence            3689999999999999999998765432222222  22222222222 33  45679999996542           133


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhccc-CCchhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLGRE-CPKPLK  170 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~-~~~~l~  170 (221)
                      .......+++++++++.+++.+... ..|++.+.+....  ....|+++|+||+|+.+..  ...++++.++. .-.++.
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEE
Confidence            4456788899999999985544433 4566666665432  1234899999999975421  34566777643 345566


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .|+....++.+.++.
T Consensus       152 ~Sak~~~gI~e~f~~  166 (174)
T d1wmsa_         152 TSAKDATNVAAAFEE  166 (174)
T ss_dssp             CCTTTCTTHHHHHHH
T ss_pred             EcCCCCcCHHHHHHH
Confidence            777777777776654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.9e-16  Score=112.28  Aligned_cols=151  Identities=18%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|.+|+|||||++++++...........+  .......+.. .+  ..+.+|||+|.......           
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~-----------   68 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--AAFLTQRVTI-NEHTVKFEIWDTAGQERFASL-----------   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--ceeecccccc-ccccccccccccCCchhHHHH-----------
Confidence            37899999999999999999987765433222222  1222223333 33  46889999997653211           


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC------ChhhHHHHhcccCCchh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED------NDETLEDYLGRECPKPL  169 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~------~~~~~~~~l~~~~~~~l  169 (221)
                      ....+..+|++++|+|.+++.+... ..+...+.....  ...++++++||+|+...      ......++.++..-.++
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~  146 (170)
T d1ek0a_          69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFF  146 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred             HHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEE
Confidence            2245678899999999986555444 344444444322  23489999999997532      12345566655444566


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..|+....++.+.+..
T Consensus       147 e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_         147 ETSAKTGENVNDVFLG  162 (170)
T ss_dssp             ECCTTTCTTHHHHHHH
T ss_pred             EecCCCCcCHHHHHHH
Confidence            6777777777666654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.1e-15  Score=107.79  Aligned_cols=152  Identities=18%  Similarity=0.079  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      .+|+++|.+|+|||||++++++....... ..+.+.....  ..+.. .+  ..+.+||+|+...    .+    +.  .
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~~~d~~~~~g----~e----~~--~   70 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMV-DGESATIILLDMWENKG----EN----EW--L   70 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEEE-TTEEEEEEEECCTTTTH----HH----HH--H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecce--eeecc-CCceeeeeeeccccccc----cc----cc--c
Confidence            78999999999999999999976543222 1122222222  22222 33  3567899886431    11    11  2


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG  172 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~  172 (221)
                      ...+++.+|++++|+|++++.+... ..|...+....+ ....|+++|+||+|+....   ....+++.....-.++..|
T Consensus        71 ~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S  149 (172)
T d2g3ya1          71 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS  149 (172)
T ss_dssp             HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             ccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEe
Confidence            2346788999999999985544443 344444443322 2245899999999965421   2334445443333455567


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       150 ak~g~~i~~~f~~  162 (172)
T d2g3ya1         150 AAVQHNVKELFEG  162 (172)
T ss_dssp             TTTTBSHHHHHHH
T ss_pred             CCCCcCHHHHHHH
Confidence            7777777776665

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.2e-16  Score=110.94  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|.+|||||||+++++..........+.+   ......... .....+.+||++|........          
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------   68 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDCQQCMLEILDTAGTEQFTAMR----------   68 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE---EEEEEEEESSSCEEEEEEEEECSSCSSTTHH----------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc---cccceeEEeeeeEEEeccccccCcccccccc----------
Confidence            347899999999999999999987765322211111   111112222 133468899999987643221          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcc-cCCchhhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR-ECPKPLKK  171 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~-~~~~~l~~  171 (221)
                       ...+..+|++++|+|++++.+... ..|+..+.+..+. ...|+++|+||+|+....   .+....+.++ ....++..
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  146 (167)
T d1c1ya_          69 -DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES  146 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred             -cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEE
Confidence             134455699999999986555444 5566666554332 234899999999976422   2233444443 23345667


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       147 Sak~g~gv~e~F~~  160 (167)
T d1c1ya_         147 SAKSKINVNEIFYD  160 (167)
T ss_dssp             BTTTTBSHHHHHHH
T ss_pred             cCCCCcCHHHHHHH
Confidence            77777777776664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.62  E-value=2.7e-15  Score=107.20  Aligned_cols=116  Identities=17%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|++|+|||||++++.+.......    .+|.......... ....+.+||+||...           +.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~----~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcc----cccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence            478999999999999999999876643221    2244444455555 778899999999542           112233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..++++++|+++.+..+... ..++..+.+.. .....|+++|+||.|...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~  118 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPG  118 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccch
Confidence            45678899999999986544333 33333332221 122348999999999764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=109.42  Aligned_cols=151  Identities=14%  Similarity=0.079  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ....+|+++|++|||||||++++++.......     .|.......... ....+.++|+||....           ...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~   72 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPL   72 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEEEEE-TTEEEEEEEESCCGGG-----------HHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEEeec-cceeeEEecCCCcchh-----------hhH
Confidence            45689999999999999999999876643222     233333444445 7788999999997642           133


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcc-c----CCchh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR-E----CPKPL  169 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~-~----~~~~l  169 (221)
                      ....++.++++++|+|+++.-+... ..++..+.+. ......|+++++||+|+... ....+...+.. .    ....+
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  151 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ  151 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhh-cccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEE
Confidence            4467788999999999985444333 2333322221 11234589999999998642 13334443321 1    11133


Q ss_pred             hhhHHHHHhHHHHHHh
Q 027618          170 KKGATKLRDQQFEVDS  185 (221)
Q Consensus       170 ~~~~~~~~~~~~~~~~  185 (221)
                      ..|+....++.+.++.
T Consensus       152 e~SA~tg~gv~e~~~~  167 (173)
T d1e0sa_         152 PSCATSGDGLYEGLTW  167 (173)
T ss_dssp             ECBTTTTBTHHHHHHH
T ss_pred             EeeCCCCcCHHHHHHH
Confidence            4677777777666654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=111.11  Aligned_cols=115  Identities=19%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ..+|+++|.+|+|||||++++++....... .+.  ........... .+  ..+.+|||||...+.....         
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~---------   69 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY-VPT--VFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRP---------   69 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCC--SEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGG---------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCc-CCc--eeeecceeEee-CCceeeeeccccccchhhhhhhh---------
Confidence            378999999999999999999877643221 111  11111122222 33  3688999999876543332         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..+..+|++++|+|++++-+....  .+.+.+... ..  ..|+++|.||.|+..
T Consensus        70 --~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~~i~lvgnK~Dl~~  121 (191)
T d2ngra_          70 --LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CP--KTPFLLVGTQIDLRD  121 (191)
T ss_dssp             --GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CT--TCCEEEEEECGGGGG
T ss_pred             --hcccccceeecccccchHHHHHHHHHHHHHHHhhc-CC--CCceEEEeccccccc
Confidence              567889999999999966554442  233334332 22  348999999999764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.4e-15  Score=107.86  Aligned_cols=147  Identities=17%  Similarity=0.070  Sum_probs=90.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      +..+|+++|.+|+|||||++++++......  .+....  .....+.. ++  ..+.+|||+|...     .        
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~--~~t~~~--~~~~~i~v-~~~~~~l~i~Dt~g~~~-----~--------   65 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESE--QYKKEMLV-DGQTHLVLIREEAGAPD-----A--------   65 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC--CCSSCE--EEEEEEEE-TTEEEEEEEEECSSCCC-----H--------
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc--CCccce--eEEEEeec-CceEEEEEEeecccccc-----c--------
Confidence            458999999999999999999988765221  111111  11222223 44  4578899999653     1        


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCC-----hhhHHHHhccc-CCc
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDN-----DETLEDYLGRE-CPK  167 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~-----~~~~~~~l~~~-~~~  167 (221)
                         ..++.+|++++|+|++++-+... ..|.+++...... ....|+++|+||.|.....     .....++..+. .-.
T Consensus        66 ---~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~  142 (175)
T d2bmja1          66 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCS  142 (175)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEE
T ss_pred             ---ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCe
Confidence               12345699999999986655444 4556666554332 2234789999988864321     23445565432 223


Q ss_pred             hhhhhHHHHHhHHHHHHh
Q 027618          168 PLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~  185 (221)
                      ++..|+....++.+++..
T Consensus       143 ~~e~SAk~~~~v~~~F~~  160 (175)
T d2bmja1         143 YYETCATYGLNVDRVFQE  160 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHH
T ss_pred             EEEeCCCCCcCHHHHHHH
Confidence            455677777777766665

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.59  E-value=1.6e-14  Score=107.88  Aligned_cols=122  Identities=14%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------ccCCCCcceeeEEEEE
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-------------------------------RASSSGVTSTCEMQRT   63 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~   63 (221)
                      ...+.++|+++|+..+|||||+++|+.......                               .....+.+........
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            345568899999999999999999963221100                               0111233444444445


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      .+ .++.+.++||||+.++.       ..    +......+|++++|+++.+.+..+..+.+..+... |.+   +++++
T Consensus        85 ~~-~~~~~~iiD~PGH~dfv-------~~----~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~  148 (222)
T d1zunb3          85 ST-AKRKFIIADTPGHEQYT-------RN----MATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVA  148 (222)
T ss_dssp             EC-SSEEEEEEECCCSGGGH-------HH----HHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEE
T ss_pred             ec-cceEEEEEeccchhhhh-------hh----hccccccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEE
Confidence            55 77899999999987642       22    22345667999999999999999988777766654 533   59999


Q ss_pred             EecCCCCCC
Q 027618          144 FTGGDELED  152 (221)
Q Consensus       144 ~tk~D~~~~  152 (221)
                      +||+|+...
T Consensus       149 vNK~D~~~~  157 (222)
T d1zunb3         149 INKMDLNGF  157 (222)
T ss_dssp             EECTTTTTS
T ss_pred             EEccccccc
Confidence            999998753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.4e-15  Score=108.00  Aligned_cols=117  Identities=17%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      +..+|+++|.+|||||||++++++.........+.+   ......+.. .....+.++|++|...+.....         
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~---~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---------   71 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP---------   71 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEETTEEEEEEEECCCCSGGGTTTGG---------
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee---eceeeeeeccCcceEEEeecccccccchhhhh---------
Confidence            457999999999999999999997764332221111   111122222 0234577999999776544333         


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                        ..+..+|++++|+|++++-+...  ..+...++.. ..  ..|+++|+||+|+..
T Consensus        72 --~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~--~~piilvgnK~Dl~~  123 (183)
T d1mh1a_          72 --LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CP--NTPIILVGTKLDLRD  123 (183)
T ss_dssp             --GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECHHHHT
T ss_pred             --hcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CC--CCcEEEEeecccchh
Confidence              56788999999999986554443  2344444433 22  248999999999764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=8.6e-15  Score=108.36  Aligned_cols=119  Identities=10%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .++|+++|++|||||||+|+|++....      .++|.........+ .+..+.++||||.....       ..+...+.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~-------~~~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR-------YKLSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh-------hHHHHHHH
Confidence            479999999999999999999987642      12233333333444 67789999999976421       12223333


Q ss_pred             hhcCCCcEEEEEEeCCCC-CC-HHHHHHHHHHHHHhc--ccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSR-FS-QEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~-~~-~~~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (221)
                      ......+.+++++++... .. .....++..+...+.  .....|+++|+||+|+..
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            344445788888887532 22 222333332222211  122348999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.54  E-value=6.8e-14  Score=100.72  Aligned_cols=152  Identities=12%  Similarity=0.019  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (221)
                      ++..+|+++|.+|||||||+++|.+........ ..+    ........ .+..+.++|+++........          
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~----~~~~~~~~-~~~~~~~~d~~~~~~~~~~~----------   76 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG----SNVEEIVI-NNTRFLMWDIGGQESLRSSW----------   76 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSC----SSCEEEEE-TTEEEEEEECCC----CGGG----------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccc----eeEEEEee-cceEEEEeccccccccccch----------
Confidence            345899999999999999999999987643321 111    12222333 67889999999876533222          


Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCchhh
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKPLK  170 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~l~  170 (221)
                       ......++++++|++.++..+....................|+++|+||+|..... ...+.+.+...     ..+.+.
T Consensus        77 -~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  155 (177)
T d1zj6a1          77 -NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA  155 (177)
T ss_dssp             -HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             -hhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEE
Confidence             23456679999999998665554422222222211223345899999999976432 23344444321     112344


Q ss_pred             hhHHHHHhHHHHHHh
Q 027618          171 KGATKLRDQQFEVDS  185 (221)
Q Consensus       171 ~~~~~~~~~~~~~~~  185 (221)
                      .|+....++.+.++.
T Consensus       156 ~Sa~tg~Gi~e~~~~  170 (177)
T d1zj6a1         156 CCALTGEGLCQGLEW  170 (177)
T ss_dssp             CBTTTTBTHHHHHHH
T ss_pred             EeCCCCCCHHHHHHH
Confidence            677777777776654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.2e-14  Score=104.63  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      +.|+++|++|||||||+|+|++.......  + +.+.......+....+..+.++|+||...       ...   ..+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~--~-t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~---~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--T-SITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRF---QLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBC--C-CCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHH---HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc--C-CeeEEEEEEEEeeeeeeeeeeeecccccc-------ccc---hhhhh
Confidence            47999999999999999999987653321  1 12222222222222456799999999542       111   22334


Q ss_pred             hcCCCcEEEEEEeCCCCCCHH--H-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQE--E-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ....++++++|+|+.+.....  . ..+.+.+..........|++|++||+|+..
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            456679999999988433211  1 222233333222223347899999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.1e-14  Score=104.00  Aligned_cols=115  Identities=15%  Similarity=0.065  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      .+|+++|.+|+|||||+++++....+... .+..  .......... .....+.+|||+|...+....           .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~-~~t~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENY-VPTV--FENYTASFEIDTQRIELSLWDTSGSPYYDNVR-----------P   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCS--EEEEEEEEECSSCEEEEEEEEECCSGGGTTTG-----------G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcc-CCce--eecccccccccceEEeeccccccccccccccc-----------c
Confidence            57899999999999999999877653222 1111  1122222222 123467799999976543322           2


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HH-HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+..+|++++|+|++++-+... .. +...+... ..  ..|+++|+||.|...
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CP--NTKMLLVGCKSDLRT  120 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CT--TCEEEEEEECGGGGG
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CC--cceEEEEEecccccc
Confidence            56788999999999986554443 22 33333332 33  348999999999764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.53  E-value=5.6e-14  Score=99.26  Aligned_cols=148  Identities=13%  Similarity=0.005  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      .+|+++|++|||||||+|+|++.......     .+.......... ....+.++|+||.....           .....
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCC-----CCSSCCEEEEEC-SSCEEEEEECCCCGGGH-----------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccc-----cceeeEEEEEee-eeEEEEEecCCCcccch-----------hhhhh
Confidence            37999999999999999999877643221     111222233334 67789999999976421           22334


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHh-----cccCCchhhhh
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYL-----GRECPKPLKKG  172 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l-----~~~~~~~l~~~  172 (221)
                      ....+++++++++..++.+... ..++..+.... .....|++++.||.|..... ...+....     .......+..|
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  142 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC  142 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHhh-cccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeE
Confidence            5677799999999986554443 23332332221 22345899999999987532 12222211     11111223367


Q ss_pred             HHHHHhHHHHHHh
Q 027618          173 ATKLRDQQFEVDS  185 (221)
Q Consensus       173 ~~~~~~~~~~~~~  185 (221)
                      +....++.+.++.
T Consensus       143 Aktg~gi~e~~~~  155 (160)
T d1r8sa_         143 ATSGDGLYEGLDW  155 (160)
T ss_dssp             TTTTBTHHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            7777777776654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.3e-12  Score=101.87  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEE-----------------------------------
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQ-----------------------------------   61 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~-----------------------------------   61 (221)
                      ..++|+++|..++|||||+|+|+|..+.+.+..+... .+...+.                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3468999999999999999999999875554322211 1011100                                   


Q ss_pred             -------------EEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHHhhcCCCc-EEEEEEeCCCCCCHHHHHHH
Q 027618           62 -------------RTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCIGMAKDGIH-AVLVVFSVRSRFSQEEEAAL  125 (221)
Q Consensus        62 -------------~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~il~v~~~~~~~~~~~~~~~  125 (221)
                                   ...++....+.++||||+......+  ......+...+..+...++ ++++|.++....+...  ..
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~  182 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--AL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HH
Confidence                         1222234568999999998643322  2223333343333444444 5666777765555444  33


Q ss_pred             HHHHHHhcccccccEEEEEecCCCCCC
Q 027618          126 HSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ..+++. . +...++++|+||+|...+
T Consensus       183 ~~~~~~-~-~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         183 KIAKEV-D-PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHH-C-TTCSSEEEEEECGGGSCT
T ss_pred             HHHHHh-C-cCCCceeeEEeccccccc
Confidence            334443 2 122479999999999864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.51  E-value=7.4e-13  Score=103.64  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-ee----------------------------------------
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-ST----------------------------------------   57 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t-~~----------------------------------------   57 (221)
                      -++|+++|..++|||||||+|+|....+.+..+.... +.                                        
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999998754432211100 00                                        


Q ss_pred             ----------------eEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHHHhhcCCCcEE-EEEEeCCCCCC
Q 027618           58 ----------------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCIGMAKDGIHAV-LVVFSVRSRFS  118 (221)
Q Consensus        58 ----------------~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i-l~v~~~~~~~~  118 (221)
                                      .....+..+....+.+|||||+........  .........+..+...++.+ ++|.+......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                            001112222345689999999986433221  12233334444444556664 44556553343


Q ss_pred             HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618          119 QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (221)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (221)
                      ...  ....+++.-+  ...++++|+||+|...+ ......++.
T Consensus       184 ~~~--~~~~~~~~~~--~~~r~i~Vitk~D~~~~-~~~~~~~l~  222 (306)
T d1jwyb_         184 NSD--ALQLAKEVDP--EGKRTIGVITKLDLMDK-GTDAMEVLT  222 (306)
T ss_dssp             TCS--HHHHHHHHCS--SCSSEEEEEECTTSSCS-SCCCHHHHT
T ss_pred             ccH--HHHHHHHhCc--CCCeEEEEEeccccccc-hhHHHHHHh
Confidence            332  3333444322  22479999999998863 223344444

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.49  E-value=4.7e-13  Score=95.11  Aligned_cols=149  Identities=15%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|.+|||||||+|++++......     ..+.......... .+..+.++|+||.......           ..
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~   67 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIRPY-----------WR   67 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGGGG-----------GG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccccc-----------ch
Confidence            47899999999999999999998765321     2233333344444 7788999999987653221           12


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhc-----ccCCchhhh
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLG-----RECPKPLKK  171 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~-----~~~~~~l~~  171 (221)
                      ......++++++++..+...... ...+...... ......++++++||.|+.... ...+...+.     ......+..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  146 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT  146 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEE
Confidence            45567799999999875555444 2222222222 122345789999999987632 222333221     111223446


Q ss_pred             hHHHHHhHHHHHHh
Q 027618          172 GATKLRDQQFEVDS  185 (221)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (221)
                      |+....++.+.++.
T Consensus       147 SA~~g~gv~e~~~~  160 (169)
T d1upta_         147 SATKGTGLDEAMEW  160 (169)
T ss_dssp             CTTTCTTHHHHHHH
T ss_pred             eCCCCCCHHHHHHH
Confidence            77777777766665

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=7.5e-14  Score=105.35  Aligned_cols=122  Identities=19%  Similarity=0.213  Sum_probs=83.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEeeCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG   68 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~   68 (221)
                      +...|+++|+.++|||||+.+|+.....                             .......+.|.........| .+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CC
Confidence            3479999999999999999888532110                             00012246677777777778 88


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccEE
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i  141 (221)
                      +++.++||||+.+|.           .-+...+..+|++++|+++.+.       ...+.++.+..... +|.   ++++
T Consensus        84 ~~i~iiDtPGH~df~-----------~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv---~~ii  148 (239)
T d1f60a3          84 YQVTVIDAPGHRDFI-----------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI  148 (239)
T ss_dssp             EEEEEEECCCCTTHH-----------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred             EEEEEEECCCcHHHH-----------HHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCC---CeEE
Confidence            999999999988742           3333567888999999999743       22344444443333 343   3689


Q ss_pred             EEEecCCCCCCChh
Q 027618          142 VVFTGGDELEDNDE  155 (221)
Q Consensus       142 vv~tk~D~~~~~~~  155 (221)
                      +++||+|+...+..
T Consensus       149 v~iNKmD~~~~d~~  162 (239)
T d1f60a3         149 VAVNKMDSVKWDES  162 (239)
T ss_dssp             EEEECGGGGTTCHH
T ss_pred             EEEECCCCCCCCHH
Confidence            99999998764433

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=9.6e-14  Score=109.54  Aligned_cols=118  Identities=22%  Similarity=0.284  Sum_probs=81.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEee---------------C
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLK---------------D   67 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------------~   67 (221)
                      ...+.|+++|+.++|||||+.+|+.......              .....+.|.........+.               +
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3446799999999999999999863221100              1112234444444443331               2


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ...+.++||||+.+|...       ...    +++.+|++++|+|+.++...+....++...+. +    .|.++++||+
T Consensus        95 ~~~inliDtPGh~dF~~e-------v~~----al~~~D~allVVda~eGv~~qT~~~~~~a~~~-~----~p~i~viNKi  158 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSE-------VTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALGE-R----IKPVVVINKV  158 (341)
T ss_dssp             EEEEEEECCCCCCSSCHH-------HHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CEEEEEEECH
T ss_pred             ceEEEEEcCCCcHHHHHH-------HHH----HHhhcCceEEEEecccCcchhHHHHHHHHHHc-C----CCeEEEEECc
Confidence            345889999999987632       223    34456999999999999999999888887664 2    3799999999


Q ss_pred             CCC
Q 027618          148 DEL  150 (221)
Q Consensus       148 D~~  150 (221)
                      |+.
T Consensus       159 Dr~  161 (341)
T d1n0ua2         159 DRA  161 (341)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            975

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.46  E-value=2.9e-12  Score=94.46  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CC-----cceeeEEEE----------------------EEeeCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SG-----VTSTCEMQR----------------------TVLKDG   68 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~-~~-----~t~~~~~~~----------------------~~~~~~   68 (221)
                      .+..+|+++|+..+|||||+++|++.......... ..     .........                      ......
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            34489999999999999999999974321110000 00     000000000                      000022


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      +.+.++||||..+           +...+..++..+|++++|+++.+.+ ..+.++.+..+... +.   +|++|++||+
T Consensus        86 r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i---~~iIV~vNK~  150 (205)
T d2qn6a3          86 RRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKV  150 (205)
T ss_dssp             EEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEECG
T ss_pred             EEEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CC---ceeeeccccC
Confidence            4689999999643           3344445667789999999999876 55556666655553 43   3689999999


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      |+..
T Consensus       151 Dl~~  154 (205)
T d2qn6a3         151 DVVS  154 (205)
T ss_dssp             GGSC
T ss_pred             CCcc
Confidence            9986

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.3e-12  Score=94.50  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=73.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .+..++|+++|.+|||||||+|+|++........ ..+.+.......... .+......++++.................
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhhh
Confidence            4456999999999999999999999976543322 222222222222222 55555555655554433333333333333


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ...........++.+.+............+..+...     ..++++++||+|+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~k~D~~~  141 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLA  141 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-----cccccchhhhhhccC
Confidence            333444555677777777767777777777666653     236889999999987

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=4.9e-13  Score=94.51  Aligned_cols=147  Identities=10%  Similarity=0.004  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (221)
                      +|+++|++|||||||+|+|++......     .+|.........+ ......++|++|...+...           ....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL-----------WKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECCCSGGGGGG-----------GGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeeccchhhhhh-----------Hhhh
Confidence            789999999999999999998765322     2333344444444 6778899999987653322           2256


Q ss_pred             cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC------------C
Q 027618          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC------------P  166 (221)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~------------~  166 (221)
                      ...+++++++++..+...... ..++...... ......|++++.+|.|..... ...+.+.+....            .
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  143 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV  143 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCE
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCC
Confidence            677899999999986554443 2222222222 223445799999999986521 223333332100            0


Q ss_pred             chhhhhHHHHHhHHHHHHh
Q 027618          167 KPLKKGATKLRDQQFEVDS  185 (221)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~  185 (221)
                      ..+..|+...+++.+.++-
T Consensus       144 ~~~~~SA~tg~Gv~e~~~~  162 (166)
T d2qtvb1         144 EVFMCSVVMRNGYLEAFQW  162 (166)
T ss_dssp             EEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHH
Confidence            1233577777777776664

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=2e-12  Score=94.65  Aligned_cols=119  Identities=16%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEe----------------------eCCceEEEE
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVL----------------------KDGQVVNVI   74 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~----------------------~~~~~~~li   74 (221)
                      +..+|+++|+.++|||||+|+|+|....... ....+.|.........+                      .....+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            3468899999999999999999985321110 01112222111111000                      022458899


Q ss_pred             eCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ||||..           .+...+......+|++++|+++.+.. .....+.+..++.. +.   +++++++||+|+.+
T Consensus        84 DtPGh~-----------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d  146 (195)
T d1kk1a3          84 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  146 (195)
T ss_dssp             ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             ccchhh-----------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchh
Confidence            999953           23344445566779999999998775 44455666555543 33   26889999999886

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.6e-13  Score=97.02  Aligned_cols=123  Identities=20%  Similarity=0.250  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -.|+++|.+|||||||+|+|+|........ ....+.......... ....+.++|+||.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc-CCCceEEEEEeeeec-CCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            358899999999999999999987643332 222333333333333 67778889999976311  11111111111222


Q ss_pred             hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (221)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (221)
                      ....+++++++.+.. ............+.+.     ..|.++|+||+|...+
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLREG-----KAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCC
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhhc-----cCceeeeeeeeeccch
Confidence            334567888888877 4444444444433321     2368999999998863

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=2.7e-13  Score=101.48  Aligned_cols=118  Identities=23%  Similarity=0.289  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEeeCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG   68 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~   68 (221)
                      +..+|+++|+-++|||||+.+|+.....                             .......+.+.........+ .+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CC
Confidence            3578999999999999999988642110                             01122345565666666677 88


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-------HHHHHHHHHHhcccccccEE
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-------EAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~i  141 (221)
                      ..+.++||||+.+|.           ..+......+|+.++|+++.+....+.       ++.+...+ .++.   ++++
T Consensus        81 ~~i~iiDtPGH~df~-----------~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~---~~iI  145 (224)
T d1jnya3          81 YFFTIIDAPGHRDFV-----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGL---DQLI  145 (224)
T ss_dssp             CEEEECCCSSSTTHH-----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTC---TTCE
T ss_pred             ceeEEeeCCCcHHHH-----------HHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCC---CceE
Confidence            899999999998743           334456777899999999987643322       22222222 2233   3689


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +++||+|+..
T Consensus       146 v~iNK~D~~~  155 (224)
T d1jnya3         146 VAVNKMDLTE  155 (224)
T ss_dssp             EEEECGGGSS
T ss_pred             EEEEcccCCC
Confidence            9999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.33  E-value=1.3e-11  Score=88.78  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=71.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (221)
                      .....+|+++|++|||||||+|+|++.......     ++.......+.+ .+....++|+++.........        
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------   75 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRVWK--------   75 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCGGG--------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-cccccccccccchhhhhhHHh--------
Confidence            455689999999999999999999988753221     122222333444 667788999998776543322        


Q ss_pred             HHHhhcCCCcEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                         ......++++++++..+........ .+...... ......|++++.||.|...
T Consensus        76 ---~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          76 ---NYLPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             ---GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTT
T ss_pred             ---hhhcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCccc
Confidence               4566779999999987544433322 12111111 1223458999999999764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=3e-12  Score=96.84  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEeeCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDG   68 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (221)
                      +...|+++|+.++|||||+.+|+......                             ......+.+.........+ .+
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence            34579999999999999999984321100                             0011223444444445556 77


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccccEE
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYMI  141 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~i  141 (221)
                      ..+.++||||+.+|..           .+......+|++++|+++.++.-       .+.++.+..+.. ++.+   +++
T Consensus       102 ~~i~~iDtPGH~df~~-----------~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~---~ii  166 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVT-----------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLV  166 (245)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEE
T ss_pred             ceeeeecccccccchh-----------hhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCC---eEE
Confidence            8999999999987543           22345677899999999986532       234444443433 2432   689


Q ss_pred             EEEecCCCCC
Q 027618          142 VVFTGGDELE  151 (221)
Q Consensus       142 vv~tk~D~~~  151 (221)
                      +++||+|+..
T Consensus       167 v~iNKmD~~~  176 (245)
T d1r5ba3         167 VVINKMDEPS  176 (245)
T ss_dssp             EEEECTTSTT
T ss_pred             EEEEcCCCCc
Confidence            9999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=6.3e-11  Score=86.42  Aligned_cols=114  Identities=16%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|.+|||||||++++.   . ....   .+|.......+.+ ....+.++|++|.....           ....
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f-~~~~---~pTiG~~~~~~~~-~~~~~~~~D~~gq~~~~-----------~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---I-IHGQ---DPTKGIHEYDFEI-KNVPFKMVDVGGQRSER-----------KRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---H-HHSC---CCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---c-CCCC---CCeeeeEEEEEee-eeeeeeeecccceeeec-----------cccc
Confidence            4789999999999999999983   1 1111   1234445555666 88899999999975422           2233


Q ss_pred             hhcCCCcEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccccEEEEEecCCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~--------~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (221)
                      .+.+.+++++++++..+....        ....+...+.+....  ....|+++++||+|+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            567788999999998754321        123333334433322  23448999999999763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.18  E-value=1.5e-10  Score=86.09  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=81.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|.+|||||||++.+.....    .    +|.........+ .+..+.++|+.|......           .+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~----pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~r~-----------~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----V----LTSGIFETKFQV-DKVNFHMFDVGGQRDERR-----------KWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----C----CCCSCEEEEEEE-TTEEEEEEECCCSTTTTT-----------GGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----C----CCCCeEEEEEEE-CcEEEEEEecCccceecc-----------chh
Confidence            47899999999999999999853221    1    122233344555 788999999999775432           223


Q ss_pred             hhcCCCcEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC----hhhHHHHhcc
Q 027618           99 MAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN----DETLEDYLGR  163 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~----~~~~~~~l~~  163 (221)
                      .+...++++++|++.++.        -.....+.+..+...+..+  ...|++|++||+|+..+.    ...+.+|..+
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~  144 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPE  144 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGG
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCcc
Confidence            577889999999997631        1122234445555554433  334899999999987421    1245555543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=6.3e-11  Score=85.91  Aligned_cols=111  Identities=12%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|..|||||||++.+.....+..         ......+.+ ....+.+|||.|...+.           ....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~---------~~~~~~~~~-~~~~~~i~D~~Gq~~~~-----------~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT---------GIVETHFTF-KDLHFKMFDVGGQRSER-----------KKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC---------SEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc---------cEEEEEEEe-eeeeeeeeccccccccc-----------cchh
Confidence            46899999999999999999875443211         122234445 77889999999976532           3334


Q ss_pred             hhcCCCcEEEEEEeCCCCCCHH--------HHHHHHHHHHHhc--ccccccEEEEEecCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFSQE--------EEAALHSLQTLFG--KKIFDYMIVVFTGGDEL  150 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~--------~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~  150 (221)
                      .+++.++++++|++.++..+..        .............  .....|+++++||.|..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            6788999999999976433221        1222222222222  12234899999999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=4.9e-11  Score=92.64  Aligned_cols=90  Identities=18%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~   83 (221)
                      .+|+++|.|+||||||+|+|++...+... ..+.+|..+....+..+.                ...+.++|.||+....
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            78999999999999999999987653222 345666666666665422                2368899999998755


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      .....+..++...+..    +|+++.|+++.
T Consensus        90 ~~g~GLGn~fL~~ir~----~d~lihVV~~f  116 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRA----VDAIYQVVRAF  116 (296)
T ss_dssp             CSSSSSCHHHHHHHTT----CSEEEEEEECC
T ss_pred             ccccccHHHHHHHhhc----cceeEEEEecc
Confidence            5555455566655544    49999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.7e-10  Score=82.79  Aligned_cols=114  Identities=14%  Similarity=0.081  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (221)
                      ..+|+++|..|||||||++++.....  ..    .+|.......... ....+.++|++|...+.           ....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~----~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SG----VPTTGIIEYPFDL-QSVIFRMVDVGGQRSER-----------RKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SC----CCCCSCEEEEEEC-SSCEEEEEECCCSTTGG-----------GGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CC----CceeeEEEEEEec-cceeeeecccccccccc-----------cccc
Confidence            47899999999999999999975543  11    1233334444555 77889999999987533           2233


Q ss_pred             hhcCCCcEEEEEEeCCCCCC--------HHHHHHHHHHHHHhcc--cccccEEEEEecCCCC
Q 027618           99 MAKDGIHAVLVVFSVRSRFS--------QEEEAALHSLQTLFGK--KIFDYMIVVFTGGDEL  150 (221)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~--------~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~  150 (221)
                      ..+..+++++++++..+...        ......++.+......  ....|+++++||.|+.
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence            56788899999999764321        1112223333332221  2234899999999975

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=3e-11  Score=94.84  Aligned_cols=88  Identities=15%  Similarity=0.006  Sum_probs=43.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE----e-------------------eCCceEEEEeCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV----L-------------------KDGQVVNVIDTP   77 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~-------------------~~~~~~~liDtP   77 (221)
                      .|+++|.|+||||||+|+|++......  ..+.+|..++.....    .                   .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~--nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchh--cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            689999999999999999999865322  223334433322210    0                   022458899999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (221)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (221)
                      |+........    -+...+....+.+|++++|+++.
T Consensus        80 Gli~ga~~g~----~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGR----GLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhccc----chHHHHHHhhccceEEEEEeccc
Confidence            9976332222    22222334456789999999975

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=5.5e-11  Score=87.82  Aligned_cols=61  Identities=26%  Similarity=0.384  Sum_probs=38.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc-cC---CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-AS---SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~---~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      +.+.+|+|++|||||||+|+|++.....++ .+   ..|  +|+..+...  +  .....++||||+-++.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~--l--~~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--F--DFGGYVVDTPGFANLE  161 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--C--TTSCEEESSCSSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE--E--CCCcEEEeCCcccccc
Confidence            468899999999999999999987544332 11   112  333333322  2  2346899999997754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.04  E-value=5.8e-11  Score=91.44  Aligned_cols=88  Identities=18%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (221)
                      .+|++||.|+||||||+|+|++......  ..+.+|..++...+..+..                -.+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~--~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccc--cCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            6899999999999999999998765322  3345666666666654221                247799999998633


Q ss_pred             CCchHHHHHHHHHHHhhcCCCcEEEEEEeC
Q 027618           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (221)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  113 (221)
                      ....-+..++.+.+..+    |+++.|+++
T Consensus        81 ~~g~Glg~~FL~~ir~~----d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIRET----DAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC----SEEEEEEEC
T ss_pred             ccCCCccHHHHHHHHhc----cceEEEeec
Confidence            32233455566666555    999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=3.8e-10  Score=86.54  Aligned_cols=69  Identities=20%  Similarity=0.307  Sum_probs=44.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (221)
                      +......+|+++|.|+||||||+|+|.+.....++ ..+|.|...+...    .+..+.++||||+..+.....
T Consensus       107 ~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~----~~~~~~l~DTPGi~~p~~~~~  175 (273)
T d1puja_         107 GVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVK----VGKELELLDTPGILWPKFEDE  175 (273)
T ss_dssp             TCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCH
T ss_pred             cCCCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEE----CCCCeEEecCCCccccCCccH
Confidence            34456789999999999999999999998875554 3445565543221    456799999999986654444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=1.6e-10  Score=85.56  Aligned_cols=60  Identities=32%  Similarity=0.471  Sum_probs=35.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc-cC---CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-AS---SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~---~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (221)
                      +.+.+|+|++|||||||+|+|++.....++ .+   ..|  +|+....  +.. .+  ..++||||+-++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~-~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-SG--GLVADTPGFSSLE  162 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-TT--EEEESSCSCSSCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--Eec-CC--CEEEECCcccccc
Confidence            467789999999999999999997544332 11   122  2333332  222 33  5799999997654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=6.1e-09  Score=76.30  Aligned_cols=132  Identities=19%  Similarity=0.212  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce------------------eeEEEEEE------------
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS------------------TCEMQRTV------------   64 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~------------------~~~~~~~~------------   64 (221)
                      +...+..|+++|++|+||||++-.|+..... .+....-.+.                  ........            
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~-~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            4556689999999999999998777533210 0000000000                  00000000            


Q ss_pred             ----eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc----CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc
Q 027618           65 ----LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI  136 (221)
Q Consensus        65 ----~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~  136 (221)
                          ..++..++||||||...   .+.....++........    ..++-.++|+++...     ...+..+...+..  
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~-----~~~~~~~~~~~~~--  155 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG-----QNGLVQAKIFKEA--  155 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH-----HHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccccC-----cchhhhhhhhccc--
Confidence                01345689999999763   34445555555544332    235788999998722     2222222222221  


Q ss_pred             cccEEEEEecCCCCCCChhhH
Q 027618          137 FDYMIVVFTGGDELEDNDETL  157 (221)
Q Consensus       137 ~~~~ivv~tk~D~~~~~~~~~  157 (221)
                      ...--+++||.|....-+..+
T Consensus       156 ~~~~~lI~TKlDe~~~~G~~l  176 (213)
T d1vmaa2         156 VNVTGIILTKLDGTAKGGITL  176 (213)
T ss_dssp             SCCCEEEEECGGGCSCTTHHH
T ss_pred             cCCceEEEecccCCCcccHHH
Confidence            124569999999865333333

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.82  E-value=1.6e-08  Score=75.46  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=44.2

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (221)
                      ..+.++|+||..+..    .........+ . ....+.+++++++.....++..................|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~----~~~~~~~~~~-~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETF----LFHEFGVRLM-E-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHH----HHSHHHHHHH-H-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHH----HHHHHHHHHH-h-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            458899999986421    1111111111 1 234468889998875666665433333322222233447899999999


Q ss_pred             CCC
Q 027618          149 ELE  151 (221)
Q Consensus       149 ~~~  151 (221)
                      ...
T Consensus       169 ~~~  171 (244)
T d1yrba1         169 LLS  171 (244)
T ss_dssp             GCC
T ss_pred             ccc
Confidence            997

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.3e-08  Score=74.40  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=45.9

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc----CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      +..+.+|||||...   .+....+++.+......    ..++-+++|+++..... ........... .+     .--++
T Consensus        91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~-~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN-AVSQAKLFHEA-VG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH-HHHHHHHHHHH-SC-----CCEEE
T ss_pred             CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc-hHHHHhhhhhc-cC-----CceEE
Confidence            45689999999763   23445555555543221    23578899999873221 11222222222 12     45699


Q ss_pred             EecCCCCCCChhhHHH
Q 027618          144 FTGGDELEDNDETLED  159 (221)
Q Consensus       144 ~tk~D~~~~~~~~~~~  159 (221)
                      +||.|....-+..+.-
T Consensus       161 lTKlDe~~~~G~~l~~  176 (211)
T d2qy9a2         161 LTKLDGTAKGGVIFSV  176 (211)
T ss_dssp             EECCTTCTTTTHHHHH
T ss_pred             EeecCCCCCccHHHHH
Confidence            9999987543433333

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.81  E-value=1e-08  Score=74.84  Aligned_cols=78  Identities=21%  Similarity=0.164  Sum_probs=44.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHH---HHhh-cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKC---IGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (221)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (221)
                      +..+++|||||....   +....+++...   +... ...++-+++|+++.... ..-......... ++     +--++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~-~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEA-VG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHH-HC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhc-cC-----CceEE
Confidence            457899999997643   33344444433   2222 23567889999987443 222233332222 23     34589


Q ss_pred             EecCCCCCCChh
Q 027618          144 FTGGDELEDNDE  155 (221)
Q Consensus       144 ~tk~D~~~~~~~  155 (221)
                      +||.|....-+.
T Consensus       158 ~TKlDet~~~G~  169 (207)
T d1okkd2         158 VTKLDGTAKGGV  169 (207)
T ss_dssp             EECTTSSCCCTT
T ss_pred             EeccCCCCCccH
Confidence            999998754333

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.80  E-value=1.2e-08  Score=74.55  Aligned_cols=129  Identities=14%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee------------------EEEEE----E------
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC------------------EMQRT----V------   64 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~------------------~~~~~----~------   64 (221)
                      .-+...+..|+++|++|+||||++-.|+..... .+....-.|..+                  .....    +      
T Consensus         6 ~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~   84 (211)
T d1j8yf2           6 VIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK   84 (211)
T ss_dssp             CSCSSSSEEEEEECSCCC----HHHHHHHHHHH-TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHH
Confidence            345566788999999999999998777633211 100000000000                  00000    0      


Q ss_pred             ------eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618           65 ------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (221)
Q Consensus        65 ------~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (221)
                            ...+..+++|||||..... .......++.......  .++-+++|+++.....  ....+....+.++     
T Consensus        85 ~a~~~~~~~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~~-----  154 (211)
T d1j8yf2          85 RGVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQASK-----  154 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHCT-----
T ss_pred             HHHHHhhccCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhcccC-----
Confidence                  0144578999999975321 1122234444443333  3468899998874432  2222222222212     


Q ss_pred             cEEEEEecCCCCCC
Q 027618          139 YMIVVFTGGDELED  152 (221)
Q Consensus       139 ~~ivv~tk~D~~~~  152 (221)
                      .--+++||.|....
T Consensus       155 ~~~lI~TKlDet~~  168 (211)
T d1j8yf2         155 IGTIIITKMDGTAK  168 (211)
T ss_dssp             TEEEEEECTTSCSC
T ss_pred             cceEEEecccCCCc
Confidence            34588999998753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=7.8e-09  Score=80.78  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +++..+|++.|+||||||||++.|+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHH
Confidence            3456999999999999999999997

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.66  E-value=2.4e-08  Score=72.85  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (221)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (221)
                      .+..+++|||||...   .+.....++.......  .++-+++|+++...  ......+....+.++     .--+++||
T Consensus        91 ~~~d~vlIDTaGr~~---~d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TK  158 (207)
T d1ls1a2          91 EARDLILVDTAGRLQ---IDEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTK  158 (207)
T ss_dssp             HTCCEEEEECCCCSS---CCHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEEC
T ss_pred             ccCcceeecccccch---hhhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEee
Confidence            345689999999874   2444556666554433  45788899888633  223333333333323     34599999


Q ss_pred             CCCCCCChh
Q 027618          147 GDELEDNDE  155 (221)
Q Consensus       147 ~D~~~~~~~  155 (221)
                      .|....-+.
T Consensus       159 lDe~~~~G~  167 (207)
T d1ls1a2         159 LDGDARGGA  167 (207)
T ss_dssp             GGGCSSCHH
T ss_pred             cCccccchH
Confidence            998653333

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.54  E-value=8.6e-08  Score=74.66  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ....+|++.|++|||||||++.|+.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4569999999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.3e-07  Score=69.85  Aligned_cols=31  Identities=35%  Similarity=0.400  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+.++
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG   55 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG   55 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            3478999999999999999999998776554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-06  Score=66.82  Aligned_cols=68  Identities=26%  Similarity=0.301  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFS   83 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~   83 (221)
                      ..+...|+++|+.++|||+|+|.|+|... +..+....+.|.-........  ..+..+.++||.|+.+..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            34557899999999999999999998763 233333344455444444333  134578999999998744

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.10  E-value=1.2e-05  Score=56.42  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc
Q 027618           21 TVVLVGRTGNGKSATGNSILGRRAF   45 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~~~~   45 (221)
                      +|+++|++|+|||||++.|++...+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            6899999999999999999986543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.08  E-value=9.3e-07  Score=63.98  Aligned_cols=30  Identities=20%  Similarity=0.100  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G   56 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG   56 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccccCCC
Confidence            368899999999999999999998766554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=1.7e-06  Score=64.18  Aligned_cols=30  Identities=27%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||+++|+|...+..+
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~p~~G   57 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIKPSSG   57 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            478999999999999999999999876554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.00  E-value=1.9e-06  Score=64.01  Aligned_cols=30  Identities=30%  Similarity=0.427  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||+++|+|...+..+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            478999999999999999999998766544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.00  E-value=2.1e-06  Score=63.18  Aligned_cols=31  Identities=26%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|.|...+.++
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCCCCCcc
Confidence            3478999999999999999999998765544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.99  E-value=2.2e-06  Score=63.36  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+.++
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG   61 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   61 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCCC
Confidence            478999999999999999999998776554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.99  E-value=2.6e-06  Score=63.39  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .++.++.-+.  +..++++|++|||||||++.|+|...+..+
T Consensus        18 L~~isl~i~~--Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   57 (242)
T d1mv5a_          18 LRDISFEAQP--NSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (242)
T ss_dssp             EEEEEEEECT--TEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             eeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHHhhCCCCC
Confidence            3344444333  489999999999999999999998766544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.1e-06  Score=66.86  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618            7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus         7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ..+.++.-+.  +..++++|++|||||||++.|+|...+..+
T Consensus        52 L~~isl~i~~--Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          52 LKNINLNIEK--GEMLAITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             EEEEEEEECT--TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EeCeEEEEcC--CCEEEEECCCCChHHHHHHHHhCCCcCCCc
Confidence            3344443333  478999999999999999999998765443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3.1e-06  Score=62.86  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..|+++|++|||||||++.|+|...+..+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            478999999999999999999998765443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.93  E-value=3.2e-06  Score=62.54  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||+++|+|...+.++
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~p~sG   58 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            478999999999999999999998776554

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.4e-06  Score=63.08  Aligned_cols=31  Identities=23%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCcC
Confidence            3478999999999999999999998766544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.92  E-value=2.3e-06  Score=62.88  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+.++
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG   55 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCC
Confidence            3478999999999999999999998766544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.90  E-value=3.6e-06  Score=62.97  Aligned_cols=30  Identities=37%  Similarity=0.490  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||++.|+|...+..+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            478999999999999999999998765443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.8e-06  Score=62.17  Aligned_cols=31  Identities=16%  Similarity=0.119  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      .+..++++|++|||||||++.|.|...+.++
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCccccCC
Confidence            3478999999999999999999998765443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.90  E-value=3.7e-06  Score=63.01  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      +..++++|++|||||||+++|+|...+.++
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCcCCCc
Confidence            478899999999999999999998765543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=4.4e-06  Score=61.69  Aligned_cols=29  Identities=34%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      -.++++||+|||||||++.|+|...+..+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G   53 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            46789999999999999999998866544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.82  E-value=6.6e-06  Score=61.64  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||+++|+|...+.++
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCccCCCC
Confidence            3478999999999999999999998765443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.81  E-value=3.4e-06  Score=62.44  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||+++|.|...+..+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G   60 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCcCCCCc
Confidence            3478999999999999999999998766554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.75  E-value=5.6e-06  Score=61.93  Aligned_cols=31  Identities=35%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR   48 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~   48 (221)
                      ++..++++|++|||||||++.|+|...+..+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCcccc
Confidence            3478999999999999999999998765443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=5.8e-06  Score=61.01  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ++..++++|++|||||||+++|+|..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45789999999999999999999964

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=3.3e-06  Score=61.06  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+++|.||+||||+.+.|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=1.1e-05  Score=56.74  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++|++.|++|+|||||++.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999999754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.65  E-value=5e-05  Score=56.39  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +...|+|.||+|+|||+++++|++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3467999999999999999999753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.4e-05  Score=55.46  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|+++|++|||||||++.|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999999853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=8.3e-05  Score=55.73  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..+++||++|+|||+++..+...... ... +.  .         . .+..+.-+|...+........++.+.+...+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~-~~v-p~--~---------l-~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~  105 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQ-GDV-PE--V---------M-ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ  105 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH-TCS-CG--G---------G-TTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHh-CCc-cc--c---------c-ccceeEEeeechHhccCccchhHHHHHHHHHHH
Confidence            57899999999999999987754321 110 00  0         1 445666777776665444444455555555554


Q ss_pred             hcCCCcEEEEEEeCC
Q 027618          100 AKDGIHAVLVVFSVR  114 (221)
Q Consensus       100 ~~~~~~~il~v~~~~  114 (221)
                      .....+.++|+-++.
T Consensus       106 ~~~~~~iIlfiDeih  120 (268)
T d1r6bx2         106 LEQDTNSILFIDEIH  120 (268)
T ss_dssp             HSSSSCEEEEETTTT
T ss_pred             hhccCCceEEecchH
Confidence            433334555544444

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.7e-05  Score=55.52  Aligned_cols=81  Identities=17%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      ..++++|++|+|||+++..|...-..  +..+.  .         . .+..++-+|...+........++.+.+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~--~---------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPE--G---------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH--TCSCG--G---------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHh--CCCCH--H---------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            57899999999999999887654321  10000  0         1 556677888777665444445566666666654


Q ss_pred             hcC-CCcEEEEEEeCC
Q 027618          100 AKD-GIHAVLVVFSVR  114 (221)
Q Consensus       100 ~~~-~~~~il~v~~~~  114 (221)
                      ... ..++|+|+-++.
T Consensus       110 ~~~~~~~iILfIDeih  125 (195)
T d1jbka_         110 LAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHSTTTEEEEEETGG
T ss_pred             HhcCCCcEEEEcchHH
Confidence            433 336777777655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00016  Score=53.83  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +..++|.||+|+|||+++++|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            466899999999999999999843

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2e-05  Score=55.70  Aligned_cols=23  Identities=30%  Similarity=0.658  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|+|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.44  E-value=4.1e-05  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++||||||+++.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.00031  Score=52.00  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .-|++.||+|+|||+++++|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            56899999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.42  E-value=5.5e-05  Score=52.52  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..|++.|++||||||+.+.|...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00034  Score=52.09  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++-|++.||+|+|||+++++++..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            467999999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.38  E-value=6.3e-05  Score=53.49  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+..|+++|++||||||+...|+..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34578899999999999999988754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.37  E-value=4.1e-05  Score=53.02  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+|+++|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=5.7e-05  Score=53.24  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++.|+++||+||||||+++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.33  E-value=7.8e-05  Score=52.76  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..+..|++.|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34467899999999999999999863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.2e-05  Score=51.48  Aligned_cols=22  Identities=41%  Similarity=0.711  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.31  E-value=7.9e-05  Score=52.80  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++.+|+++|++||||||+...|+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999873

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.28  E-value=7.6e-05  Score=51.54  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|++.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998744

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=7.6e-05  Score=51.68  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|+++|.+|||||||++.|+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999988654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=8.3e-05  Score=53.60  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +..|+++||+|||||||++.|+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.27  E-value=9.3e-05  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..|++.|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999765

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.27  E-value=9.9e-05  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++..|.|+|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999988864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.25  E-value=7.6e-05  Score=52.87  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+|++.|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988644

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00013  Score=51.90  Aligned_cols=26  Identities=15%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +....|+++|++||||||+...|+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00018  Score=53.93  Aligned_cols=24  Identities=25%  Similarity=0.464  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|+|.|++|+|||++++++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            467999999999999999999865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.22  E-value=0.002  Score=47.83  Aligned_cols=72  Identities=7%  Similarity=-0.056  Sum_probs=37.1

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ..++++|||+-.......          .......+|.++++...+ ..+... ...++.+.+...........+|+|+.
T Consensus       116 ~D~viiD~p~~~~~~~~~----------~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~  184 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFA----------MPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSR  184 (269)
T ss_dssp             CSEEEEEEECSSCSTTTT----------HHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECC
T ss_pred             CCEEEeccCCccchhHHH----------HHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeee
Confidence            458899998754321111          112234568888887765 322222 34555555432222212245788987


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      +...
T Consensus       185 ~~~~  188 (269)
T d1cp2a_         185 KVAN  188 (269)
T ss_dssp             SSSC
T ss_pred             cCCC
Confidence            7554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00014  Score=50.80  Aligned_cols=24  Identities=38%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|+++|.+||||||+...++.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999998863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00012  Score=50.52  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+..|++.|++||||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4477788999999999999998643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=8.7e-05  Score=52.54  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +-|+|+||+|||||||++.|+..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            34899999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.17  E-value=0.00016  Score=51.36  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+..+|+++|++||||||+...|+..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            445689999999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.6e-05  Score=51.52  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +.|.+.|++|+|||||+..++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            458999999999999999987543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00024  Score=56.05  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (221)
                      -.++|||++|+|||+++..|.....  .+..+..           . .+..+.-+|...+........++...+...+..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~--~~~vp~~-----------l-~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~  109 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPEG-----------L-KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE  109 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHH--HTCSCTT-----------S-TTCEEEEECC-----------CHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHH--hCCCCHH-----------H-cCceEEEeeHhhhhcccCcchhHHHHHHHHHHH
Confidence            3468999999999999987764322  1110100           1 455666777766655333333444555555544


Q ss_pred             hcCC-CcEEEEEEeCC
Q 027618          100 AKDG-IHAVLVVFSVR  114 (221)
Q Consensus       100 ~~~~-~~~il~v~~~~  114 (221)
                      .... .+.|||+-++.
T Consensus       110 ~~~~~~~~ilfide~h  125 (387)
T d1qvra2         110 VVQSQGEVILFIDELH  125 (387)
T ss_dssp             HHTTCSSEEEEECCC-
T ss_pred             hccCCCceEEEeccHH
Confidence            3333 24566665554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.00012  Score=51.34  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.15  E-value=0.0001  Score=54.91  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..+.-|+|.||||+||||+..+|++..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            344668999999999999999997653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.0001  Score=50.99  Aligned_cols=21  Identities=43%  Similarity=0.673  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ++|+|+|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468899999999999988875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.12  E-value=0.00014  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.|++.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998853

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=0.00016  Score=50.05  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|+|.|++||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888899999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00016  Score=51.29  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+|+++|++||||||....|+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999888643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00018  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++.|++.|++||||||+.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.06  E-value=0.00016  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999888754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.01  E-value=0.00017  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.00021  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...|.++|++||||||+...|+..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999998654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00017  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .|+|+||+||||||+++.|+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999998654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00022  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00021  Score=50.02  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +|+++|++||||||..+.|...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999888643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00013  Score=51.46  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|.|+|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457888999999999999999854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00027  Score=49.49  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      -+|+++|++||||||+...|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.88  E-value=0.00026  Score=49.08  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ..|+++|++||||||+.+.|.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            357889999999999998884

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.88  E-value=0.00021  Score=55.09  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..|++.|++|+||||++|+|++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            458999999999999999999754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0013  Score=48.17  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+++.|++|+||||++..++..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            45788999999999999887543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00038  Score=50.97  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ...++|.||+|+||||+++++++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.79  E-value=0.00038  Score=48.69  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.|++.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4577889999999999999864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00038  Score=53.22  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..|+|+||||+|||.|.++|+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4467899999999999999999753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.76  E-value=0.00051  Score=50.77  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ......+++.|++|+|||++++.++..
T Consensus        40 ~~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          40 GHHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            344568999999999999999998754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.73  E-value=0.00041  Score=49.07  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....+..|++-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3445578999999999999999998643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00063  Score=50.01  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      .....++|.||+|+||||++.+|+...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344678999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00052  Score=50.11  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++|.||+|+||||+++.|+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            45889999999999999998754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.00064  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+..|++.|.+||||||+.+.|-.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988743

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0055  Score=44.65  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+++.||+|+||||++.+++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999887653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.60  E-value=0.00078  Score=50.49  Aligned_cols=48  Identities=15%  Similarity=0.121  Sum_probs=36.4

Q ss_pred             HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      +...+..+|+||+|+|+.++++..+..+.+.++       .+|.++|+||+|+..
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~   56 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKAD   56 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCc
Confidence            344556679999999999888877755544432       247999999999987

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.59  E-value=0.0044  Score=44.66  Aligned_cols=65  Identities=14%  Similarity=-0.040  Sum_probs=37.8

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ..++++|+|+...             ......+..+|.+++++..+ ..+... .+.++.+++. +.   +..-+|+|+.
T Consensus       112 ~d~IiiD~~~~~~-------------~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~~---~~~giv~N~~  173 (237)
T d1g3qa_         112 FDFILIDCPAGLQ-------------LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-GL---AILGFVLNRY  173 (237)
T ss_dssp             CSEEEEECCSSSS-------------HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-TC---EEEEEEEEEE
T ss_pred             CCEEEEccccccc-------------ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-hh---hhhhhhhccc
Confidence            4688999997543             11223445679999999876 222222 3444444432 22   1244889999


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      +...
T Consensus       174 ~~~~  177 (237)
T d1g3qa_         174 GRSD  177 (237)
T ss_dssp             TSCT
T ss_pred             cccc
Confidence            8664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.004  Score=42.34  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=34.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (221)
                      .++..|.|-|+=|||||||++.++..-.....  ..++|-... ..+.. .+..+.-+|.-=
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~--V~SPTF~l~-~~Y~~-~~~~i~H~DlYR   88 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN--VKSPTYTLV-EEYNI-AGKMIYHFDLYR   88 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSC--CCCCTTTCE-EEEEE-TTEEEEEEECTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccccc--cCCCceEEE-Eeecc-CCceEEEEEEec
Confidence            34578999999999999999998755433221  222222111 11222 556777788433

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.02  Score=41.48  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 027618            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l   39 (221)
                      ++++..+...   ...+++.|++.+||||+++++
T Consensus        31 VpNdi~l~~~---~~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          31 IANPLNLSPQ---RRMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             CCEEEEECSS---SCEEEEECCTTSSHHHHHHHH
T ss_pred             cceeEEECCC---ceEEEEeccCchhhHHHHHHH
Confidence            4555444332   366888999999999999886

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.47  E-value=0.021  Score=42.48  Aligned_cols=18  Identities=39%  Similarity=0.615  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 027618           20 RTVVLVGRTGNGKSATGN   37 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin   37 (221)
                      ++|++-|+.|+||||+.-
T Consensus         3 r~IaisgKGGVGKTT~a~   20 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQ   20 (289)
T ss_dssp             EEEEEEECTTSSHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHH
Confidence            678889999999999753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0011  Score=50.51  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      .....+..|++.|++||||||+.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            335667899999999999999987764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00014  Score=51.46  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~   40 (221)
                      ..+++|++|+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            34678999999999999974

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.0011  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           20 RTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ..++|.||+|+||||++..++...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            458899999999999999987643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.42  E-value=0.0012  Score=47.43  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..+..|.+.|.+||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.00064  Score=51.50  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027618           21 TVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l   39 (221)
                      .-+++|++|+||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4478899999999999887

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.25  E-value=0.00083  Score=49.87  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+.|++|+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0021  Score=49.11  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=23.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           13 TSPSNGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++..+.-.++++||+|+|||.|..+|..
T Consensus        46 ~~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          46 GHEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            34444555789999999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.24  E-value=0.047  Score=39.16  Aligned_cols=20  Identities=25%  Similarity=0.232  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027618           21 TVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~   40 (221)
                      .+++.|++.+||||+++++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            57899999999999998853

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.22  E-value=0.0035  Score=45.15  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=34.8

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 027618           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG  147 (221)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (221)
                      ..++++|+|+...     .        .....+..+|.+++|...+ ..+... .+.+..+.+. +.+   .+-+|+|+.
T Consensus       110 ~D~viiD~~~~~~-----~--------~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~-~~~---~~~iv~N~~  171 (232)
T d1hyqa_         110 TDILLLDAPAGLE-----R--------SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-GTK---VLGVVVNRI  171 (232)
T ss_dssp             CSEEEEECCSSSS-----H--------HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCE---EEEEEEEEE
T ss_pred             cceeeeccccccc-----c--------hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc-ccc---ccccccccc
Confidence            3478899988653     1        1111222358899988776 322222 2333333332 322   356889998


Q ss_pred             CCCC
Q 027618          148 DELE  151 (221)
Q Consensus       148 D~~~  151 (221)
                      +...
T Consensus       172 ~~~~  175 (232)
T d1hyqa_         172 TTLG  175 (232)
T ss_dssp             CTTT
T ss_pred             cccc
Confidence            7543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0016  Score=46.63  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.-+++.|++|+||||++..++.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            35589999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.21  E-value=0.00078  Score=50.71  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=17.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ..+.|++.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            45689999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.19  E-value=0.0015  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ...|++.|++|+|||||++.++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            35788999999999999998764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0015  Score=46.72  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.|++.||+||||||+...|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47888899999999999888644

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.002  Score=48.40  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +...+..|++-|.+|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            44556899999999999999987764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0016  Score=47.12  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++|.||+|+||||++..++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34889999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.05  E-value=0.013  Score=44.65  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027618           22 VVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~   42 (221)
                      +++.|+||+|||.+.++|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999865

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.002  Score=45.92  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      ..|++.|..||||||+.+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.04  E-value=0.0021  Score=46.05  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+|++-||+||||||....|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56788899999999999888643

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0018  Score=51.89  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..|+++||||+|||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0016  Score=51.35  Aligned_cols=19  Identities=32%  Similarity=0.552  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027618           22 VVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~   40 (221)
                      -+++|++|+|||+++.+|+
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0022  Score=45.82  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027618           20 RTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~   40 (221)
                      +.|++.|..||||||+.+.+-
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            578999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0022  Score=46.21  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++|.||+|+||||+++.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4789999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0021  Score=46.53  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.+.+++.|--|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4477889999999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0026  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027618           21 TVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .++|.||+|+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.74  E-value=0.0032  Score=49.06  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+...++++||||||||-+.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3456799999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.71  E-value=0.0036  Score=49.41  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .--|++.|++|+||||++.+++..
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhh
Confidence            356899999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0024  Score=46.26  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+.|++-|+-||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999987653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0047  Score=43.96  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++-|++-|..||||||+++.|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45688899999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.45  E-value=0.0055  Score=47.63  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~~   43 (221)
                      ....+++.||+|+|||++.++|++..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34688999999999999999986543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0059  Score=43.05  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..+.+.|++|+|||+|...++..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3467899999999999998777643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0061  Score=43.48  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .+.-|++-|..||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            346788889999999999888754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0059  Score=44.23  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++.|++=|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            46788999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.23  E-value=0.0051  Score=43.46  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027618           21 TVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        21 ~i~l~G~~g~GKSslin~l~~   41 (221)
                      .|++-|.-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999998864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.18  E-value=0.0079  Score=45.78  Aligned_cols=29  Identities=21%  Similarity=0.444  Sum_probs=21.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..+.-.++++||+|+|||.+.+.|...
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            34444447888899999999999887643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.10  E-value=0.0068  Score=43.94  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.02  E-value=0.0093  Score=41.27  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.-|++.|++|+||||+.-.+..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.02  E-value=0.0095  Score=41.25  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      +.-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            366899999999999999887653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.009  Score=42.99  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..+.+.|++|+|||+|+..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999777643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.01  Score=42.35  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++-|++-|.-||||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            467899999999999999998853

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.43  E-value=0.015  Score=39.91  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +.-|++.|++|+||||+.-.++.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999998866553

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.41  E-value=0.016  Score=43.03  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....|++.|..|.|||||...++..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4478899999999999999888754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.40  E-value=0.014  Score=42.28  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=18.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +..+.+.|++|+|||+|.-.++
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            4678999999999999986654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.21  E-value=0.013  Score=41.78  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 027618           22 VVLVGRTGNGKSATGNSILGRR   43 (221)
Q Consensus        22 i~l~G~~g~GKSslin~l~~~~   43 (221)
                      +.+.|++|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.15  E-value=0.0073  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|+++|++|+|||++++++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4689999999999999998764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.13  E-value=0.017  Score=41.64  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ++..+.+.|++|+|||+|+..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3467889999999999998666543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.97  E-value=0.019  Score=41.18  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=19.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..+.+.|++|+|||+|.-.++.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            346789999999999999866653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.80  E-value=0.017  Score=40.72  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ....+++.||+++|||+++++|+..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            4478899999999999999988755

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.016  Score=45.65  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..++++|.+|+|||++++.++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            56899999999999998776633

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.71  E-value=0.022  Score=41.94  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=18.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ++..+++.|+||+|||+|+..++
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34677899999999999875553

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.025  Score=40.73  Aligned_cols=24  Identities=13%  Similarity=0.133  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ++..+.+.|++|+|||+|.-.++.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346889999999999999877663

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.023  Score=36.45  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           17 NGERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      .++++|.+.|-+|+|||++.++|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4679999999999999999999853

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.52  E-value=0.03  Score=41.38  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           14 SPSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ........+.+.|++++|||+++++|+..
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34455678899999999999999998654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.49  E-value=0.025  Score=40.26  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=18.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ++..+.+.|++|+|||+|.-.++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            44678899999999999975443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.16  E-value=0.031  Score=36.44  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=16.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l   39 (221)
                      ..+.++.+++|+|||+++-.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHH
Confidence            366678899999999887443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.035  Score=41.40  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=23.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           15 PSNGERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      |-..+-+++++|++|+|||+|+..|+..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4456779999999999999999877653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.81  E-value=0.036  Score=42.30  Aligned_cols=24  Identities=33%  Similarity=0.374  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+|.+=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            368899999999999999999865

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.80  E-value=0.032  Score=42.51  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027618           20 RTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      .+|.|=|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            67899999999999999998643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.036  Score=40.61  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=17.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +...++.|++|+|||+|+-.|+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            3567789999999999986554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.67  E-value=0.026  Score=43.05  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILGR   42 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~~   42 (221)
                      ..+|.+=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999998754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.039  Score=40.81  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Q 027618           17 NGERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l   39 (221)
                      +.++.|.+.|+.|+||||+.-.|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHH
Confidence            34577888999999999976443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.29  E-value=0.026  Score=41.94  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCCHHHHH
Q 027618           21 TVVLVGRTGNGKSATG   36 (221)
Q Consensus        21 ~i~l~G~~g~GKSsli   36 (221)
                      .++++|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3678899999999865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.71  E-value=0.038  Score=41.43  Aligned_cols=16  Identities=19%  Similarity=0.459  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 027618           21 TVVLVGRTGNGKSATG   36 (221)
Q Consensus        21 ~i~l~G~~g~GKSsli   36 (221)
                      .++|.|++|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3778899999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.063  Score=41.36  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=16.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNS   38 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~   38 (221)
                      ....++.|++|+|||+++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            35678889999999998744

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.086  Score=38.62  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=15.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATGNSI   39 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l   39 (221)
                      .+.|++.|+.|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            356666799999999975443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.80  E-value=0.49  Score=32.79  Aligned_cols=24  Identities=4%  Similarity=-0.011  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618           18 GERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988774

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.07  E-value=0.51  Score=33.63  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             CCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+|.+++|+++.+ .+......  +.|.-.....  .+.+||+||+|+..
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~id--R~Lv~a~~~~--i~pvIvlnK~DL~~   55 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLD--RFLVLVEAND--IQPIICITKMDLIE   55 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHH--HHHHHHHTTT--CEEEEEEECGGGCC
T ss_pred             cccCEEEEEEECCCCCCCHHHHH--HHHHHHHHcC--CCEEEEEecccccc
Confidence            35688899988753 34433322  2222221222  26889999999886

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.92  E-value=0.38  Score=34.16  Aligned_cols=45  Identities=16%  Similarity=0.050  Sum_probs=26.8

Q ss_pred             CCCcEEEEEEeCCC-CCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618          102 DGIHAVLVVFSVRS-RFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (221)
Q Consensus       102 ~~~~~il~v~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (221)
                      ..+|.+++|+.+.+ .+...-. +++-.. +.  .  ..+.+||+||+|+..
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a-~~--~--~i~pvIvlnK~DL~~   55 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLA-EK--N--ELETVMVINKMDLYD   55 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHH-HH--T--TCEEEEEECCGGGCC
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH--c--CCCEEEEEeCcccCC
Confidence            34588899998863 3443321 222111 11  1  226889999999986

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.63  E-value=0.13  Score=37.25  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027618           20 RTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        20 ~~i~l~G~~g~GKSslin~l~~   41 (221)
                      ..|++.|++|+||+.+.+.|-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4578899999999999998853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.91  E-value=0.19  Score=36.99  Aligned_cols=23  Identities=22%  Similarity=0.305  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      .+-+++++|.+|+|||+|+-.++
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHH
Confidence            35588999999999999986665

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.18  Score=35.12  Aligned_cols=20  Identities=15%  Similarity=0.355  Sum_probs=16.3

Q ss_pred             eEEEEEcCC-CCCHHHHHHHH
Q 027618           20 RTVVLVGRT-GNGKSATGNSI   39 (221)
Q Consensus        20 ~~i~l~G~~-g~GKSslin~l   39 (221)
                      +++.+.|.. |+||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            678899994 99999986544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.2  Score=36.67  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=17.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027618           19 ERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~   40 (221)
                      +..+.+.|++|+|||+|+=.++
T Consensus        54 g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHH
Confidence            3677899999999999975544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.81  E-value=0.11  Score=33.20  Aligned_cols=17  Identities=35%  Similarity=0.331  Sum_probs=14.0

Q ss_pred             CeEEEEEcCCCCCHHHH
Q 027618           19 ERTVVLVGRTGNGKSAT   35 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSsl   35 (221)
                      +..+++.+++|+|||..
T Consensus         7 ~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TCEEEECCCTTSSTTTT
T ss_pred             CCcEEEEcCCCCChhHH
Confidence            46778889999999943

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.10  E-value=0.28  Score=36.26  Aligned_cols=24  Identities=13%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027618           17 NGERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        17 ~~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      ..+-+++++|++|+|||+++-.++
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHH
Confidence            345688999999999999975444

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.44  E-value=0.38  Score=32.96  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=12.8

Q ss_pred             EEEEEcCCCCCHHHHH
Q 027618           21 TVVLVGRTGNGKSATG   36 (221)
Q Consensus        21 ~i~l~G~~g~GKSsli   36 (221)
                      .+++++|||+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            3678899999999643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.10  E-value=0.43  Score=34.87  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=18.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027618           19 ERTVVLVGRTGNGKSATGNSILG   41 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSslin~l~~   41 (221)
                      +..+-+.|++++|||+|+-.++.
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHH
Confidence            35778999999999999866654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.60  E-value=0.17  Score=35.09  Aligned_cols=18  Identities=22%  Similarity=0.329  Sum_probs=14.7

Q ss_pred             CeEEEEEcCCCCCHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATG   36 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSsli   36 (221)
                      +..+++.+|+|+|||...
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            356889999999999753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.24  E-value=0.61  Score=34.03  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027618           18 GERTVVLVGRTGNGKSATGNSIL   40 (221)
Q Consensus        18 ~~~~i~l~G~~g~GKSslin~l~   40 (221)
                      .+..+.+.|++|+|||+|+-.++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHH
Confidence            34677899999999999975544

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.00  E-value=0.21  Score=35.64  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=14.6

Q ss_pred             CeEEEEEcCCCCCHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATG   36 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSsli   36 (221)
                      +..+++++|||+|||...
T Consensus        58 g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TCCEECCCCBTSCSHHHH
T ss_pred             CCCEEEEecCCChHHHHH
Confidence            356788999999999653

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=0.56  Score=34.97  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 027618           20 RTVVLVGRTGNGKSATG   36 (221)
Q Consensus        20 ~~i~l~G~~g~GKSsli   36 (221)
                      -.-+++|-+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            45689999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.07  E-value=0.54  Score=35.14  Aligned_cols=18  Identities=28%  Similarity=0.529  Sum_probs=15.0

Q ss_pred             CeEEEEEcCCCCCHHHHH
Q 027618           19 ERTVVLVGRTGNGKSATG   36 (221)
Q Consensus        19 ~~~i~l~G~~g~GKSsli   36 (221)
                      +..-+++|-+|.|||||-
T Consensus        14 ~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CCEEEEEECTTSCHHHHT
T ss_pred             CCEEEEEccCCCCccccc
Confidence            356689999999999974