Citrus Sinensis ID: 027619
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 221 | ||||||
| 224136704 | 239 | predicted protein [Populus trichocarpa] | 0.972 | 0.899 | 0.585 | 2e-69 | |
| 118489030 | 239 | unknown [Populus trichocarpa x Populus d | 0.972 | 0.899 | 0.581 | 2e-68 | |
| 225458573 | 242 | PREDICTED: uncharacterized protein At1g4 | 0.972 | 0.888 | 0.538 | 5e-65 | |
| 255538368 | 238 | conserved hypothetical protein [Ricinus | 0.954 | 0.886 | 0.561 | 1e-61 | |
| 297852338 | 260 | hypothetical protein ARALYDRAFT_473889 [ | 0.864 | 0.734 | 0.520 | 3e-55 | |
| 18401719 | 257 | succinate dehydrogenase 5 [Arabidopsis t | 0.859 | 0.739 | 0.520 | 4e-55 | |
| 351726377 | 225 | uncharacterized protein LOC100527337 [Gl | 0.701 | 0.688 | 0.593 | 2e-53 | |
| 449470049 | 241 | PREDICTED: uncharacterized protein At1g4 | 0.963 | 0.883 | 0.491 | 4e-53 | |
| 351722341 | 228 | uncharacterized protein LOC100527668 [Gl | 0.932 | 0.903 | 0.495 | 9e-53 | |
| 388502854 | 238 | unknown [Medicago truncatula] | 0.723 | 0.672 | 0.542 | 4e-49 |
| >gi|224136704|ref|XP_002326924.1| predicted protein [Populus trichocarpa] gi|118481849|gb|ABK92861.1| unknown [Populus trichocarpa] gi|222835239|gb|EEE73674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/234 (58%), Positives = 161/234 (68%), Gaps = 19/234 (8%)
Query: 1 MEKIAVMSVRSIRRAACVRSSIIAAANNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCR 60
MEK+ + R+I RAAC+ SS AA + LRH +SRSLF++S+P+ S K IP D R
Sbjct: 1 MEKMGAL--RTIYRAACLGSSRSAAISQSQLRHHLASRSLFTVSAPSVSTTPKRIPCDFR 58
Query: 61 SSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120
S MS+G +RSFSEDV H P I+DPEI FKDLMA +W ELP +V+ DAK ALS+N D
Sbjct: 59 SPFAMSLGSSRSFSEDVTHFPDIKDPEILNVFKDLMATNWDELPNAVVSDAKKALSKNTD 118
Query: 121 DKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS-----------------VYQR 163
DK GQE+LKNVF AAEAVEEF G IM++KME DD IGLS YQR
Sbjct: 119 DKVGQEILKNVFRAAEAVEEFGGKIMSLKMELDDIIGLSGENVKPLPELHANAIRTFYQR 178
Query: 164 YATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHCG 217
YA YLD+FGP E YLRKKVETELGS+MI+LKMRC GLG+EWGKV G G
Sbjct: 179 YAAYLDSFGPGEGYLRKKVETELGSRMIYLKMRCCGLGAEWGKVTVLGTSGLAG 232
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489030|gb|ABK96322.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
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| >gi|225458573|ref|XP_002284591.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial [Vitis vinifera] gi|147811478|emb|CAN63226.1| hypothetical protein VITISV_002665 [Vitis vinifera] gi|302142337|emb|CBI19540.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255538368|ref|XP_002510249.1| conserved hypothetical protein [Ricinus communis] gi|223550950|gb|EEF52436.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297852338|ref|XP_002894050.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata] gi|297339892|gb|EFH70309.1| hypothetical protein ARALYDRAFT_473889 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18401719|ref|NP_564506.1| succinate dehydrogenase 5 [Arabidopsis thaliana] gi|25091506|sp|Q9SX77.1|UMP6_ARATH RecName: Full=Uncharacterized protein At1g47420, mitochondrial; Flags: Precursor gi|5668814|gb|AAD46040.1|AC007519_25 ESTs gb|H36253 and gb|AA04251 come from this gene [Arabidopsis thaliana] gi|12744995|gb|AAK06877.1|AF344326_1 unknown protein [Arabidopsis thaliana] gi|14334512|gb|AAK59453.1| unknown protein [Arabidopsis thaliana] gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis thaliana] gi|17104551|gb|AAL34164.1| unknown protein [Arabidopsis thaliana] gi|21536627|gb|AAM60959.1| unknown [Arabidopsis thaliana] gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis thaliana] gi|332194047|gb|AEE32168.1| succinate dehydrogenase 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|351726377|ref|NP_001238404.1| uncharacterized protein LOC100527337 [Glycine max] gi|255632117|gb|ACU16411.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|449470049|ref|XP_004152731.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus] gi|449496011|ref|XP_004160011.1| PREDICTED: uncharacterized protein At1g47420, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|351722341|ref|NP_001235705.1| uncharacterized protein LOC100527668 [Glycine max] gi|255632912|gb|ACU16810.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|388502854|gb|AFK39493.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 221 | ||||||
| TAIR|locus:2015428 | 257 | SDH5 "AT1G47420" [Arabidopsis | 0.461 | 0.396 | 0.627 | 1.3e-49 |
| TAIR|locus:2015428 SDH5 "AT1G47420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 330 (121.2 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 64/102 (62%), Positives = 79/102 (77%)
Query: 58 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR 117
D + M +G R FSEDV+HMP + D ++ AFKDLMAADW ELP++V+ DAK+A+S+
Sbjct: 74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISK 133
Query: 118 NNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS 159
N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+S
Sbjct: 134 NTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMS 175
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00400264 | SubName- Full=Putative uncharacterized protein; (240 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 221 | |||
| pfam14290 | 238 | pfam14290, DUF4370, Domain of unknown function (DU | 1e-104 | |
| PLN02749 | 173 | PLN02749, PLN02749, Uncharacterized protein At1g47 | 3e-79 |
| >gnl|CDD|222654 pfam14290, DUF4370, Domain of unknown function (DUF4370) | Back alignment and domain information |
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Score = 300 bits (770), Expect = e-104
Identities = 137/226 (60%), Positives = 161/226 (71%), Gaps = 24/226 (10%)
Query: 1 MEKIAVMSVRSIRRAACVRSSIIAAANNHH--LRHLSSSRSLFSLSSPAASIPSKSIPFD 58
MEK+ + +RS+ R+A RSS +AA+ H LRH SSRSLF L+SPA+ + D
Sbjct: 1 MEKM--VLLRSLFRSAPFRSSRSSAASQGHHQLRHHLSSRSLFPLASPASP---SRLSSD 55
Query: 59 CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRN 118
CR MS G R FSEDV H+P I+DPEI+ AFKDLMAA W ELP SV+ DAK ALS+N
Sbjct: 56 CRYPFAMSWGSRRFFSEDVTHLPAIKDPEIENAFKDLMAASWDELPDSVVSDAKKALSKN 115
Query: 119 NDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS-----------------VY 161
DDKAGQE LKNVF AAEAVEEF GI++++KME DD IGLS Y
Sbjct: 116 TDDKAGQEALKNVFRAAEAVEEFGGILVSLKMELDDLIGLSGENVKPLPDYIENALRTAY 175
Query: 162 QRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKV 207
QRY+TYLD+FGP+E YLRKKVETELG+KMI LKMRC+GLGSEWGKV
Sbjct: 176 QRYSTYLDSFGPEEGYLRKKVETELGTKMIHLKMRCSGLGSEWGKV 221
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Length = 238 |
| >gnl|CDD|178350 PLN02749, PLN02749, Uncharacterized protein At1g47420 | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 221 | |||
| PF14290 | 239 | DUF4370: Domain of unknown function (DUF4370) | 100.0 | |
| PLN02749 | 173 | Uncharacterized protein At1g47420 | 100.0 |
| >PF14290 DUF4370: Domain of unknown function (DUF4370) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-111 Score=727.05 Aligned_cols=216 Identities=62% Similarity=0.973 Sum_probs=205.5
Q ss_pred CchhhhHHHHHHHHHHhhhhhhHHHh--hhhhhhhhhccccccccCCCCCCCCCCCCCCCcCCcccccccccccccccCC
Q 027619 1 MEKIAVMSVRSIRRAACVRSSIIAAA--NNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA 78 (221)
Q Consensus 1 mek~~m~~lrs~~r~a~~~s~~~~~~--~~~~~~h~s~~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~~~~R~fS~d~~ 78 (221)
||| ||+.||++||++|++|++.++. .+|+++|..+.+++++++++.+ +. ++++||++||++|||++|+||+|++
T Consensus 1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~--~~-~~~s~~~~~~a~s~~~~R~fS~d~~ 76 (239)
T PF14290_consen 1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPSS--RN-RISSDCGGPFAMSWGSRRFFSEDVS 76 (239)
T ss_pred Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCccc--cc-cccccccCCcccccchhhhcccccc
Confidence 887 5999999999999999987555 3377788558999999988873 33 8899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL 158 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gl 158 (221)
|||+|+||||++|||||||+||+|||++||++|||||||||||+||||||+||||||||||||||+|++|||||||||||
T Consensus 77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl 156 (239)
T PF14290_consen 77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL 156 (239)
T ss_pred cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-----------------HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEeeccccccccc
Q 027619 159 S-----------------VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHCGILA 220 (221)
Q Consensus 159 s-----------------~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~sgsy~ 220 (221)
| +|+||++|||||||||+|||||||+|||+|||||||||||||||||||||||||||||||.
T Consensus 157 sGEnv~PLP~~~~~Al~t~y~rY~~YL~sFgp~E~yLrKKVE~ELGtkmi~lKmRcsGlg~eWgkvtllGTSGlsGSYv 235 (239)
T PF14290_consen 157 SGENVKPLPDYIENALRTAYKRYMTYLDSFGPDEHYLRKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLGTSGLSGSYV 235 (239)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhHHHHhhhhcCCCcccceeeEeecCcCccchh
Confidence 9 9999999999999999999999999999999999999999999999999999999999995
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| >PLN02749 Uncharacterized protein At1g47420 | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00