Citrus Sinensis ID: 027620

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
ccccccccccccccccEEEEccccccccccHHHcHHHHHHcccccEEEcEEEccccccccccEEEEccHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHcccccEEEcccHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEccEEccccEEEEEEEcccccccEEEccccc
cccccHHccccccccEEEEEEEEEccccccHHHHHHHHHHcccEEEEEEEEEEccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHccHHHccEEcccHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEcccccccEEEEEEccccEccccccEcEEEc
mappilslalpsetgrvlSIQSHTvqgyvgnksavfplqllgydvdpihsvqfsnhtgyptfkgqvlnGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRsinpnliyvcdpvmgdegklyvpselvsvYREKvvpvasmltpnqfeaeqltgfrigseadGREACKILHAAGPAKVVITSINIdgnlfligshqkekvgplcvkglwf
mappilslALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLigshqkekvgplcvkglwf
MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
**************GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLW*
**************GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
*****LSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLWF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query221 2.2.26 [Sep-21-2011]
Q8W1X2309 Pyridoxal kinase OS=Arabi yes no 0.945 0.676 0.875 1e-105
O46560322 Pyridoxal kinase OS=Sus s yes no 0.819 0.562 0.589 6e-58
P82197312 Pyridoxal kinase OS=Ovis N/A no 0.832 0.589 0.569 9e-58
Q0II59312 Pyridoxal kinase OS=Bos t yes no 0.832 0.589 0.558 4e-57
Q8K183312 Pyridoxal kinase OS=Mus m yes no 0.882 0.625 0.534 4e-56
O00764312 Pyridoxal kinase OS=Homo yes no 0.895 0.634 0.502 4e-56
O35331312 Pyridoxal kinase OS=Rattu yes no 0.882 0.625 0.529 6e-56
Q55EK9302 Pyridoxal kinase OS=Dicty yes no 0.859 0.629 0.541 6e-51
O01824321 Putative pyridoxal kinase yes no 0.805 0.554 0.531 3e-48
O14242309 Putative pyridoxal kinase yes no 0.864 0.618 0.436 7e-40
>sp|Q8W1X2|PDXK_ARATH Pyridoxal kinase OS=Arabidopsis thaliana GN=PK PE=1 SV=2 Back     alignment and function desciption
 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/209 (87%), Positives = 196/209 (93%)

Query: 2   APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPT 61
            PP+LSLALPS+TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI+SVQFSNHTGYPT
Sbjct: 3   TPPVLSLALPSDTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPT 62

Query: 62  FKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYV 121
           FKGQVLNGQQLCDLIEGLEAN+LL+YTH+LTGYIGSVSFL+TIL+V+ KLRS+NPNL YV
Sbjct: 63  FKGQVLNGQQLCDLIEGLEANDLLFYTHVLTGYIGSVSFLDTILEVINKLRSVNPNLTYV 122

Query: 122 CDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181
           CDPVMGDEGKLYVP ELV VYREKVVP+ASMLTPNQFEAE+LTG RI SE DGREAC IL
Sbjct: 123 CDPVMGDEGKLYVPEELVHVYREKVVPLASMLTPNQFEAEKLTGLRINSEEDGREACAIL 182

Query: 182 HAAGPAKVVITSINIDGNLFLIGSHQKEK 210
           HAAGP+KVVITSI I G L LIGSHQKEK
Sbjct: 183 HAAGPSKVVITSITIGGILLLIGSHQKEK 211
Catalyzes the transfer of a phosphate group from ATP to the 5-hydroxylmethyl group of pyridoxal to form the biologically active pyridoxal phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 5
>sp|O46560|PDXK_PIG Pyridoxal kinase OS=Sus scrofa GN=PDXK PE=1 SV=1 Back     alignment and function description
>sp|P82197|PDXK_SHEEP Pyridoxal kinase OS=Ovis aries GN=PDXK PE=1 SV=1 Back     alignment and function description
>sp|Q0II59|PDXK_BOVIN Pyridoxal kinase OS=Bos taurus GN=PDXK PE=2 SV=1 Back     alignment and function description
>sp|Q8K183|PDXK_MOUSE Pyridoxal kinase OS=Mus musculus GN=Pdxk PE=1 SV=1 Back     alignment and function description
>sp|O00764|PDXK_HUMAN Pyridoxal kinase OS=Homo sapiens GN=PDXK PE=1 SV=1 Back     alignment and function description
>sp|O35331|PDXK_RAT Pyridoxal kinase OS=Rattus norvegicus GN=Pdxk PE=1 SV=1 Back     alignment and function description
>sp|Q55EK9|PDXK_DICDI Pyridoxal kinase OS=Dictyostelium discoideum GN=pykA PE=1 SV=1 Back     alignment and function description
>sp|O01824|PDXK_CAEEL Putative pyridoxal kinase OS=Caenorhabditis elegans GN=F57C9.1 PE=2 SV=2 Back     alignment and function description
>sp|O14242|YELB_SCHPO Putative pyridoxal kinase C6F6.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.11c PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
255562276293 pyridoxine kinase, putative [Ricinus com 0.963 0.726 0.882 1e-105
357492207 350 Pyridoxal kinase [Medicago truncatula] g 0.963 0.608 0.873 1e-104
217074138 350 unknown [Medicago truncatula] 0.963 0.608 0.873 1e-104
388508136308 unknown [Medicago truncatula] 0.963 0.691 0.873 1e-104
357492209308 Pyridoxal kinase [Medicago truncatula] g 0.963 0.691 0.873 1e-104
296087176 342 unnamed protein product [Vitis vinifera] 0.945 0.611 0.880 1e-104
359488203309 PREDICTED: pyridoxal kinase-like [Vitis 0.945 0.676 0.880 1e-104
351721092308 pyridoxal kinase [Glycine max] gi|681318 0.963 0.691 0.882 1e-103
145334663309 Pyridoxal kinase [Arabidopsis thaliana] 0.945 0.676 0.875 1e-103
356539850 341 PREDICTED: pyridoxal kinase-like [Glycin 0.963 0.624 0.877 1e-103
>gi|255562276|ref|XP_002522146.1| pyridoxine kinase, putative [Ricinus communis] gi|223538745|gb|EEF40346.1| pyridoxine kinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/213 (88%), Positives = 198/213 (92%)

Query: 1   MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYP 60
           MAPPILSLALPS TGRVLSIQSHTVQGYVGNKSAVFPLQ+LGYDVDPI+SVQFSNHTGYP
Sbjct: 1   MAPPILSLALPSGTGRVLSIQSHTVQGYVGNKSAVFPLQILGYDVDPINSVQFSNHTGYP 60

Query: 61  TFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY 120
           + KGQVLNGQQL DLIEGLE N+LLYYTHLLTGYIGSVSFLNTIL+VV KLRSINP L Y
Sbjct: 61  SVKGQVLNGQQLWDLIEGLEGNDLLYYTHLLTGYIGSVSFLNTILEVVNKLRSINPKLTY 120

Query: 121 VCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180
           VCDPVMGDEGKLYVP ELV+VYREKVVPVASMLTPNQFEAEQLTGFRI +E DGREAC  
Sbjct: 121 VCDPVMGDEGKLYVPPELVAVYREKVVPVASMLTPNQFEAEQLTGFRIVTEKDGREACNT 180

Query: 181 LHAAGPAKVVITSINIDGNLFLIGSHQKEKVGP 213
           LHAAGP+KV+ITSINIDGNL L+GSHQKEK  P
Sbjct: 181 LHAAGPSKVIITSINIDGNLLLVGSHQKEKDQP 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357492207|ref|XP_003616392.1| Pyridoxal kinase [Medicago truncatula] gi|355517727|gb|AES99350.1| Pyridoxal kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074138|gb|ACJ85429.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388508136|gb|AFK42134.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357492209|ref|XP_003616393.1| Pyridoxal kinase [Medicago truncatula] gi|355517728|gb|AES99351.1| Pyridoxal kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|296087176|emb|CBI33550.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488203|ref|XP_002271493.2| PREDICTED: pyridoxal kinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|351721092|ref|NP_001236942.1| pyridoxal kinase [Glycine max] gi|68131817|gb|AAY85187.1| pyridoxal kinase [Glycine max] Back     alignment and taxonomy information
>gi|145334663|ref|NP_001078677.1| Pyridoxal kinase [Arabidopsis thaliana] gi|26397694|sp|Q8W1X2.2|PDXK_ARATH RecName: Full=Pyridoxal kinase; AltName: Full=Protein SALT OVERLY SENSITIVE 4; AltName: Full=Pyridoxal kinase-like protein SOS4; AltName: Full=Pyridoxine kinase gi|15277978|gb|AAK94020.1|AF400125_1 pyridoxal kinase-like protein SOS4 [Arabidopsis thaliana] gi|24111259|gb|AAL57364.2|AF404865_1 pyridoxal kinase [Arabidopsis thaliana] gi|9758485|dbj|BAB09031.1| pyridoxal kinase-like protein [Arabidopsis thaliana] gi|21536661|gb|AAM60993.1| pyridoxal kinase-like protein [Arabidopsis thaliana] gi|22530990|gb|AAM96999.1| pyridoxal kinase-like protein [Arabidopsis thaliana] gi|31711796|gb|AAP68254.1| At5g37850 [Arabidopsis thaliana] gi|332006857|gb|AED94240.1| Pyridoxal kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356539850|ref|XP_003538406.1| PREDICTED: pyridoxal kinase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
FB|FBgn0085484304 CG34455 [Drosophila melanogast 0.923 0.671 0.543 2.6e-54
ZFIN|ZDB-GENE-030131-8376 340 pdxka "pyridoxal (pyridoxine, 0.886 0.576 0.527 4.3e-54
ZFIN|ZDB-GENE-030616-521319 pdxkb "pyridoxal (pyridoxine, 0.850 0.589 0.565 8.9e-54
UNIPROTKB|O46560322 PDXK "Pyridoxal kinase" [Sus s 0.819 0.562 0.589 1.5e-53
UNIPROTKB|Q0II59312 PDXK "Pyridoxal kinase" [Bos t 0.832 0.589 0.558 1e-52
UNIPROTKB|O00764312 PDXK "Pyridoxal kinase" [Homo 0.886 0.628 0.517 3.5e-52
RGD|621324312 Pdxk "pyridoxal (pyridoxine, v 0.882 0.625 0.534 5.6e-52
UNIPROTKB|O35331312 Pdxk "Pyridoxal kinase" [Rattu 0.882 0.625 0.534 5.6e-52
MGI|MGI:1351869312 Pdxk "pyridoxal (pyridoxine, v 0.882 0.625 0.534 7.2e-52
RGD|1566085312 RGD1566085 "similar to pyridox 0.882 0.625 0.529 8.3e-51
FB|FBgn0085484 CG34455 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/206 (54%), Positives = 147/206 (71%)

Query:     9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLN 68
             A  ++  RVLSIQSH V GYVGNK A +PLQLLG+DVDP++SVQFSNHTGY TFKG V N
Sbjct:     4 ATNADIKRVLSIQSHVVHGYVGNKVATYPLQLLGFDVDPLNSVQFSNHTGYKTFKGPVSN 63

Query:    69 GQQLCDLIEGLEANNLL-YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127
              ++L  + EGLE N LL  Y+HLLTGYIG+  FL  +  +++KLR  NP L+YVCDPVMG
Sbjct:    64 EKELATIFEGLEENELLPLYSHLLTGYIGNPLFLRQVGHILKKLRQANPGLVYVCDPVMG 123

Query:   128 DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187
             D G+LYVP EL+ VYR++++P+A ++TPNQFE E LT   + SEA   EA +  H  G  
Sbjct:   124 DNGQLYVPKELLPVYRDEIIPLADIITPNQFEVELLTEKEVRSEAAVWEAMEWFHQRGIK 183

Query:   188 KVVITSINIDGNLFLIGSHQKEKVGP 213
              VVI+S ++ G   ++ +   ++ GP
Sbjct:   184 TVVISSSDL-GQPGVLRAFLSQQNGP 208
GO:0008478 "pyridoxal kinase activity" evidence=IEA
GO:0009443 "pyridoxal 5'-phosphate salvage" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISS
ZFIN|ZDB-GENE-030131-8376 pdxka "pyridoxal (pyridoxine, vitamin B6) kinase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-521 pdxkb "pyridoxal (pyridoxine, vitamin B6) kinase b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O46560 PDXK "Pyridoxal kinase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0II59 PDXK "Pyridoxal kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O00764 PDXK "Pyridoxal kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621324 Pdxk "pyridoxal (pyridoxine, vitamin B6) kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O35331 Pdxk "Pyridoxal kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1351869 Pdxk "pyridoxal (pyridoxine, vitamin B6) kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1566085 RGD1566085 "similar to pyridoxal (pyridoxine, vitamin B6) kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W1X2PDXK_ARATH2, ., 7, ., 1, ., 3, 50.87550.94570.6763yesno
O00764PDXK_HUMAN2, ., 7, ., 1, ., 3, 50.50240.89590.6346yesno
Q55EK9PDXK_DICDI2, ., 7, ., 1, ., 3, 50.54120.85970.6291yesno
Q8K183PDXK_MOUSE2, ., 7, ., 1, ., 3, 50.53430.88230.625yesno
O35331PDXK_RAT2, ., 7, ., 1, ., 3, 50.52940.88230.625yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.10.976
3rd Layer2.7.1.350.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SOS4
SOS4 (SALT OVERLY SENSITIVE 4); kinase/ pyridoxal kinase; Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+. ; Catalyzes the transfer of a phosphate group from ATP to the 5-hydroxylmethyl group of pyridoxal to form the biologically active pyridoxal phosphate (343 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
PDX2
PDX2 (PYRIDOXINE BIOSYNTHESIS 2); glutaminase/ glutaminyl-tRNA synthase (glutamine-hydrolyzing) [...] (255 aa)
•    •• 0.985
RSR4
RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization; Encodes [...] (309 aa)
•    •• 0.979
PDX1.2
A37; protein heterodimerization; Encodes a protein with pyridoxal phosphate synthase activity w [...] (314 aa)
•    •• 0.974
PDX1.1
ATPDX1.1 (pyridoxine biosynthesis 1.1); protein heterodimerization; Encodes a protein predicted [...] (309 aa)
•    •• 0.970
ATPPOX
ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxid [...] (530 aa)
•    •• 0.959
SOS5
SOS5 (salt overly sensitive 5); polysaccharide binding / protein binding; Isolated in a screen [...] (420 aa)
      • 0.679
AT5G58730
pfkB-type carbohydrate kinase family protein; pfkB-type carbohydrate kinase family protein; FUN [...] (353 aa)
      • 0.677
SNZ
SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor; Encodes a AP2 domain transcription fa [...] (325 aa)
      • 0.675
SOS3
SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonin [...] (222 aa)
      • 0.659
GLR3.3
ATGLR3.3; intracellular ligand-gated ion channel; member of Putative ligand-gated ion channel s [...] (933 aa)
      • 0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
PLN02978308 PLN02978, PLN02978, pyridoxal kinase 1e-155
cd01173254 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal 6e-92
PTZ00344296 PTZ00344, PTZ00344, pyridoxal kinase; Provisional 9e-92
TIGR00687286 TIGR00687, pyridox_kin, pyridoxal kinase 5e-76
COG2240281 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine k 6e-71
PRK05756286 PRK05756, PRK05756, pyridoxamine kinase; Validated 4e-67
PRK08176281 PRK08176, pdxK, pyridoxal-pyridoxamine kinase/hydr 2e-29
pfam08543246 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine k 2e-18
cd01169242 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-me 5e-17
TIGR00097254 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine k 2e-16
COG0351263 COG0351, ThiD, Hydroxymethylpyrimidine/phosphometh 2e-14
PRK06427266 PRK06427, PRK06427, bifunctional hydroxy-methylpyr 2e-13
PRK08573 448 PRK08573, PRK08573, phosphomethylpyrimidine kinase 2e-12
PRK12412268 PRK12412, PRK12412, pyridoxal kinase; Reviewed 6e-12
PRK07105284 PRK07105, PRK07105, pyridoxamine kinase; Validated 3e-11
PLN02898 502 PLN02898, PLN02898, HMP-P kinase/thiamin-monophosp 3e-09
PRK11142306 PRK11142, PRK11142, ribokinase; Provisional 1e-08
cd00287196 cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup 2e-08
PRK12616270 PRK12616, PRK12616, pyridoxal kinase; Reviewed 3e-08
cd01174292 cd01174, ribokinase, Ribokinase catalyses the phos 1e-07
pfam00294298 pfam00294, PfkB, pfkB family carbohydrate kinase 3e-06
TIGR02152293 TIGR02152, D_ribokin_bact, ribokinase 4e-06
PRK12413253 PRK12413, PRK12413, phosphomethylpyrimidine kinase 1e-05
PTZ00347504 PTZ00347, PTZ00347, phosphomethylpyrimidine kinase 0.002
>gnl|CDD|215529 PLN02978, PLN02978, pyridoxal kinase Back     alignment and domain information 
 Score =  432 bits (1113), Expect = e-155
 Identities = 176/210 (83%), Positives = 194/210 (92%)

Query: 1   MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYP 60
           MAPP+LSLALPS TGRVLSIQSHTV GYVGNKSAVFPLQLLG+DVDPI+SVQFSNHTGYP
Sbjct: 1   MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYP 60

Query: 61  TFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY 120
           TFKGQVL+G+QL  LIEGLEAN LL+YTHLLTGYIGSVSFL T+L+VV+KLRS+NPNL Y
Sbjct: 61  TFKGQVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTY 120

Query: 121 VCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180
           VCDPV+GDEGKLYVP ELV VYREKVVP+A+MLTPNQFEAEQLTG RI +E D REAC I
Sbjct: 121 VCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGIRIVTEEDAREACAI 180

Query: 181 LHAAGPAKVVITSINIDGNLFLIGSHQKEK 210
           LHAAGP+KVVITSI+IDG L L+GSH+KEK
Sbjct: 181 LHAAGPSKVVITSIDIDGKLLLVGSHRKEK 210

Length = 308
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>gnl|CDD|240372 PTZ00344, PTZ00344, pyridoxal kinase; Provisional Back     alignment and domain information
>gnl|CDD|211599 TIGR00687, pyridox_kin, pyridoxal kinase Back     alignment and domain information
>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|235592 PRK05756, PRK05756, pyridoxamine kinase; Validated Back     alignment and domain information
>gnl|CDD|181269 PRK08176, pdxK, pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed Back     alignment and domain information
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase Back     alignment and domain information
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>gnl|CDD|232823 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine kinase Back     alignment and domain information
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|180561 PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>gnl|CDD|236297 PRK08573, PRK08573, phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>gnl|CDD|183512 PRK12412, PRK12412, pyridoxal kinase; Reviewed Back     alignment and domain information
>gnl|CDD|180840 PRK07105, PRK07105, pyridoxamine kinase; Validated Back     alignment and domain information
>gnl|CDD|215486 PLN02898, PLN02898, HMP-P kinase/thiamin-monophosphate pyrophosphorylase Back     alignment and domain information
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional Back     alignment and domain information
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>gnl|CDD|183624 PRK12616, PRK12616, pyridoxal kinase; Reviewed Back     alignment and domain information
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase Back     alignment and domain information
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase Back     alignment and domain information
>gnl|CDD|183513 PRK12413, PRK12413, phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>gnl|CDD|240375 PTZ00347, PTZ00347, phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 221
PLN02978308 pyridoxal kinase 99.97
KOG2599308 consensus Pyridoxal/pyridoxine/pyridoxamine kinase 99.97
COG0351263 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi 99.96
COG2240281 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe 99.96
PRK08176281 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy 99.95
PRK05756286 pyridoxamine kinase; Validated 99.95
PTZ00344296 pyridoxal kinase; Provisional 99.93
TIGR00687286 pyridox_kin pyridoxal kinase. ThiD and related pro 99.93
KOG2598 523 consensus Phosphomethylpyrimidine kinase [Coenzyme 99.93
PRK07105284 pyridoxamine kinase; Validated 99.92
cd01173254 pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla 99.92
TIGR00097254 HMP-P_kinase phosphomethylpyrimidine kinase. This 99.91
PRK12412268 pyridoxal kinase; Reviewed 99.91
PRK12616270 pyridoxal kinase; Reviewed 99.9
PTZ00493 321 phosphomethylpyrimidine kinase; Provisional 99.9
PF08543246 Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte 99.9
PRK06427266 bifunctional hydroxy-methylpyrimidine kinase/ hydr 99.9
cd01169242 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim 99.89
PTZ00347504 phosphomethylpyrimidine kinase; Provisional 99.88
PRK08573 448 phosphomethylpyrimidine kinase; Provisional 99.87
PRK14713 530 multifunctional hydroxymethylpyrimidine phosphokin 99.86
PLN02898 502 HMP-P kinase/thiamin-monophosphate pyrophosphoryla 99.85
PRK12413253 phosphomethylpyrimidine kinase; Provisional 99.84
PRK09517 755 multifunctional thiamine-phosphate pyrophosphoryla 99.83
COG1105310 FruK Fructose-1-phosphate kinase and related fruct 99.8
PTZ00292326 ribokinase; Provisional 99.46
cd01174292 ribokinase Ribokinase catalyses the phosphorylatio 99.46
PRK11142306 ribokinase; Provisional 99.45
PRK10294309 6-phosphofructokinase 2; Provisional 99.42
TIGR03828304 pfkB 1-phosphofructokinase. This enzyme acts in co 99.41
PRK09513312 fruK 1-phosphofructokinase; Provisional 99.38
cd01166294 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho 99.38
PLN02967 581 kinase 99.37
PTZ00247345 adenosine kinase; Provisional 99.37
PLN02341 470 pfkB-type carbohydrate kinase family protein 99.37
cd01172304 RfaE_like RfaE encodes a bifunctional ADP-heptose 99.37
PLN02543496 pfkB-type carbohydrate kinase family protein 99.35
TIGR03168303 1-PFK hexose kinase, 1-phosphofructokinase family. 99.34
cd01164289 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 99.34
TIGR02198315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 99.34
PRK09850313 pseudouridine kinase; Provisional 99.33
TIGR02152293 D_ribokin_bact ribokinase. This model describes ri 99.33
cd01168312 adenosine_kinase Adenosine kinase (AK) catalyzes t 99.31
PRK09954362 putative kinase; Provisional 99.31
PRK13508309 tagatose-6-phosphate kinase; Provisional 99.3
TIGR01231309 lacC tagatose-6-phosphate kinase. This enzyme is p 99.29
cd01941288 YeiC_kinase_like YeiC-like sugar kinase. Found in 99.24
PLN02323330 probable fructokinase 99.23
COG0524311 RbsK Sugar kinases, ribokinase family [Carbohydrat 99.21
PRK15074 434 inosine/guanosine kinase; Provisional 99.21
PLN02813426 pfkB-type carbohydrate kinase family protein 99.17
PRK11316 473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.17
PF00294301 PfkB: pfkB family carbohydrate kinase; InterPro: I 99.16
cd01167295 bac_FRK Fructokinases (FRKs) mainly from bacteria 99.16
PLN02548332 adenosine kinase 99.16
PRK09434304 aminoimidazole riboside kinase; Provisional 99.15
TIGR00196272 yjeF_cterm yjeF C-terminal region, hydroxyethylthi 99.14
cd01944289 YegV_kinase_like YegV-like sugar kinase. Found onl 99.13
cd00287196 ribokinase_pfkB_like ribokinase/pfkB superfamily: 99.13
cd01171254 YXKO-related B.subtilis YXKO protein of unknown fu 99.09
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.07
cd01946277 ribokinase_group_C Ribokinase-like subgroup C. Fou 99.02
cd01943328 MAK32 MAK32 kinase. MAK32 is a protein found prima 98.99
PLN02379367 pfkB-type carbohydrate kinase family protein 98.96
cd01940264 Fructoselysine_kinase_like Fructoselysine kinase-l 98.93
cd01945284 ribokinase_group_B Ribokinase-like subgroup B. Fou 98.84
KOG2855330 consensus Ribokinase [Carbohydrate transport and m 98.8
cd01170242 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T 98.78
TIGR00694249 thiM hydroxyethylthiazole kinase. This model repre 98.76
cd01942279 ribokinase_group_A Ribokinase-like subgroup A. Fou 98.7
cd01939290 Ketohexokinase Ketohexokinase (fructokinase, KHK) 98.61
PRK09355263 hydroxyethylthiazole kinase; Validated 98.59
PRK09813260 fructoselysine 6-kinase; Provisional 98.5
cd01947265 Guanosine_kinase_like Guanosine kinase-like sugar 98.45
KOG2854343 consensus Possible pfkB family carbohydrate kinase 98.0
cd01937254 ribokinase_group_D Ribokinase-like subgroup D. Fou 97.91
COG2145265 ThiM Hydroxyethylthiazole kinase, sugar kinase fam 97.42
PF02110246 HK: Hydroxyethylthiazole kinase family; InterPro: 97.24
PLN02630335 pfkB-type carbohydrate kinase family protein 97.02
PRK10565508 putative carbohydrate kinase; Provisional 96.05
KOG3974306 consensus Predicted sugar kinase [Carbohydrate tra 95.16
PRK14039453 ADP-dependent glucokinase; Provisional 94.73
PRK03979463 ADP-specific phosphofructokinase; Provisional 93.82
PF01256242 Carb_kinase: Carbohydrate kinase; InterPro: IPR000 93.35
TIGR02045446 P_fruct_ADP ADP-specific phosphofructokinase. Phos 92.45
COG0541 451 Ffh Signal recognition particle GTPase [Intracellu 92.12
PRK14038453 ADP-dependent glucokinase; Provisional 91.2
PRK10076213 pyruvate formate lyase II activase; Provisional 91.06
COG0063284 Predicted sugar kinase [Carbohydrate transport and 90.39
PRK04165 450 acetyl-CoA decarbonylase/synthase complex subunit 85.74
PF04587444 ADP_PFK_GK: ADP-specific Phosphofructokinase/Gluco 83.52
>PLN02978 pyridoxal kinase Back     alignment and domain information 
Probab=99.97  E-value=7.3e-30  Score=220.74  Aligned_cols=206  Identities=84%  Similarity=1.314  Sum_probs=184.6

Q ss_pred             CCCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHH
Q 027620            1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~   80 (221)
                      |+||.+.......+++||+|+++|..|++|+.+..-.|+.+|+++..++|+..+|++||..+.|..++.++++.+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~   80 (308)
T PLN02978          1 MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLE   80 (308)
T ss_pred             CCcchhccccCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHH
Confidence            79999999999999999999999999999996655569999999999999988899999888889999889999999998


Q ss_pred             hcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHH
Q 027620           81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA  160 (221)
Q Consensus        81 ~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea  160 (221)
                      ....+.++++++||+++....+.+.++++.+++.++++++++||++++.|.+|.+++..+.+++.+++.+|+++||++|+
T Consensus        81 ~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea  160 (308)
T PLN02978         81 ANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEA  160 (308)
T ss_pred             HcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHH
Confidence            88776789999999999999999999999998754578899999999888877778888888756999999999999999


Q ss_pred             HHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEEEee
Q 027620          161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSH  206 (221)
Q Consensus       161 ~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~~~~  206 (221)
                      +.|+|.++.+.+++.++++++.++|++.|+||.++.+|..+...|.
T Consensus       161 ~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~  206 (308)
T PLN02978        161 EQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSH  206 (308)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEec
Confidence            9999988878888999999999999999999999877766555554

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PRK05756 pyridoxamine kinase; Validated Back     alignment and domain information
>PTZ00344 pyridoxal kinase; Provisional Back     alignment and domain information
>TIGR00687 pyridox_kin pyridoxal kinase Back     alignment and domain information
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription] Back     alignment and domain information
>PRK07105 pyridoxamine kinase; Validated Back     alignment and domain information
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase Back     alignment and domain information
>PRK12412 pyridoxal kinase; Reviewed Back     alignment and domain information
>PRK12616 pyridoxal kinase; Reviewed Back     alignment and domain information
>PTZ00493 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2 Back     alignment and domain information
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>PTZ00347 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK08573 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional Back     alignment and domain information
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase Back     alignment and domain information
>PRK12413 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00292 ribokinase; Provisional Back     alignment and domain information
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>PRK11142 ribokinase; Provisional Back     alignment and domain information
>PRK10294 6-phosphofructokinase 2; Provisional Back     alignment and domain information
>TIGR03828 pfkB 1-phosphofructokinase Back     alignment and domain information
>PRK09513 fruK 1-phosphofructokinase; Provisional Back     alignment and domain information
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>PLN02967 kinase Back     alignment and domain information
>PTZ00247 adenosine kinase; Provisional Back     alignment and domain information
>PLN02341 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>PLN02543 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information
>PRK09850 pseudouridine kinase; Provisional Back     alignment and domain information
>TIGR02152 D_ribokin_bact ribokinase Back     alignment and domain information
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>PRK09954 putative kinase; Provisional Back     alignment and domain information
>PRK13508 tagatose-6-phosphate kinase; Provisional Back     alignment and domain information
>TIGR01231 lacC tagatose-6-phosphate kinase Back     alignment and domain information
>cd01941 YeiC_kinase_like YeiC-like sugar kinase Back     alignment and domain information
>PLN02323 probable fructokinase Back     alignment and domain information
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15074 inosine/guanosine kinase; Provisional Back     alignment and domain information
>PLN02813 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases Back     alignment and domain information
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>PLN02548 adenosine kinase Back     alignment and domain information
>PRK09434 aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related Back     alignment and domain information
>cd01944 YegV_kinase_like YegV-like sugar kinase Back     alignment and domain information
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>cd01171 YXKO-related B Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd01946 ribokinase_group_C Ribokinase-like subgroup C Back     alignment and domain information
>cd01943 MAK32 MAK32 kinase Back     alignment and domain information
>PLN02379 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like Back     alignment and domain information
>cd01945 ribokinase_group_B Ribokinase-like subgroup B Back     alignment and domain information
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz Back     alignment and domain information
>TIGR00694 thiM hydroxyethylthiazole kinase Back     alignment and domain information
>cd01942 ribokinase_group_A Ribokinase-like subgroup A Back     alignment and domain information
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose Back     alignment and domain information
>PRK09355 hydroxyethylthiazole kinase; Validated Back     alignment and domain information
>PRK09813 fructoselysine 6-kinase; Provisional Back     alignment and domain information
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases Back     alignment and domain information
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01937 ribokinase_group_D Ribokinase-like subgroup D Back     alignment and domain information
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism] Back     alignment and domain information
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium [] Back     alignment and domain information
>PLN02630 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14039 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>PRK03979 ADP-specific phosphofructokinase; Provisional Back     alignment and domain information
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase Back     alignment and domain information
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14038 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional Back     alignment and domain information
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
1lhp_A312 Crystal Structure Of Pyridoxal Kinase From Sheep Br 7e-59
3fhx_A312 Crystal Structure Of D235a Mutant Of Human Pyridoxa 3e-57
2yxt_A312 Human Pyridoxal Kinase Length = 312 4e-57
3fhy_A312 Crystal Structure Of D235n Mutant Of Human Pyridoxa 4e-57
2f7k_A327 Crystal Structure Of Human Pyridoxal Kinase Length 4e-57
2ajp_A326 Crystal Structure Of A Human Pyridoxal Kinase Lengt 9e-57
3zs7_A300 Crystal Structure Of Pyridoxal Kinase From Trypanos 7e-39
3pzs_A289 Crystal Structure Of A Pyridoxamine Kinase From Yer 1e-25
1td2_A287 Crystal Structure Of The Pdxy Protein From Escheric 4e-24
1vi9_A299 Crystal Structure Of Pyridoxamine Kinase Length = 2 9e-23
2ddm_A283 Crystal Structure Of Pyridoxal Kinase From The Esch 2e-17
3mbj_A291 Crystal Structure Of A Putative Phosphomethylpyrimi 4e-09
2i5b_A271 The Crystal Structure Of An Adp Complex Of Bacillus 2e-06
3h74_A282 Crystal Structure Of Pyridoxal Kinase From Lactobac 9e-05
1rk2_A309 E. Coli Ribokinase Complexed With Ribose And Adp, S 1e-04
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/188 (56%), Positives = 142/188 (75%), Gaps = 4/188 (2%)
Query: 13  ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
           E  RVLSIQSH V+GYVGN++A FPLQ+LG++VD ++SVQFSNHTGY  +KGQVLN  +L
Sbjct: 3   EECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDEL 62
Query: 73  CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
            +L +GL+ N++  Y ++LTGY    SFL  ++ +V++L+  NP L+YVCDPVMGD    
Sbjct: 63  QELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
           EG +YVP +L+ VYREKVVPVA ++TPNQFEAE LTG +I S+ +  E   +LH+ GP  
Sbjct: 123 EGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDT 182
Query: 189 VVITSINI 196
           VVITS N+
Sbjct: 183 VVITSSNL 190
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal Kinase Length = 312 Back     alignment and structure
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase Length = 312 Back     alignment and structure
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal Kinase Length = 312 Back     alignment and structure
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase Length = 327 Back     alignment and structure
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase Length = 326 Back     alignment and structure
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma Brucei Length = 300 Back     alignment and structure
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia Pestis Co92 Length = 289 Back     alignment and structure
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia Coli Length = 287 Back     alignment and structure
>pdb|1VI9|A Chain A, Crystal Structure Of Pyridoxamine Kinase Length = 299 Back     alignment and structure
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia Coli Pdxk Gene At 2.1 A Resolution Length = 283 Back     alignment and structure
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine Kinase (Bt_4458) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.10 A Resolution (Rhombohedral Form) Length = 291 Back     alignment and structure
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus Subtilis Pyridoxal Kinase Provides Evidence For The Parralel Emergence Of Enzyme Activity During Evolution Length = 271 Back     alignment and structure
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus Plantarum Length = 282 Back     alignment and structure
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved In Space Group P212121 Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 1e-86
2yxt_A312 Pyridoxal kinase; beta sheet with alpha helix, met 2e-85
3pzs_A289 PM kinase, pyridoxamine kinase; structural genomic 8e-84
3zs7_A300 Pyridoxal kinase; transferase, sleeping sickness; 4e-81
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 1e-77
3h74_A282 Pyridoxal kinase; PSI-II, structural genomics, pro 5e-20
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 3e-16
2i5b_A271 Phosphomethylpyrimidine kinase; ADP complex, PDXK, 6e-16
1jxh_A288 Phosphomethylpyrimidine kinase; THID, ribokinase f 2e-14
3rm5_A 550 Hydroxymethylpyrimidine/phosphomethylpyrimidine K 3e-14
3kzh_A328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 6e-10
2fv7_A331 Ribokinase; structural genomics, structural genomi 3e-09
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 3e-09
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 3e-09
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 4e-09
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 9e-07
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 4e-06
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 2e-05
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 4e-05
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 5e-05
3kd6_A313 Carbohydrate kinase, PFKB family; nucleoside kinas 5e-04
3b1n_A326 Ribokinase, putative; rossmann fold, ATP binding, 7e-04
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Length = 283 Back     alignment and structure
 Score =  256 bits (657), Expect = 1e-86
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 7   SLALPSETG-----RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPT 61
           SL L ++        ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y T
Sbjct: 3   SLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDT 62

Query: 62  FKGQVLNGQQLCDLIEGLEANNLLY-YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIY 120
           F G  +  +     +  L+  + L     + TGY+G+ S +  + + +  LR  +P+L+ 
Sbjct: 63  FYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLI 122

Query: 121 VCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACK 179
           + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K
Sbjct: 123 MVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAK 182

Query: 180 ILHAAGPAKVVITSINIDGN 199
            L +     VV+TS + +  
Sbjct: 183 SLLSDTLKWVVVTSASGNEE 202
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Length = 312 Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} PDB: 1td2_A* 1vi9_A* Length = 289 Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Length = 300 Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Length = 291 Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Length = 282 Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Length = 258 Back     alignment and structure
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis} Length = 271 Back     alignment and structure
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Length = 288 Back     alignment and structure
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Length = 550 Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328 Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331 Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309 Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311 Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304 Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317 Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298 Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343 Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325 Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309 Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313 Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
3zs7_A300 Pyridoxal kinase; transferase, sleeping sickness; 99.97
3pzs_A289 PM kinase, pyridoxamine kinase; structural genomic 99.96
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 99.95
3h74_A282 Pyridoxal kinase; PSI-II, structural genomics, pro 99.94
2yxt_A312 Pyridoxal kinase; beta sheet with alpha helix, met 99.9
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 99.89
3rm5_A 550 Hydroxymethylpyrimidine/phosphomethylpyrimidine K 99.89
2i5b_A271 Phosphomethylpyrimidine kinase; ADP complex, PDXK, 99.83
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 99.82
1jxh_A288 Phosphomethylpyrimidine kinase; THID, ribokinase f 99.8
3umo_A309 6-phosphofructokinase isozyme 2; glycolysis, trans 99.66
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 99.59
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 99.58
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 99.57
3ktn_A346 Carbohydrate kinase, PFKB family; PFKB family,ribo 99.55
2fv7_A331 Ribokinase; structural genomics, structural genomi 99.55
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 99.54
3iq0_A330 Putative ribokinase II; transferase,kinase,SAD,rib 99.52
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 99.52
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 99.51
3kzh_A328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 99.51
3vas_A370 Putative adenosine kinase; ribokinase, enzyme, tra 99.49
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 99.48
3ljs_A338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 99.48
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 99.48
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 99.47
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 99.47
2afb_A351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 99.47
2f02_A323 Tagatose-6-phosphate kinase; LACC, structural geno 99.46
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 99.46
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 99.46
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 99.45
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 99.45
4e84_A352 D-beta-D-heptose 7-phosphate kinase; LPS-heptose b 99.45
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 99.41
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 99.39
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 99.39
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 99.37
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 99.37
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 99.37
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 99.37
4e3a_A352 Sugar kinase protein; structural genomics, protein 99.36
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 99.35
2abs_A383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 99.33
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 99.29
3uq6_A372 Adenosine kinase, putative; ribokinase, transferas 99.27
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 99.25
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 99.24
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 99.23
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 99.21
3kd6_A313 Carbohydrate kinase, PFKB family; nucleoside kinas 99.17
4gm6_A351 PFKB family carbohydrate kinase; enzyme function i 99.13
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 99.05
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 99.03
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 99.02
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 98.97
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 98.94
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 98.9
3b1n_A326 Ribokinase, putative; rossmann fold, ATP binding, 98.84
1ekq_A272 Hydroxyethylthiazole kinase; alpha-beta, transfera 98.8
2r3b_A310 YJEF-related protein; putative kinase in the ribok 98.79
3bgk_A311 SMU.573, putative uncharacterized protein; alpha/b 98.75
1v8a_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 98.52
3dzv_A273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 98.36
3nl6_A540 Thiamine biosynthetic bifunctional enzyme; thiamin 98.13
3bf5_A306 Ribokinase related protein; 10640157, putative rib 98.02
3hpd_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 97.72
3rss_A502 Putative uncharacterized protein; unknown function 97.62
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 97.45
3k5w_A475 Carbohydrate kinase; 11206B,helicobacter pylori,PS 91.04
1ua4_A455 Glucokinase, ADP-dependent glucokinase; transferas 82.22
3drw_A474 ADP-specific phosphofructokinase; AMP, GLYC kinase 82.22
1gc5_A467 ADP-dependent glucokinase; ALFA/beta sandwichs, in 81.43
1l2l_A457 ADP-dependent glucokinase; ADP glucokinase APO, tr 80.64
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Back     alignment and structure
Probab=99.97  E-value=1.7e-29  Score=216.53  Aligned_cols=183  Identities=44%  Similarity=0.785  Sum_probs=158.3

Q ss_pred             CCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcc-cccEEEE
Q 027620           14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT   92 (221)
Q Consensus        14 ~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l-~~~~v~~   92 (221)
                      .|+||+|+++|+.|++|+.+++..|+.+|+++..++|+..+|+++|..+.|..++.++++.++++++....+ .+|+|++
T Consensus         3 ~~~VLsI~~~~~~G~~G~~aa~~~l~~~G~~v~~~~T~~~Snhtg~~~~~g~~~~~~ql~~~~~~~~~~~~~~~~daV~t   82 (300)
T 3zs7_A            3 EKTVLSIQSFVTHGYVGNKAATFPLQLHGFDVDGINTVCLSNHSGYPVIRGHRMSLQEYDELMEGVRANNFLSNYRYILT   82 (300)
T ss_dssp             CCEEEEEEEEESSSSCHHHHHHHHHHHTTCEEEEEEEEEESSCTTSSCCCEEECCHHHHHHHHHHHHHTTCGGGCSEEEE
T ss_pred             CCeEEEEeCccCCCcchHHHHHHHHHHcCCeeEEeeeEEecCCCCCCCcCCCcCCHHHHHHHHHHHHhcCCcccCCEEEE
Confidence            589999999999999999999999999999999999998889999887788999999999999999876532 4889999


Q ss_pred             eecCChhHHHHHHHHHHHHHhcCCC----CeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCC
Q 027620           93 GYIGSVSFLNTILQVVEKLRSINPN----LIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI  168 (221)
Q Consensus        93 G~l~~~~~~~~i~~~i~~ak~~~~~----~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~  168 (221)
                      ||+++....+.+.++++.+|+++|+    .++++||++++.|.+|.+++..+.+++ +++.+|+++||..|++.|+|.++
T Consensus        83 G~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~~~~~~~~-Ll~~adiitPN~~Ea~~L~g~~~  161 (300)
T 3zs7_A           83 GYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYCKKEVLDAYRE-LVPLADIVTPNYFEASLLSGVTV  161 (300)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---------CTHHHHHHH-HGGGCSEECCCHHHHHHHHSSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeecCHHHHHHHHH-HhhhCCEecCCHHHHHHHhCCCC
Confidence            9999999999999999999876333    789999999977888888999999998 99999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620          169 GSEADGREACKILHAAGPAKVVITSINID  197 (221)
Q Consensus       169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~~~  197 (221)
                      .+.+++.+++++|+++|++.|+||+|+..
T Consensus       162 ~~~~~~~~aa~~L~~~G~~~Vvvt~g~~g  190 (300)
T 3zs7_A          162 NDLSSAILAADWFHNCGVAHVIIKSFREQ  190 (300)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEEEEC--
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEecCcCC
Confidence            99999999999999999999999999954
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A* Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Back     alignment and structure
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Back     alignment and structure
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis} Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Back     alignment and structure
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Back     alignment and structure
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A* Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Back     alignment and structure
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A* Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A* Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Back     alignment and structure
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A* Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0 Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Back     alignment and structure
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A* Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Back     alignment and structure
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601} Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Back     alignment and structure
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A Back     alignment and structure
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori} Back     alignment and structure
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3 Back     alignment and structure
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A Back     alignment and structure
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3 Back     alignment and structure
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 221
d1lhpa_309 c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) 1e-59
d1vi9a_288 c.72.1.5 (A:) Pyridoxamine kinase {Escherichia col 1e-49
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Length = 309 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxal kinase
species: Sheep (Ovis aries) [TaxId: 9940]

 Score =  187 bits (476), Expect = 1e-59
 Identities = 106/188 (56%), Positives = 141/188 (75%), Gaps = 4/188 (2%)

Query: 16  RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDL 75
           RVLSIQSH V+GYVGN++A FPLQ+LG++VD ++SVQFSNHTGY  +KGQVLN  +L +L
Sbjct: 3   RVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQEL 62

Query: 76  IEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD----EGK 131
            +GL+ N++  Y ++LTGY    SFL  ++ +V++L+  NP L+YVCDPVMGD    EG 
Sbjct: 63  YDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGA 122

Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
           +YVP +L+ VYREKVVPVA ++TPNQFEAE LTG +I S+ +  E   +LH+ GP  VVI
Sbjct: 123 MYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVI 182

Query: 192 TSINIDGN 199
           TS N+   
Sbjct: 183 TSSNLLSP 190
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Length = 288 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
d1lhpa_309 Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940] 99.97
d1vi9a_288 Pyridoxamine kinase {Escherichia coli [TaxId: 562] 99.96
d1ub0a_258 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.93
d1jxha_266 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.91
d2ajra1319 Putative sugar kinase TM0828 {Thermotoga maritima 99.28
d2abqa1306 Fructose 1-phosphate kinase FruB {Bacillus halodur 99.19
d2f02a1313 Tagatose-6-phosphate kinase LacC {Enterococcus fae 99.18
d2afba1333 2-keto-3-deoxygluconate kinase {Thermotoga maritim 98.81
d1bx4a_342 Adenosine kinase {Human (Homo sapiens) [TaxId: 960 98.75
d2fv7a1308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 98.2
d1rkda_306 Ribokinase {Escherichia coli [TaxId: 562]} 98.17
d1ekqa_269 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba 98.15
d1v19a_302 2-keto-3-deoxygluconate kinase {Thermus thermophil 98.15
d2absa1350 Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} 98.07
d1v8aa_264 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar 97.94
d1vm7a_299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 97.69
d1tyya_304 Aminoimidazole riboside kinase {Salmonella typhimu 97.57
d1vk4a_288 Hypothetical protein TM0415 {Thermotoga maritima [ 97.52
d2dcna1308 Hypothetical fructokinase ST2478 {Sulfolobus tokod 97.14
d2ax3a1278 Hypothetical protein TM0922, C-terminal domain {Th 96.82
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 96.25
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: PfkB-like kinase
domain: Pyridoxal kinase
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.97  E-value=2.7e-29  Score=214.08  Aligned_cols=183  Identities=57%  Similarity=0.974  Sum_probs=167.2

Q ss_pred             CeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEee
Q 027620           15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY   94 (221)
Q Consensus        15 ~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~   94 (221)
                      .+||+|+++++.|+||+.+.+..|+.+|+++..++|+..+|+++|..+.|..++.+++..+++.+.......+|++++||
T Consensus         2 ~rvLsIqs~v~~G~vG~~aa~~~L~~~G~~v~~lpTv~lSnhtgy~~~~~~~~~~~~l~~~~~~~~~~~l~~~daI~tG~   81 (309)
T d1lhpa_           2 CRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYVLTGY   81 (309)
T ss_dssp             CEEEEEEEEESSSCSTHHHHHHHHHHTTCEEEEEEEEEESSCTTSSCCCEEECCHHHHHHHHHHHHHTTCCCCSEEEECC
T ss_pred             CEEEEEecccCCCchhHHHHHHHHHHcCCeeEEeceEEecCCCCCCCcceeeCCHHHHHHHHHHHHhccccccCeeeecc
Confidence            48999999999999999999999999999999999998889999988788889989999999888766544589999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCC----CCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620           95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDE----GKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS  170 (221)
Q Consensus        95 l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~----g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s  170 (221)
                      +++....+.+.++++..+..+|+.++++||++.+.    |..+.+++..+.+++.|++.+|+++||..|++.|+|.++.+
T Consensus        82 l~s~~~i~~i~~~l~~~~~~~p~~~~v~DPVmgd~~~g~g~~~~~~~~~~~~~~~Llp~adiITPN~~Ea~~Ltg~~~~~  161 (309)
T d1lhpa_          82 TRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHS  161 (309)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCSSCCCSSSCSCCCGGGHHHHHHTTGGGCSEECCCHHHHHHHHTCCCCS
T ss_pred             cCCHHHHHHHHHHHHHhhccCCCCcEEEeccccccccccccccCCHHHHHHHHHhhcCcCcEEeccHHHHhHHhccccCC
Confidence            99999999999999999888788999999999753    55678899999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620          171 EADGREACKILHAAGPAKVVITSINID  197 (221)
Q Consensus       171 ~~~~~~a~~~L~~~G~~~VvVT~G~~~  197 (221)
                      .+++.++++.|+++|+++|+||.|+..
T Consensus       162 ~~~~~~aa~~L~~~g~~~VvvTg~~~~  188 (309)
T d1lhpa_         162 QEEALEVMDMLHSMGPDTVVITSSNLL  188 (309)
T ss_dssp             HHHHHHHHHHHHHHSCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccC
Confidence            999999999999999999999999865
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure