Citrus Sinensis ID: 027623

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA
cHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MESRVRKAEKLVERsmkgndashdashVWRVRDLALSLAReeglasnpdsMEIVELAALLHDigdykylrdpseEKIVENFledegleeSKKMRILNIIKKMGFKDEIAGlanaefspefgvvqdadrLDAIGAIGIARCftfggsrnrvlhdpaikprsdvskeqymkkEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA
MESRVRKAEKLversmkgndashdashvwRVRDLALSLAREEglasnpdsMEIVELAALLHDIGDYKYLRDPSEEKIVEnfledegleeskKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTfggsrnrvlhdpaikprsdvskeqymkkeeqttvnhfhekllklkdlMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA
MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKfmeeflmefyeeWDGKA
**************************HVWRVRDLALSLA***********MEIVELAALLHDIGDYKYLRDPSEEKIVENFLED******KKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVL******************************************************MEEFLMEFYE******
MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY*******KIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK*
************************ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA
MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDG**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query221 2.2.26 [Sep-21-2011]
P54168205 Uncharacterized protein Y yes no 0.864 0.931 0.354 1e-23
P46144231 Uncharacterized protein Y N/A no 0.873 0.835 0.276 9e-12
Q5UR59243 Uncharacterized protein L N/A no 0.809 0.736 0.263 6e-06
>sp|P54168|YPGQ_BACSU Uncharacterized protein YpgQ OS=Bacillus subtilis (strain 168) GN=ypgQ PE=4 SV=1 Back     alignment and function desciption
 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 29/220 (13%)

Query: 5   VRKAEKL---VERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
           +++AE++   V+  +    + HD  HV RV DLA  +  +E        + IVE AAL+H
Sbjct: 4   LKQAEQIRTWVQSILTDESSGHDWHHVSRVADLAAYIGEKE-----KADLFIVETAALVH 58

Query: 62  DIGDYKYLRDPSEEKIVENF--LEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPE 119
           D+ D K L D     + E +  L   G+ +    R+++II +M F+D    LA    S E
Sbjct: 59  DLIDVK-LPDTVRLSVSEVYDQLVFFGVGKENADRVIHIITRMSFRDR-GKLAKEPLSIE 116

Query: 120 FGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHF 179
              VQDADRLDAIGA+GIAR F F G++   L+                  +EQ+   HF
Sbjct: 117 GKAVQDADRLDAIGAVGIARAFMFAGAKGHGLY-----------------GDEQSAYAHF 159

Query: 180 HEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDG 219
             KLL+LKD+M T+  +  AE+RH FM +F+ +  ++  G
Sbjct: 160 FHKLLRLKDMMNTDTARELAEERHNFMLQFVRQLEKDIPG 199

Bacillus subtilis (strain 168) (taxid: 224308)
>sp|P46144|YEDJ_ECOLI Uncharacterized protein YedJ OS=Escherichia coli (strain K12) GN=yedJ PE=1 SV=2 Back     alignment and function description
>sp|Q5UR59|YL803_MIMIV Uncharacterized protein L803 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L803 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
225423741273 PREDICTED: uncharacterized protein ypgQ 1.0 0.809 0.856 1e-100
449464036223 PREDICTED: uncharacterized protein YpgQ- 0.981 0.973 0.824 1e-100
351720901223 uncharacterized protein LOC100500273 [Gl 0.968 0.959 0.799 4e-99
15220978222 Metal-dependent phosphohydrolase [Arabid 0.972 0.968 0.832 5e-99
297844676222 hypothetical protein ARALYDRAFT_471936 [ 0.972 0.968 0.818 2e-96
297737947206 unnamed protein product [Vitis vinifera] 0.932 1.0 0.873 2e-95
255565568223 catalytic, putative [Ricinus communis] g 0.981 0.973 0.843 7e-93
357469559285 hypothetical protein MTR_4g023480 [Medic 0.981 0.761 0.690 2e-86
326494122222 predicted protein [Hordeum vulgare subsp 0.995 0.990 0.663 2e-79
357146724221 PREDICTED: uncharacterized protein ypgQ- 0.945 0.945 0.688 9e-79
>gi|225423741|ref|XP_002277028.1| PREDICTED: uncharacterized protein ypgQ [Vitis vinifera] gi|147836213|emb|CAN75429.1| hypothetical protein VITISV_003303 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 210/223 (94%), Gaps = 2/223 (0%)

Query: 1   MESR--VRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAA 58
           ME R  VRKAE+LVE +MKGNDASHDA+HV+RVRD+ALSLA EEGL+S+ DSMEIVELAA
Sbjct: 51  MERREVVRKAEQLVEAAMKGNDASHDAAHVFRVRDMALSLALEEGLSSSSDSMEIVELAA 110

Query: 59  LLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSP 118
           LLHDIGDYKY+RDPSEEKIVENFLE+EG+EESK+M+IL+IIK MGFK+E+AG AN E+ P
Sbjct: 111 LLHDIGDYKYVRDPSEEKIVENFLEEEGIEESKRMKILSIIKAMGFKEELAGFANGEYPP 170

Query: 119 EFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNH 178
           EFGVVQDADRLDAIGAIGIARCFTFGGSR RVLHDPAIKPRSD+SKEQYMKKEEQTTVNH
Sbjct: 171 EFGVVQDADRLDAIGAIGIARCFTFGGSRKRVLHDPAIKPRSDLSKEQYMKKEEQTTVNH 230

Query: 179 FHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGKA 221
           FHEKLLKLKDLMKT+AGQRRAEKRH FMEEFL EFYEEWDG+A
Sbjct: 231 FHEKLLKLKDLMKTKAGQRRAEKRHNFMEEFLKEFYEEWDGRA 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449464036|ref|XP_004149735.1| PREDICTED: uncharacterized protein YpgQ-like [Cucumis sativus] gi|449512748|ref|XP_004164130.1| PREDICTED: uncharacterized protein YpgQ-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351720901|ref|NP_001235656.1| uncharacterized protein LOC100500273 [Glycine max] gi|255629891|gb|ACU15296.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15220978|ref|NP_173176.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|27311541|gb|AAO00736.1| unknown protein [Arabidopsis thaliana] gi|32362289|gb|AAP80172.1| At1g17330 [Arabidopsis thaliana] gi|332191452|gb|AEE29573.1| Metal-dependent phosphohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844676|ref|XP_002890219.1| hypothetical protein ARALYDRAFT_471936 [Arabidopsis lyrata subsp. lyrata] gi|297336061|gb|EFH66478.1| hypothetical protein ARALYDRAFT_471936 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297737947|emb|CBI27148.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565568|ref|XP_002523774.1| catalytic, putative [Ricinus communis] gi|223536986|gb|EEF38623.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357469559|ref|XP_003605064.1| hypothetical protein MTR_4g023480 [Medicago truncatula] gi|355506119|gb|AES87261.1| hypothetical protein MTR_4g023480 [Medicago truncatula] Back     alignment and taxonomy information
>gi|326494122|dbj|BAJ85523.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357146724|ref|XP_003574089.1| PREDICTED: uncharacterized protein ypgQ-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
TAIR|locus:2029111222 AT1G17330 [Arabidopsis thalian 0.972 0.968 0.786 7.5e-89
UNIPROTKB|Q81R90215 BAS2009 "HD domain protein" [B 0.941 0.967 0.391 4.4e-36
TIGR_CMR|BA_2163215 BA_2163 "HD domain protein" [B 0.941 0.967 0.391 4.4e-36
DICTYBASE|DDB_G0277025237 DDB_G0277025 "Uncharacterized 0.900 0.839 0.390 5.2e-33
ASPGD|ASPL0000053705228 AN9449 [Emericella nidulans (t 0.809 0.785 0.388 4.6e-25
UNIPROTKB|G4MNM2217 MGG_05648 "Uncharacterized pro 0.683 0.695 0.381 4.3e-23
UNIPROTKB|Q71YP1202 LMOf2365_1802 "HD domain prote 0.819 0.896 0.336 9e-22
UNIPROTKB|Q48N53219 PSPPH_0892 "HD domain protein" 0.764 0.771 0.305 2.1e-13
UNIPROTKB|Q5LX61234 SPO0266 "HD domain protein" [R 0.791 0.747 0.318 2.4e-12
TIGR_CMR|SPO_0266234 SPO_0266 "HD domain protein" [ 0.791 0.747 0.318 2.4e-12
TAIR|locus:2029111 AT1G17330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 169/215 (78%), Positives = 191/215 (88%)

Query:     5 VRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIG 64
             +RKAE+LVE++MKGNDASHDA HVWRVRDLALS+AREEGL+SN DSMEIVELAALLHDIG
Sbjct:     6 MRKAEELVEKAMKGNDASHDAWHVWRVRDLALSIAREEGLSSNSDSMEIVELAALLHDIG 65

Query:    65 DYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQ 124
             DYKY+RDPSEEK+VENFL+DEG+EE+KK +IL II  MGFKDE+AG+A  E  PEFGVVQ
Sbjct:    66 DYKYIRDPSEEKLVENFLDDEGIEETKKTKILTIINGMGFKDELAGVALCESLPEFGVVQ 125

Query:   125 DADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLL 184
             DADRLDAIGAIGIARCFTFGGSRNRVLHDP IKPR++++KEQY+K+EEQTT+NHFHEKLL
Sbjct:   126 DADRLDAIGAIGIARCFTFGGSRNRVLHDPEIKPRTELTKEQYIKREEQTTINHFHEKLL 185

Query:   185 KLKDLMKTEAGQRRAEKRHKXXXXXXXXXXXXWDG 219
             KLK LMKTEAG+RRAEKRHK            WDG
Sbjct:   186 KLKKLMKTEAGKRRAEKRHKFMEEYLKEFYEEWDG 220
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|Q81R90 BAS2009 "HD domain protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2163 BA_2163 "HD domain protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277025 DDB_G0277025 "Uncharacterized protein yedJ" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053705 AN9449 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MNM2 MGG_05648 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q71YP1 LMOf2365_1802 "HD domain protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q48N53 PSPPH_0892 "HD domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LX61 SPO0266 "HD domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0266 SPO_0266 "HD domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54168YPGQ_BACSUNo assigned EC number0.35450.86420.9317yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030197001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (223 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00006976001
SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (469 aa)
•       0.496

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
COG1418222 COG1418, COG1418, Predicted HD superfamily hydrola 4e-30
PRK10119231 PRK10119, PRK10119, putative hydrolase; Provisiona 1e-15
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 6e-09
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 2e-08
pfam01966111 pfam01966, HD, HD domain 4e-07
>gnl|CDD|224336 COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information 
 Score =  110 bits (277), Expect = 4e-30
 Identities = 68/221 (30%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 7   KAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66
              KL+ R        H   H  RV  LA  +A EEG+       ++   AALLHDIG  
Sbjct: 20  DLVKLLGRLKFRTYGQHVLEHSLRVAYLAYRIAEEEGV-----DPDLALRAALLHDIGKA 74

Query: 67  K---YLRDPSEE--KIVENFLEDEGLEESKKM--RILNIIKKMGFKDEIAGLANAEFSPE 119
                    +E   +I   FLED  +  + +    +  II +  F    A   +A  +  
Sbjct: 75  IDHEPGGSHAEIGAEIARKFLEDPVVINAIEAHHGVEEIISRHSFLVAAADALSA--ARP 132

Query: 120 FGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHF 179
              +QDADRLDA GAIG AR F F G      +          +  +  +  E   ++HF
Sbjct: 133 GARLQDADRLDARGAIGEARVFLFEG--VEKAYAIQ-------AGRELRRIVEDKKLDHF 183

Query: 180 HEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220
            EKLLKLK   KTE    +AE   K     + E   E   K
Sbjct: 184 QEKLLKLKISKKTEEA--KAEYPGKIKVTVIRELRAEEYAK 222

Length = 222
>gnl|CDD|182251 PRK10119, PRK10119, putative hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 221
PRK10119231 putative hydrolase; Provisional 100.0
COG1418222 Predicted HD superfamily hydrolase [General functi 99.95
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 99.85
PRK12703339 tRNA 2'-O-methylase; Reviewed 99.48
TIGR00295164 conserved hypothetical protein TIGR00295. This set 99.44
COG4339208 Uncharacterized protein conserved in bacteria [Fun 99.42
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 99.37
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 99.27
PRK05007 884 PII uridylyl-transferase; Provisional 99.21
smart00471124 HDc Metal dependent phosphohydrolases with conserv 99.08
PRK12704520 phosphodiesterase; Provisional 99.08
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 99.05
COG1713187 Predicted HD superfamily hydrolase involved in NAD 99.04
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 99.02
PRK12705508 hypothetical protein; Provisional 98.96
PRK00106535 hypothetical protein; Provisional 98.96
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 98.94
PRK03059 856 PII uridylyl-transferase; Provisional 98.92
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 98.88
PRK05092 931 PII uridylyl-transferase; Provisional 98.84
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 98.82
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 98.79
PRK01759 854 glnD PII uridylyl-transferase; Provisional 98.75
PRK00275 895 glnD PII uridylyl-transferase; Provisional 98.72
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 98.71
PRK04374 869 PII uridylyl-transferase; Provisional 98.7
COG3437360 Response regulator containing a CheY-like receiver 98.66
PRK00227 693 glnD PII uridylyl-transferase; Provisional 98.65
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.64
PRK03381 774 PII uridylyl-transferase; Provisional 98.61
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 98.39
COG1078 421 HD superfamily phosphohydrolases [General function 98.32
COG1480700 Predicted membrane-associated HD superfamily hydro 98.15
COG2316212 Predicted hydrolase (HD superfamily) [General func 98.12
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 98.07
COG3481287 Predicted HD-superfamily hydrolase [General functi 98.07
TIGR01596177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 98.05
COG3294269 HD supefamily hydrolase [General function predicti 97.96
TIGR03276179 Phn-HD phosphonate degradation operons associated 97.96
PRK01286336 deoxyguanosinetriphosphate triphosphohydrolase-lik 97.89
PRK10854513 exopolyphosphatase; Provisional 97.88
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 97.73
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 97.58
COG0232 412 Dgt dGTP triphosphohydrolase [Nucleotide transport 97.54
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 97.47
PRK03007 428 deoxyguanosinetriphosphate triphosphohydrolase-lik 97.44
TIGR01353 381 dGTP_triPase deoxyguanosinetriphosphate triphospho 97.43
PRK03826195 5'-nucleotidase; Provisional 97.4
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 97.38
COG1896193 Predicted hydrolases of HD superfamily [General fu 97.23
KOG3197210 consensus Predicted hydrolases of HD superfamily [ 97.18
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 97.08
PRK05318 432 deoxyguanosinetriphosphate triphosphohydrolase-lik 97.07
PRK01096 440 deoxyguanosinetriphosphate triphosphohydrolase-lik 96.88
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 96.85
KOG2681 498 consensus Metal-dependent phosphohydrolase [Functi 96.81
PF02092548 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; 96.46
PF13875185 DUF4202: Domain of unknown function (DUF4202) 96.43
PRK01233 682 glyS glycyl-tRNA synthetase subunit beta; Validate 96.42
PRK04926 503 dgt deoxyguanosinetriphosphate triphosphohydrolase 96.41
COG0751 691 GlyS Glycyl-tRNA synthetase, beta subunit [Transla 95.58
TIGR00211 691 glyS glycyl-tRNA synthetase, tetrameric type, beta 95.28
COG4341186 Predicted HD phosphohydrolase [General function pr 95.21
PRK14908 1000 glycyl-tRNA synthetase; Provisional 95.19
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 95.07
COG1639289 Predicted signal transduction protein [Signal tran 95.02
PF00233237 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase 94.27
KOG3689707 consensus Cyclic nucleotide phosphodiesterase [Sig 94.15
PF07514327 TraI_2: Putative helicase; InterPro: IPR011119 The 94.12
COG0248492 GppA Exopolyphosphatase [Nucleotide transport and 93.43
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 92.78
KOG1573204 consensus Aldehyde reductase [General function pre 90.82
TIGR02578 648 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 fa 87.25
PF05153253 DUF706: Family of unknown function (DUF706) ; Inte 86.71
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 86.22
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 80.41
KOG1157 543 consensus Predicted guanosine polyphosphate pyroph 80.07
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-59  Score=381.84  Aligned_cols=204  Identities=30%  Similarity=0.428  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC-CCCCC---chH-H-
Q 027623            2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY-KYLRD---PSE-E-   75 (221)
Q Consensus         2 ~~~i~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~-~~~~~---~~~-~-   75 (221)
                      +.+++++++||++.|.+++++|||.|+.||+.+|..|+..++     .|.+++.+|||||||++. ++..+   +.. . 
T Consensus         4 ~~~~~~~~~~v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~-----~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a   78 (231)
T PRK10119          4 QHWQAQFENWLKNHHQHQDAAHDICHFRRVWATAQKLAADDD-----VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAA   78 (231)
T ss_pred             HHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhcchhhhcCccccchhhHHH
Confidence            678999999999999999999999999999999999998887     799999999999999984 44332   222 3 


Q ss_pred             HHHHHHHhh--CCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCC
Q 027623           76 KIVENFLED--EGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHD  153 (221)
Q Consensus        76 ~~a~~~L~~--~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~  153 (221)
                      ..+..+|.+  .|+|++.++.|+.+|.+|||+.+.     .|.++|++||||||+||+||+|||+|||.|+|.+|+++|+
T Consensus        79 ~~a~~~L~~~~~g~~~~~i~~V~~iI~~~sfs~~~-----~p~tlE~kIVQDADRLDAiGAIGIaR~f~~gG~~gr~~~d  153 (231)
T PRK10119         79 EETRRILREDFPDFPAEKIEAVCHAIEAHSFSAQI-----APLTLEAKIVQDADRLEALGAIGLARVFAVSGALGVALFD  153 (231)
T ss_pred             HHHHHHHHHcccCcCHHHHHHHHHHHHHcCCCCCC-----CCCCHHHhhhhhHHHHHhcchHHHHHHHHHHHHhCCCCCC
Confidence            788999999  799999999999999999998764     5789999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHHhhhhccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027623          154 PAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK  220 (221)
Q Consensus       154 ~~~~~~~~~~~~~y~~~~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~~~  220 (221)
                      |++++....+.+++     .++|+|||||||+|++.|+|++||++|++|++||++|+++|..||.|.
T Consensus       154 ~~~~~~~~~~~~~~-----~~~i~HF~eKLl~L~~~m~T~~gr~lA~~R~~~m~~Fl~~~~~E~~g~  215 (231)
T PRK10119        154 AEDPFAQHRPLDDK-----QYALDHFQTKLLKLPQTMQTERGKQLAQHNADFLVEFMAKLSAELKGE  215 (231)
T ss_pred             CCCcchhhccccCc-----hhHHHHHHHHHHhhHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            99988665555443     589999999999999999999999999999999999999999999984

>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only] Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only] Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>COG3294 HD supefamily hydrolase [General function prediction only] Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown] Back     alignment and domain information
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF13875 DUF4202: Domain of unknown function (DUF4202) Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional Back     alignment and domain information
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PRK14908 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP Back     alignment and domain information
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>KOG1573 consensus Aldehyde reductase [General function prediction only] Back     alignment and domain information
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family Back     alignment and domain information
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1 Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
3dto_A223 Crystal Structure Of The Metal-Dependent Hd Domain- 5e-28
3djb_A223 Crystal Structure Of A Hd-Superfamily Hydrolase (Bt 2e-25
2pjq_A231 Crystal Structure Of Q88u62_lacpl From Lactobacillu 1e-23
3b57_A209 Crystal Structure Of The Lin1889 Protein (Q92an1) F 3e-21
2qgs_A225 Crystal Structure Of Se1688 Protein From Staphyloco 1e-20
2pq7_A220 Crystal Structure Of Predicted Hd Superfamily Hydro 7e-14
3gw7_A239 Crystal Structure Of A Metal-Dependent Phosphohydro 2e-10
>pdb|3DTO|A Chain A, Crystal Structure Of The Metal-Dependent Hd Domain- Containing Hydrolase Bh2835 From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr130. Length = 223 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 123/219 (56%), Gaps = 10/219 (4%)
Query: 2   ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
           ++ ++ AE  V++ +    + HD  H+ RV   A ++  +E +      + +V++AAL H
Sbjct: 4   QAILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKV-----DVFVVQIAALFH 58
Query: 62  DIGDYKYLRDP-SEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEF 120
           D+ D K + DP + ++ + ++ E  G+   K     +II  + FK    G   +  + E 
Sbjct: 59  DLIDDKLVDDPETAKQQLIDWXEAAGVPSQKIDHTXDIINTISFK---GGHGQSLATREA 115
Query: 121 GVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFH 180
            VVQDADRLDA+GAIGIAR F + G++ + ++DP +  R   + E+Y +  + T +NHF+
Sbjct: 116 XVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETXTVEEY-RHGKSTAINHFY 174
Query: 181 EKLLKLKDLMKTEAGQRRAEKRHKXXXXXXXXXXXXWDG 219
           EKL KLKDL  TE G++ A++RH             W+G
Sbjct: 175 EKLFKLKDLXNTETGKQLAKERHVFXEQFIERFLSEWNG 213
>pdb|3DJB|A Chain A, Crystal Structure Of A Hd-Superfamily Hydrolase (Bt9727_1981) From Bacillus Thuringiensis, Northeast Structural Genomics Consortium Target Bur114 Length = 223 Back     alignment and structure
>pdb|2PJQ|A Chain A, Crystal Structure Of Q88u62_lacpl From Lactobacillus Plantarum. Northeast Structural Genomics Target Lpr71 Length = 231 Back     alignment and structure
>pdb|3B57|A Chain A, Crystal Structure Of The Lin1889 Protein (Q92an1) From Listeria Innocua. Northeast Structural Consortium Target Lkr65 Length = 209 Back     alignment and structure
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser89 Length = 225 Back     alignment and structure
>pdb|2PQ7|A Chain A, Crystal Structure Of Predicted Hd Superfamily Hydrolase (104161995) From Uncultured Thermotogales Bacterium At 1.45 A Resolution Length = 220 Back     alignment and structure
>pdb|3GW7|A Chain A, Crystal Structure Of A Metal-Dependent Phosphohydrolase With Conserved Hd Domain (Yedj) From Escherichia Coli In Complex With Nickel Ions. Northeast Structural Genomics Consortium Target Er63 Length = 239 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
3dto_A223 BH2835 protein; all alpha-helical protein, structu 2e-63
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 5e-61
2qgs_A225 Protein Se1688; alpha-helical protein, structural 1e-59
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 1e-58
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 6e-53
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 1e-52
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 2e-51
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 3e-04
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 4e-04
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 6e-04
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Length = 223 Back     alignment and structure
 Score =  196 bits (498), Expect = 2e-63
 Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 10/220 (4%)

Query: 2   ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
           ++ ++ AE  V++ +    + HD  H+ RV  +A ++  +E +      + +V++AAL H
Sbjct: 4   QAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKV-----DVFVVQIAALFH 58

Query: 62  DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEF 120
           D+ D K + DP   ++ + +++E  G+   K    ++II  + FK    G   +  + E 
Sbjct: 59  DLIDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFK---GGHGQSLATREA 115

Query: 121 GVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFH 180
            VVQDADRLDA+GAIGIAR F + G++ + ++DP +  R  ++ E+Y +  + T +NHF+
Sbjct: 116 MVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETMTVEEY-RHGKSTAINHFY 174

Query: 181 EKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220
           EKL KLKDLM TE G++ A++RH FME+F+  F  EW+G 
Sbjct: 175 EKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNGD 214
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Length = 223 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Length = 225 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Length = 231 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Length = 239 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Length = 209 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Length = 220 Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Length = 328 Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Length = 190 Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Length = 196 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
3dto_A223 BH2835 protein; all alpha-helical protein, structu 100.0
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 100.0
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 100.0
2qgs_A225 Protein Se1688; alpha-helical protein, structural 100.0
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 100.0
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 100.0
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 100.0
2cqz_A177 177AA long hypothetical protein; hypothetical prot 99.66
2hek_A 371 Hypothetical protein; predominantly alpha helical 99.36
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 99.33
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 99.32
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 99.23
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 98.83
2dqb_A376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 98.75
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 98.75
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 98.56
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 98.35
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 98.34
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 98.34
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 98.25
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 98.14
3u1n_A 528 SAM domain and HD domain-containing protein 1; deo 98.13
3rf0_A209 Exopolyphosphatase; structural genomics, center fo 98.13
3irh_A 480 HD domain protein; phosphohydrolase, dntpase, stru 98.04
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 98.04
4dmb_A204 HD domain-containing protein 2; structural genomic 97.94
3mem_A457 Putative signal transduction protein; structural g 97.9
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 97.78
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 97.61
1ynb_A173 Hypothetical protein AF1432; structural genomics, 97.41
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 97.41
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 97.3
1f0j_A377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 97.09
1y2k_A349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 97.04
2our_A331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 97.04
1tbf_A347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 97.0
2r8q_A359 Class I phosphodiesterase PDEB1; leishimaniasis, p 96.98
1taz_A365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 96.77
1zkl_A353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 96.66
3bg2_A 444 DGTP triphosphohydrolase; structural genomics, NYS 96.64
3sk9_A265 Putative uncharacterized protein TTHB187; crispr, 96.58
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 96.04
2pgs_A 451 Putative deoxyguanosinetriphosphate triphosphohyd; 95.97
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 95.97
3kq5_A 393 Hypothetical cytosolic protein; structural genomic 95.89
3qi3_A533 High affinity CGMP-specific 3',5'-cyclic phosphod 95.57
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 95.4
3itu_A345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 95.2
3v93_A345 Cyclic nucleotide specific phosphodiesterase; para 95.13
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 94.86
3hr1_A380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 94.8
3dyn_A329 High affinity CGMP-specific 3',5'-cyclic phosphod 94.78
3m5f_A244 Metal dependent phosphohydrolase; CAS3, prokaryoti 94.23
3g4g_A421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 93.94
3ecm_A338 High affinity CAMP-specific and IBMX-insensitive 3 93.78
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 93.57
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 93.4
2ibn_A250 Inositol oxygenase; reductase, DIIRON, structural 91.26
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 90.0
1so2_A 420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 89.88
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
Probab=100.00  E-value=4.3e-58  Score=376.81  Aligned_cols=210  Identities=38%  Similarity=0.636  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH-HHHHH
Q 027623            2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE-KIVEN   80 (221)
Q Consensus         2 ~~~i~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~-~~a~~   80 (221)
                      +++|+++++||+++|.+++++|++.|+.||+.+|..|+..++     .|++++.+||||||||+.++..+...+ ..+.+
T Consensus         4 ~~~i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~-----~d~~~l~~AalLHDig~~k~~~~~~~ga~~a~~   78 (223)
T 3dto_A            4 QAILQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEK-----VDVFVVQIAALFHDLIDDKLVDDPETAKQQLID   78 (223)
T ss_dssp             HHHHHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHSTTC-------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence            368999999999999989999999999999999999999887     799999999999999998765443444 89999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCCCCCCCCC
Q 027623           81 FLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRS  160 (221)
Q Consensus        81 ~L~~~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~~~~~~~~  160 (221)
                      +|.+.|+|++.++.|+++|.+|+++.+.++   .|.+++++||+|||+||+||++||+|||.|+|.+|+++|+|++||+.
T Consensus        79 ~L~~~g~~~~~i~~V~~~I~~Hs~~~~~~~---~p~tlEa~IV~dADrLDalGaiGiaR~f~~~g~~~~~~~~p~~~~~~  155 (223)
T 3dto_A           79 WMEAAGVPSQKIDHTMDIINTISFKGGHGQ---SLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRE  155 (223)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHGGGSSHHHHHHHHHHHHHHTCCSCCTTSCCCC
T ss_pred             HHHHcCCCHHHHHHHHHHHHHcCCccCCCC---CCCCHHHHHHHhHHHHHHHHhhHHHHHHHHHHHcCCcccCccccccc
Confidence            999999999999999999999999875422   58899999999999999999999999999999999999999999999


Q ss_pred             cccHHHhhhhccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027623          161 DVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK  220 (221)
Q Consensus       161 ~~~~~~y~~~~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~~~  220 (221)
                      .++.++| +....++|+||||||++|++.|+|++||++|++|++||++|+++|.+||+|.
T Consensus       156 ~~~~~~y-r~~~~~~i~Hf~eKLl~l~~~m~T~~gr~~A~~R~~~m~~fl~~~~~E~~~~  214 (223)
T 3dto_A          156 TMTVEEY-RHGKSTAINHFYEKLFKLKDLMNTETGKQLAKERHVFMEQFIERFLSEWNGD  214 (223)
T ss_dssp             C--SHHH-HTCCCCHHHHHHHTGGGCTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             cccHHHh-hccchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999 6677899999999999999999999999999999999999999999999985
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Back     alignment and structure
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Back     alignment and structure
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Back     alignment and structure
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Back     alignment and structure
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Back     alignment and structure
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii} Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 221
d3djba1213 a.211.1.1 (A:2-214) Uncharacterized protein BT9727 1e-64
d2qgsa1216 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 8e-63
d2pjqa1215 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 4e-60
d3dtoa1212 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 4e-58
d2pq7a1217 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {U 4e-52
d3b57a1201 a.211.1.1 (A:1-201) Uncharacterized protein Lin188 8e-48
d2o6ia1 453 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {E 1e-04
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Length = 213 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein BT9727 1981
species: Bacillus thuringiensis [TaxId: 1428]

 Score =  197 bits (502), Expect = 1e-64
 Identities = 89/220 (40%), Positives = 140/220 (63%), Gaps = 10/220 (4%)

Query: 2   ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
           + ++ K    V+  ++ + + HD  H+ RV  +A+SL+ +EG      +  I+E+AALLH
Sbjct: 3   QEKIEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGG-----NRFIIEMAALLH 57

Query: 62  DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEF 120
           D+ D K         K V ++LE+  +EE +   +L+II  M +K    G      S E 
Sbjct: 58  DVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMSYK---GGHGGKVESIEG 114

Query: 121 GVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFH 180
            +VQDADRLDA+GAIGIAR F +GG++ R+++DP I PR  ++K++Y +K    ++NHF+
Sbjct: 115 KLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPREVMTKDEY-RKNNDPSLNHFY 173

Query: 181 EKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220
           EKLLKLKDLM T A ++ AE RH++ME+F+ +F +EW+ +
Sbjct: 174 EKLLKLKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQ 213
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Length = 216 Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Length = 215 Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Length = 212 Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Length = 217 Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Length = 201 Back     information, alignment and structure
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Length = 453 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 100.0
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 100.0
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 100.0
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 100.0
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 100.0
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 100.0
d1u6za1197 Exopolyphosphatase Ppx C-terminal domain {Escheric 98.25
d2heka1 369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 98.1
d2o6ia1 453 Hypothetical protein EF1143 {Enterococcus faecalis 97.92
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 97.81
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 97.76
d1vqra_286 Hypothetical protein Cj0248 {Campylobacter jejuni 97.43
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 97.29
d1tbfa_326 cGMP-specific 3',5'-cyclic phosphodiesterase pde5a 96.33
d3dy8a1324 High-affinity cGMP-specific 3',5'-cyclic phosphodi 95.94
d1y2ka1326 Catalytic domain of cyclic nucleotide phosphodiest 95.23
d1taza_357 Catalytic domain of cyclic nucleotide phosphodiest 94.91
d1so2a_ 415 cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p 92.69
d1vj7a1192 Stringent response-like protein RelA N-terminal do 90.38
d2ibna1249 Myo-inositol oxygenase MioX {Human (Homo sapiens) 83.4
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein BT9727 1981
species: Bacillus thuringiensis [TaxId: 1428]

Probab=100.00  E-value=6.1e-61  Score=389.26  Aligned_cols=210  Identities=42%  Similarity=0.715  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH-HHHHH
Q 027623            2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE-KIVEN   80 (221)
Q Consensus         2 ~~~i~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~-~~a~~   80 (221)
                      +++|+++++||++.|.+++++|||.|+.||+++|..|+..++     .|.++|.+||||||||+.++......+ ..+++
T Consensus         3 ~e~i~~~~~~vk~~~~~~~~~Hd~~Hi~RV~~~A~~Ia~~e~-----~D~~vv~~AAlLHDig~~k~~~~~~~~~~~a~~   77 (213)
T d3djba1           3 QEKIEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEG-----GNRFIIEMAALLHDVADEKLNESEEAGMKKVSD   77 (213)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTC-----SCHHHHHHHHTTHHHHC--CCSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhccccccccchhhhHHHHHH
Confidence            478999999999999999999999999999999999999887     799999999999999998865444444 88999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCCCCCCCCC
Q 027623           81 FLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRS  160 (221)
Q Consensus        81 ~L~~~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~~~~~~~~  160 (221)
                      +|.++|+|++.++.|+.+|.+|||+.+..   ..|.+++++||+|||+||+||++||+|||.|+|..++++|+|+.+++.
T Consensus        78 ~L~~~g~~~~~i~~V~~~I~~hs~s~~~~---~~~~t~e~~Iv~DADrLDalGaiGIaR~f~~~g~~~~~~~~p~~~~~~  154 (213)
T d3djba1          78 WLEELHVEEEESKHVLHIIANMSYKGGHG---GKVESIEGKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPRE  154 (213)
T ss_dssp             HHHHTCCCHHHHHHHHHHTTCCC--------------HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHTCCSCCTTSCCC-
T ss_pred             HHHHCCCCHHHHHHHHHHHHHhCcccCCC---CCCCCHHHHHHHHHHHHhhccchhHHHHHHHHHhhCCcccCccccccc
Confidence            99999999999999999999999987542   367899999999999999999999999999999999999999999999


Q ss_pred             cccHHHhhhhccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027623          161 DVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK  220 (221)
Q Consensus       161 ~~~~~~y~~~~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~~~  220 (221)
                      ..+.++| +....++|+||+|||++|++.|+|++||++|++|+++|.+|+++|.+||+|+
T Consensus       155 ~~~~~~~-~~~~~~~i~Hf~eKLl~l~~~m~T~~gr~~A~~R~~~m~~Fl~~~~~Ew~g~  213 (213)
T d3djba1         155 VMTKDEY-RKNNDPSLNHFYEKLLKLKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQ  213 (213)
T ss_dssp             ------------CCTTHHHHHHTGGGTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccHHHh-hcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            8889999 6677889999999999999999999999999999999999999999999985
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure