Citrus Sinensis ID: 027638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKVWFS
Secondary Structure (PSIPRED)
ccEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEEEEEEEEcEEEEcccEEEEEEEEEEccEEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccEEEEEEccccEEcccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccEEEEEEEEEccccccEEEEEEEEccEEEEEEccEEEEcccEEEEEEEEEEcccEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccEEEEEEEHHHHHHccccEEEEcc
Coil and Loop (DISEMBL)
msaagelkigtssfgasahythrfskkshgriqgrlGSTALELevgggrkiseFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLsrhfssffatgafiiPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKlgetgessdELASQVLDvtlplnflvndsgrlkvwfs
Flexible Loop (DISEMBL)
msaagelkigtssfgasahythrfskkshgriqgRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANrkrnkqleiggliitkavYGARKALTKlgetgessdELASQVLDVTLPlnflvndsgrlkvwfs
Low Complexity Region (SEG)
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSaqvqeakaaaqkaqqllqnvanRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKVWFS
Disordered region (IsUnstruct)
**********************************RLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK*****************************************QLEIGGLIITKAVYGARKALTKL**********ASQVLDVTLPLNFLVNDSGRLKVWF*
Disordered Region (DISOPRED)
**AAGELKIGTSSFGASAHYTHRFSK*SH*RIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYY************************************************GLIITKAVYGAR*****************SQVLDVTLPLNFLVNDSGRLKVW**
Disordered Region (DISEMBL)
MSAAGELKIGTSSFGASAHYTHR*********QGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENM*****************QQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKL********ELASQVLDVTLPLNFLVNDSGRLKVWFS
Disordered Region (DISPRO)
*SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA**************ASQVLDVTLPLNFLVNDSGRLKVWF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKVWFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q39079	538	Chaperone protein dnaJ 13	yes	no	0.972	0.399	0.655	5e-80
Q9NVH1	559	DnaJ homolog subfamily C	yes	no	0.886	0.350	0.336	2e-17
Q5RC70	559	DnaJ homolog subfamily C	yes	no	0.886	0.350	0.331	4e-17
Q5U458	559	DnaJ homolog subfamily C	yes	no	0.886	0.350	0.327	2e-16
Q2NL21	559	DnaJ homolog subfamily C	yes	no	0.886	0.350	0.322	1e-15
Q54PV9	575	DnaJ homolog subfamily C	yes	no	0.737	0.283	0.325	3e-13
Q9Y7T0	612	Uncharacterized J domain-	yes	no	0.751	0.271	0.266	2e-06

>sp|Q39079|DNJ13_ARATH Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2

 Score =  296 bits (759), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/218 (65%), Positives = 177/218 (81%), Gaps = 3/218 (1%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           +SAAG+ KI +   GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct: 273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y+VG++GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY L
Sbjct: 333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           KREKQKALENMEKT  QV EA+A A+KAQQLLQ VA RK+N+Q+E  GLI+TKA+YG  K
Sbjct: 393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           A+ +  E  E  D   S V+DVT+P+NFLV+DSG+LK+
Sbjct: 453 AIERRNEGVEGLD---SGVIDVTVPMNFLVSDSGQLKL 487

Have a continuous role in plant development probably in the structural organization of compartments (By similarity). Seems to be involved in resistance to oxidative stresses mediated by thiol-oxidizing agents such as diamide.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVH1|DJC11_HUMAN DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 18/214 (8%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKP-YL 412

Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   +++A  V + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                + +    S+++  +V+DVT+PL  LV DS
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 499

Homo sapiens (taxid: 9606)

>sp|Q5RC70|DJC11_PONAB DnaJ homolog subfamily C member 11 OS=Pongo abelii GN=DNAJC11 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 18/214 (8%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---MGPLVVYFAMHRLIIKP-YL 412

Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   +++A  V + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                + +    S+++  +V+DVT+PL  LV DS
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 499

Pongo abelii (taxid: 9601)

>sp|Q5U458|DJC11_MOUSE DnaJ homolog subfamily C member 11 OS=Mus musculus GN=Dnajc11 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 18/214 (8%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   E T++ + + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYG-- 470

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
           K +       E       +V+DVT+PL  LV DS
Sbjct: 471 KFVNDKSRKNEK-----VKVIDVTVPLQCLVKDS 499

Mus musculus (taxid: 10090)

>sp|Q2NL21|DJC11_BOVIN DnaJ homolog subfamily C member 11 OS=Bos taurus GN=DNAJC11 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 18/214 (8%)

Query: 7   LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
           L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query: 65  I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
           + QG+  K +L+RA Q    PI L+      + F+AT     P  +YF L + +++P YL
Sbjct: 357 VPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAG---PLVLYFALHRLVIRP-YL 412

Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
           + +K+K LE   E T+  + + K  A+ A +L+Q    R    +    GLII  A YG  
Sbjct: 413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                     +S      +V+DVT+PL  LV DS
Sbjct: 473 V-------NDKSKKSEKVKVIDVTVPLQCLVKDS 499

Bos taurus (taxid: 9913)

>sp|Q54PV9|DJC11_DICDI DnaJ homolog subfamily C member 11 homolog OS=Dictyostelium discoideum GN=dnajc11 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 45  VGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPA 104
           +G  RKI++   I +   V      +   LH   Q L +PI +    S   +   F +PA
Sbjct: 352 IGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPA 411

Query: 105 SVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQL 164
               LLK  ++KP   K+E++K +E  EK + Q ++AK  A+    L++ +   K  K+ 
Sbjct: 412 VTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEK 471

Query: 165 EIGGLIITKAVYGARKALTKLGETGESSDELASQ---VLDVTLPLNFLVNDS 213
              GLII +AVYG      KL E  + SD  + +    +DVT+PL +LV DS
Sbjct: 472 TKNGLIIQEAVYG------KLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDS 517

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y7T0|YCJ3_SCHPO Uncharacterized J domain-containing protein C63.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC63.03 PE=3 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 38  STALELEVGGG--RKISEFSTIRMLYSVGIQ--GIFWKFELHRAGQKLVVPILLSRHFSS 93
           ST   L+V G   RK+  +ST  +  SVG+    I +     R GQK+ +PI+    F  
Sbjct: 384 STVGGLQVSGDTSRKVGRYSTFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDR 443

Query: 94  FFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ 153
                  + P +    +++F L+P  L  +K+  L  ++K     +  K +A +A +L++
Sbjct: 444 SAVFWGLVFPITSILGVEQFFLRPRRLSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMK 503

Query: 154 NVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
            +  +K+  ++E GGL+I  A Y       ++   G +  +L     DVT+ +  LV +S
Sbjct: 504 EIVEKKQKLEMEKGGLVIEYAEY-------RVVNCGANEPDLKQ---DVTISIAALVENS 553

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
225426989	537	PREDICTED: chaperone protein dnaJ 13 [Vi	0.972	0.400	0.766	3e-95
255576058	542	Chaperone protein dnaJ, putative [Ricinu	0.986	0.402	0.761	8e-95
224138588	540	predicted protein [Populus trichocarpa]	0.986	0.403	0.733	1e-90
449504996	539	PREDICTED: chaperone protein dnaJ 13-lik	0.981	0.402	0.741	5e-89
449458944	456	PREDICTED: chaperone protein dnaJ 13-lik	0.972	0.471	0.737	6e-87
224074151	539	predicted protein [Populus trichocarpa]	0.981	0.402	0.700	6e-86
356497147	540	PREDICTED: chaperone protein dnaJ 13-lik	0.981	0.401	0.668	6e-82
326521170	540	predicted protein [Hordeum vulgare subsp	0.981	0.401	0.635	8e-81
242034011	540	hypothetical protein SORBIDRAFT_01g01759	0.981	0.401	0.626	1e-79
78708888	540	Chaperone protein dnaJ 13, putative, exp	0.981	0.401	0.626	3e-79

>gi|225426989|ref|XP_002270066.1| PREDICTED: chaperone protein dnaJ 13 [Vitis vinifera] gi|297741195|emb|CBI31926.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 193/218 (88%), Gaps = 3/218 (1%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSA+GELK GTSSFGA+A Y  RFS KSHGRI GR+GS+ALE+EVGGGRK+S+FST+RML
Sbjct: 270 MSASGELKFGTSSFGATASYIRRFSSKSHGRIAGRVGSSALEIEVGGGRKLSDFSTVRML 329

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           YS+GIQGI+WK E HR GQKL++PILLSR   + FATGAF+IP S+YFLLKKFI+KPYYL
Sbjct: 330 YSIGIQGIYWKIEFHRGGQKLIIPILLSRQLDTVFATGAFMIPTSIYFLLKKFIVKPYYL 389

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQK LEN+EKTS QVQEA+AAA+KAQQLLQNVANRKRN+QLE GGL+ITKAVYG RK
Sbjct: 390 RREKQKKLENIEKTSVQVQEARAAAEKAQQLLQNVANRKRNRQLETGGLVITKAVYGNRK 449

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           AL    E GE  D+LASQV+DVTLPLNFLVNDSG+LK+
Sbjct: 450 ALN---EPGEGDDQLASQVVDVTLPLNFLVNDSGQLKL 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576058|ref|XP_002528924.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223531626|gb|EEF33453.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 194/218 (88%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSAAGELKIGTSSFGASAHYTHRFS KSHGRI GR GSTALE+EVGGGRK+S+FST+R+L
Sbjct: 272 MSAAGELKIGTSSFGASAHYTHRFSSKSHGRIAGRFGSTALEMEVGGGRKLSDFSTVRIL 331

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y+VGIQGIFWKFELHR GQKL++P+LLSR+ +  FATGAF++P S+YF+LKK I KPYYL
Sbjct: 332 YTVGIQGIFWKFELHRGGQKLIIPVLLSRNLNLAFATGAFLVPTSLYFILKKLIFKPYYL 391

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQKALEN  KTSAQVQEA+  A+KAQQLLQNVANRKRNKQ+E  GLIITKA+YG+ K
Sbjct: 392 RREKQKALENNVKTSAQVQEARTGAEKAQQLLQNVANRKRNKQVETNGLIITKALYGSLK 451

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           AL +  E+ E + EL S+V+DVT+PLNFLVNDSGRLK+
Sbjct: 452 ALKRRAESTEVNGELVSEVIDVTIPLNFLVNDSGRLKL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138588|ref|XP_002326640.1| predicted protein [Populus trichocarpa] gi|222833962|gb|EEE72439.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/218 (73%), Positives = 189/218 (86%)

Query: 1   MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
           MSA+GELKIGTSSF ASAHYTHRFS KSHGRI GR GST LE+EVGGGRK+S FST+RML
Sbjct: 270 MSASGELKIGTSSFAASAHYTHRFSSKSHGRIAGRFGSTNLEVEVGGGRKLSNFSTVRML 329

Query: 61  YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
           Y++GIQGIFWKFELHR GQKL++P+LLSRH +  FATGAF+IP S+YFLLKKF++KPYYL
Sbjct: 330 YTIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFATGAFVIPTSLYFLLKKFVVKPYYL 389

Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
           +REKQK LEN E+ SAQVQEA+AAA+KAQQLL+ VANRK +K LE   L+ITKAVYG+ K
Sbjct: 390 QREKQKTLENKERNSAQVQEARAAAEKAQQLLKIVANRKISKHLETNELVITKAVYGSSK 449

Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           AL K  E+ E + E AS+V DVT+PLNFL+NDSG+LK+
Sbjct: 450 ALKKADESREVNKESASEVFDVTIPLNFLINDSGQLKL 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504996|ref|XP_004162349.1| PREDICTED: chaperone protein dnaJ 13-like [Cucumis sativus]

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 188/217 (86%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           S AGE+K  TSSFGASAHYTHRFS KSHGRI GR+GST LELE+GGGRK+S+FST+RMLY
Sbjct: 272 SVAGEVKFSTSSFGASAHYTHRFSSKSHGRIAGRVGSTMLELELGGGRKLSKFSTVRMLY 331

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           S+GIQGIFWKFELHR GQKL++PIL+SRH +  FA GAFI P S YFLLKKF++KPYY +
Sbjct: 332 SIGIQGIFWKFELHRGGQKLIIPILISRHLNPIFAAGAFIFPTSAYFLLKKFLVKPYYQR 391

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQKALENM+KTSAQV EA+A A+KAQQLLQNVANRKRN+Q EI GL+ITKA+YG +K 
Sbjct: 392 REKQKALENMQKTSAQVLEARAGAEKAQQLLQNVANRKRNRQSEISGLVITKAIYGNQKD 451

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           L K  E  E +DEL+  ++DVTLPLNFLVNDSG+LK+
Sbjct: 452 LKKKDELKEPNDELSLSIVDVTLPLNFLVNDSGQLKL 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458944|ref|XP_004147206.1| PREDICTED: chaperone protein dnaJ 13-like [Cucumis sativus]

 Score =  325 bits (834), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 186/217 (85%), Gaps = 2/217 (0%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           S AGE    TSSFGASAHYTHRFS KSHGRI GR+GST LELE+GGGRK+S+FST+RMLY
Sbjct: 191 SVAGEFS--TSSFGASAHYTHRFSSKSHGRIAGRVGSTMLELELGGGRKLSKFSTVRMLY 248

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           S+GIQGIFWKFELHR GQKL++PIL+SRH +  FA GAFI P S YFLLKKF++KPYY +
Sbjct: 249 SIGIQGIFWKFELHRGGQKLIIPILISRHLNPIFAAGAFIFPTSAYFLLKKFLVKPYYQR 308

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQKALENM+KTSAQV EA+A A+KAQQLLQNVANRKRN+Q EI GL+ITKA+YG +K 
Sbjct: 309 REKQKALENMQKTSAQVLEARAGAEKAQQLLQNVANRKRNRQSEISGLVITKAIYGNQKD 368

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           L K  E  E +DEL+  ++DVTLPLNFLVNDSG+LK+
Sbjct: 369 LKKKDELKEPNDELSLSIVDVTLPLNFLVNDSGQLKL 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074151|ref|XP_002304275.1| predicted protein [Populus trichocarpa] gi|222841707|gb|EEE79254.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 186/217 (85%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SA+GELKIGTSSF ASAHYT RFS KSHGRI GR GST LE+EVGGGRK+S FST+R LY
Sbjct: 271 SASGELKIGTSSFAASAHYTCRFSSKSHGRIAGRFGSTMLEVEVGGGRKLSNFSTVRTLY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQGIFWKFELHR GQKL++P+LLSRH +  FA GAF+IP S+YFLLKKF++K YYL+
Sbjct: 331 TIGIQGIFWKFELHRGGQKLIIPMLLSRHLNPVFAIGAFVIPTSLYFLLKKFVVKSYYLR 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK  E  E++SAQV+EA+ AA+KAQQLLQ VANRKR++QLE  GL+ITKAVYG  KA
Sbjct: 391 REKQKTSEIKERSSAQVREARIAAEKAQQLLQTVANRKRSRQLETNGLVITKAVYGNSKA 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           L K  ++ E ++E AS+V+DVT+PLNFL+NDSG+L++
Sbjct: 451 LKKADKSREVNNESASEVIDVTIPLNFLINDSGQLQL 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497147|ref|XP_003517424.1| PREDICTED: chaperone protein dnaJ 13-like [Glycine max]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 145/217 (66%), Positives = 182/217 (83%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SA+GE+K GT SF  S HYTHRFS KS G I GR+GS++LE+EVGGGRK+S+FS++R LY
Sbjct: 271 SASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
            +GIQGI WKFEL+R GQKL++PILL+RH +  FATGAF++PAS+YF+LKK  +KPYYL+
Sbjct: 331 IIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLR 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           R KQKALE  EKTSAQV+EA+A A+KAQ L QNVANRKRNKQLE GGL+I +A+YG ++ 
Sbjct: 391 RNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRI 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           L  L  + E+S EL S+V+DVT+PLNFLVNDSG+LK+
Sbjct: 451 LNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKL 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521170|dbj|BAJ96788.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 138/217 (63%), Positives = 183/217 (84%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SAAGE+K GT+SFGASAHYTHRFS KSHGR+ GR+GSTAL+ E+GGGR+ISEFST+RMLY
Sbjct: 271 SAAGEIKFGTNSFGASAHYTHRFSSKSHGRVAGRVGSTALDFEIGGGRRISEFSTVRMLY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQG+ W+FEL+RAGQKLV+P+LLS  F++ F TGAF IP+++YFLL+ +++KPYYL+
Sbjct: 331 NIGIQGVTWRFELNRAGQKLVIPVLLSTDFNALFVTGAFAIPSTLYFLLQTYLVKPYYLR 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK LE M+  S Q+ EA+ AA+K+Q+LL+ V+NRK+NKQ E  GL+ITKA+YG  K 
Sbjct: 391 REKQKTLEKMDSLSTQLTEARQAAKKSQRLLEPVSNRKKNKQQESDGLVITKALYGNHKK 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           + +  +  E  D +ASQVLDVT+PLNFLV ++G+LK+
Sbjct: 451 IKESSQLSEIDDNVASQVLDVTIPLNFLVTEAGQLKL 487

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034011|ref|XP_002464400.1| hypothetical protein SORBIDRAFT_01g017590 [Sorghum bicolor] gi|241918254|gb|EER91398.1| hypothetical protein SORBIDRAFT_01g017590 [Sorghum bicolor]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 136/217 (62%), Positives = 180/217 (82%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           +A GE+K GT+ FGASAHYTHRFS KSH R+ GR+GSTAL+ E+GGGR+ISEFSTIRM+Y
Sbjct: 271 TATGEVKFGTNFFGASAHYTHRFSSKSHARVAGRVGSTALDFEIGGGRRISEFSTIRMMY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQG+ W+FELHRAGQKL++P+LLS   ++ F T AF IP+++YFLL+ +++KPYYLK
Sbjct: 331 NIGIQGVSWRFELHRAGQKLIIPVLLSADLNALFVTSAFAIPSTLYFLLQTYVVKPYYLK 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK LE ME  SAQ+ EA+ AA+KAQ+LL+ V+NRK+N+QLE  GL+ITKA+YG+ K 
Sbjct: 391 REKQKTLEKMEGLSAQLTEARKAAEKAQKLLEPVSNRKKNRQLENNGLVITKALYGSCKK 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           + +  E  E   ++ASQV DVT+PLNFLV D+G+LK+
Sbjct: 451 IKESSELNEIHSDMASQVFDVTIPLNFLVTDAGQLKL 487

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78708888|gb|ABB47863.1| Chaperone protein dnaJ 13, putative, expressed [Oryza sativa Japonica Group] gi|215694809|dbj|BAG90000.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/217 (62%), Positives = 184/217 (84%)

Query: 2   SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLY 61
           SAAG++K+GT+ FGASAHYT  FS KSHGR+ GR+GSTAL+ E+GGGR+ISEFST+RM+Y
Sbjct: 271 SAAGDVKLGTNYFGASAHYTRYFSTKSHGRVAGRVGSTALDFEIGGGRRISEFSTVRMIY 330

Query: 62  SVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLK 121
           ++GIQG+ W+FELHRAGQKLV+P+LLS  F++  AT  F IP+++YFLL+ + +KPY LK
Sbjct: 331 NIGIQGVSWRFELHRAGQKLVIPVLLSTDFNALLATSVFAIPSTLYFLLQTYFVKPYCLK 390

Query: 122 REKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKA 181
           REKQK LE ME  S+Q+ EA+ AA+KAQ+LL+ V+NRK+N+QLE  GL+ITKA+YG RK 
Sbjct: 391 REKQKELEKMESLSSQLTEARRAAKKAQKLLEPVSNRKKNRQLEDDGLVITKALYGNRKK 450

Query: 182 LTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
           + +  E+ E +D++ASQVLDVT+PLNFLV+++G+LK+
Sbjct: 451 VKESSESNELNDDVASQVLDVTIPLNFLVSEAGQLKL 487

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2058704	538	OWL1 "AT2G35720" [Arabidopsis	0.972	0.399	0.587	7.6e-64
UNIPROTKB|F1PDH1	559	DNAJC11 "Uncharacterized prote	0.886	0.350	0.308	4.1e-15
UNIPROTKB|F5H1N1	521	DNAJC11 "DnaJ homolog subfamil	0.886	0.376	0.308	4.5e-15
UNIPROTKB|Q9NVH1	559	DNAJC11 "DnaJ homolog subfamil	0.886	0.350	0.308	5.2e-15
UNIPROTKB|Q2NL21	559	DNAJC11 "DnaJ homolog subfamil	0.886	0.350	0.294	1.4e-14
UNIPROTKB|F1RIJ5	390	DNAJC11 "Uncharacterized prote	0.886	0.502	0.299	3.6e-14
UNIPROTKB|F1NUM7	561	DNAJC11 "Uncharacterized prote	0.886	0.349	0.285	4.9e-14
MGI|MGI:2443386	559	Dnajc11 "DnaJ (Hsp40) homolog,	0.886	0.350	0.289	3.6e-13
RGD|1307731	559	Dnajc11 "DnaJ (Hsp40) homolog,	0.886	0.350	0.289	5.9e-13
DICTYBASE|DDB_G0284263	575	DDB_G0284263 "DNAJ heat shock	0.737	0.283	0.296	1.8e-10

TAIR|locus:2058704 OWL1 "AT2G35720" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 128/218 (58%), Positives = 160/218 (73%)

Query:     1 MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
             +SAAG+ KI +   GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct:   273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332

Query:    61 YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
             Y+VG++GIFWK ELHR  QKL+VPILLS H +  FATGAFI+P S+YFLLKKF++KPY L
Sbjct:   333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIGGLIITKAVYGARK 180
             KREKQKALENMEKT                       RK+N+Q+E  GLI+TKA+YG  K
Sbjct:   393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452

Query:   181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
             A+ +  E  E  D   S V+DVT+P+NFLV+DSG+LK+
Sbjct:   453 AIERRNEGVEGLD---SGVIDVTVPMNFLVSDSGQLKL 487

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0055122 "response to very low light intensity stimulus" evidence=IMP

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F1PDH1 DNAJC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 66/214 (30%), Positives = 101/214 (47%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF L + ++KPY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYFALHRLVIKPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +  + S+++  +V+DVT+PL  LV DS
Sbjct:   473 -----VNDKSKKSEKV--KVIDVTVPLQCLVKDS 499

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F5H1N1 DNAJC11 "DnaJ homolog subfamily C member 11" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 66/214 (30%), Positives = 100/214 (46%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   259 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 318

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KPY L
Sbjct:   319 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKPY-L 374

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   375 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 434

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +    S+++  +V+DVT+PL  LV DS
Sbjct:   435 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 461

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q9NVH1 DNAJC11 "DnaJ homolog subfamily C member 11" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 66/214 (30%), Positives = 100/214 (46%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    SVG
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VYF + + I+KPY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +    S+++  +V+DVT+PL  LV DS
Sbjct:   473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 499

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2NL21 DNAJC11 "DnaJ homolog subfamily C member 11" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT     P  +YF L + +++PY L
Sbjct:   357 VPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAG---PLVLYFALHRLVIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +  + S+++  +V+DVT+PL  LV DS
Sbjct:   473 -----VNDKSKKSEKV--KVIDVTVPLQCLVKDS 499

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1RIJ5 DNAJC11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 64/214 (29%), Positives = 99/214 (46%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +  + SVG
Sbjct:   128 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVG 187

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  +YF + + ++KPY L
Sbjct:   188 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVLYFAMHRLVIKPY-L 243

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   +++                      R+  +  E   GLII  A YG  
Sbjct:   244 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYG-- 301

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
             K ++   +  E       + +DVT+PL  LV DS
Sbjct:   302 KFVSDRSKRHERV-----KAIDVTVPLQCLVRDS 330

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1NUM7 DNAJC11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 61/214 (28%), Positives = 100/214 (46%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G         Y H+F  +   RI+G L  G     +E G  RKIS  S +    SVG
Sbjct:   299 LQLGIPHSFMMVSYQHKFQDEDQTRIKGSLKAGFFGTIVEYGAERKISRHSILGATVSVG 358

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    P+ L+      + F+AT   + P  +YF + + I+KPY L
Sbjct:   359 VPQGVSLKIKLNRASQTYFFPVHLTDQLLPSAVFYAT---VGPLVIYFAMHRLIIKPY-L 414

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K++ LE   +++                      R+  +  E   GLI+  A YG  
Sbjct:   415 RAQKERELEKQRESTASDILQKKQEAEAAVRLMQESVRRIIEAEEARMGLIVVNAWYGKF 474

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +    ++++  +V+DVT+PL  LV DS
Sbjct:   475 -----VNDNSRKNEKV--KVIDVTVPLQCLVKDS 501

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:2443386 Dnajc11 "DnaJ (Hsp40) homolog, subfamily C, member 11" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 62/214 (28%), Positives = 98/214 (45%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   + +                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +    ++++  +V+DVT+PL  LV DS
Sbjct:   473 -----VNDKSRKNEKV--KVIDVTVPLQCLVKDS 499

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

RGD|1307731 Dnajc11 "DnaJ (Hsp40) homolog, subfamily C, member 11" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 62/214 (28%), Positives = 98/214 (45%)

Query:     7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
             L++G     A   Y H+F      R++G L  G     +E G  RKIS  S +    S+G
Sbjct:   297 LQLGIPHSFALISYQHKFQDDDQTRLKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356

Query:    65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
             + QG+  K +L+RA Q    PI L+      + F+AT   + P  VY  + + I++PY L
Sbjct:   357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412

Query:   121 KREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQLEIG-GLIITKAVYGAR 179
             + +K+K LE   + +                      R+  +  E   GLII  A YG  
Sbjct:   413 RAQKEKDLEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472

Query:   180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
                  + +    ++++  +V+DVT+PL  LV DS
Sbjct:   473 -----VNDKSRKNEKV--KVIDVTVPLQCLVKDS 499

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

DICTYBASE|DDB_G0284263 DDB_G0284263 "DNAJ heat shock N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 51/172 (29%), Positives = 75/172 (43%)

Query:    45 VGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPA 104
             +G  RKI++   I +   V      +   LH   Q L +PI +    S   +   F +PA
Sbjct:   352 IGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPA 411

Query:   105 SVYFLLKKFILKPYYLKREKQKALENMEKTSXXXXXXXXXXXXXXXXXXXXXXRKRNKQL 164
                 LLK  ++KP   K+E++K +E  EK +                       K  K+ 
Sbjct:   412 VTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEK 471

Query:   165 EIGGLIITKAVYGARKALTKLGETGESSDELASQ---VLDVTLPLNFLVNDS 213
                GLII +AVYG      KL E  + SD  + +    +DVT+PL +LV DS
Sbjct:   472 TKNGLIIQEAVYG------KLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDS 517

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009601001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (537 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
pfam11875	144	pfam11875, DUF3395, Domain of unknown function (DU	6e-20

>gnl|CDD|221283 pfam11875, DUF3395, Domain of unknown function (DUF3395)

 Score = 82.0 bits (203), Expect = 6e-20
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVY 176
           P+   ++K++     EK   ++ + K  A+ A  L+ +V  RK  ++ E GGL+I KA Y
Sbjct: 1   PFNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEEKGGLVILKAYY 60

Query: 177 GARKALTKLGETGESSDELASQ-VLDVTLPLNFLVNDS 213
           G       L   G++ + + ++ V+DVT+PL  LV DS
Sbjct: 61  G------HLDSKGKAQNNVENEEVIDVTIPLQALVRDS 92

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 147 to 176 amino acids in length. This domain is found associated with pfam00226. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PF11875	151	DUF3395: Domain of unknown function (DUF3395); Int	99.96
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	96.02
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	95.4
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	95.39
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	94.89
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	94.67
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	94.58
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	94.53
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	94.29
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	94.07
PRK06568	154	F0F1 ATP synthase subunit B; Validated	93.15
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	93.09
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	92.73
PRK05759	156	F0F1 ATP synthase subunit B; Validated	92.66
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	92.62
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	91.63
PRK06231	205	F0F1 ATP synthase subunit B; Validated	91.53
PRK07352	174	F0F1 ATP synthase subunit B; Validated	91.09
PRK09173	159	F0F1 ATP synthase subunit B; Validated	91.08
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	90.27
PRK08475	167	F0F1 ATP synthase subunit B; Validated	90.02
CHL00019	184	atpF ATP synthase CF0 B subunit	88.67
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	87.04
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	87.02
PRK06531	113	yajC preprotein translocase subunit YajC; Validate	86.59
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	84.86
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	84.18
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	84.17
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	83.79
COG1862	97	YajC Preprotein translocase subunit YajC [Intracel	83.53
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	83.06

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-56  Score=411.33  Aligned_cols=211  Identities=37%  Similarity=0.526  Sum_probs=199.2

Q ss_pred             ceeEEEEEcccceeEEEEEEEecCCC--ceeeEEEEEccccceeEEeeeeeeccceeEEEEEEEeee-eeEEEEEEEEcc
Q 027638            2 SAAGELKIGTSSFGASAHYTHRFSKK--SHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQ-GIFWKFELHRAG   78 (221)
Q Consensus         2 sw~~~~~~g~~~~~is~~y~r~~~~~--~~~r~~~~~gt~g~~~~~g~~rkvs~~s~vg~~v~ig~~-Gv~lk~~~~R~g   78 (221)
                      +.+.++.+|.++.+....|+|++.++  +++|++.++||+|+.++||++||||+||++|+.+++|++ ||+||++|+|+|
T Consensus       280 s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvSryStv~~~~svgvpsgi~~k~~~~R~~  359 (546)
T KOG0718|consen  280 SLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVSRYSTVGANVSVGVPSGITLKVKLLRAG  359 (546)
T ss_pred             cceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceeeeceeEEEEEEEcCCcceEEEEeeeccC
Confidence            56788999999999999999999987  999999999999999999999999999999999999995 999999999999


Q ss_pred             eEEEEEEEeccCCChhhHHHHhHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027638           79 QKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANR  158 (221)
Q Consensus        79 Q~~~~PI~Ls~~~~~~~~~~a~v~P~~~y~~~~~~v~~P~~r~~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r  158 (221)
                      |+|.|||+||+++.|.++|||+++|.++|+.+++|+++||..++++++.+++++++++.+.++|+||+.|+.||+++|+|
T Consensus       360 Q~~~~pI~l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k~~~~~~~~ek~~~~~~~Kk~eA~~av~LMq~t~~R  439 (546)
T KOG0718|consen  360 QKYSFPIHLCDELLPSAVFYALVFPITSYFGLKKFVLRPYLLKRKKRERLLRREKLKDSVEAKKVEAERAVKLMQETAER  439 (546)
T ss_pred             cEEEEEEEeechhhhhhhhhhhhHHHHHHHHHHHHeecHHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCceEEEEEEecCCCCcccCCCCCCCCccCCCceEEeeeeeeeeeecCCcEEEec
Q 027638          159 KRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKVWF  220 (221)
Q Consensus       159 ~~~~E~~k~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~~~~iDVTIplq~lV~dSgqL~l~~  220 (221)
                      +++.|++|+||||++|+||+....+.       .+..++.+||||||+||||+|| ||.||+
T Consensus       440 i~~~E~~k~GLII~~A~Yg~~~~~~~-------~~~~~~~~iDVTVpiq~lV~~s-qL~l~e  493 (546)
T KOG0718|consen  440 IKKLEEEKGGLIIEYAEYGVVNAGGT-------RANEPELVIDVTVPIQALVKNS-QLALHE  493 (546)
T ss_pred             HHHHHHhcCceEEEEeeecccccccc-------ccCCCcceEEEEEEhhheeccC-eEEeee
Confidence            99999999999999999999876432       1223457999999999999998 999995

>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein

Probab=99.96  E-value=1e-29  Score=207.18  Aligned_cols=103  Identities=38%  Similarity=0.543  Sum_probs=89.5

Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEEEecCCCCcccCCCCCCC-CccC
Q 027638          117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGES-SDEL  195 (221)
Q Consensus       117 P~~r~~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~k~GLVI~~A~YG~~~~~~~~~~~~~~-~~~~  195 (221)
                      |+.++++++++++++++++++++++|+||+++++||+++|+|++++|++++||||++|+||+.++..+...+..+ ....
T Consensus         1 P~~~~~~~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~   80 (151)
T PF11875_consen    1 PYRRRRKKREIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEEKGGLVILKAWYGNLPAKSDESNNDEPEDPDL   80 (151)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEcCCcccccccccccccccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999874332111110 1124


Q ss_pred             CCceEEeeeeeeeeeecCCcEEEec
Q 027638          196 ASQVLDVTLPLNFLVNDSGRLKVWF  220 (221)
Q Consensus       196 ~~~~iDVTIplq~lV~dSgqL~l~~  220 (221)
                      .+++|||||||||||+|| +|+||.
T Consensus        81 ~~~~iDVTipLq~lV~dS-~L~l~~  104 (151)
T PF11875_consen   81 DPPVIDVTIPLQALVKDS-QLILPE  104 (151)
T ss_pred             cCcEEEEhhhhhhEeecC-EEEEcC
Confidence            568999999999999998 999997

DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=96.02  E-value=0.1  Score=41.94  Aligned_cols=69  Identities=14%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhhhHHH----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKRE----------------KQKALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~r~~~----------------~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (221)
                      ++|+..+|-.+.=+++|+++++|+++|..+--+                +.+..+.+++.++.+..+|+||....+-..+
T Consensus         5 l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~   84 (141)
T PRK08476          5 VNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIA   84 (141)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566667777778888889999999999763211                1122233445555566667766666555555


Q ss_pred             HHHHH
Q 027638          155 VANRK  159 (221)
Q Consensus       155 ~a~r~  159 (221)
                      .|+..
T Consensus        85 ~A~~e   89 (141)
T PRK08476         85 KAKEE   89 (141)
T ss_pred             HHHHH
Confidence            44443

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=95.40  E-value=0.23  Score=41.55  Aligned_cols=26  Identities=15%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             hhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           94 FFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        94 ~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      .-+||..+.=++.|+++++|++.|..
T Consensus        32 ~q~~~~lI~F~iL~~ll~k~l~~PI~   57 (181)
T PRK13454         32 NQIFWLLVTLVAIYFVLTRVALPRIG   57 (181)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888888888889999899965

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=95.39  E-value=0.21  Score=41.30  Aligned_cols=69  Identities=22%  Similarity=0.151  Sum_probs=41.0

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhhhH---HHH-------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYYLK---REK-------------QKALENMEKTSAQVQEAKAAAQKAQQLLQN  154 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~r~---~~~-------------~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~  154 (221)
                      ++|...||-.+.=++.++++.+|+++|..+-   |++             .+..+..+++++++.++|.+|.+.++-.+.
T Consensus        16 ~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~   95 (175)
T PRK14472         16 PNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKE   95 (175)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777877877888888999999996532   111             111222334455556666666655555555


Q ss_pred             HHHHH
Q 027638          155 VANRK  159 (221)
Q Consensus       155 ~a~r~  159 (221)
                      .+++.
T Consensus        96 ~a~~~  100 (175)
T PRK14472         96 YAEKL  100 (175)
T ss_pred             HHHHH
Confidence            54443

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=94.89  E-value=0.31  Score=41.68  Aligned_cols=27  Identities=15%  Similarity=0.041  Sum_probs=21.1

Q ss_pred             hhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           93 SFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        93 ~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      |+-+||-.+.=++.|+++.++++.|..
T Consensus        53 ~~~l~w~~I~FliL~~lL~k~~~~pI~   79 (204)
T PRK09174         53 ASQLLWLAITFGLFYLFMSRVILPRIG   79 (204)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777778888889998888865

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=94.67  E-value=0.49  Score=38.60  Aligned_cols=27  Identities=26%  Similarity=0.166  Sum_probs=21.7

Q ss_pred             hhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           93 SFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        93 ~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      |...||-++.=++.|+++++|+++|..
T Consensus         8 ~~~~~~~~i~Flil~~ll~~~l~~pi~   34 (164)
T PRK14471          8 FGLFFWQTILFLILLLLLAKFAWKPIL   34 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            456777777778888889999999965

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=94.58  E-value=0.54  Score=38.12  Aligned_cols=29  Identities=14%  Similarity=0.130  Sum_probs=23.5

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ++|...+|-++.=+++++++.+|+++|..
T Consensus         3 ~~~~~~~~~~inF~il~~iL~~f~~kpi~   31 (159)
T PRK13461          3 INIPTIIATIINFIILLLILKHFFFDKIK   31 (159)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            57777778777778888889999999965

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=94.53  E-value=0.53  Score=38.86  Aligned_cols=29  Identities=17%  Similarity=0.156  Sum_probs=22.1

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ++|...||.++.=++.++++.+|+++|..
T Consensus        14 ~~~~~~~~~~i~Flil~~iL~~~~~kpi~   42 (173)
T PRK13460         14 VNPGLVVWTLVTFLVVVLVLKKFAWDVIL   42 (173)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45556777777777788888888889965

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=94.29  E-value=0.63  Score=38.49  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=23.9

Q ss_pred             CCChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           90 HFSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        90 ~~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      .++|...||-.+.=+++++++.+|+++|..
T Consensus        15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~   44 (173)
T PRK13453         15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLK   44 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777778777778888899999999966

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=94.07  E-value=0.79  Score=37.36  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ++|...+|-++-=+++++++.+|+++|..
T Consensus         6 ~~~~~~~~~~inflil~~lL~~fl~kpi~   34 (164)
T PRK14473          6 INLGLLIAQLINFLLLIFLLRTFLYRPVL   34 (164)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777777777888889999999965

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=93.15  E-value=1.3  Score=36.43  Aligned_cols=26  Identities=8%  Similarity=-0.171  Sum_probs=20.1

Q ss_pred             hhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           94 FFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        94 ~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ...||-++.=++.++++++|.++|..
T Consensus         5 ~~~fwq~I~FlIll~ll~kfawkPI~   30 (154)
T PRK06568          5 DESFWLAVSFVIFVYLIYRPAKKAIL   30 (154)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            34677777777777889999999965

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=93.09  E-value=1.2  Score=39.29  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ++|..+++-++-=+++++++++|+++|..
T Consensus         3 id~~t~~~qiInFlILv~lL~~fl~kPi~   31 (250)
T PRK14474          3 IDWFTVVAQIINFLILVYLLRRFLYKPII   31 (250)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777788889999999965

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=92.73  E-value=1.4  Score=35.67  Aligned_cols=25  Identities=16%  Similarity=0.083  Sum_probs=19.0

Q ss_pred             hHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           95 FATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        95 ~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ..+|-.+.-++.++++++|+++|..
T Consensus        24 t~~~~~inFliL~~lL~k~l~~Pi~   48 (156)
T CHL00118         24 TLPLMALQFLLLMVLLNIILYKPLL   48 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677888888999999964

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=92.66  E-value=1.8  Score=34.64  Aligned_cols=30  Identities=17%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             CCChhhHHHHhHHHHHHHHHHhhhhcchhhh
Q 027638           90 HFSSFFATGAFIIPASVYFLLKKFILKPYYL  120 (221)
Q Consensus        90 ~~~~~~~~~a~v~P~~~y~~~~~~v~~P~~r  120 (221)
                      ++++ ..||.++.=++.|+++++++++|..+
T Consensus         2 ~~~~-~~~~~~i~Flil~~il~~~~~~pi~~   31 (156)
T PRK05759          2 NLNG-TLIGQLIAFLILVWFIMKFVWPPIMK   31 (156)
T ss_pred             CchH-HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3443 34555566666777788888999653

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=92.62  E-value=1.5  Score=38.28  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ++|...++-++-=+++++++++|+++|..
T Consensus         3 id~~t~~~qiInFlil~~lL~kfl~kPi~   31 (246)
T TIGR03321         3 IDWFTVIAQLINFLILVWLLKRFLYRPIL   31 (246)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            56666777777777888888898899965

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=91.63  E-value=2.5  Score=34.76  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             ChhhHHHHhHHHHHHHHHHhhhhcchhhhH---HH-------------HHHHHHHHHHhHHHHHHHHHHHHHH
Q 027638           92 SSFFATGAFIIPASVYFLLKKFILKPYYLK---RE-------------KQKALENMEKTSAQVQEAKAAAQKA  148 (221)
Q Consensus        92 ~~~~~~~a~v~P~~~y~~~~~~v~~P~~r~---~~-------------~~~~~~~r~~~~~~i~~~R~eA~~a  148 (221)
                      .+.-+||..+.=++.|++++++++.|..+-   |+             +.+.++.++++++++.++|+||.+.
T Consensus         9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I   81 (155)
T PRK06569          9 YYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL   81 (155)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777888999999988885522   11             1222333444566666666665553

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=91.53  E-value=2.4  Score=36.14  Aligned_cols=64  Identities=19%  Similarity=0.103  Sum_probs=32.9

Q ss_pred             HHHHhHHHHHHHHHHhhhhcchhhhH---HHH-------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027638           96 ATGAFIIPASVYFLLKKFILKPYYLK---REK-------------QKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRK  159 (221)
Q Consensus        96 ~~~a~v~P~~~y~~~~~~v~~P~~r~---~~~-------------~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~  159 (221)
                      .++-++.=++.++++.+|+.+|..+-   |++             ++..+..++.++.+.++|+||.+.++-.+..+++.
T Consensus        51 ~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~  130 (205)
T PRK06231         51 FIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQL  130 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444566677788888886532   111             11222234444555556666666555555555433

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=91.09  E-value=3.4  Score=34.02  Aligned_cols=29  Identities=21%  Similarity=-0.098  Sum_probs=14.8

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      +++...+|-++-=+++++++.+|+.+|..
T Consensus        17 ~~~~~~~~~iinflIl~~lL~~fl~kpI~   45 (174)
T PRK07352         17 LNLNLLETNLINLAIVIGLLYYFGRGFLG   45 (174)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33433333334444455566666677744

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=91.08  E-value=2.7  Score=33.96  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=12.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027638          131 MEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (221)
Q Consensus       131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (221)
                      .++.++++..+|.||.+.++-.+..++
T Consensus        56 ~~~~e~~L~~A~~ea~~ii~~A~~~a~   82 (159)
T PRK09173         56 LAEYQRKRKEAEKEAADIVAAAEREAE   82 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555554444433333

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=90.27  E-value=4.6  Score=31.76  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=16.8

Q ss_pred             HHHHhHHHHHHHHHHhhhhcchhh
Q 027638           96 ATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        96 ~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      .++-.+.-++.++++++|+++|..
T Consensus         8 ~~~~~i~flil~~ll~~~l~~pi~   31 (140)
T PRK07353          8 LPLMAVQFVLLTFILNALFYKPVG   31 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566777888898999965

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=90.02  E-value=3.9  Score=33.67  Aligned_cols=66  Identities=20%  Similarity=0.061  Sum_probs=35.2

Q ss_pred             hhHHHHhHHHHHHHHHHhhhhcchhhhH---HHH-------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027638           94 FFATGAFIIPASVYFLLKKFILKPYYLK---REK-------------QKALENMEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (221)
Q Consensus        94 ~~~~~a~v~P~~~y~~~~~~v~~P~~r~---~~~-------------~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (221)
                      ...||..+-=++.++++++|+++|...-   |++             .+..+..++.++.+.++|++|.+.++-.+..++
T Consensus        23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe  102 (167)
T PRK08475         23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY  102 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355656666677778888888996532   111             122222344445555555555555554444444


Q ss_pred             HH
Q 027638          158 RK  159 (221)
Q Consensus       158 r~  159 (221)
                      ..
T Consensus       103 ~~  104 (167)
T PRK08475        103 IL  104 (167)
T ss_pred             HH
Confidence            43

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=88.67  E-value=6.6  Score=32.64  Aligned_cols=29  Identities=17%  Similarity=-0.002  Sum_probs=17.7

Q ss_pred             CChhhHHHHhHHHHHHHHHHhhhhcchhh
Q 027638           91 FSSFFATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        91 ~~~~~~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      +++...++-++-=+++++++++|..+|..
T Consensus        22 ~n~~~~~~~~Inflill~lL~~fl~kPI~   50 (184)
T CHL00019         22 FNTDILETNLINLSVVLGVLIYFGKGVLS   50 (184)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence            44433333355555666777888888855

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.04  E-value=14  Score=35.73  Aligned_cols=109  Identities=18%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             ceeEEEEEcccceeEEEEEEEecCCCceeeEEEEEccccceeEEeeeeeeccc--eeEEEEEEEeeeeeEEEE-------
Q 027638            2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEF--STIRMLYSVGIQGIFWKF-------   72 (221)
Q Consensus         2 sw~~~~~~g~~~~~is~~y~r~~~~~~~~r~~~~~gt~g~~~~~g~~rkvs~~--s~vg~~v~ig~~Gv~lk~-------   72 (221)
                      +|+..+..| +.+.++..|.+.- +..++-.++.+|+-++.....-.++..+.  +.+-++..+|.-|+....       
T Consensus       255 ~g~i~l~~g-~~Sa~ttt~~~~~-~~~s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvS  332 (546)
T KOG0718|consen  255 SGSIALNRG-IQSAMTTTWVHMK-ENPSLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVS  332 (546)
T ss_pred             cceEEechh-hhhhheeeeeecc-ccccceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceee
Confidence            688899999 5777888887643 23666777888887777667778888876  666666667665655422       


Q ss_pred             EEEEcceEE--EEE--EEecc-------CCChhhHHHHhHHHHHHHHHHhh
Q 027638           73 ELHRAGQKL--VVP--ILLSR-------HFSSFFATGAFIIPASVYFLLKK  112 (221)
Q Consensus        73 ~~~R~gQ~~--~~P--I~Ls~-------~~~~~~~~~a~v~P~~~y~~~~~  112 (221)
                      ++++.+-.|  .+|  |++.=       .+.+.+.++.-++|.+++.++-.
T Consensus       333 ryStv~~~~svgvpsgi~~k~~~~R~~Q~~~~pI~l~d~~~p~avfya~v~  383 (546)
T KOG0718|consen  333 RYSTVGANVSVGVPSGITLKVKLLRAGQKYSFPIHLCDELLPSAVFYALVF  383 (546)
T ss_pred             eceeEEEEEEEcCCcceEEEEeeeccCcEEEEEEEeechhhhhhhhhhhhH
Confidence            233444433  345  33321       25666788999999998877544

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=87.02  E-value=8.2  Score=32.02  Aligned_cols=21  Identities=10%  Similarity=-0.172  Sum_probs=12.3

Q ss_pred             HHHhHHHHHHHHHHhhhhcch
Q 027638           97 TGAFIIPASVYFLLKKFILKP  117 (221)
Q Consensus        97 ~~a~v~P~~~y~~~~~~v~~P  117 (221)
                      ||-++.-+++++++.+|.+.|
T Consensus        30 ~~~~inflil~~iL~~f~~~~   50 (184)
T PRK13455         30 FVVTLAFLLFIGILVYFKVPG   50 (184)
T ss_pred             HHHHHHHHHHHHHHHHHhccH
Confidence            344555566666666665565

>PRK06531 yajC preprotein translocase subunit YajC; Validated

Probab=86.59  E-value=1.1  Score=34.98  Aligned_cols=23  Identities=22%  Similarity=0.086  Sum_probs=16.2

Q ss_pred             HhHHHHHHHHHHhhhhcchhhhH
Q 027638           99 AFIIPASVYFLLKKFILKPYYLK  121 (221)
Q Consensus        99 a~v~P~~~y~~~~~~v~~P~~r~  121 (221)
                      ..++|+++++++-+|++||.++|
T Consensus         4 ~~il~~vv~~~i~yf~iRPQkKr   26 (113)
T PRK06531          4 PTIIMFVVMLGLIFFMQRQQKKQ   26 (113)
T ss_pred             HHHHHHHHHHHHHHheechHHHH
Confidence            35667777777777788885544

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=84.86  E-value=8.8  Score=30.37  Aligned_cols=16  Identities=13%  Similarity=0.335  Sum_probs=10.6

Q ss_pred             HHHHHHHhhhhcchhh
Q 027638          104 ASVYFLLKKFILKPYY  119 (221)
Q Consensus       104 ~~~y~~~~~~v~~P~~  119 (221)
                      +++++++++|+++|..
T Consensus         6 lil~~il~~~~~~pi~   21 (147)
T TIGR01144         6 ILLVWFCMKYVWPPLA   21 (147)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455667777788855

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=84.18  E-value=13  Score=30.30  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=13.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027638          131 MEKTSAQVQEAKAAAQKAQQLLQNVAN  157 (221)
Q Consensus       131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~  157 (221)
                      ..+.++++..+|.||.+.++-.+..++
T Consensus        64 ~~~~e~~L~~A~~ea~~Ii~~A~~~a~   90 (167)
T PRK14475         64 LADVKAEREEAERQAAAMLAAAKADAR   90 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555554444444433

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=84.17  E-value=9.3  Score=36.38  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=15.5

Q ss_pred             HHHHhHHHHHHHHHHhhhhcchhh
Q 027638           96 ATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        96 ~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      .+|-.+.=+++++++++|+++|..
T Consensus         4 ~i~qlInFlIl~~lL~kfl~~Pi~   27 (445)
T PRK13428          4 FIGQLIGFAVIVFLVWRFVVPPVR   27 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455666778888888854

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=83.79  E-value=9.7  Score=29.18  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=15.8

Q ss_pred             HHHhHHHHHHHHHHhhhhcchhh
Q 027638           97 TGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        97 ~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      ||-++.=++.|+++.+|+++|..
T Consensus         3 ~~~~i~Flil~~~l~~~~~~pi~   25 (132)
T PF00430_consen    3 FWQLINFLILFFLLNKFLYKPIK   25 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556667778888888865

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]

Probab=83.53  E-value=1.9  Score=32.83  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             HHHHhHHHHHHHHHHhhh-hcchhhhH
Q 027638           96 ATGAFIIPASVYFLLKKF-ILKPYYLK  121 (221)
Q Consensus        96 ~~~a~v~P~~~y~~~~~~-v~~P~~r~  121 (221)
                      ..+.+++|++.++++-+| ++||-++|
T Consensus         7 ~~~~~ll~~vl~~~ifyFli~RPQrKr   33 (97)
T COG1862           7 SGLVLLLPLVLIFAIFYFLIIRPQRKR   33 (97)
T ss_pred             ccHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            456778888888777776 77885544

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=83.06  E-value=15  Score=30.04  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=14.7

Q ss_pred             HHHHhHHHHHHHHHHhhhhcchhh
Q 027638           96 ATGAFIIPASVYFLLKKFILKPYY  119 (221)
Q Consensus        96 ~~~a~v~P~~~y~~~~~~v~~P~~  119 (221)
                      .||-++.=++.|+++.+|++.|..
T Consensus         9 ~~~~~i~F~ill~ll~~~~~~pi~   32 (161)
T COG0711           9 ILWQLIAFVILLWLLKKFVWKPIL   32 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH
Confidence            444444445556667777778865

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
2rdd_B	37	UPF0092 membrane protein YAJC; drug resistance, mu	86.65

>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}

Probab=86.65  E-value=0.43  Score=28.85  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=15.4

Q ss_pred             HhHHHHHHH-HHHhhhhcchhhhHH
Q 027638           99 AFIIPASVY-FLLKKFILKPYYLKR  122 (221)
Q Consensus        99 a~v~P~~~y-~~~~~~v~~P~~r~~  122 (221)
                      ..++|+++. +++.++++||-++++
T Consensus         4 ~~~l~~v~~~~ifYFl~iRPQ~Kr~   28 (37)
T 2rdd_B            4 SLILMLVVFGLIFYFMILRPQQKRT   28 (37)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            456677765 445677889966553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00