Citrus Sinensis ID: 027698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKKK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccEEEEEEEEEcccccccHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccc
Coil and Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAvgilpsgvwlpfmqwcgRTLFFLVTACEivqvqdhpsLFITFLAWCLIEVIrypfyalntigacphwltylrytmfiplypigVLGEMLllnqafpymkeknifanffaglpfsyyNVVQVVFVMYPFAWIKLYSHMLKQRGsklgkrqekkkk
Flexible Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQrgsklgkrqekkkk
Low Complexity Region (SEG)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKKK
Disordered region (IsUnstruct)
*******IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHML****************
Disordered Region (DISOPRED)
******P***YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHML****************
Disordered Region (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLK***************
Disordered Region (DISPRO)
****RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q2KIP8	254	Very-long-chain (3R)-3-hy	yes	no	0.936	0.811	0.325	3e-27
Q5RBK3	255	Very-long-chain (3R)-3-hy	yes	no	0.936	0.807	0.325	4e-27
Q6Y1H2	254	Very-long-chain (3R)-3-hy	yes	no	0.936	0.811	0.325	4e-27
Q9D3B1	254	Very-long-chain (3R)-3-hy	yes	no	0.936	0.811	0.320	1e-26
Q9QY80	281	Very-long-chain (3R)-3-hy	no	no	0.877	0.686	0.311	5e-24
Q4W1W1	249	Very-long-chain (3R)-3-hy	no	no	0.872	0.771	0.309	3e-23
Q9N1R5	288	Very-long-chain (3R)-3-hy	N/A	no	0.872	0.666	0.309	4e-23
Q8K2C9	362	Very-long-chain (3R)-3-hy	no	no	0.936	0.569	0.317	1e-22
Q7SY06	359	Very-long-chain (3R)-3-hy	no	no	0.9	0.551	0.325	1e-22
B0YJ81	288	Very-long-chain (3R)-3-hy	no	no	0.877	0.670	0.295	1e-21

>sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 9/215 (4%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
           PS V L  +Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct: 101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query: 131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FSYYNV 184
           P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++     LP      F YY  
Sbjct: 161 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYS---ISLPNKYNFSFDYYAF 217

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
           + ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct: 218 LILIMISYIPLFPQLYFHMIHQRRKILSHTEEHKK 252

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.
Bos taurus (taxid: 9913)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Pongo abelii GN=PTPLB PE=2 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 9/215 (4%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 42  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 101

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
           PS V L   Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct: 102 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 161

Query: 131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FSYYNV 184
           P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++     LP      F YY  
Sbjct: 162 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYS---ISLPNKYNFSFDYYAF 218

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
           + ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct: 219 LILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKK 253

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Homo sapiens GN=PTPLB PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 9/215 (4%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
           PS V L   Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query: 131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FSYYNV 184
           P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++     LP      F YY  
Sbjct: 161 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYS---ISLPNKYNFSFDYYAF 217

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
           + ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct: 218 LILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKK 252

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Mus musculus GN=Ptplb PE=2 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 9/215 (4%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
           PS V L   Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query: 131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FSYYNV 184
           P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++     LP      F Y+  
Sbjct: 161 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYS---ISLPNKYNFSFDYHAF 217

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
           + ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct: 218 LILIMISYIPLFPQLYFHMIHQRRKVLSHTEEHKK 252

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9QY80|HACD1_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Mus musculus GN=Ptpla PE=2 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LEVVH  +GI+P+ V
Sbjct: 72  YNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIVPTSV 131

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 134
            +  +Q   R     +    I  +Q+  S+ +  ++W + E+ RY FY  + +   PH++
Sbjct: 132 LVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEITRYSFYTFSLLDHLPHFI 191

Query: 135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVM 191
            + RY +FI LYP+GV GE+L +  A PY+K+  +F+        + F YY  + +    
Sbjct: 192 KWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKYNVSFDYYYFLLITMAS 251

Query: 192 YPFAWIKLYSHMLKQR 207
           Y   + +LY HML+QR
Sbjct: 252 YIPLFPQLYFHMLRQR 267

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q4W1W1|HACD1_CANFA Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Canis familiaris GN=PTPLA PE=2 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 5/197 (2%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI+P+ V
Sbjct: 40  YNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 99

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 134
            +  +Q   R     +    I  +Q+  S+ +  +AW + E+ RY FY  + +   P+++
Sbjct: 100 IVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFI 159

Query: 135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQVVFV 190
            + RY  FI LYP+GV+GE+L +  A PY+K+  +F+    N +  + F YY  + +   
Sbjct: 160 KWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRLPNKY-NVSFDYYYFLLITMA 218

Query: 191 MYPFAWIKLYSHMLKQR 207
            Y   + +LY HML+QR
Sbjct: 219 SYIPLFPQLYFHMLRQR 235

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9N1R5|HACD1_SHEEP Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Ovis aries GN=PTPLA PE=2 SV=1

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI+P+ V
Sbjct: 79  YNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 138

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 134
            +  +Q   R     +    I  +Q+  S+ +  +AW + E+ RY FY  + +   P+++
Sbjct: 139 LVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFI 198

Query: 135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQVVFV 190
            + RY  FI LYP+GV GE+L +  A PY+K+  +F+    N +  + F YY  + +   
Sbjct: 199 KWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRLPNKY-NVSFDYYYFLLITMA 257

Query: 191 MYPFAWIKLYSHMLKQR 207
            Y   + +LY HML+QR
Sbjct: 258 SYIPLFPQLYFHMLRQR 274

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Ovis aries (taxid: 9940)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8K2C9|HACD3_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3 OS=Mus musculus GN=ptplad1 PE=1 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 11/217 (5%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct: 147 KGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAA 206

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNT 126
           +G+  + V    +Q+ GR     +    + ++Q+   +F  F +W  IE+ RYPFY L+ 
Sbjct: 207 IGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEIFRYPFYMLSC 266

Query: 127 IGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FS 180
           I      LT+LRYTM+IPLYP+G L E + + Q+ P   E   F+ F    P      FS
Sbjct: 267 IDMDWKVLTWLRYTMWIPLYPLGCLSEAVAVIQSIPVFNESGRFS-FTLPYPVKMKVRFS 325

Query: 181 YYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEK 217
           ++  +QV  VM        + H+ KQR  + G++++K
Sbjct: 326 FF--LQVYLVMLFLGLYINFRHLYKQRRRRYGQKKKK 360

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q7SY06|HADC_DANRE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase OS=Danio rerio GN=ptplad1 PE=2 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 5/203 (2%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct: 144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query: 67  VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNT 126
           VG++ +GV   F+Q  GR     V    +  +Q+ P +F  F  W  IE+ RYPFY L  
Sbjct: 204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIEIFRYPFYMLAC 263

Query: 127 IGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFF---AGLPFSYYN 183
           I      LT+LRYT+++PLYP+GVL E + + Q+ P   E  + +       GL  S+  
Sbjct: 264 IDTEWKLLTWLRYTIWMPLYPLGVLAEAVAVIQSIPIFDETKLLSIPLPKATGLSLSFSY 323

Query: 184 VVQVVFVMYPFAWIKLYSHMLKQ 206
           ++Q+  V+        + H+ KQ
Sbjct: 324 ILQLYLVVMFLGLFINFRHLFKQ 346

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B0YJ81|HACD1_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Homo sapiens GN=PTPLA PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 3/196 (1%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           Y+    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI+P+ V
Sbjct: 79  YDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 138

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 134
            +  +Q   R     +    I  +Q+  S+ +  +AW + E+ RY FY  + +   P+++
Sbjct: 139 IVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFI 198

Query: 135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVM 191
            + RY  FI LYP+GV GE+L +  A P++K+  +F+        + F YY  + +    
Sbjct: 199 KWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMAS 258

Query: 192 YPFAWIKLYSHMLKQR 207
           Y   + +LY HML+QR
Sbjct: 259 YIPLFPQLYFHMLRQR 274

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
224054853	219	predicted protein [Populus trichocarpa]	0.963	0.968	0.596	5e-70
357472425	290	Protein-tyrosine phosphatase-like member	0.954	0.724	0.578	5e-65
388506134	219	unknown [Medicago truncatula]	0.954	0.958	0.578	1e-64
351725325	218	uncharacterized protein LOC100527607 [Gl	0.954	0.963	0.573	2e-63
388495836	219	unknown [Lotus japonicus]	0.954	0.958	0.549	9e-62
255580590	217	ptpla domain protein, putative [Ricinus	0.9	0.912	0.59	8e-61
297796925	221	hypothetical protein ARALYDRAFT_358193 [	0.968	0.963	0.509	3e-59
225435072	208	PREDICTED: 3-hydroxyacyl-CoA dehydratase	0.931	0.985	0.550	4e-59
26453242	221	unknown protein [Arabidopsis thaliana] g	0.909	0.904	0.535	1e-58
326510675	218	predicted protein [Hordeum vulgare subsp	0.972	0.981	0.530	1e-58

>gi|224054853|ref|XP_002298376.1| predicted protein [Populus trichocarpa] gi|222845634|gb|EEE83181.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 166/213 (77%), Gaps = 1/213 (0%)

Query: 9   KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
           KLYLF YNSLQA GW V++F +L N  ST S+ G +ASAG++I +LQT +FLEV+HGA+G
Sbjct: 6   KLYLFAYNSLQAFGWAVSLFAILINFFSTHSLNGAYASAGDLICLLQTVSFLEVIHGALG 65

Query: 69  ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIG 128
           ++PSGV  PFMQW GRT F L    +I++VQ+ PS+FITF+AW + EVIRY  YALN +G
Sbjct: 66  VVPSGVLFPFMQWGGRTHFVLAIVRQIIEVQELPSVFITFVAWSMAEVIRYSHYALNCVG 125

Query: 129 ACPHWLTYLRYTMFIPLYPIGVL-GEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQV 187
           +CP W+TYLRYT FI LYPIG+  GEM  + QA P++K+KN++A+FFA  PFSYY+ ++V
Sbjct: 126 SCPSWITYLRYTAFIVLYPIGLAPGEMWTMYQALPFVKKKNLYADFFAAFPFSYYDFLRV 185

Query: 188 VFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKKK 220
           V + YPF W+ LY ++LKQR SKLG+ QE KKK
Sbjct: 186 VLLCYPFLWLNLYRYLLKQRRSKLGRHQETKKK 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472425|ref|XP_003606497.1| Protein-tyrosine phosphatase-like member B [Medicago truncatula] gi|355507552|gb|AES88694.1| Protein-tyrosine phosphatase-like member B [Medicago truncatula]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 157/211 (74%), Gaps = 1/211 (0%)

Query: 10  LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
           LYL  YNS QA GW V++  +L NLLST SI GT+ASAG +I  LQ AAFLEV+HGA+G+
Sbjct: 8   LYLLAYNSFQAIGWFVSLINILYNLLSTSSITGTYASAGTLISFLQCAAFLEVIHGAIGL 67

Query: 70  LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGA 129
           +PSG  LP MQW GRT F L     I +VQ+ P +FITFLAW + E+IRY  YA + +G 
Sbjct: 68  VPSGALLPLMQWGGRTHFVLAIVNGIHEVQELPPVFITFLAWSIGEIIRYSHYAFSCLGN 127

Query: 130 CPHWLTYLRYTMFIPLYPIGVL-GEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVV 188
           CP W+TY+RYT FI +YP+GV  GE+ L+ Q+ P +KEKNI+A+ F+ LPFSYY+ ++VV
Sbjct: 128 CPSWITYIRYTAFIVIYPVGVFPGELWLMYQSLPIIKEKNIYADSFSSLPFSYYDFLKVV 187

Query: 189 FVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
            V+YPF W KLY H+ KQR SKL KR++KK+
Sbjct: 188 IVVYPFLWFKLYLHLFKQRRSKLYKRRDKKR 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506134|gb|AFK41133.1| unknown [Medicago truncatula]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 157/211 (74%), Gaps = 1/211 (0%)

Query: 10  LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
           LYL  YNS QA GW V++  +L NLLST SI GT+ASAG +I  LQ AAFLEV+HGA+G+
Sbjct: 8   LYLLAYNSFQAIGWFVSLINILYNLLSTSSITGTYASAGTLISFLQCAAFLEVIHGAIGL 67

Query: 70  LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGA 129
           +PSG  LP MQW GRT F L     I +VQ+ P +FITFLAW + E+IRY  YA + +G 
Sbjct: 68  VPSGALLPLMQWGGRTHFVLAIVNGIHEVQELPPVFITFLAWSIGEIIRYSHYAFSCLGN 127

Query: 130 CPHWLTYLRYTMFIPLYPIGVL-GEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVV 188
           CP W+TY+RYT FI +YP+GV  GE+ L+ Q+ P +KEKNI+A+ F+ LPFSYY+ ++VV
Sbjct: 128 CPSWITYIRYTAFIVIYPVGVFPGELWLMYQSLPIIKEKNIYADSFSSLPFSYYDFLKVV 187

Query: 189 FVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
            V+YPF W KLY H+ KQR SKL KR++KK+
Sbjct: 188 IVVYPFLWFKLYLHLFKQRRSKLYKRRDKKR 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725325|ref|NP_001238624.1| uncharacterized protein LOC100527607 [Glycine max] gi|255632745|gb|ACU16724.1| unknown [Glycine max]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/211 (57%), Positives = 154/211 (72%), Gaps = 1/211 (0%)

Query: 10  LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
           LYL  YNS QA GW +++  +L NLL T SI GT+ASA  +I  LQ AAFLEV+HGA+GI
Sbjct: 7   LYLLAYNSFQAIGWTISLTKILYNLLVTASIKGTYASAASLICFLQCAAFLEVIHGAIGI 66

Query: 70  LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGA 129
           +PSGV LP MQW GRT F L    ++ ++Q+ PS+FITFLAW + EVIRY  YA   +G 
Sbjct: 67  VPSGVLLPLMQWGGRTHFVLAIVRKLDELQELPSVFITFLAWSMGEVIRYSHYAFGCLGN 126

Query: 130 CPHWLTYLRYTMFIPLYPIGV-LGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVV 188
           CP W+TYLRYT FI LYP+GV  GE+  + QA P +KEKN++A+ F+ LPFSYY+ ++VV
Sbjct: 127 CPSWMTYLRYTAFIVLYPLGVGPGEIWAMYQALPVIKEKNLYADSFSSLPFSYYDFLKVV 186

Query: 189 FVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
            + YPF W KLY HM KQR +KL KR +KK+
Sbjct: 187 LIAYPFLWFKLYLHMFKQRRTKLYKRHDKKR 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495836|gb|AFK35984.1| unknown [Lotus japonicus]

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 158/211 (74%), Gaps = 1/211 (0%)

Query: 10  LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
           LYL  YNSLQA GW V++  ++ NL+ST SI GT+ASAG++I  LQ AAFLEV+HGA+G+
Sbjct: 9   LYLLSYNSLQAIGWTVSLTKIVFNLVSTASINGTYASAGQLIIFLQCAAFLEVIHGAIGL 68

Query: 70  LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGA 129
           +PSGV LP MQW GRT F L    ++ +VQ+  S+FITFLAW + EVIRY  YA + +G 
Sbjct: 69  VPSGVLLPLMQWGGRTHFVLALVAKLDEVQELTSIFITFLAWSISEVIRYSHYAFSCLGN 128

Query: 130 CPHWLTYLRYTMFIPLYPIGV-LGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVV 188
           CP W+TYLRY  F  LYP+GV  GE+  + QA P +K+KN++A+ F+ LPFSYY+ ++VV
Sbjct: 129 CPSWITYLRYAAFTVLYPLGVGPGEIWAMYQALPIIKKKNLYADSFSSLPFSYYDFLRVV 188

Query: 189 FVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
            ++YPF W+KLY H+ KQR +KL ++ +KK+
Sbjct: 189 LIVYPFLWLKLYLHLFKQRRAKLYRQHDKKR 219

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580590|ref|XP_002531119.1| ptpla domain protein, putative [Ricinus communis] gi|223529315|gb|EEF31284.1| ptpla domain protein, putative [Ricinus communis]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 2/200 (1%)

Query: 9   KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
           KLYLF YNSLQA GW VA+F +LS L+ST S+   +ASAGE+I +LQ  AFLEV+HGA+G
Sbjct: 7   KLYLFSYNSLQAFGWSVALFKILSTLISTNSVNTAYASAGELICLLQILAFLEVIHGALG 66

Query: 69  ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIG 128
           ++PSGV  PFMQW GRT F  +    +++VQ+ PS+FITF  W L EVIRYP YALN +G
Sbjct: 67  LVPSGVLFPFMQWGGRTHFVFIVR-NLIEVQELPSVFITFFVWSLSEVIRYPHYALNILG 125

Query: 129 ACPHWLTYLRYTMFIPLYPIGVL-GEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQV 187
            CP W+ YLRYT FI LYPIG+  GEM L+ QA P++K+ ++FANFFA LP +Y++ ++V
Sbjct: 126 NCPSWINYLRYTAFIVLYPIGIAPGEMWLIYQALPFVKKTSLFANFFAALPLNYHDFLRV 185

Query: 188 VFVMYPFAWIKLYSHMLKQR 207
             V YPF W  LY H+LKQR
Sbjct: 186 GLVCYPFLWFNLYLHLLKQR 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796925|ref|XP_002866347.1| hypothetical protein ARALYDRAFT_358193 [Arabidopsis lyrata subsp. lyrata] gi|297312182|gb|EFH42606.1| hypothetical protein ARALYDRAFT_358193 [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 155/216 (71%), Gaps = 3/216 (1%)

Query: 8   IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
           +K YLF YN LQA+ W +++  +L++ LS K+I   +ASAG +I + QT A LEV+HGA+
Sbjct: 5   LKFYLFTYNFLQASAWTISLLNILNSFLSNKTINVAYASAGYLISVFQTVAVLEVLHGAI 64

Query: 68  GILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTI 127
           GI+PSG   P MQW GRT F L    +I +VQD P L +T +AWC+ E+IRYP YA   +
Sbjct: 65  GIVPSGFLSPLMQWSGRTHFILAIVGQIKEVQDSPWLSLTLVAWCIGEMIRYPHYAFTCL 124

Query: 128 GACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQV 187
           G+CP+WLTYLRYT FI +YP G++GE+L++ +A PY+KE N++  FF+  PFSYY+ +  
Sbjct: 125 GSCPYWLTYLRYTGFIIIYPTGLVGELLIMYKALPYVKETNLYVKFFSVFPFSYYDFLWD 184

Query: 188 VFVMYPFAWIKLYSHMLKQRGSKLGKRQE---KKKK 220
           V ++YPF W+KLY  + KQR SKLGK ++   K+K+
Sbjct: 185 VLLVYPFLWLKLYLQLFKQRKSKLGKSEKLHGKRKR 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435072|ref|XP_002284406.1| PREDICTED: 3-hydroxyacyl-CoA dehydratase 2 [Vitis vinifera] gi|297746135|emb|CBI16191.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 152/216 (70%), Gaps = 11/216 (5%)

Query: 6   QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHG 65
           Q   LYL  YNSLQA GW V++  +LS+ L T+S  G +ASAG+++ +LQT +FLEVVHG
Sbjct: 3   QLANLYLLAYNSLQALGWAVSLSRILSSFLDTRSFNGAYASAGDLVCLLQTVSFLEVVHG 62

Query: 66  AVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN 125
           A+G++PSGV LP MQW GRT F L     IV+VQ+ PS+FITF+AW + EVIRY  YAL+
Sbjct: 63  AIGLVPSGVLLPLMQWGGRTHFLLAIVRRIVEVQELPSVFITFIAWSISEVIRYSHYALH 122

Query: 126 TIGACPHWLTYLRYTMFIPLYPIGVL-GEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNV 184
            +G+CP  +TYLRYT FI LYP+GV  GEM L+ QA P++K KNI          S+Y  
Sbjct: 123 CMGSCPSCITYLRYTAFILLYPVGVAPGEMWLMYQALPFIKRKNI----------SHYYF 172

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKKK 220
           V VV + YPF W+KLY H+ KQR SKLGK   KK++
Sbjct: 173 VWVVLLCYPFLWLKLYLHLFKQRRSKLGKHDGKKRR 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453242|dbj|BAC43694.1| unknown protein [Arabidopsis thaliana] gi|28950767|gb|AAO63307.1| At5g59770 [Arabidopsis thaliana]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 148/200 (74%)

Query: 8   IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
           +K YLF YN LQA+ W +++ ++L++ LS K+I   +ASAG +I + QTAA LEV+HGA+
Sbjct: 5   VKFYLFSYNFLQASAWAISLLIILNSFLSNKTIISAYASAGFLISLFQTAAILEVLHGAI 64

Query: 68  GILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTI 127
           GI+PSG   P MQW GRT F L    +I +VQD P L IT +AWC+ E+IRYP YA   +
Sbjct: 65  GIVPSGFLSPLMQWSGRTHFILAIVGQIKEVQDSPWLSITLVAWCIGEMIRYPHYAFTCL 124

Query: 128 GACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQV 187
           G CP+WLTYLRYT FI +YP G++GE+L++ +A PY+KE+N++ANFF+  PFSYY+ +  
Sbjct: 125 GRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKERNLYANFFSVFPFSYYDFLWA 184

Query: 188 VFVMYPFAWIKLYSHMLKQR 207
           V ++YPF W+KLY  + KQR
Sbjct: 185 VLLVYPFLWLKLYLQLFKQR 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510675|dbj|BAJ87554.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 150/215 (69%), Gaps = 1/215 (0%)

Query: 6   QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHG 65
           +P +LYL  YNSLQA GW VA   LL+ L    S+   +A+AG++I +LQT A LE +H 
Sbjct: 3   RPSRLYLLAYNSLQAIGWSVAFLRLLACLAPPVSVDSAYAAAGDLICLLQTCAVLETIHA 62

Query: 66  AVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN 125
           AVG++P+  +L F+QW GRT F L    +I +VQD PS+FITF+AW + EVIRY  YAL+
Sbjct: 63  AVGLVPTSPFLAFLQWGGRTHFVLALLRQIPEVQDSPSVFITFMAWSISEVIRYSHYALS 122

Query: 126 TIGACPHWLTYLRYTMFIPLYPIGV-LGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNV 184
           TI  CP WLTYLRYT FIPLYPIGV  GEM  + QA P++KE+++++ FFA    SY++ 
Sbjct: 123 TIKVCPAWLTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERDLYSGFFAKFSMSYHSF 182

Query: 185 VQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
           +  V + YP  W+KLY H+ KQR SKLGK   KK+
Sbjct: 183 LVGVLLCYPLLWLKLYLHVFKQRKSKLGKADRKKR 217

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2174319	272	AT5G59770 "AT5G59770" [Arabido	0.890	0.720	0.522	3.3e-56
UNIPROTKB|Q2KIP8	254	PTPLB "Very-long-chain (3R)-3-	0.945	0.818	0.323	7.1e-29
UNIPROTKB|Q6Y1H2	254	PTPLB "Very-long-chain (3R)-3-	0.945	0.818	0.323	9.1e-29
MGI|MGI:1918007	254	Ptplb "protein tyrosine phosph	0.945	0.818	0.319	3.1e-28
MGI|MGI:1353592	281	Ptpla "protein tyrosine phosph	0.890	0.697	0.313	2.5e-26
UNIPROTKB|Q4W1W1	249	PTPLA "Very-long-chain (3R)-3-	0.895	0.791	0.306	8.4e-26
MGI|MGI:1889341	362	Ptplad1 "protein tyrosine phos	0.936	0.569	0.317	9.7e-25
UNIPROTKB|B0YJ81	288	PTPLA "Very-long-chain (3R)-3-	0.890	0.680	0.298	2e-24
ZFIN|ZDB-GENE-040426-1200	404	ptplad1 "protein tyrosine phos	0.831	0.452	0.335	8.7e-24
RGD|1565496	362	Ptplad1 "protein tyrosine phos	0.927	0.563	0.306	2.9e-23

TAIR|locus:2174319 AT5G59770 "AT5G59770" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 104/199 (52%), Positives = 147/199 (73%)

Query:    25 VAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84
             +++ ++L++ LS K+I   +ASAG +I + QTAA LEV+HGA+GI+PSG   P MQW GR
Sbjct:    73 ISLLIILNSFLSNKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGR 132

Query:    85 TLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIP 144
             T F L    +I +VQD P L IT +AWC+ E+IRYP YA   +G CP+WLTYLRYT FI 
Sbjct:   133 THFILAIVGQIKEVQDSPWLSITLVAWCIGEMIRYPHYAFTCLGRCPYWLTYLRYTGFIV 192

Query:   145 LYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVVQVVFVMYPFAWIKLYSHML 204
             +YP G++GE+L++ +A PY+KE+N++ANFF+  PFSYY+ +  V ++YPF W+KLY  + 
Sbjct:   193 IYPTGLVGELLIMYKALPYVKERNLYANFFSVFPFSYYDFLWAVLLVYPFLWLKLYLQLF 252

Query:   205 KQRGSKLGKRQE---KKKK 220
             KQR SKLGK ++   K+K+
Sbjct:   253 KQRKSKLGKSKKLHGKRKR 271

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2KIP8 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 69/213 (32%), Positives = 113/213 (53%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
             PS V L  +Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct:   101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query:   131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQ 186
             P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++    N +    F YY  + 
Sbjct:   161 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKY-NFSFDYYAFLI 219

Query:   187 VVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
             ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct:   220 LIMISYIPLFPQLYFHMIHQRRKILSHTEEHKK 252

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q6Y1H2 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 69/213 (32%), Positives = 112/213 (52%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
             PS V L   Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query:   131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQ 186
             P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++    N +    F YY  + 
Sbjct:   161 PYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKY-NFSFDYYAFLI 219

Query:   187 VVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
             ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct:   220 LIMISYIPIFPQLYFHMIHQRRKILSHTEEHKK 252

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1918007 Ptplb "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 68/213 (31%), Positives = 111/213 (52%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
             PS V L   Q   R          + +VQ   S+ +  +AW + E+IRY FY  + +   
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHL 160

Query:   131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQ 186
             P+ + + RYT+FI LYP+GV GE+L +  A P++++  +++    N +    F Y+  + 
Sbjct:   161 PYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISLPNKY-NFSFDYHAFLI 219

Query:   187 VVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219
             ++ + Y   + +LY HM+ QR   L   +E KK
Sbjct:   220 LIMISYIPLFPQLYFHMIHQRRKVLSHTEEHKK 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:1353592 Ptpla "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 63/201 (31%), Positives = 106/201 (52%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             +L  YN    AGW+V    ++   +   +  G + S  + +   QT A LEVVH  +GI+
Sbjct:    68 WLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIV 127

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
             P+ V +  +Q   R     +    I  +Q+  S+ +  ++W + E+ RY FY  + +   
Sbjct:   128 PTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEITRYSFYTFSLLDHL 187

Query:   131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQ 186
             PH++ + RY +FI LYP+GV GE+L +  A PY+K+  +F+    N +  + F YY  + 
Sbjct:   188 PHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKY-NVSFDYYYFLL 246

Query:   187 VVFVMYPFAWIKLYSHMLKQR 207
             +    Y   + +LY HML+QR
Sbjct:   247 ITMASYIPLFPQLYFHMLRQR 267

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q4W1W1 PTPLA "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 62/202 (30%), Positives = 107/202 (52%)

Query:    10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
             ++L  YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI
Sbjct:    35 VWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGI 94

Query:    70 LPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGA 129
             +P+ V +  +Q   R     +    I  +Q+  S+ +  +AW + E+ RY FY  + +  
Sbjct:    95 VPTSVIVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDH 154

Query:   130 CPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVV 185
              P+++ + RY  FI LYP+GV+GE+L +  A PY+K+  +F+    N +  + F YY  +
Sbjct:   155 LPYFIKWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRLPNKY-NVSFDYYYFL 213

Query:   186 QVVFVMYPFAWIKLYSHMLKQR 207
              +    Y   + +LY HML+QR
Sbjct:   214 LITMASYIPLFPQLYFHMLRQR 235

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

MGI|MGI:1889341 Ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 69/217 (31%), Positives = 112/217 (51%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:   147 KGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAA 206

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNT 126
             +G+  + V    +Q+ GR     +    + ++Q+   +F  F +W  IE+ RYPFY L+ 
Sbjct:   207 IGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEIFRYPFYMLSC 266

Query:   127 IGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FS 180
             I      LT+LRYTM+IPLYP+G L E + + Q+ P   E   F+ F    P      FS
Sbjct:   267 IDMDWKVLTWLRYTMWIPLYPLGCLSEAVAVIQSIPVFNESGRFS-FTLPYPVKMKVRFS 325

Query:   181 YYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEK 217
             ++  +QV  VM        + H+ KQR  + G++++K
Sbjct:   326 FF--LQVYLVMLFLGLYINFRHLYKQRRRRYGQKKKK 360

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0007254 "JNK cascade" evidence=IDA

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|B0YJ81 PTPLA "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/201 (29%), Positives = 105/201 (52%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             +L  Y+    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI+
Sbjct:    75 WLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIV 134

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
             P+ V +  +Q   R     +    I  +Q+  S+ +  +AW + E+ RY FY  + +   
Sbjct:   135 PTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHL 194

Query:   131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA----NFFAGLPFSYYNVVQ 186
             P+++ + RY  FI LYP+GV GE+L +  A P++K+  +F+    N +  + F YY  + 
Sbjct:   195 PYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKY-NVSFDYYYFLL 253

Query:   187 VVFVMYPFAWIKLYSHMLKQR 207
             +    Y   + +LY HML+QR
Sbjct:   254 ITMASYIPLFPQLYFHMLRQR 274

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=TAS

ZFIN|ZDB-GENE-040426-1200 ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/188 (33%), Positives = 99/188 (52%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct:   144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query:    67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNT 126
             VG++ +GV   F+Q  GR     V    +  +Q+ P +F  F  W  IE+ RYPFY L  
Sbjct:   204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIEIFRYPFYMLAC 263

Query:   127 IGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFF---AGLPFSYYN 183
             I      LT+LRYT+++PLYP+GVL E + + Q+ P   E  + +       GL  S+  
Sbjct:   264 IDTEWKLLTWLRYTIWMPLYPLGVLAEAVAVIQSIPIFDETKLLSIPLPKATGLSLSFSY 323

Query:   184 VVQVVFVM 191
             ++Q+  V+
Sbjct:   324 ILQLYLVV 331

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

RGD|1565496 Ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 66/215 (30%), Positives = 109/215 (50%)

Query:    11 YLFGYNSLQAAGW--IVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
             Y + +N +Q  GW  +   F     L   +S   TF +  ++++  Q  A +E ++ A+G
Sbjct:   149 YRYFFNEVQDRGWSCLEYNFTQYFYLYGKESFYDTFHTVADMMYFCQMLALVETLNAAIG 208

Query:    69 ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIG 128
             +  S V    +Q+ GR     +    + ++Q+   +F  F +W  IE+ RYPFY L+ I 
Sbjct:   209 VTNSPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEIFRYPFYMLSCID 268

Query:   129 ACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLP------FSYY 182
                  LT+LRYTM+IPLYP+G L E + + Q+ P   E   F+ F    P      FS++
Sbjct:   269 MDWKVLTWLRYTMWIPLYPLGCLSEAVAVIQSIPVFNESGRFS-FTLPYPLRMKVRFSFF 327

Query:   183 NVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEK 217
               +QV  VM        + H+ KQR  + G++++K
Sbjct:   328 --LQVYLVMLFLGLYINFRHLYKQRRRRYGQKKKK 360

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0007254 "JNK cascade" evidence=ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Y1H2	HACD2_HUMAN	4, ., 2, ., 1, ., -	0.3255	0.9363	0.8110	yes	no
O17040	HACD_CAEEL	4, ., 2, ., 1, ., 1, 3, 4	0.3256	0.9545	0.9633	yes	no
Q5RBK3	HACD2_PONAB	4, ., 2, ., 1, ., -	0.3255	0.9363	0.8078	yes	no
Q2KIP8	HACD2_BOVIN	4, ., 2, ., 1, ., -	0.3255	0.9363	0.8110	yes	no
Q9D3B1	HACD2_MOUSE	4, ., 2, ., 1, ., -	0.3209	0.9363	0.8110	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I1406 hypothetical protein (219 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam04387	161	pfam04387, PTPLA, Protein tyrosine phosphatase-lik	4e-54
PLN02838	221	PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase	6e-25
COG5198	209	COG5198, Ptpl, Protein tyrosine phosphatase-like p	2e-15

>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA

 Score =  170 bits (432), Expect = 4e-54
 Identities = 68/159 (42%), Positives = 96/159 (60%)

Query: 55  QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLI 114
           QT A LE++H A G++ S V   F+Q   R          + +VQ  P++    +AW + 
Sbjct: 1   QTLAVLEILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQASPAVPSLLIAWSIT 60

Query: 115 EVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFF 174
           E+IRY +YALN +G  P+WLT+LRYT+FI LYP+GVL E+LL+ Q+ PY K+ ++     
Sbjct: 61  EIIRYSYYALNLLGTVPYWLTWLRYTLFIVLYPLGVLSELLLIYQSLPYTKKYSLEMPNA 120

Query: 175 AGLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGK 213
               FSYY  +  V ++Y   +  LYSHMLKQR   LGK
Sbjct: 121 LNFSFSYYYFLIFVLLLYIPGFPVLYSHMLKQRRKVLGK 159

This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types. Length = 161

>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of elongase

 Score = 97.2 bits (242), Expect = 6e-25
 Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 9   KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
           +LYL  YN +   GW   +++ ++ L  +   A  +A+    + + QTAA LE++HG VG
Sbjct: 10  RLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEA-VYAAVERPLQLAQTAAVLEILHGLVG 68

Query: 69  ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN-TI 127
           ++ S V     Q   R            +V+ H  +    ++W + E+IRY F+ +    
Sbjct: 69  LVRSPVSATLPQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAF 128

Query: 128 GACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFA-------NFFAGLPFS 180
           G  P WL +LRY+ F+ LYP G+  E+ L+  A PYMK    +        NF     F 
Sbjct: 129 GFAPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPYMKASEKYCLRMPNKWNF----SFD 184

Query: 181 YYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGK 213
           Y+    +V  +Y      +YS+ML QR   L K
Sbjct: 185 YFYASILVLAIYVPGSPHMYSYMLGQRKKALSK 217

Length = 221

>gnl|CDD|227525 COG5198, Ptpl, Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN+     W + + +       T   A  F     +  ++QT A +E  + + G +
Sbjct: 9   YLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKV 67

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGAC 130
            S      MQ   R             + +  +      AW + E++RY FY     G  
Sbjct: 68  NSRYLTTVMQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNGI- 126

Query: 131 PHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFAGLPFSYYNVV-QVVF 189
           P+ L  LRY +F+ LYPIG + EM  L   +             AG  FS   VV  +V 
Sbjct: 127 PNTLRVLRYNLFLILYPIGFVSEMYCLRALYNA-----------AGKIFSLLKVVLPIVM 175

Query: 190 VMYPFAWIKLYSHMLKQR 207
           ++Y   +I L+SHML QR
Sbjct: 176 LLYIPGFIFLFSHMLAQR 193

Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PLN02838	221	3-hydroxyacyl-CoA dehydratase subunit of elongase	100.0
KOG3187	223	consensus Protein tyrosine phosphatase-like protei	100.0
PF04387	164	PTPLA: Protein tyrosine phosphatase-like protein,	100.0
COG5198	209	Ptpl Protein tyrosine phosphatase-like protein (co	100.0

>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase

Probab=100.00  E-value=2.3e-76  Score=507.41  Aligned_cols=213  Identities=30%  Similarity=0.537  Sum_probs=197.7

Q ss_pred             CCCC-CCchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhh
Q 027698            1 MAHQ-RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFM   79 (220)
Q Consensus         1 ~~~~-~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~   79 (220)
                      ||.| .+++|.||++||++|++||++||++++.++...|+ .+.|+++++.++++|++|++||+|+++|+||||+.||++
T Consensus         1 ~~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~   79 (221)
T PLN02838          1 MAGFGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLP   79 (221)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHH
Confidence            4444 34789999999999999999999999999988774 446999999999999999999999999999999999999


Q ss_pred             hhccceeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHh-hcCCCCchhhhhhhccccccccchhhHHHHHHH
Q 027698           80 QWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN-TIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN  158 (220)
Q Consensus        80 QV~sR~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~-l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~  158 (220)
                      ||+||++++|||++..||+++++.++.|++|||++|+||||||+++ +.|.+|++|+|||||+|+||||+|+.||+.++|
T Consensus        80 QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~  159 (221)
T PLN02838         80 QIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIY  159 (221)
T ss_pred             HHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997 459999999999999999999999999999999


Q ss_pred             HhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 027698          159 QAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR  214 (220)
Q Consensus       159 ~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~  214 (220)
                      +|+|++++++.|+.+||   |++|++.+++++++++|+||+|+||+||++||||+++|+
T Consensus       160 ~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k  218 (221)
T PLN02838        160 IALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKS  218 (221)
T ss_pred             HhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999   555556667888999999999999999999999999754

>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=100.00  E-value=1.4e-67  Score=449.91  Aligned_cols=214  Identities=35%  Similarity=0.609  Sum_probs=204.2

Q ss_pred             CchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhhhhccce
Q 027698            6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT   85 (220)
Q Consensus         6 ~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR~   85 (220)
                      .+++.||++||++|++||.+++..+......+|+.+++|+++++.++++|++|++|++|+.+|+|+|++.+|++||.||+
T Consensus         7 ~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl   86 (223)
T KOG3187|consen    7 MLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRL   86 (223)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccc
Confidence            46799999999999999999999999999998888888999999999999999999999999999999999999999999


Q ss_pred             eeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchhh
Q 027698           86 LFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMK  165 (220)
Q Consensus        86 ~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~~alp~~~  165 (220)
                      +++|++++..|+++.++.+..++++|+++|++||+||++++.|..|++++|||||+|++|||+|++||+.++++|+|+.+
T Consensus        87 ~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~al~~~~  166 (223)
T KOG3187|consen   87 FILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLYAALPAAG  166 (223)
T ss_pred             eehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccchhhhhc
Q 027698          166 EKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK  219 (220)
Q Consensus       166 ~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~~~k~k  219 (220)
                      +++.|+++||   |++||+.+|+++++++|+||+|++|+||.+||||.++++++|||
T Consensus       167 ~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~  223 (223)
T KOG3187|consen  167 ETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK  223 (223)
T ss_pred             ccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence            9999999999   66667777888889999999999999999999999987766653

>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=100.00  E-value=1.7e-64  Score=417.36  Aligned_cols=161  Identities=44%  Similarity=0.802  Sum_probs=156.5

Q ss_pred             HHHHHHHhhhhhcccccCcccchhhhhccceeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchh
Q 027698           55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL  134 (220)
Q Consensus        55 Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L  134 (220)
                      |++|++||+|+++|+||||+.||++||+||++++|++++..||++++++++.|++|||++|+||||||+++++|.+|++|
T Consensus         1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L   80 (164)
T PF04387_consen    1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWL   80 (164)
T ss_pred             CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccccccchhhHHHHHHHHhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccc
Q 027698          135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKL  211 (220)
Q Consensus       135 ~WLRYt~FivLYPiGv~~E~~~i~~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l  211 (220)
                      +|||||+|+||||+|++||+.++++|+|++++++.|+.+||   |++|++++++.+++++|+||+|+||+||++||||++
T Consensus        81 ~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l  160 (164)
T PF04387_consen   81 TWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKL  160 (164)
T ss_pred             HHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999   667788888999999999999999999999999999


Q ss_pred             cchh
Q 027698          212 GKRQ  215 (220)
Q Consensus       212 ~~~~  215 (220)
                      +|+|
T Consensus       161 ~~~~  164 (164)
T PF04387_consen  161 GKKK  164 (164)
T ss_pred             ccCC
Confidence            8764

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].

>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=100.00  E-value=3.5e-52  Score=340.74  Aligned_cols=197  Identities=27%  Similarity=0.412  Sum_probs=172.3

Q ss_pred             CCchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhhhhccc
Q 027698            5 RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR   84 (220)
Q Consensus         5 ~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR   84 (220)
                      +.++-.||-+||.++|.+|.+++.+....+...++.+ .+++..+...++|++|++|+.|+.+|.|+|++.||.+||.||
T Consensus         3 k~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SR   81 (209)
T COG5198           3 KALPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISR   81 (209)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHH
Confidence            3455689999999999999999998888777777777 488899999999999999999999999999999999999999


Q ss_pred             eeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchh
Q 027698           85 TLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYM  164 (220)
Q Consensus        85 ~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~~alp~~  164 (220)
                      ++++|||+.+.-.+-++|.++.+.+|||++|++||.||++++-| .|..|+|||||+|.+|||+|+.+|+.|++.+.--.
T Consensus        82 l~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~naa  160 (209)
T COG5198          82 LFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAA  160 (209)
T ss_pred             HHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence            99999999665554458999999999999999999999999855 79999999999999999999999999998876543


Q ss_pred             hhhcccccccCCccchHH-HHHHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 027698          165 KEKNIFANFFAGLPFSYY-NVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR  214 (220)
Q Consensus       165 ~~~~~~s~~mP~~~f~~~-~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~  214 (220)
                      +.  .|         ++. -.+.+++++|+|||++||+||++||||..+.+
T Consensus       161 ~~--~~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~~  200 (209)
T COG5198         161 GK--IF---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKVK  200 (209)
T ss_pred             HH--HH---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            33  22         223 23567889999999999999999999998533

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00