Citrus Sinensis ID: 027715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MTSIIPGHQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEEHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccccccccccEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEEEHHHcccccEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHcc
Coil and Loop (DISEMBL)
mtsiipghqfnwsvgveehhlhrarfnkiipysryfgsnfpykglfsshdkhisgcgpifcsavddgndpddgsgddtsnkkespkdengvnseLLRENLErivgvddstfsgLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMeqrsfplteeEYILRLDDVANTLKCWGAVSHIRNSLAKlkerprigkAVSIFIDmdesggranewiyk
Flexible Loop (DISEMBL)
mtsiipghqfnwsVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVDDGNDPDDGSgddtsnkkespkdengvnselLRENLErivgvddstfsglDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIrnslaklkerprigkavsifidmdesggranewiyk
Low Complexity Region (SEG)
MTSIIPGHQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVddgndpddgsgddTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK
Disordered region (IsUnstruct)
****IPGHQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAV**********************************NLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDM*************
Disordered Region (DISOPRED)
*********FNWSVGVE******A**NKIIPYSRYFGSNFPYKGLFS***************************************************************FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK
Disordered Region (DISEMBL)
MTSIIPGHQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVDDGN***********************NSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK
Disordered Region (DISPRO)
*******HQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVD*******************************RENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESG*RAN***Y*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSIIPGHQFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
297738248	265	unnamed protein product [Vitis vinifera]	0.968	0.803	0.691	6e-78
225425067	223	PREDICTED: uncharacterized protein LOC10	0.968	0.955	0.691	9e-78
224109022	233	predicted protein [Populus trichocarpa]	0.990	0.935	0.676	4e-77
449445336	250	PREDICTED: uncharacterized protein LOC10	0.940	0.828	0.629	2e-71
388505906	222	unknown [Lotus japonicus]	0.95	0.941	0.617	2e-68
297834926	223	hypothetical protein ARALYDRAFT_479508 [	0.968	0.955	0.604	2e-64
18402409	222	uncharacterized protein [Arabidopsis tha	0.968	0.959	0.585	5e-61
116789392	224	unknown [Picea sitchensis]	0.827	0.812	0.618	5e-61
11994202	232	unnamed protein product [Arabidopsis tha	0.968	0.918	0.585	8e-61
255546634	243	conserved hypothetical protein [Ricinus	0.868	0.786	0.634	1e-59

>gi|297738248|emb|CBI27449.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 177/227 (77%), Gaps = 14/227 (6%)

Query: 3   SIIPGHQFNWSVGVEEHHLHRARFNKII-PYSRYFGSNFPYKGLFSSHDKHISG------ 55
           +++ G+  N  +G++ +H  R RFN+II P S   G   P +G F  H + ++G      
Sbjct: 44  TMLSGNHCNLWLGIQ-NHPSRGRFNQIICPGS---GPYIPSRGSFFYHGQCLAGSSHQSA 99

Query: 56  --CGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSG 113
             C PIF S VDDG DPDD S D    K+ S  +  GVNSE++RENLERIVG DDSTFSG
Sbjct: 100 RRCRPIFSSTVDDGMDPDD-SEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTFSG 158

Query: 114 LDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVAN 173
           LDLATLIR KYGRSYDV LIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEY+LRLDDVAN
Sbjct: 159 LDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDVAN 218

Query: 174 TLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           TLKCWGA+SHIRNSL KLKERPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 219 TLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425067|ref|XP_002271912.1| PREDICTED: uncharacterized protein LOC100247903 [Vitis vinifera]

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 177/227 (77%), Gaps = 14/227 (6%)

Query: 3   SIIPGHQFNWSVGVEEHHLHRARFNKII-PYSRYFGSNFPYKGLFSSHDKHISG------ 55
           +++ G+  N  +G++ +H  R RFN+II P S   G   P +G F  H + ++G      
Sbjct: 2   TMLSGNHCNLWLGIQ-NHPSRGRFNQIICPGS---GPYIPSRGSFFYHGQCLAGSSHQSA 57

Query: 56  --CGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSG 113
             C PIF S VDDG DPDD S D    K+ S  +  GVNSE++RENLERIVG DDSTFSG
Sbjct: 58  RRCRPIFSSTVDDGMDPDD-SEDGIDKKQPSNGELGGVNSEMIRENLERIVGSDDSTFSG 116

Query: 114 LDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVAN 173
           LDLATLIR KYGRSYDV LIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEY+LRLDDVAN
Sbjct: 117 LDLATLIRNKYGRSYDVLLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYLLRLDDVAN 176

Query: 174 TLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           TLKCWGA+SHIRNSL KLKERPRIGKAVSIFIDMDESGGR+NEWIYK
Sbjct: 177 TLKCWGAISHIRNSLEKLKERPRIGKAVSIFIDMDESGGRSNEWIYK 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109022|ref|XP_002315054.1| predicted protein [Populus trichocarpa] gi|222864094|gb|EEF01225.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 173/235 (73%), Gaps = 17/235 (7%)

Query: 1   MTSIIPGHQFNWSVG---VEEHHLHRARF--NKIIPYSRYFGSNFPYKGLFSSHDKHI-- 53
           M+SI+ GH  NWS+G   V+EH L R RF  NK+       G   P +GL  S  + +  
Sbjct: 1   MSSIVSGHHCNWSLGGAGVQEHFLCRGRFYSNKVPCPGDNHG--LPCRGLIFSTPQSLAS 58

Query: 54  SGC--------GPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVG 105
           S C         P+F S VDD  D DD   D   +K  S  +  G++SELLRENLERIVG
Sbjct: 59  SSCYRPSTRKYRPVFSSTVDDPRDQDDPEEDGARDKDSSKGETGGIDSELLRENLERIVG 118

Query: 106 VDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYI 165
            DDS FSG+DLATLIR KYGRSYDVQLIKKEFMGRNLLALNVMWKY EQRSFPLTEEEYI
Sbjct: 119 SDDSAFSGIDLATLIRNKYGRSYDVQLIKKEFMGRNLLALNVMWKYREQRSFPLTEEEYI 178

Query: 166 LRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           LRLDDVANTLKCWGAVSHIRNSL K KERPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 179 LRLDDVANTLKCWGAVSHIRNSLEKSKERPRIGKAVSIFIDMDESGGRANEWIYK 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445336|ref|XP_004140429.1| PREDICTED: uncharacterized protein LOC101207332 [Cucumis sativus]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/232 (62%), Positives = 169/232 (72%), Gaps = 25/232 (10%)

Query: 1   MTSIIPGHQFNWSVGVE-EHHLHRARFNKI--IPYSRYFGSNFPYKGLFSSHDKHISGCG 57
           MTS+  GHQ NWS G+  + HL R + +++   P+        P     + H  H++ C 
Sbjct: 32  MTSVTFGHQSNWSPGIGIQEHLGRTKISRVDCCPF-------LPS----THHGNHVAYCR 80

Query: 58  --------PIFCSAVDDGNDPDDGSGDDTSNKKESPKDEN-GVNSELLRENLERIVGVDD 108
                   P+F  ++D   DPDD   D   N  ESPK EN G+N E+LRENLER VG DD
Sbjct: 81  RRTGRQLRPVFAGSIDGAMDPDDP--DHRINDSESPKTENEGMNFEMLRENLERSVGTDD 138

Query: 109 STFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRL 168
           S FSG+DLATLIR KYG+SYDVQLIKKEFMGRNLLALNVMWKY EQ+SFPL+EEEY+LRL
Sbjct: 139 SRFSGIDLATLIRNKYGKSYDVQLIKKEFMGRNLLALNVMWKYREQKSFPLSEEEYLLRL 198

Query: 169 DDVANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           D VANTLKCWGAV+HIRNSL K K+RPRIGKAVSIFIDMDESGGRANEWIYK
Sbjct: 199 DGVANTLKCWGAVAHIRNSLDKTKDRPRIGKAVSIFIDMDESGGRANEWIYK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505906|gb|AFK41019.1| unknown [Lotus japonicus]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/230 (61%), Positives = 166/230 (72%), Gaps = 21/230 (9%)

Query: 3   SIIPGHQFNWSVGVEEH----HLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISG--- 55
           +I+  HQ  W + V ++    ++H+A      P+  Y G+    +GL S +  +++G   
Sbjct: 2   NIMSTHQCGWPLRVPDNPDRGNIHKA------PFPGYTGTYSTSRGLDSRNVGYLAGKCH 55

Query: 56  -----CGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDST 110
                C P+F S V D  DP D    D +  +    DE+   S+ LRE+LE+IVG DDS 
Sbjct: 56  HNARKCRPVFSSLVSDSLDPYDSDDKDKNIPQNGEIDEH---SKKLRESLEKIVGTDDSA 112

Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDD 170
           FSG DLATLIR KYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPL+EEEYILRLDD
Sbjct: 113 FSGFDLATLIRNKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLSEEEYILRLDD 172

Query: 171 VANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           VANTLKCWGAVSHIRNSLAK KERPRIGKAVS+FIDMDESG RANEWIYK
Sbjct: 173 VANTLKCWGAVSHIRNSLAKSKERPRIGKAVSLFIDMDESGARANEWIYK 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834926|ref|XP_002885345.1| hypothetical protein ARALYDRAFT_479508 [Arabidopsis lyrata subsp. lyrata] gi|297331185|gb|EFH61604.1| hypothetical protein ARALYDRAFT_479508 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/230 (60%), Positives = 157/230 (68%), Gaps = 17/230 (7%)

Query: 1   MTSIIPGHQFNWSVGVEEHHLHRARFNKI--IPYSRYFGSNFPYKGLFS-SHDKHISGCG 57
           M SI+  H       + E    R     I  +  SRY G  F  +  FS S     + CG
Sbjct: 1   MMSIVSSHHHCQPSVIHE----RCSIGTISKVSCSRYCGPCFSGRLAFSHSLCLKTTTCG 56

Query: 58  PI-------FCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDST 110
                     CS VDD  +PD+   DD + +    K +   N ++ R NLER+VG DDS 
Sbjct: 57  KTARRRFSRICSIVDDEMNPDNS--DDEAKESLDDKTKRQAN-DMNRANLERMVGSDDSA 113

Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDD 170
           F+GLDLATLIR+KYG+SYDVQLIKKEFMGRNLLA+NVMWKY EQRSFPLTEEEYILRLDD
Sbjct: 114 FNGLDLATLIRQKYGKSYDVQLIKKEFMGRNLLAMNVMWKYREQRSFPLTEEEYILRLDD 173

Query: 171 VANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           VAN LKCWGAVSHIRNSLAK KERPRIGKAVSIFIDMD +GGRANEWIYK
Sbjct: 174 VANMLKCWGAVSHIRNSLAKSKERPRIGKAVSIFIDMDSTGGRANEWIYK 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402409|ref|NP_566650.1| uncharacterized protein [Arabidopsis thaliana] gi|21554124|gb|AAM63204.1| unknown [Arabidopsis thaliana] gi|24030263|gb|AAN41306.1| unknown protein [Arabidopsis thaliana] gi|222424183|dbj|BAH20050.1| AT3G19900 [Arabidopsis thaliana] gi|332642785|gb|AEE76306.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 154/229 (67%), Gaps = 16/229 (6%)

Query: 1   MTSIIPGHQFNWSVGVEEHHLHRARFNKI--IPYSRYFGSNFPYKGLFSSHDKHISGCGP 58
           M SI+  H       + E    R+    I  +  SRY G  F  +  FS      +  G 
Sbjct: 1   MMSIVSSHHHCQQSVIHE----RSGIGTISKVSCSRYCGPCFSGRLAFSHSLCLKTTYGK 56

Query: 59  I-------FCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTF 111
                    CS VDD  + D+   DD   +    K +   N ++ R NLER+VG DDS F
Sbjct: 57  TDRRKFSRICSIVDDEGNLDNS--DDEEKESLDDKTKRQAN-DMNRANLERMVGSDDSAF 113

Query: 112 SGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDV 171
           +GLDLATLIR+KYG+SYDVQLIKKEFMG+NLLA+NVMWKY EQRSFPLTEEEYILRLDDV
Sbjct: 114 NGLDLATLIRQKYGKSYDVQLIKKEFMGKNLLAMNVMWKYREQRSFPLTEEEYILRLDDV 173

Query: 172 ANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           AN LKCWGAVSHIR+SLAK KERPRIGKAVSIFIDMD +GGRANEWIYK
Sbjct: 174 ANMLKCWGAVSHIRSSLAKSKERPRIGKAVSIFIDMDSTGGRANEWIYK 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789392|gb|ABK25235.1| unknown [Picea sitchensis]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 141/199 (70%), Gaps = 17/199 (8%)

Query: 30  IPYSRYFGSNFPYKGLFSSHDKHISGCGPIFCSAV--------DDGNDPDDGSGDDTSNK 81
           + ++    + FP +  F   +   S    I   A         DD  D D  SGD     
Sbjct: 35  VAFTPLLVTLFPQRNFFGCINLRQSKMKAIVVRATLGEKEPNEDDNEDHDQVSGD----- 89

Query: 82  KESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRN 141
               K+ N +N    R++LERIVG DDS FSG++LA+LIR KYGRSYDV LIKKEFMGRN
Sbjct: 90  ----KNSNNMNENKFRKDLERIVGKDDSAFSGIELASLIRNKYGRSYDVTLIKKEFMGRN 145

Query: 142 LLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGKAV 201
           LLA+NVMWKY EQRSFPLTEEEY+LRLDDVAN LKCWGAVSHIRNSLAK +ERPRIGKAV
Sbjct: 146 LLAMNVMWKYREQRSFPLTEEEYLLRLDDVANNLKCWGAVSHIRNSLAKSRERPRIGKAV 205

Query: 202 SIFIDMDESGGRANEWIYK 220
           SIFID+DESGGRANEWIY+
Sbjct: 206 SIFIDLDESGGRANEWIYR 224

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994202|dbj|BAB01305.1| unnamed protein product [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 154/229 (67%), Gaps = 16/229 (6%)

Query: 1   MTSIIPGHQFNWSVGVEEHHLHRARFNKI--IPYSRYFGSNFPYKGLFSSHDKHISGCGP 58
           M SI+  H       + E    R+    I  +  SRY G  F  +  FS      +  G 
Sbjct: 11  MMSIVSSHHHCQQSVIHE----RSGIGTISKVSCSRYCGPCFSGRLAFSHSLCLKTTYGK 66

Query: 59  I-------FCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTF 111
                    CS VDD  + D+   DD   +    K +   N ++ R NLER+VG DDS F
Sbjct: 67  TDRRKFSRICSIVDDEGNLDNS--DDEEKESLDDKTKRQAN-DMNRANLERMVGSDDSAF 123

Query: 112 SGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDV 171
           +GLDLATLIR+KYG+SYDVQLIKKEFMG+NLLA+NVMWKY EQRSFPLTEEEYILRLDDV
Sbjct: 124 NGLDLATLIRQKYGKSYDVQLIKKEFMGKNLLAMNVMWKYREQRSFPLTEEEYILRLDDV 183

Query: 172 ANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           AN LKCWGAVSHIR+SLAK KERPRIGKAVSIFIDMD +GGRANEWIYK
Sbjct: 184 ANMLKCWGAVSHIRSSLAKSKERPRIGKAVSIFIDMDSTGGRANEWIYK 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546634|ref|XP_002514376.1| conserved hypothetical protein [Ricinus communis] gi|223546473|gb|EEF47972.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 146/205 (71%), Gaps = 14/205 (6%)

Query: 1   MTSIIPGHQFNWSVGVEEH-HLHRARF----NKIIPYSRYFGSNFPYKGLFSSHDKHISG 55
           M+SII     N SVG     HL R R+    N  +P  R   + F  + L     +    
Sbjct: 1   MSSIISSQHCNLSVGAHHQDHLCRGRYYNCNNNKLPCFRCSYAQFSCRLLSVRKSR---- 56

Query: 56  CGPIFCSAVDDGNDPDDGSGDDTSNKKESPKDENGVNSELLRENLERIVGVDDSTFSGLD 115
             P+F + VD  N+ +D S D+  N+  S  D  GV+SE+LR NLERIVG DDS FSG+D
Sbjct: 57  -PPVFSTPVD--NNVNDESEDE--NEDTSKDDVGGVDSEILRRNLERIVGTDDSAFSGID 111

Query: 116 LATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTL 175
           LATLIR KYGRSYDVQLIKKEFMGRNLLALNVMW+YMEQRSFPLTEEEYILRLDDVANTL
Sbjct: 112 LATLIRNKYGRSYDVQLIKKEFMGRNLLALNVMWRYMEQRSFPLTEEEYILRLDDVANTL 171

Query: 176 KCWGAVSHIRNSLAKLKERPRIGKA 200
           KCWGAVSHIRNSLAK KERPRIGKA
Sbjct: 172 KCWGAVSHIRNSLAKSKERPRIGKA 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2092261	222	AT3G19900 "AT3G19900" [Arabido	0.636	0.630	0.801	2.5e-56

TAIR|locus:2092261 AT3G19900 "AT3G19900" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 113/141 (80%), Positives = 126/141 (89%)

Query:    81 KKESPKDENGVNS-ELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMG 139
             +KES  D+    + ++ R NLER+VG DDS F+GLDLATLIR+KYG+SYDVQLIKKEFMG
Sbjct:    82 EKESLDDKTKRQANDMNRANLERMVGSDDSAFNGLDLATLIRQKYGKSYDVQLIKKEFMG 141

Query:   140 RNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLKERPRIGK 199
             +NLLA+NVMWKY EQRSFPLTEEEYILRLDDVAN LKCWGAVSHIR+SLAK KERPRIGK
Sbjct:   142 KNLLAMNVMWKYREQRSFPLTEEEYILRLDDVANMLKCWGAVSHIRSSLAKSKERPRIGK 201

Query:   200 AVSIFIDMDESGGRANEWIYK 220
             AVSIFIDMD +GGRANEWIYK
Sbjct:   202 AVSIFIDMDSTGGRANEWIYK 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       207   0.00099  111 3  11 22  0.50    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.30u 0.08s 19.38t   Elapsed:  00:00:03
  Total cpu time:  19.30u 0.08s 19.38t   Elapsed:  00:00:03
  Start:  Sat May 11 06:15:22 2013   End:  Sat May 11 06:15:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_X1514	hypothetical protein (233 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0063005001	hypothetical protein (186 aa)			•	•					0.550
	eugene3.00061626	hypothetical protein (259 aa)			•	•					0.517
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•						0.506
	grail3.0089000701	hypothetical protein (311 aa)			•						0.505
	grail3.0025021301	hypothetical protein (173 aa)			•						0.505
	estExt_fgenesh4_pg.C_LG_II1804	SubName- Full=Putative uncharacterized protein; (127 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_XIV2304	hypothetical protein (126 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•						0.504
	gw1.XII.99.1	hypothetical protein (203 aa)			•						0.503
	gw1.I.8641.1	annotation not avaliable (113 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam11267	99	pfam11267, DUF3067, Protein of unknown function (D	1e-36

>gnl|CDD|204620 pfam11267, DUF3067, Protein of unknown function (DUF3067)

 Score =  123 bits (311), Expect = 1e-36
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 7/106 (6%)

Query: 113 GLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVA 172
           G +L  L+R ++G SYDVQL ++    R  + L VMWKY+EQ SFPL+EEEY   LD VA
Sbjct: 1   GDELHQLLRDRWGASYDVQLRRR----RGRIYLQVMWKYLEQASFPLSEEEYREHLDAVA 56

Query: 173 NTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWI 218
             L  WG    +R  L   +E+PR+GKAVSI +D+ E   RA+EW+
Sbjct: 57  EYLNRWGQAEAVREWLETTREKPRLGKAVSIPLDLGE---RASEWL 99

This family of proteins has no known function. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF11267	99	DUF3067: Protein of unknown function (DUF3067); In	100.0

>PF11267 DUF3067: Protein of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function

Probab=100.00  E-value=1.7e-55  Score=344.07  Aligned_cols=99  Identities=57%  Similarity=1.011  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHhcC
Q 027715          113 GLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAKLK  192 (220)
Q Consensus       113 G~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L~~T~  192 (220)
                      |+||++||++|||+||||||+|++    ++|||||||+||||+||||||+||++||++||++||+||++++||+||++|+
T Consensus         1 g~eL~~ll~~KwG~sYDvql~r~~----~~v~lqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~t~   76 (99)
T PF11267_consen    1 GQELRDLLREKWGRSYDVQLRRRR----GRVYLQVMWKYLEQRSFPLTEEEYLEHLDAVAEYLNAWGQADQVRAFLEETR   76 (99)
T ss_dssp             HHHHHHHHHHHHSS-EEEEEEEET----TEEEEEEEEEETTSTT-SS-HHHHHHHHHHHHHHHHHHS-HHHHHHHHHH--
T ss_pred             ChHHHHHHHHHhCCcceeEEEEEc----CEEEEEEehhhccCCCcCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHhCC
Confidence            789999999999999999999995    6699999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEeeecCCCCccccccc
Q 027715          193 ERPRIGKAVSIFIDMDESGGRANEWI  218 (220)
Q Consensus       193 eRPRlGkAVSIpLdLd~~g~R~sEWi  218 (220)
                      +|||+||||||||||   |+|++|||
T Consensus        77 ~rPRlGkAVsipL~l---~~r~~Ewl   99 (99)
T PF11267_consen   77 ERPRLGKAVSIPLDL---GERASEWL   99 (99)
T ss_dssp             ---BTTB-EEEEE-----HHHHHHHH
T ss_pred             CCCCCCeEEEEeecC---CchhhhcC
Confidence            999999999999999   99999997

; PDB: 2LJW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
2ljw_A	110	Solution Nmr Structure Of Alr2454 Protein From Nost		2e-19

>pdb|2LJW|A Chain A, Solution Nmr Structure Of Alr2454 Protein From Nostoc Sp. Strain Pcc 7120, Northeast Structural Genomics Consortium Target Nsr264 Length = 110

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDD 170
            +G +L  L+  K+G SYDVQ  + +  G+  + L VMWKY+EQ SFP+ E EY   LD 
Sbjct: 1   MTGQELRQLLLDKWGYSYDVQFRRTQ--GK--IFLQVMWKYLEQASFPMNETEYQEHLDS 56
Query: 171 VANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWI 218
           VAN L   G    ++  + + KERPR+GKAVSI +D+   G RA+EWI
Sbjct: 57  VANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDL---GERASEWI 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2ljw_A	110	ALR2454 protein; novel fold, structural genomics,	2e-46

>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP} Length = 110

 Score =  148 bits (375), Expect = 2e-46
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 7/109 (6%)

Query: 112 SGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDV 171
           +G +L  L+  K+G SYDVQ  +     +  + L VMWKY+EQ SFP+ E EY   LD V
Sbjct: 2   TGQELRQLLLDKWGYSYDVQFRRT----QGKIFLQVMWKYLEQASFPMNETEYQEHLDSV 57

Query: 172 ANTLKCWGAVSHIRNSLAKLKERPRIGKAVSIFIDMDESGGRANEWIYK 220
           AN L   G    ++  + + KERPR+GKAVSI +D+   G RA+EWI  
Sbjct: 58  ANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDL---GERASEWIIL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2ljw_A	110	ALR2454 protein; novel fold, structural genomics,	100.0

>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}

Probab=100.00  E-value=1.6e-57  Score=359.88  Aligned_cols=102  Identities=48%  Similarity=0.842  Sum_probs=99.2

Q ss_pred             ccHHHHHHHHHHHhCccccceeEEEeecCcceEEEeeehhhhcccCCCCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHh
Q 027715          111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQRSFPLTEEEYILRLDDVANTLKCWGAVSHIRNSLAK  190 (220)
Q Consensus       111 mtG~EL~~LL~~KWG~sYDvqL~r~~~~Gk~~lyLqVMWkyLEQrSFPLtE~EYlehLd~VAe~Ln~wG~~d~Vr~~L~~  190 (220)
                      |||+||++||++|||+||||||+|++    ++|||||||+||||+||||||+||++||++||++||+||++++||+||++
T Consensus         1 mtG~eL~~ll~~KWG~sYDvql~r~~----~~vylqVMW~yLeQ~SFPltE~eY~~hL~~va~~L~~wG~~~~Vr~~l~~   76 (110)
T 2ljw_A            1 MTGQELRQLLLDKWGYSYDVQFRRTQ----GKIFLQVMWKYLEQASFPMNETEYQEHLDSVANYLHALGGAVQVKTFITQ   76 (110)
T ss_dssp             CCHHHHHHHHHHHHSSCEEEEEEEET----TEEEEEEEEEETTSTTCSSCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCcceeEEEEEC----CEEEEEeehHhhccCCCCCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence            79999999999999999999999973    56999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceEEEeeecCCCCcccccccc
Q 027715          191 LKERPRIGKAVSIFIDMDESGGRANEWIY  219 (220)
Q Consensus       191 T~eRPRlGkAVSIpLdLd~~g~R~sEWi~  219 (220)
                      |++|||+||||||||||   |+|++|||.
T Consensus        77 t~~rPRlGkAVsipLdl---g~r~~E~~~  102 (110)
T 2ljw_A           77 TKERPRLGKAVSIPLDL---GERASEWII  102 (110)
T ss_dssp             CCCCCBTTBCEEEEECC---HHHHHHHHT
T ss_pred             CCCCCCCCeEEEEeecC---Cccchhhhh
Confidence            99999999999999999   999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00