Citrus Sinensis ID: 027742

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEEccccccccccHHHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEccccc
Coil and Loop (DISEMBL)
mlinrflrrgfctavarpwlfvglgnpgdkykgtrhnqVGFEMIDAFAEsqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngLKSVMNNFRGNREFARLRigigrppgqmdpkAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Flexible Loop (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIgrppgqmdPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSkgltesarhfntiqkykhirlqnmpa
Low Complexity Region (SEG)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVlrlrhngghgghnglKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered region (IsUnstruct)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI*******
Disordered Region (DISOPRED)
**************VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN***************
Disordered Region (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered Region (DISPRO)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKH*RLQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.963	0.963	0.755	4e-90
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.894	0.765	0.578	4e-65
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.876	0.741	0.580	8e-64
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.885	0.673	0.558	7e-63
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.890	0.78	0.551	6e-62
Q9LF14	240	Chloroplastic group IIB i	no	no	0.876	0.8	0.575	4e-61
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.876	0.780	0.590	6e-61
Q10LI6	186	CRS2-like protein, chloro	no	no	0.529	0.623	0.743	3e-43
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.817	0.840	0.430	1e-41
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.849	0.989	0.407	1e-38

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  330 bits (846), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 161/213 (75%), Positives = 181/213 (84%), Gaps = 2/213 (0%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ 
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNF 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL
Sbjct: 60  KAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
           +  GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D A
Sbjct: 120 QEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKA 179

Query: 181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 213
           L EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct: 180 LAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 149/197 (75%), Gaps = 1/197 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 61  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 119

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 120 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 179

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 180 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 239

Query: 198 ESARHFNTIQKYKHIRL 214
            S   FN +QKYK  R+
Sbjct: 240 GSTERFNLVQKYKFHRV 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 144/193 (74%), Gaps = 1/193 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL 
Sbjct: 64  PWLIAGLGNPGSKYHGTRHN-VGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLV 122

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GVLRL+  GGHG HNGL++VM 
Sbjct: 123 KPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVME 182

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
               +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 183 CLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFS 242

Query: 198 ESARHFNTIQKYK 210
            S   FN +QKYK
Sbjct: 243 GSIERFNLVQKYK 255

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  239 bits (611), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 151/195 (77%), Gaps = 1/195 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG KY+GTRHN VGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LA
Sbjct: 94  PWLIVGLGNPGKKYQGTRHN-VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLA 152

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL   GGHGGHNG++S+++
Sbjct: 153 KPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIID 212

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
             +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  
Sbjct: 213 RLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFN 272

Query: 198 ESARHFNTIQKYKHI 212
           +SA   NT +  + +
Sbjct: 273 KSATFVNTRKSMEQL 287

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  236 bits (603), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLL 76
           +PWLFVGLGNPG  Y+GTRHN VGFEMID  AE++GIS++++  KA  G+G +GDAP++L
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHN-VGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIML 112

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
           AKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP   LRL   GGHGGHNG++S++
Sbjct: 113 AKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSII 172

Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
           N+ + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G 
Sbjct: 173 NHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGF 232

Query: 197 TESARHFNTIQKYKHI 212
            +SA + NT Q  + +
Sbjct: 233 NKSATYVNTAQSSEML 248

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  234 bits (597), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG+KY GTRHN VGFEMID  A  +G+ MNT+  KA  G G + D P+LLA
Sbjct: 45  PWLIVGLGNPGNKYHGTRHN-VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLA 103

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+  GG G HNG+KSVM 
Sbjct: 104 KPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMG 163

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  
Sbjct: 164 HLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFN 223

Query: 198 ESARHFNTIQKYK 210
           +    FN +QKYK
Sbjct: 224 QGISRFNLVQKYK 236

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  233 bits (595), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL VGLGNPG KY GTRHN +GFEMID  A +  ISMNT+  KA  G G VG+ P+LL 
Sbjct: 51  PWLIVGLGNPGLKYYGTRHN-IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLV 109

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+  GGH  HNGLK+V  
Sbjct: 110 KPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTE 169

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G +
Sbjct: 170 HLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFS 229

Query: 198 ESARHFNTIQKYK 210
           +S   FN  QKYK
Sbjct: 230 DSISRFNLGQKYK 242

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 95/117 (81%), Gaps = 1/117 (0%)

Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPV 74
           V  PWLFVGLGNPG+KY+ TRHN VGF+MID FA+SQGIS+     KA FG+G V   PV
Sbjct: 57  VINPWLFVGLGNPGEKYQCTRHN-VGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPV 115

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 131
           LLAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 116 LLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
           WL VGLGNPG KY G RHN VGF ++D  A  +G         A   +  VGDAPV+LAK
Sbjct: 35  WLVVGLGNPGPKYAGNRHN-VGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAK 93

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P +YMNLSG     L+A+YK+P++R++V HD++ +P   L+L+  GG  GHNGL+S+  +
Sbjct: 94  PASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITAS 153

Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
             G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL +
Sbjct: 154 L-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEK 212

Query: 199 S 199
           +
Sbjct: 213 A 213

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
           WL VGLGNPG++Y  TRHN +GF  ++  AE  G++      K+   +G +    V L K
Sbjct: 2   WLIVGLGNPGERYARTRHN-IGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVK 60

Query: 79  PQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           PQTYMNLSG++   L  +YK+ P   +LV +DD+ LP   LRLR  G  G HNG++S++ 
Sbjct: 61  PQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVG 120

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
              G  EF RLRIGIG+PPGQMD   ++L +F       +   L    + +++++S+GLT
Sbjct: 121 QL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLT 179

Query: 198 ESARHFNTI 206
            +   +N +
Sbjct: 180 AAMNRYNPL 188

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.981	0.990	0.842	1e-101
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.995	0.817	1e-99
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.995	0.812	3e-99
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.995	0.808	7e-99
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	0.995	0.808	9e-99
358248836	218	uncharacterized protein LOC100808506 [Gl	0.990	0.995	0.793	1e-97
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.990	1.0	0.775	1e-94
255582564	217	peptidyl-tRNA hydrolase, putative [Ricin	0.990	1.0	0.761	1e-92
224052908	222	predicted protein [Populus trichocarpa]	0.981	0.968	0.769	1e-91
297808049	218	aminoacyl-tRNA hydrolase [Arabidopsis ly	0.990	0.995	0.747	2e-89

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/216 (84%), Positives = 192/216 (88%), Gaps = 1/216 (0%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++NRF RR FCTA  RPWLFVGLGNPGDKYKGTRHN VGFEMI+AFAESQGI M+TVHCK
Sbjct: 1   MLNRFSRRLFCTASPRPWLFVGLGNPGDKYKGTRHN-VGFEMINAFAESQGIPMDTVHCK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGVLRL 
Sbjct: 60  AIFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVVVFHDDMSLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 181
           H GGHG HNGLKSV+ +FRGNREF RLRIGIG+PPGQMDPKAFLLQKF+A ARERID AL
Sbjct: 120 HKGGHGNHNGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFSATARERIDAAL 179

Query: 182 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 217
           QEGV VLKLL SKGLTESAR FNT QKYKHIR+QNM
Sbjct: 180 QEGVGVLKLLSSKGLTESARCFNTEQKYKHIRVQNM 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 179/219 (81%), Positives = 193/219 (88%), Gaps = 2/219 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
           +HNGGHG HNGLKSV+ +FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHGYHNGLKSVIYHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTA 179

Query: 181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           LQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/219 (81%), Positives = 193/219 (88%), Gaps = 2/219 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHN VGFEMID FAES GI MN VHC
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHN-VGFEMIDVFAESVGIPMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMTLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
           +HNGGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTA 179

Query: 181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           LQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 177/219 (80%), Positives = 192/219 (87%), Gaps = 2/219 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
           +HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTA 179

Query: 181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           LQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 177/219 (80%), Positives = 192/219 (87%), Gaps = 2/219 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHN VGFEMID FAES GISMN VHC
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHN-VGFEMIDVFAESIGISMNRVHC 59

Query: 61  KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 120
           KA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL
Sbjct: 60  KAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRL 119

Query: 121 RHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
           +HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ERIDTA
Sbjct: 120 QHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTA 179

Query: 181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           LQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 180 LQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/218 (79%), Positives = 189/218 (86%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           +++R  RR FCT   RPWLFVGLGNPGDK+KGTRHN VGFEMIDAFAESQGI M+TVH K
Sbjct: 1   MLHRLSRRCFCTFTPRPWLFVGLGNPGDKFKGTRHN-VGFEMIDAFAESQGIPMDTVHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL 
Sbjct: 60  AIFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 181
             GGHG H GLKSV+ NFRGNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+RID AL
Sbjct: 120 DKGGHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEAL 179

Query: 182 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           QEG++ LKLLLSKGLTESA+ FN  QKYKH+R+QN+P 
Sbjct: 180 QEGIDALKLLLSKGLTESAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/218 (77%), Positives = 186/218 (85%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHN VGFEMIDAFAESQGI M+TVH K
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHN-VGFEMIDAFAESQGIPMDTVHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A  G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL 
Sbjct: 60  AISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLH 119

Query: 122 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 181
             GGHG H GLKSV+ +F+GNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+RID AL
Sbjct: 120 DKGGHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEAL 179

Query: 182 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
           QEGV+ LKLLLSKGL  SA+ FN  QKYKH+R+QN+P 
Sbjct: 180 QEGVDALKLLLSKGLAVSAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582564|ref|XP_002532065.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223528269|gb|EEF30320.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           ++N+  RR FCT  +RPWL VGLGNPGDKYKGTRHN VGFEMIDAFA+   I M+ +H K
Sbjct: 1   MLNKVCRRCFCTVASRPWLIVGLGNPGDKYKGTRHN-VGFEMIDAFAQLLQIPMDKLHSK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A FG+GFVG+A VLLAKPQTYMNLSGES GPLAAYYKLPLNRV+V HDDM LPCGVLRL+
Sbjct: 60  AIFGEGFVGEASVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVLHDDMDLPCGVLRLQ 119

Query: 122 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 181
             GGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA A++RIDTA+
Sbjct: 120 PKGGHGSHNGLKSVIHHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATAQKRIDTAI 179

Query: 182 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
            EG   LK +L KGLTE+AR FN  QKYKHIRLQ MP 
Sbjct: 180 PEGAAALKSILFKGLTETARCFNQEQKYKHIRLQTMPT 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/221 (76%), Positives = 185/221 (83%), Gaps = 6/221 (2%)

Query: 2   LINRFLRRGFCTAVA-----RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN 56
           ++NR  RR FCTA A      PWLFVGLGNPG+K+KGTRHN VGFEMIDAFA S GISMN
Sbjct: 1   MLNRVSRRCFCTAAAAPTTLSPWLFVGLGNPGEKFKGTRHN-VGFEMIDAFAGSLGISMN 59

Query: 57  TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCG 116
              CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCG
Sbjct: 60  IPLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVFHDDMELPCG 119

Query: 117 VLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 176
           VLRL+  GGHG H GLKSV+N+FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA ARER
Sbjct: 120 VLRLQEKGGHGCHRGLKSVINHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATARER 179

Query: 177 IDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 217
           ID AL EGV  L+ +L +GLT +AR FN  QKYK+IR + M
Sbjct: 180 IDAALPEGVVALRCILFEGLTRTARWFNQEQKYKYIRSETM 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808049|ref|XP_002871908.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata] gi|297317745|gb|EFH48167.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 163/218 (74%), Positives = 181/218 (83%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK 61
           +++   RR +CT+V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ K
Sbjct: 1   MLSMLSRRCYCTSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNFK 59

Query: 62  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 121
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 60  AIMGQGFVDDLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 119

Query: 122 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 181
             GGHG HNGLKSVMN+FRGNREFARLRIGIG PPGQMDPKAFLLQKF+  ARER+D AL
Sbjct: 120 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGNPPGQMDPKAFLLQKFSVPARERMDKAL 179

Query: 182 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 219
            EGV+ LKL+LSK   ES R FN  QKYKH+R   + A
Sbjct: 180 AEGVDALKLVLSKDFGESWRLFNVEQKYKHLRQHTIIA 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.963	0.963	0.704	1.7e-75
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.876	0.8	0.528	9.2e-52
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.853	0.649	0.521	3.1e-51
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.876	0.768	0.538	1.3e-50
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.835	0.978	0.370	1.5e-28
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.840	0.973	0.365	2.2e-27
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.840	0.989	0.365	3.5e-27
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.840	0.963	0.368	7.3e-27
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.821	0.932	0.374	1.1e-23
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.849	0.948	0.321	3.4e-22

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 150/213 (70%), Positives = 169/213 (79%)

Query:     2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHC 60
             +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN +GFEMID FAES GI MN V+ 
Sbjct:     1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHN-IGFEMIDVFAESVGIQMNLVNF 59

Query:    61 KATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXX 120
             KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV   
Sbjct:    60 KAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRL 119

Query:   121 XXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA 180
                         KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D A
Sbjct:   120 QEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKA 179

Query:   181 LQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 213
             L EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:   180 LAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 102/193 (52%), Positives = 130/193 (67%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG+KY GTRHN VGFEMID  A  +G+ MNT+  KA  G G + D P+LLA
Sbjct:    45 PWLIVGLGNPGNKYHGTRHN-VGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLA 103

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
             KPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM 
Sbjct:   104 KPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMG 163

Query:   138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
             +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  
Sbjct:   164 HLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFN 223

Query:   198 ESARHFNTIQKYK 210
             +    FN +QKYK
Sbjct:   224 QGISRFNLVQKYK 236

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 98/188 (52%), Positives = 136/188 (72%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG KY+GTRHN VGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LA
Sbjct:    94 PWLIVGLGNPGKKYQGTRHN-VGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLA 152

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
             KPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++
Sbjct:   153 KPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIID 212

Query:   138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
               +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  
Sbjct:   213 RLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFN 272

Query:   198 ESARHFNT 205
             +SA   NT
Sbjct:   273 KSATFVNT 280

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 104/193 (53%), Positives = 129/193 (66%)

Query:    18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
             PWL VGLGNPG KY GTRHN +GFEMID  A +  ISMNT+  KA  G G VG+ P+LL 
Sbjct:    55 PWLIVGLGNPGLKYYGTRHN-IGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLV 113

Query:    78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
             KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  
Sbjct:   114 KPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTE 173

Query:   138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
             +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G +
Sbjct:   174 HLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFS 233

Query:   198 ESARHFNTIQKYK 210
             +S   FN  QKYK
Sbjct:   234 DSISRFNLGQKYK 246

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 69/186 (37%), Positives = 104/186 (55%)

Query:    19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 78
             ++  GLGNPG +Y+ TRHN  GF ++D  A+  GI +     K+  G+G +    VLL K
Sbjct:     2 FIIAGLGNPGQEYENTRHN-AGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLK 60

Query:    79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
             PQTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++ 
Sbjct:    61 PQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISC 120

Query:   139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
               G+ E  RL+IGIGRP    D K ++LQ F    RE ++  L+   E + + L++G  +
Sbjct:   121 L-GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNK 178

Query:   199 SARHFN 204
             +   FN
Sbjct:   179 AMTDFN 184

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 69/189 (36%), Positives = 99/189 (52%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L +GLGNPG +Y G RHN VGF+ +  FA+   IS +   C +  G G + D  ++LAKP
Sbjct:     3 LIIGLGNPGKEYSGNRHN-VGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKP 61

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
             QTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ + 
Sbjct:    62 QTYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI 121

Query:   140 RGNREFARLRIGIGRPPGQMDPKAFL---LQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
              G +EF RL+IGIG+P  + +    +   L  F    RE +D A+    E L  LL+ GL
Sbjct:   122 -GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGL 180

Query:   197 TESARHFNT 205
               ++  FN+
Sbjct:   181 DTASNRFNS 189

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 68/186 (36%), Positives = 101/186 (54%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L VGLGNPG +Y+ TRHN +GF  ID  A+   IS+N    K  FG GFV    V+L KP
Sbjct:     3 LIVGLGNPGREYELTRHN-IGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKP 61

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
              TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++ 
Sbjct:    62 LTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL 121

Query:   140 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 199
              G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   + 
Sbjct:   122 -GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQI 180

Query:   200 ARHFNT 205
                FN+
Sbjct:   181 MNTFNS 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 70/190 (36%), Positives = 100/190 (52%)

Query:    15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
             +A P L VGLGNPG  Y  TRHN +GF + D  A   G      H +  A    G     
Sbjct:     1 MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKA-HKRSGAEVATGRSAGR 58

Query:    73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
              ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                
Sbjct:    59 SLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGL 118

Query:   133 KSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
             +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+
Sbjct:   119 RSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLI 177

Query:   193 SKGLTESARH 202
              +G+ E A++
Sbjct:   178 EQGM-EPAQN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 70/187 (37%), Positives = 98/187 (52%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
             L VGLGNPG KY  TRHN  GF ++D  A + G S+        FG+G      +LL KP
Sbjct:     5 LIVGLGNPGPKYLWTRHN-AGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKP 63

Query:    80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 139
             QTYMNLSG S      ++KLPL   +V HDD+ +P G                +S++   
Sbjct:    64 QTYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL 123

Query:   140 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA-LQEG-VEVLKLLLSKGLT 197
              G   F R+R+GIGRP    D   ++L  F+    E  D A L +G +++L+ LL+ GL 
Sbjct:   124 -GGAGFVRVRVGIGRPV-HGDVVNYVLTNFSQ--DEMADLAHLLDGTLDLLESLLTAGLP 179

Query:   198 ESARHFN 204
             ++   +N
Sbjct:   180 KTMSLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 61/190 (32%), Positives = 98/190 (51%)

Query:    20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
             L VGL NPG +Y  TRHN  G  +++  A    +++ N        G+  +    + +  
Sbjct:     7 LLVGLANPGPEYAKTRHN-AGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLI 65

Query:    79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
             P T+MNLSG++   LA +Y++    ++V HD++ LP GV               K  ++ 
Sbjct:    66 PTTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISK 125

Query:   139 FRGNREFARLRIGIGRPPGQMDPKA-FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
                N+EF RLR+GIG P G  D  A ++L K  A  +E +D A+ E V  L++L+  GLT
Sbjct:   126 LGNNKEFYRLRLGIGHP-GHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLT 184

Query:   198 ESARHFNTIQ 207
             ++    +T +
Sbjct:   185 KAQNRLHTFK 194

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.4193	0.8401	0.9892	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.7558	0.9634	0.9634	yes	no
Q2J5Z1	PTH_FRASC	3, ., 1, ., 1, ., 2, 9	0.3854	0.8401	0.9340	yes	no
B8G3X3	PTH_CHLAD	3, ., 1, ., 1, ., 2, 9	0.4074	0.8493	0.9893	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
C0ZHD7	PTH_BREBN	3, ., 1, ., 1, ., 2, 9	0.3915	0.8538	0.9894	yes	no
A4T6N5	PTH_MYCGI	3, ., 1, ., 1, ., 2, 9	0.4090	0.8675	0.9895	yes	no
B2TI10	PTH_CLOBB	3, ., 1, ., 1, ., 2, 9	0.3608	0.8675	0.9947	yes	no
Q6MJR3	PTH_BDEBA	3, ., 1, ., 1, ., 2, 9	0.4042	0.8447	0.9893	yes	no
B9LE93	PTH_CHLSY	3, ., 1, ., 1, ., 2, 9	0.3968	0.8493	0.9893	yes	no
A1TEG1	PTH_MYCVP	3, ., 1, ., 1, ., 2, 9	0.4213	0.8630	0.9843	yes	no
P37470	PTH_BACSU	3, ., 1, ., 1, ., 2, 9	0.4324	0.8356	0.9734	yes	no
Q0RCD6	PTH_FRAAA	3, ., 1, ., 1, ., 2, 9	0.3756	0.8538	0.9492	yes	no
B1KTE2	PTH_CLOBM	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.4010	0.8356	0.9734	yes	no
Q3Z8W2	PTH_DEHE1	3, ., 1, ., 1, ., 2, 9	0.4126	0.8401	0.9735	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.4193	0.8401	0.9892	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.4139	0.8356	0.9786	yes	no
Q65PG8	PTH_BACLD	3, ., 1, ., 1, ., 2, 9	0.4216	0.8356	0.9734	yes	no
Q1B425	PTH_MYCSS	3, ., 1, ., 1, ., 2, 9	0.4184	0.8173	0.9322	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
A1UL23	PTH_MYCSK	3, ., 1, ., 1, ., 2, 9	0.4184	0.8173	0.9322	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.4619	0.8310	0.9680	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.3862	0.8447	0.9788	yes	no
A9WBS1	PTH_CHLAA	3, ., 1, ., 1, ., 2, 9	0.3968	0.8493	0.9893	yes	no
A9KR32	PTH_CLOPH	3, ., 1, ., 1, ., 2, 9	0.3924	0.8401	0.9633	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.3978	0.8401	0.9892	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.4010	0.8356	0.9734	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.3809	0.8447	0.9788	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.4354	0.8401	0.9892	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.5803	0.8767	0.7413	yes	no
Q47SW2	PTH_THEFY	3, ., 1, ., 1, ., 2, 9	0.4309	0.8173	0.8403	yes	no
B2UXS9	PTH_CLOBA	3, ., 1, ., 1, ., 2, 9	0.3608	0.8675	0.9947	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.4193	0.8401	0.9892	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.4032	0.8356	0.9734	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.4108	0.8356	0.9838	yes	no
Q899I4	PTH_CLOTE	3, ., 1, ., 1, ., 2, 9	0.4010	0.8356	0.9734	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.4193	0.8401	0.9892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.979
3rd Layer	3.1.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024798001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (217 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018977001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)	•						•		0.795
	GSVIVG00015830001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)	•						•		0.791
	GSVIVG00025769001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (365 aa)	•			•			•		0.719
	GSVIVG00020546001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)							•		0.670
	GSVIVG00009701001	SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (251 aa)	•								0.629
	GSVIVG00017183001	RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)							•		0.609
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)	•			•					0.602
	GSVIVG00007283001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)	•						•		0.594
	GSVIVG00002517001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (258 aa)	•								0.575
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•			•					0.544

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-113
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	2e-79
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	3e-75
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	4e-74
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	1e-70
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	2e-57

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  321 bits (825), Expect = e-113
 Identities = 124/192 (64%), Positives = 152/192 (79%), Gaps = 1/192 (0%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLL 76
            PWL  GLGNPG+KYKGTRHN VGFEM+D  AE++GI+MNT+  K+  G G +GD PVLL
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHN-VGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLL 59

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
           AKPQTYMN SGES GPLAAYYK+PL  +LV +DDM LP GVLRL+  GGHG HNGL+SV+
Sbjct: 60  AKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVI 119

Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
            +  G+REF RL IGIG PPG+MDP+AFLLQKF++  RE+IDTAL++GV+ ++ L+ KG 
Sbjct: 120 EHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGF 179

Query: 197 TESARHFNTIQK 208
             SA  FN +QK
Sbjct: 180 NGSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  234 bits (600), Expect = 2e-79
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 79
           L VGLGNPG KY+ TRHN VGF ++DA AE  G+S      K   G+G +G   VLL KP
Sbjct: 1   LIVGLGNPGPKYENTRHN-VGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKP 59

Query: 80  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 139
           QTYMNLSGE+   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ + 
Sbjct: 60  QTYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL 119

Query: 140 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
            G  +F RLRIGIGRPP +MD   ++L KF+   RE ++ A+++  + L+ +L
Sbjct: 120 -GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  224 bits (574), Expect = 3e-75
 Identities = 85/180 (47%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG KY+ TRHN VGF +ID  AE  G+S+      K    +G +    V+L K
Sbjct: 1   LIVGLGNPGPKYENTRHN-VGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLK 59

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           PQTYMNLSGE+   +A +YK+P   +LV HDD+ LP G LRL+  GG GGHNGLKS++ +
Sbjct: 60  PQTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQH 119

Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
             G  +F RLRIGIGRPP + D   ++L KF+    E +D A+++  + L+ L+  G  +
Sbjct: 120 L-GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDK 178

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  221 bits (567), Expect = 4e-74
 Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 4/189 (2%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLL 76
             L VGLGNPG +Y  TRHN +GF ++D  A   G S+      K    +G +    V+L
Sbjct: 2   MKLIVGLGNPGPEYANTRHN-IGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVIL 60

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
            KPQTYMNLSG++   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++
Sbjct: 61  LKPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSII 120

Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
            +  G ++F RLRIGIGRP  +     ++L KF+   +E +D A+ +  + ++LLL  G 
Sbjct: 121 AHL-GTQDFWRLRIGIGRPDKK-KVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGF 178

Query: 197 TESARHFNT 205
            ++   FN+
Sbjct: 179 EKAMNKFNS 187

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  213 bits (544), Expect = 1e-70
 Identities = 80/189 (42%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGIS-MNTVHCKATFGQGFVGDAPVLL 76
             L VGLGNPG KY  TRHN VGF ++D  A    +S            +G +    V+L
Sbjct: 2   MKLIVGLGNPGKKYAKTRHN-VGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVIL 60

Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM 136
            KP TYMNLSG++ G LA++YK+    +LV HD++ LP G +RL+  GG GGHNGLKS++
Sbjct: 61  LKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSII 120

Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
            +  G   F RLRIGIGRP    D   ++L KF+   RE +D A+ +  + L+LLL    
Sbjct: 121 AHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGDF 179

Query: 197 TESARHFNT 205
            ++    N 
Sbjct: 180 EKAMNKLNA 188

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  179 bits (456), Expect = 2e-57
 Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAK 78
           L VGLGNPG KY GTRHN  GF ++D  A   G+S+ T         +G +    V+L K
Sbjct: 3   LIVGLGNPGKKYAGTRHN-AGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLK 61

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P TYMNLSGE+   LA++Y++    +LV HD++ LP G +RL+  GG GGHNGLKS++++
Sbjct: 62  PLTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISH 121

Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
             G   F RLRIGIG P G      F+L KF       ++ AL + VE L++  S+G
Sbjct: 122 L-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEG 177

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
TIGR00130	153	frhD coenzyme F420-reducing hydrogenase delta subu	93.08
PRK11544	156	hycI hydrogenase 3 maturation protease; Provisiona	89.76
PRK12362	318	germination protease; Provisional	89.29
TIGR00072	145	hydrog_prot hydrogenase maturation protease. HycI	88.79
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	88.43
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	88.38
TIGR00142	146	hycI hydrogenase maturation protease HycI. Hydroge	86.56
cd06062	146	H2MP_MemB-H2up Endopeptidases belonging to membran	85.14
cd06064	150	H2MP_F420-Reduc Endopeptidases belonging to F420-r	82.26

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-78  Score=512.25  Aligned_cols=187  Identities=43%  Similarity=0.772  Sum_probs=181.5

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCC-CccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~-~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      ++|||||||||++|+.|||| ||||++|.||++++.++ +.++|.+.++++.+.+++|+|+||+||||+||++|.++++|
T Consensus         2 ~kLIVGLGNPG~~Y~~TRHN-vGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           2 MKLIVGLGNPGKKYAKTRHN-VGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             cEEEEECCCCchhhcccchh-HHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            78999999999999999999 99999999999999998 55789999999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  176 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~  176 (219)
                      |++++++++|||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+++|++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          177 IDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       177 l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      +++++++|+++++.+++.+++++||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999974

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=9.5e-78  Score=511.69  Aligned_cols=190  Identities=65%  Similarity=1.131  Sum_probs=181.7

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      .|+|||||||||++|++|||| |||+++|+||+++++++++.++.+.+++..+.+++++|+||+||||+||+||+++++|
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHN-iGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~   79 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHN-VGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAY   79 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchh-HHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHH
Confidence            478999999999999999999 9999999999999998766788899999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  176 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~  176 (219)
                      |++++++++|||||||||+|++|+|.+||+|||||||||+++|+||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        80 yki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~  159 (191)
T cd02406          80 YKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQ  159 (191)
T ss_pred             hCCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999996578999999999999776789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHhhhchh
Q 027742          177 IDTALQEGVEVLKLLLSKGLTESARHFNTIQ  207 (219)
Q Consensus       177 l~~~i~~a~~~l~~~i~~~~~~amn~~n~~~  207 (219)
                      ++++++.|+++++.|+.++++++||+||+.+
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~~n~~n~~~  190 (191)
T cd02406         160 IDTALEQGVDAVRTLVLKGFNGSAERFNLVQ  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            9999999999999999999999999999653

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=9.1e-76  Score=498.55  Aligned_cols=186  Identities=44%  Similarity=0.771  Sum_probs=178.2

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      |+|||||||||++|++|||| ||||++|+||++++.++++ .++.+.+++..+.+++++|+||+||||+||++|+++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   79 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHN-AGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASF   79 (188)
T ss_pred             CEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            68999999999999999999 9999999999999998763 567788888889999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  176 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~  176 (219)
                      |+|+++++||||||||||+|++|+|++||+|||||||||+++| ||++|+|||||||||+++.++++|||++|+++|++.
T Consensus        80 ~~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~  158 (188)
T TIGR00447        80 YRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPL  158 (188)
T ss_pred             hCCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 689999999999999876789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-HHHHHHhhhc
Q 027742          177 IDTALQEGVEVLKLLLSKG-LTESARHFNT  205 (219)
Q Consensus       177 l~~~i~~a~~~l~~~i~~~-~~~amn~~n~  205 (219)
                      ++++++.++++++.|++++ ++++||+||+
T Consensus       159 l~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       159 LEKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            9999999999999999999 9999999985

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=5e-74  Score=488.20  Aligned_cols=186  Identities=44%  Similarity=0.801  Sum_probs=177.4

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      |||||||||||++|++|||| |||+++|.||++++..+. ..++.+.+++..+.+.+++|+||+||||+||++|.+++++
T Consensus         2 ~~LivGLGNPG~~Y~~TRHN-vGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          2 MKLIVGLGNPGPEYANTRHN-IGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             cEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            79999999999999999999 999999999999887664 4567889999999889999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  176 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~  176 (219)
                      |+|++++++|||||+|+|+|++|+|.+||+|||||||||+++| ||++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 6889999999999997 5679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          177 IDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       177 l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      ++++++.|+++++.|++++++++||+||+.
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=4.3e-73  Score=479.98  Aligned_cols=183  Identities=44%  Similarity=0.844  Sum_probs=163.2

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccc-cceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   98 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k-~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k   98 (219)
                      |||||||||++|++|||| |||+++|+||++++.++.+.+ +.+.++...+.+.+++|+||+||||+||++|++++++|+
T Consensus         1 LivGLGNPG~~Y~~TRHN-vG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~   79 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHN-VGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYK   79 (184)
T ss_dssp             EEEE---SSTTTTTSGGG-HHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT
T ss_pred             CEEEcCCCChhhcCCCcC-chHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhC
Confidence            799999999999999999 999999999999999886654 788888999999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHHH
Q 027742           99 LPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERID  178 (219)
Q Consensus        99 i~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~l~  178 (219)
                      ++++++||||||+|+|+|++|+|.+||+|||||||||+++| +|++|+|||||||||+...++++|||++|+++|++.++
T Consensus        80 i~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~  158 (184)
T PF01195_consen   80 IPPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLD  158 (184)
T ss_dssp             --GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHH
T ss_pred             CCcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999 68999999999999987778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHhhh
Q 027742          179 TALQEGVEVLKLLLSKGLTESARHFN  204 (219)
Q Consensus       179 ~~i~~a~~~l~~~i~~~~~~amn~~n  204 (219)
                      ++++.|+++++.|+++++++|||+||
T Consensus       159 ~~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  159 KVIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            99999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=1.5e-72  Score=472.69  Aligned_cols=171  Identities=51%  Similarity=0.938  Sum_probs=164.6

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcCC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   99 (219)
                      |||||||||++|++|||| ||||++|+||++++.++.+.++.+.+++..+.+++++|+||+||||+||++|.++++||++
T Consensus         1 LIvGLGNPG~~Y~~TRHN-vGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i   79 (171)
T cd00462           1 LIVGLGNPGPKYENTRHN-VGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKI   79 (171)
T ss_pred             CEEEECCCCcccCcCchH-HHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCC
Confidence            699999999999999999 9999999999999998877777899999999999999999999999999999999999999


Q ss_pred             CCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHHHH
Q 027742          100 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDT  179 (219)
Q Consensus       100 ~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~l~~  179 (219)
                      +++++||||||||||+|++|+|++||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.+++
T Consensus        80 ~~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~  158 (171)
T cd00462          80 PPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEE  158 (171)
T ss_pred             ChhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 689999999999999877799999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027742          180 ALQEGVEVLKLLL  192 (219)
Q Consensus       180 ~i~~a~~~l~~~i  192 (219)
                      +++.|+++++.|+
T Consensus       159 ~~~~~~~~~~~~~  171 (171)
T cd00462         159 AIEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-56  Score=378.69  Aligned_cols=183  Identities=56%  Similarity=0.993  Sum_probs=164.8

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   97 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   97 (219)
                      +|+|+||||||++|..|||| |||.++|.||++.+++..+.+.++..+-..+++..+++++|++|||.||++|.+++..|
T Consensus        39 ~wli~GLGNPg~~y~gTRHn-vG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y  117 (224)
T KOG2255|consen   39 PWLIVGLGNPGSKYVGTRHN-VGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALY  117 (224)
T ss_pred             ceEEEecCCCcccccccchh-hHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhh
Confidence            58999999999999999999 99999999999999987766666777778899999999999999999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH-H
Q 027742           98 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE-R  176 (219)
Q Consensus        98 ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~-~  176 (219)
                      +++.++++||||||++|+|++|+|++||++||||+||++++++|...|+||+||||||++++|+.+|||++|++.|++ .
T Consensus       118 ~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~  197 (224)
T KOG2255|consen  118 KIPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKEL  197 (224)
T ss_pred             cchheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHH
Confidence            999999999999999999999999999999999999999999877899999999999999999999999999999988 4


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742          177 IDTALQEGVEVLKLLLSKGLTESARHFNT  205 (219)
Q Consensus       177 l~~~i~~a~~~l~~~i~~~~~~amn~~n~  205 (219)
                      |+..    .+.+++++.+++..-.++||-
T Consensus       198 Let~----l~~~~~lil~~l~~~is~~~l  222 (224)
T KOG2255|consen  198 LETL----LEHVKTLILQGLQQSISRFNL  222 (224)
T ss_pred             HHHH----HhhhHHHHHHHHHHhcccCcC
Confidence            4444    444555555666666666663

>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit)

Probab=93.08  E-value=4.1  Score=33.20  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHH-cCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAES-QGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~-~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      ...+|+|+|||-..=    == +|..++++|+++ +..+                 ..+.+      ++........+..
T Consensus         3 ~~ilVlGiGN~l~gD----DG-vG~~v~~~L~~~~~~~~-----------------~~v~v------id~gt~~~~~l~~   54 (153)
T TIGR00130         3 HEILVVGCGNILFGD----DG-FGPAVIEYLKENGVEKP-----------------DNVCL------IDAGTGAPHFVFT   54 (153)
T ss_pred             ceEEEEEeCcccccc----Cc-HhHHHHHHHHHhCCCCC-----------------CCeEE------EECCCcHHHHHHH
Confidence            346899999995321    23 999999999863 2111                 01111      2211111111112


Q ss_pred             hcCCCCCceEEEeec--CCCCCceEEEec------CCC-CCCCCchhhHHHhhcCCCCccEEEE-eecCCCCCCCccccc
Q 027742           96 YYKLPLNRVLVFHDD--MGLPCGVLRLRH------NGG-HGGHNGLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFL  165 (219)
Q Consensus        96 ~~ki~~~~ilVihDD--ldlp~G~irlk~------gGs-~gGHNGLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yV  165 (219)
                      +..+...+.+||-|=  .+.++|+++.-.      ..+ +..+-|+..+++.+. ..  .++.| ||- |.. -+..+|=
T Consensus        55 ~~~~~~~d~vIivDA~~~~~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~-~~--~~~~iiGi~-p~~-~~~~~~~  129 (153)
T TIGR00130        55 LIPQSKWKKIIVVDIADFGAEPGTLRVLNVDELPNGRYMDAHGWSLAYPLHDLE-ER--IDIRVVGCQ-PKY-VSQPDVD  129 (153)
T ss_pred             HhhhcCCCEEEEEEccCCCcCCCEEEEEchHHcCCCCCCCCccCCHHHHHHHhc-CC--CCEEEEEEE-EeE-ecCCCCC
Confidence            212334566777785  578999998742      212 344459999998773 22  45555 553 321 1111222


Q ss_pred             cCcCCHHHHHHHHHHHHH
Q 027742          166 LQKFNAIARERIDTALQE  183 (219)
Q Consensus       166 L~~F~~~E~~~l~~~i~~  183 (219)
                       -.+|++=++.++++++.
T Consensus       130 -~~LS~~v~~a~~~~~~~  146 (153)
T TIGR00130       130 -IGLTEEVNKAIPRAVEI  146 (153)
T ss_pred             -CCCCHHHHHHHHHHHHH
Confidence             25665555554444333

FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.

>PRK11544 hycI hydrogenase 3 maturation protease; Provisional

Probab=89.76  E-value=7.2  Score=32.03  Aligned_cols=134  Identities=17%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             eEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcC
Q 027742           19 WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   98 (219)
Q Consensus        19 ~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k   98 (219)
                      .+|+|+|||-..=.     .+|..++++|.+.. .  .                .+.++.-.|    .|.-+-.+++.+ 
T Consensus         3 ~lVlGiGN~L~gDD-----GvG~~v~~~L~~~~-~--~----------------~v~vid~gt----~~~~~~~~i~~~-   53 (156)
T PRK11544          3 DVVLTVGNSMMGDD-----GAGPLLAEKLAAAP-K--G----------------GWVVIDGGS----APENDIVAIREL-   53 (156)
T ss_pred             EEEEEeCccccccC-----cHHHHHHHHHhccC-C--C----------------CeEEEECCC----CHHHHHHHHHhc-
Confidence            48999999964322     29999999997642 1  0                111222222    122222222211 


Q ss_pred             CCCCceEEEee--cCCCCCceEEEecCC------CCCCCC-chhhHHHhhcCCCCccEEEE-eecCCCCCCCccccccCc
Q 027742           99 LPLNRVLVFHD--DMGLPCGVLRLRHNG------GHGGHN-GLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFLLQK  168 (219)
Q Consensus        99 i~~~~ilVihD--Dldlp~G~irlk~gG------s~gGHN-GLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yVL~~  168 (219)
                       .+ +.+||.|  +.+.++|+++.-...      +...|. ||..++..+.+  ..+++.+ ||= |.   ++ +| =..
T Consensus        54 -~~-d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~  123 (156)
T PRK11544         54 -RP-ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYP  123 (156)
T ss_pred             -CC-CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCC
Confidence             22 5566667  456799999873211      123444 78888888743  2345544 442 32   22 22 235


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027742          169 FNAIARERIDTALQEGVEVLKLLLSKG  195 (219)
Q Consensus       169 F~~~E~~~l~~~i~~a~~~l~~~i~~~  195 (219)
                      .|++=+    +.++++++.++.|..++
T Consensus       124 LS~~v~----~av~~~~~~l~~~~~~~  146 (156)
T PRK11544        124 MTQPVK----DAVETVYQRLEGWEGNG  146 (156)
T ss_pred             CCHHHH----HHHHHHHHHHHHhhccC
Confidence            555443    44556667777776543

>PRK12362 germination protease; Provisional

Probab=89.29  E-value=12  Score=34.84  Aligned_cols=128  Identities=19%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             HHHHHHhccCCCCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECC-eeEEEEeC----
Q 027742            5 RFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-APVLLAKP----   79 (219)
Q Consensus         5 ~~~~~~~~~~~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~-~~v~L~KP----   79 (219)
                      +.|+..+........|||||||.    .-|--. .|-.+++.|.-....       ...+++..-.+ .+|.-+-|    
T Consensus        87 ~~L~~ll~~~~~~~iLVvGLGN~----~vTpDa-LGP~Vv~~l~vTrhl-------~~~~~~~~~~~~~pV~AiaPGVmg  154 (318)
T PRK12362         87 KELKKLINLDKEMTVLVVGLGNW----NVTPDA-LGPKVVSKLMVTRHL-------KEYAPEEIDEGIRPVCAIAPGVLG  154 (318)
T ss_pred             HHHHHHhCCCCCCcEEEEEcCCC----CcCccc-cchhhhhhhhhhhhh-------hhhcCchhcCCCCcceEecCCccc
Confidence            34455543234567899999996    358889 999999988643111       01111111111 23444444    


Q ss_pred             CCcccccchhHHHHHHhcCCCCCceEEEeecCC----CCCc-eEEEecCC---CCCCCCchhhHH-HhhcCCCCccEEEE
Q 027742           80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMG----LPCG-VLRLRHNG---GHGGHNGLKSVM-NNFRGNREFARLRI  150 (219)
Q Consensus        80 ~TyMN~SG~aV~~~~~~~ki~~~~ilVihDDld----lp~G-~irlk~gG---s~gGHNGLkSIi-~~L~gt~~f~RlrI  150 (219)
                      +|=||. ++.++.+.+.++   .+++|.-|-+-    --+| +|.+...|   |+|=.|==+.|. +.| |   .+=+.|
T Consensus       155 ~TGiet-~Eii~gIv~k~k---pd~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~etL-G---VPVIAI  226 (318)
T PRK12362        155 ITGIET-AEIIKGVVEKIK---PDLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINEETL-G---VPVIAI  226 (318)
T ss_pred             ccchhH-HHHHHHHHHhcC---CCEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCHHHc-C---CCEEEE
Confidence            566776 566777777665   36777778775    2467 88888776   444344333443 344 3   566666


Q ss_pred             ee
Q 027742          151 GI  152 (219)
Q Consensus       151 GI  152 (219)
                      ||
T Consensus       227 GV  228 (318)
T PRK12362        227 GV  228 (318)
T ss_pred             cC
Confidence            66

>TIGR00072 hydrog_prot hydrogenase maturation protease

Probab=88.79  E-value=11  Score=30.27  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcCC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   99 (219)
                      ||+|+|||-..=.     .+|..++++|++++....                 .+-++.-       |...-.++.+.. 
T Consensus         1 lViGiGN~l~~DD-----g~G~~v~~~L~~~~~~~~-----------------~v~~id~-------g~~~~~l~~~l~-   50 (145)
T TIGR00072         1 LVLGIGNILRGDD-----GFGPRVAERLEERYEFPP-----------------GVEVLDG-------GTLGLELLDAIE-   50 (145)
T ss_pred             CEEEECchhcccC-----cHHHHHHHHHHHhcCCCC-----------------CeEEEEC-------CCCHHHHHHHHh-
Confidence            5899999943211     399999999988653210                 0111111       111123333332 


Q ss_pred             CCCceEEEeecC--CCCCceEEEec--------CCC-CCCCCchhhHHHhhcCCCCcc-EEEE-eecCCCCCCCcccccc
Q 027742          100 PLNRVLVFHDDM--GLPCGVLRLRH--------NGG-HGGHNGLKSVMNNFRGNREFA-RLRI-GIGRPPGQMDPKAFLL  166 (219)
Q Consensus       100 ~~~~ilVihDDl--dlp~G~irlk~--------gGs-~gGHNGLkSIi~~L~gt~~f~-RlrI-GIGrP~~~~~v~~yVL  166 (219)
                       ..+.+|+.|=.  +.++|+++.-.        .++ +..+-|+..+++.+.-....+ ++.+ ||= |.   ++ +|- 
T Consensus        51 -~~d~viiVDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~g~~p~~~~lvgi~-~~---~~-~~g-  123 (145)
T TIGR00072        51 -GADRVIVVDAVDSGAEPGTVRRLPGEDLPAFLGGKLSTHQLGLSEVLALLELLGALPPEVVLLGIQ-PE---SL-EFG-  123 (145)
T ss_pred             -CCCEEEEEEccCCCcCCceEEEEchhhccccccCCCCcCcCCHHHHHHHHHHcCCCCCeEEEEEEE-ee---ec-ccC-
Confidence             24566677865  55999988632        123 333448888887663112333 4444 552 21   22 222 


Q ss_pred             CcCCHHHHHHHHHHHH
Q 027742          167 QKFNAIARERIDTALQ  182 (219)
Q Consensus       167 ~~F~~~E~~~l~~~i~  182 (219)
                      ..+|++=++.++++++
T Consensus       124 ~~LS~~v~~~~~~~~~  139 (145)
T TIGR00072       124 LGLSPEVAAAVPAAVE  139 (145)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            3566655555444433

HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=88.43  E-value=14  Score=30.92  Aligned_cols=140  Identities=17%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCC-cccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT-YMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~T-yMN~SG~aV~~~~~   95 (219)
                      .+.+|+|+|||=..    -=- +|-.++++|.+++...-                 +|-++.-.| -+|+.+        
T Consensus         2 ~~ilIlG~GN~L~~----DDG-~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~--------   51 (160)
T COG0680           2 MRILILGVGNILMG----DDG-FGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLG--------   51 (160)
T ss_pred             CeEEEEeeCCcccc----cCc-ccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHH--------
Confidence            35789999999432    334 99999999998753210                 122222211 133322        


Q ss_pred             hcCCCCCceEEEeecCCC--CCceEEEec------CCCCC---CCC-chhhHHHhhcCCCCccEEEEeecCCCCCCCccc
Q 027742           96 YYKLPLNRVLVFHDDMGL--PCGVLRLRH------NGGHG---GHN-GLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA  163 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldl--p~G~irlk~------gGs~g---GHN-GLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~  163 (219)
                        .+...+-++|.|=++.  .+|++++-.      ...+.   .|+ ++..+++.+.-..++...-+|+.-|+.  ...+
T Consensus        52 --~l~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~  127 (160)
T COG0680          52 --LLAGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE  127 (160)
T ss_pred             --HhcCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc
Confidence              1233344778886555  599998643      23343   565 688888777433456778888886542  2112


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 027742          164 FLLQKFNAIARERIDTALQEGVEVLKLL  191 (219)
Q Consensus       164 yVL~~F~~~E~~~l~~~i~~a~~~l~~~  191 (219)
                       +-..+|++=++.++.+++.+.+.++.+
T Consensus       128 -~~~~lS~ev~~a~~~av~~i~~~l~~~  154 (160)
T COG0680         128 -FGGGLSPEVEEAVDKAVERILEELREW  154 (160)
T ss_pred             -cccccCHHHHHHHHHHHHHHHHHHHhh
Confidence             225666666666666666666655543

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=88.38  E-value=12  Score=30.05  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcCC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   99 (219)
                      ||+|+|||=..=.    = +|..++++|++ .+                     +-++.-       |.....++.++  
T Consensus         1 lVlGiGN~l~~DD----g-~G~~v~~~L~~-~~---------------------v~vi~~-------g~~~~~ll~~i--   44 (140)
T cd06070           1 LIIGVGNRLYGDD----G-FGSCLAEALEQ-CG---------------------APVFDG-------GLDGFGLLSHL--   44 (140)
T ss_pred             CEEEECchhcccC----c-HHHHHHHHHhh-CC---------------------CEEEEC-------CCcHHHHHHHH--
Confidence            6899999953222    2 99999999976 11                     111111       22223344433  


Q ss_pred             CCCceEEEeecCC--CCCceEEEecC---------CCCCCCC-chhhHHHhh
Q 027742          100 PLNRVLVFHDDMG--LPCGVLRLRHN---------GGHGGHN-GLKSVMNNF  139 (219)
Q Consensus       100 ~~~~ilVihDDld--lp~G~irlk~g---------Gs~gGHN-GLkSIi~~L  139 (219)
                      ...+.+||.|=++  .++|.++++..         .+...|+ |+.++.+.+
T Consensus        45 ~~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~   96 (140)
T cd06070          45 ENYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL   96 (140)
T ss_pred             cCCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence            2356666777654  68998888543         2224566 999987665

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

>TIGR00142 hycI hydrogenase maturation protease HycI

Probab=86.56  E-value=15  Score=29.53  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcCC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   99 (219)
                      +|+|+|||-..=.     .+|..++++|.+.+..   .               .+.++.-.|    .|.-.-.+++.++ 
T Consensus         2 lVlGiGN~l~~DD-----G~G~~v~~~L~~~~~~---~---------------~v~v~d~gt----~~~~~~~~~~~~~-   53 (146)
T TIGR00142         2 VLLCVGNELMGDD-----GAGPYLAEKCAAAPKE---E---------------NWVVINAGT----VPENFTVAIRELR-   53 (146)
T ss_pred             EEEEeCccccccC-----cHHHHHHHHHHhccCC---C---------------CEEEEECCC----ChHHHHHHHHhcC-
Confidence            6999999964322     2999999999865311   0               122222222    1222222222222 


Q ss_pred             CCCceEEEeecC--CCCCceEEEecC-----CCCCCCC-chhhHHHhhcCCCCccEEEE-eecCCCCCCCccccccCcCC
Q 027742          100 PLNRVLVFHDDM--GLPCGVLRLRHN-----GGHGGHN-GLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFLLQKFN  170 (219)
Q Consensus       100 ~~~~ilVihDDl--dlp~G~irlk~g-----Gs~gGHN-GLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yVL~~F~  170 (219)
                        .+.++|.|-.  +.++|+++.-..     .+..-|. |+..+++.+.+ .--.++.+ ||- |.   ++ +|- ...|
T Consensus        54 --~d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS  124 (146)
T TIGR00142        54 --PTHILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMS  124 (146)
T ss_pred             --CCEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCC
Confidence              3566666764  569999887432     1223454 99998877732 21235554 553 32   23 333 4666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027742          171 AIARERIDTALQEGVEVLKLLL  192 (219)
Q Consensus       171 ~~E~~~l~~~i~~a~~~l~~~i  192 (219)
                      ++=++.++    ++++.+..++
T Consensus       125 ~~v~~a~~----~~~~~i~~~i  142 (146)
T TIGR00142       125 QPVKDAVE----TLYQRLIGWE  142 (146)
T ss_pred             HHHHHHHH----HHHHHHHHHH
Confidence            65555444    4444444444

Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.

>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group

Probab=85.14  E-value=18  Score=29.06  Aligned_cols=127  Identities=20%  Similarity=0.241  Sum_probs=67.7

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhcCC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   99 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   99 (219)
                      +|+|+|||-..=.     .+|..++++|++.+..+..                 +-+      ++. |.....++..+. 
T Consensus         2 lV~GiGN~l~gDD-----G~G~~va~~L~~~~~~~~~-----------------v~v------i~~-~~~~~~l~~~l~-   51 (146)
T cd06062           2 LVLGIGNILLADE-----GIGVHAVERLEENYSFPEN-----------------VEL------IDG-GTLGLELLPYIE-   51 (146)
T ss_pred             EEEEECccccccC-----cHHHHHHHHHHHhcCCCCC-----------------eEE------EEC-CCCHHHHHHHHh-
Confidence            7999999953211     3999999999887533210                 111      111 222223333322 


Q ss_pred             CCCceEEEeec--CCCCCceEEEecC---------CCCCCCCchhhHHHhhc--CCCCccEEEE-eecCCCCCCCccccc
Q 027742          100 PLNRVLVFHDD--MGLPCGVLRLRHN---------GGHGGHNGLKSVMNNFR--GNREFARLRI-GIGRPPGQMDPKAFL  165 (219)
Q Consensus       100 ~~~~ilVihDD--ldlp~G~irlk~g---------Gs~gGHNGLkSIi~~L~--gt~~f~RlrI-GIGrP~~~~~v~~yV  165 (219)
                       ..+.+|+.|=  .+.++|+++.-..         ..+..+-|+..+++.+.  +. .-.++.| ||= |.   ++ +|-
T Consensus        52 -~~d~viiVDA~~~g~~pG~i~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~~~-~~~~v~ivgie-~~---~~-~~g  124 (146)
T cd06062          52 -EADRLIIVDAVDAGGPPGTVYRFEGEDVPAFLSAKLSAHQVGLLEVLALAELLGD-LPPEIVLIGVQ-PE---SI-EWG  124 (146)
T ss_pred             -cCCEEEEEEcccCCCCCCeEEEEechhccccccCCcCcccCCHHHHHHHHHHcCC-CCCeEEEEEEE-Ee---ec-cCC
Confidence             3477777786  4779999876421         22445556888776642  11 1124443 442 21   22 222


Q ss_pred             cCcCCHHHHHHHHHHHHHH
Q 027742          166 LQKFNAIARERIDTALQEG  184 (219)
Q Consensus       166 L~~F~~~E~~~l~~~i~~a  184 (219)
                       ..+|++=++.++++++.+
T Consensus       125 -~~LS~~v~~av~~~~~~i  142 (146)
T cd06062         125 -LELSPEVAAALPTAIEAV  142 (146)
T ss_pred             -CCCCHHHHHHHHHHHHHH
Confidence             367766666655554443

These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.

>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group

Probab=82.26  E-value=25  Score=28.41  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             EEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHH-HHhcC
Q 027742           20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPL-AAYYK   98 (219)
Q Consensus        20 LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~-~~~~k   98 (219)
                      ||+|+|||-..=    == +|..++++|++++...                 ..+.++.       .|.....+ ..+..
T Consensus         1 lViGiGN~l~gD----Dg-vG~~va~~l~~~~~~~-----------------~~v~vid-------~g~~~~~~~~~~~~   51 (150)
T cd06064           1 LVVGCGNILFGD----DG-FGPAVIEELEKLELLP-----------------DNVQVID-------AGTGAPHLLFTLLD   51 (150)
T ss_pred             CEEEECCccccc----Cc-HHHHHHHHHHhccCCC-----------------CCEEEEE-------CCCcHHHHHHHHHh
Confidence            689999996331    22 9999999998754211                 0122222       23322121 11111


Q ss_pred             -CCCCceEEEeecC--CCCCceEEEecC---------CCCCCCCchhhHHHhhc
Q 027742           99 -LPLNRVLVFHDDM--GLPCGVLRLRHN---------GGHGGHNGLKSVMNNFR  140 (219)
Q Consensus        99 -i~~~~ilVihDDl--dlp~G~irlk~g---------Gs~gGHNGLkSIi~~L~  140 (219)
                       ....+.+||.|=+  +.++|+++....         ..+-.+-|+..+++.+.
T Consensus        52 ~~~~~d~viivDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~  105 (150)
T cd06064          52 EESKPKKIIIVDAIDFGLEPGTLKKISVDELPPGKYYDFDAHSWPLADPLHELK  105 (150)
T ss_pred             ccCCCCEEEEEEecCCCCCCCeEEEEehhhcccccCCCcCCCcCCHHHHHHHHH
Confidence             1225677778874  779999887432         12456679999998774

These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		5e-57
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		1e-55
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		3e-55
2lgj_A	191	Solution Structure Of Mspth Length = 191		4e-30
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		6e-29
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-27
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		2e-27
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		5e-19
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		5e-19
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		9e-19
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		1e-18
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		5e-18
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		6e-18
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		6e-18
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		2e-14

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  217 bits (552), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 1/197 (0%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVV 75
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 198 ESARHFNTIQKYKHIRL 214
            S   FN +QKYK  R+
Sbjct: 196 GSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 1/190 (0%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 75
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 198 ESARHFNTIQ 207
            S   FN +Q
Sbjct: 196 GSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 132/191 (69%), Gaps = 1/191 (0%)
Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ 
Sbjct: 5   PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVV 63
Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ 
Sbjct: 64  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 123
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 124 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 183
Query: 198 ESARHFNTIQK 208
            S   FN +QK
Sbjct: 184 GSTERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 8/197 (4%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G S   VH K  A    G +   
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73  PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
            V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G                
Sbjct: 59  SVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
           +SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R  + T +++  +  +LL+
Sbjct: 119 RSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLI 177
Query: 193 SKGLTESARHFNTIQKY 209
           ++GL E A+  NT+  +
Sbjct: 178 AQGL-EPAQ--NTVHAW 191

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 8/197 (4%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G S   VH K  A    G +   
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73  PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
            V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  G                
Sbjct: 59  TVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
           +SV +   G + F R+RIG+GRPPG+ DP AF+L+ F +  R  + T +++  +  +LL+
Sbjct: 119 RSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLI 177
Query: 193 SKGLTESARHFNTIQKY 209
           ++GL E A+  NT+  +
Sbjct: 178 AQGL-EPAQ--NTVHAW 191

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193
           SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 194 KGL 196
           +G+
Sbjct: 179 QGM 181

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
           +A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193
           SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 194 KGL 196
           +G+
Sbjct: 179 QGM 181

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 8   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 63
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 64  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 123
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
           ++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 124 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 183
Query: 196 LTESARHFNTIQ 207
           LT++    +  +
Sbjct: 184 LTKATNRLHAFK 195

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 4   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 59
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 60  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 119
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
           ++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 120 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 179
Query: 196 LTESARHFNTIQ 207
           LT++    +  +
Sbjct: 180 LTKATNRLHAFK 191

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 8/184 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
           L VGL NPG +Y  TRHN  G   +D  AE     +     +A F     +  +G   V 
Sbjct: 25  LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 80
Query: 76  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
           L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K +
Sbjct: 81  LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 140
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
           ++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + G
Sbjct: 141 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 200
Query: 196 LTES 199
           LT++
Sbjct: 201 LTKA 204

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG +Y  TRHN  GF ++D  A   G ++ +       + +  +    V L +
Sbjct: 25  LIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83
Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
           PQTYMN SG+S   LA ++K+  N +LV HD++ LP G                K +  +
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143
Query: 139 FRGNREFARLRIGIGRPPGQMDPKA----------FLLQKFNAIARERIDTALQEGVEVL 188
              ++++ RLRIGIG P   +   A          F+L+      ++ ID A++  + V+
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202
Query: 189 KLLLSKGLTESA 200
             ++ KG TE A
Sbjct: 203 PAVV-KGETERA 213

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
           L VGLGNPG +Y  TRHN  GF  ++  A+  GI++ N        G+G +    V L  
Sbjct: 6   LIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64
Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
           P TYMN SG+S  P + +Y++    +L+ HD++ +  GV               + ++ +
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124
Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
              N  F RLRIGIG P  +      +L K  +  +  +D A+   +  +KLL+   + +
Sbjct: 125 IGPN--FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182
Query: 199 SARHFNTIQKYK 210
           +    N I  YK
Sbjct: 183 A---MNQINAYK 191

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
           L VGLGNPG +Y  TRHN  G   ++  A +QG+S+  V  +  FG   VG        V
Sbjct: 12  LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 66
Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + 
Sbjct: 67  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 126
Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
           ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 127 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 186
Query: 195 GLTESARHFNT 205
             T + +  ++
Sbjct: 187 DWTRAMQKLHS 197

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
           L VGLGNPG +Y  TRHN  G   ++  A +QG+S+  V  +  FG   VG        V
Sbjct: 6   LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 60
Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + 
Sbjct: 61  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 120
Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
           ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 121 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 180
Query: 195 GLTESARHFNT 205
             T + +  ++
Sbjct: 181 DWTRAMQKLHS 191

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLL 76
           + +GLGN G +Y+ TRHN VG   I   A+    S ++   ++C     +  +    V+L
Sbjct: 25  MIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVL 81
Query: 77  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 136
             P TYMN SG +   +A +YK+    +LV HD++ +  G                +S+ 
Sbjct: 82  VFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI- 140
Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
           N   G  ++ RLRIGIG P  +     ++L   +   ++ ID+A+  G+  L  +++  L
Sbjct: 141 NQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKL 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	1e-94
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	5e-88
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	1e-85
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	2e-82
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	5e-79
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	3e-78
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	8e-78

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  274 bits (702), Expect = 1e-94
 Identities = 110/190 (57%), Positives = 144/190 (75%), Gaps = 1/190 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 17  PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 75

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 76  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195

Query: 198 ESARHFNTIQ 207
            S   FN +Q
Sbjct: 196 GSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  256 bits (657), Expect = 5e-88
 Identities = 77/190 (40%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPV 74
           A P L VGLGNPG  Y  TRHN +GF + D  A   G          A    G      +
Sbjct: 2   AEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+  GG GGHNGL+S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120

Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
           V+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179

Query: 195 GLTESARHFN 204
           G+  +    +
Sbjct: 180 GMEPAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  250 bits (641), Expect = 1e-85
 Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 2/191 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPV 74
               L VGLGNPG +Y  TRHN  G   ++  A +QG+S+          G+       V
Sbjct: 2   TAVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDV 60

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
            L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+  GGHGGHNGL+ 
Sbjct: 61  RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 120

Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
           ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+ 
Sbjct: 121 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 180

Query: 195 GLTESARHFNT 205
             T + +  ++
Sbjct: 181 DWTRAMQKLHS 191

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  242 bits (621), Expect = 2e-82
 Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 2/191 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGL NPG +Y  TRHN  G   +D  AE     +           +  +G   V L 
Sbjct: 3   KLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLL 61

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
            P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
               N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GLT
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181

Query: 198 ESARHFNTIQK 208
           ++    +  + 
Sbjct: 182 KATNRLHAFKA 192

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  234 bits (600), Expect = 5e-79
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 3/184 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPV 74
            +  + +GLGN G +Y+ TRHN VG   I   A+    S ++         +  +    V
Sbjct: 21  PKIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNV 79

Query: 75  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKS 134
           +L  P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+  GGHGGHNGL+S
Sbjct: 80  VLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRS 139

Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
           +  +  G  ++ RLRIGIG P  +     ++L   +   ++ ID+A+  G+  L  +++ 
Sbjct: 140 INQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINY 198

Query: 195 GLTE 198
            L  
Sbjct: 199 KLEP 202

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  232 bits (593), Expect = 3e-78
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGLGNPG +Y  TRHN  GF  ++  A+  GI++          G+G +    V L 
Sbjct: 5   SLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLL 63

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
            P TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+  GGHGGHNGL+ ++ 
Sbjct: 64  LPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVP 123

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +      F RLRIGIG P  +      +L K  +  +  +D A+   +  +KLL+   + 
Sbjct: 124 HI--GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVP 181

Query: 198 ESARHFNTIQK 208
           ++    N  + 
Sbjct: 182 QAMNQINAYKP 192

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  232 bits (593), Expect = 8e-78
 Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 13/198 (6%)

Query: 19  WLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 77
            L VGLGNPG +Y  TRHN  GF ++D  A   G ++         + +  +    V L 
Sbjct: 24  KLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLL 82

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           +PQTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+  GG GGHNGLK +  
Sbjct: 83  EPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISA 142

Query: 138 NFRGNREFARLRIGIGRPP----------GQMDPKAFLLQKFNAIARERIDTALQEGVEV 187
           +   ++++ RLRIGIG P            + D   F+L+      ++ ID A++  + V
Sbjct: 143 HL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAV 201

Query: 188 LKLLLSKGLTESARHFNT 205
           +  ++      +    + 
Sbjct: 202 MPAVVKGETERAMMQLHR 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0
1cfz_A	162	Hydrogenase 2 maturation protease; metzincins, nic	92.99

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=4.1e-79  Score=519.68  Aligned_cols=187  Identities=35%  Similarity=0.638  Sum_probs=179.5

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      |+|||||||||++|++|||| ||||++|+||++++.+++ +.++.+.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus         2 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~   80 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF   80 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence            68999999999999999999 999999999999999986 5678999999999999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~g-t~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      |+|++++|||||||||||+|++|+|.+||+|||||||||+++| | |++|+|||||||||.++.++++|||++|+++|++
T Consensus        81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  159 (193)
T 2pth_A           81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK  159 (193)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHH
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999 6 8999999999999964456999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      .++++++.|++|++.|+++++++|||+||+.
T Consensus       160 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  190 (193)
T 2pth_A          160 LIDEAIDEAARCTEMWFTDGLTKATNRLHAF  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence            9999999999999999999999999999974

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.7e-79  Score=519.18  Aligned_cols=187  Identities=41%  Similarity=0.792  Sum_probs=169.1

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      .|+|||||||||++|++|||| ||||++|+||++++.++.+ .++.+.++++.+.+++|+|+||+||||+||+||+++++
T Consensus         3 ~m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~   81 (191)
T 2z2i_A            3 EPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAK   81 (191)
T ss_dssp             SCEEEEECCCCSHHHHTBGGG-HHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHH
T ss_pred             ccEEEEEECCCCchhccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHH
Confidence            479999999999999999999 9999999999999999865 46889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      ||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++
T Consensus        82 ~yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  160 (191)
T 2z2i_A           82 FYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA  160 (191)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHT
T ss_pred             HhCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999 69999999999999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHFNT  205 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~  205 (219)
                      .++++++.|++|++.|+++++++|||+||+
T Consensus       161 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          161 EVPTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             THHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            999999999999999999999999999995

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.1e-78  Score=520.83  Aligned_cols=190  Identities=57%  Similarity=1.056  Sum_probs=177.1

Q ss_pred             CCCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 027742           15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   94 (219)
Q Consensus        15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~   94 (219)
                      ++.++|||||||||++|++|||| ||||++|+||+++++++++.++.+.++++.+.+++|+|+||+||||+||+||++++
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchH-HHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            46789999999999999999999 99999999999999998877899999999999999999999999999999999999


Q ss_pred             HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHH
Q 027742           95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR  174 (219)
Q Consensus        95 ~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~  174 (219)
                      +||+|++++|||||||||||+|++|+|.+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence            99999999999999999999999999999999999999999999934889999999999997656799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742          175 ERIDTALQEGVEVLKLLLSKGLTESARHFNT  205 (219)
Q Consensus       175 ~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~  205 (219)
                      +.|+++++.|++|++.|+++++++|||+||.
T Consensus       173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~  203 (205)
T 1ryb_A          173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNL  203 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----CCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            9999999999999999999999999999996

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=3e-78  Score=514.33  Aligned_cols=189  Identities=35%  Similarity=0.655  Sum_probs=181.2

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      .++|||||||||++|++|||| |||+++|+||++++.++++ .++.+.+++..+.+++++|+||+||||+||+||+++++
T Consensus         3 ~ikLIVGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~   81 (193)
T 4hoy_A            3 NISLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSK   81 (193)
T ss_dssp             CCCEEEECCCCSTTTTTBGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHH
T ss_pred             CceEEEEcCCCchhhCcCccc-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHH
Confidence            368999999999999999999 9999999999999999855 57889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      ||+|+++++||||||||||+|++|+|.+||+|||||||||+++| || ||+|||||||||+++.++++|||++|+++|++
T Consensus        82 ~~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  159 (193)
T 4hoy_A           82 FYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQS  159 (193)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHH
T ss_pred             HcCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999 56 79999999999988888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhhhchhh
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQK  208 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~~~  208 (219)
                      .++++++.|+++++.|+++++++|||+||++++
T Consensus       160 ~l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp  192 (193)
T 4hoy_A          160 LMDGAIDHALSKVKLLVQGQVPQAMNQINAYKP  192 (193)
T ss_dssp             HHHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            999999999999999999999999999998654

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.9e-78  Score=516.39  Aligned_cols=188  Identities=35%  Similarity=0.622  Sum_probs=180.5

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      ...|||||||||++|++|||| ||||++|+||++++.++.+ .+|.+.++++.+++++++|+||+||||+||+||+++++
T Consensus         9 ~~~lIvGLGNPG~~Y~~TRHN-vGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~   87 (199)
T 4fyj_A            9 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG   87 (199)
T ss_dssp             CCCEEEECCCCSGGGTTCGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             eeeEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHH
Confidence            457999999999999999999 9999999999999998864 47889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEeecCCCCCCCccccccCcCCHHHH
Q 027742           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIAR  174 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~-~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~  174 (219)
                      ||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|+
T Consensus        88 ~yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  166 (199)
T 4fyj_A           88 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQ  166 (199)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHH
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHH
Confidence            99999999999999999999999999999999999999999999 687 9999999999998777899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          175 ERIDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       175 ~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      +.|+++++.|++|++.|+++++++|||+||+.
T Consensus       167 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          167 ELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999999999974

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=1.8e-77  Score=518.51  Aligned_cols=189  Identities=34%  Similarity=0.612  Sum_probs=175.9

Q ss_pred             CCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 027742           16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA   94 (219)
Q Consensus        16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~   94 (219)
                      ..+||||||||||++|++|||| ||||++|+||++++.++.+. +|.+.++++.+.+++|+|+||+||||+||++|++++
T Consensus        21 m~~~LIVGLGNPG~~Y~~TRHN-iGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~   99 (222)
T 3v2i_A           21 SMIKLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALA   99 (222)
T ss_dssp             -CCCEEEECCCCSGGGTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             ceEEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHH
Confidence            4568999999999999999999 99999999999999998664 688999999999999999999999999999999999


Q ss_pred             HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCC----------CCCCCcccc
Q 027742           95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAF  164 (219)
Q Consensus        95 ~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP----------~~~~~v~~y  164 (219)
                      +||+|++++|||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||          +.+.++++|
T Consensus       100 ~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~y  178 (222)
T 3v2i_A          100 HFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANF  178 (222)
T ss_dssp             HHHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHH
T ss_pred             HHhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHH
Confidence            999999999999999999999999999999999999999999999 699999999999999          555689999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          165 LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       165 VL~~F~~~E~~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      ||++|+++|++.|++++++|++|++.|+++++++|||+||+.
T Consensus       179 VL~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~  220 (222)
T 3v2i_A          179 VLKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN  220 (222)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999974

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=7e-78  Score=516.45  Aligned_cols=185  Identities=32%  Similarity=0.604  Sum_probs=178.7

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      .|||||||||||++|++|||| ||||++|+||++++.++.+. +|.+.++++.+++++++|+||+||||+||++|+++++
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHN-vGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (207)
T 3nea_A           22 KIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVAN  100 (207)
T ss_dssp             CCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHH
T ss_pred             CcEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHH
Confidence            489999999999999999999 99999999999999998765 7889999999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      ||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~  179 (207)
T 3nea_A          101 FYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKK  179 (207)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred             HhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHH
Confidence            99999999999999999999999999999999999999999999 69999999999999987778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhh
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHF  203 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~  203 (219)
                      .|++++++|++|++.|+++++++|||++
T Consensus       180 ~l~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          180 DIDSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            9999999999999999999999999874

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=3.2e-79  Score=520.60  Aligned_cols=187  Identities=35%  Similarity=0.623  Sum_probs=178.4

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   96 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   96 (219)
                      |+|||||||||++|++|||| ||||++|+||++++.++. +.+|.+.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus         4 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f   82 (194)
T 4fno_A            4 VQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   82 (194)
Confidence            68999999999999999999 999999999999999876 4578899999889999999999999999999999999999


Q ss_pred             cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt-~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      |+|+++++||||||||||+|++|+|.+||+|||||||||+++| || ++|+|||||||||.++.++++|||++|+++|++
T Consensus        83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  161 (194)
T 4fno_A           83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  161 (194)
Confidence            9999999999999999999999999999999999999999999 68 899999999999965557999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHFNTI  206 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~  206 (219)
                      .++++++.|++|++.|+++++++|||+||..
T Consensus       162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  192 (194)
T 4fno_A          162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  192 (194)
Confidence            9999999999999999999999999999973

>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A

Probab=92.99  E-value=0.85  Score=36.49  Aligned_cols=134  Identities=20%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   97 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   97 (219)
                      +.+|+|+|||=..    -== +|..++++|.+++..+.                 .+-++--.|    .|..+...+.  
T Consensus         2 ~ilVlGiGN~l~g----DDG-~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~--   53 (162)
T 1cfz_A            2 RILVLGVGNILLT----DEA-IGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA--   53 (162)
T ss_dssp             CEEEEEESCTTBG----GGG-HHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS--
T ss_pred             CEEEEEECCcccc----ccc-HHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh--
Confidence            3689999999321    123 99999999998754321                 111111111    1222211121  


Q ss_pred             CCCCCceEEEee---cCCCCCceEEEec--------CCCCCCCC-chhhHHHhhcCCCCcc-EE-EEeecCCCCCCCccc
Q 027742           98 KLPLNRVLVFHD---DMGLPCGVLRLRH--------NGGHGGHN-GLKSVMNNFRGNREFA-RL-RIGIGRPPGQMDPKA  163 (219)
Q Consensus        98 ki~~~~ilVihD---Dldlp~G~irlk~--------gGs~gGHN-GLkSIi~~L~gt~~f~-Rl-rIGIGrP~~~~~v~~  163 (219)
                         -.+.+||.|   +.+.++|+++.-.        ..+...|+ |+..+++.+.-..+++ ++ =||| .|.   ++ +
T Consensus        54 ---~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~  125 (162)
T 1cfz_A           54 ---NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-E  125 (162)
T ss_dssp             ---SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-C
T ss_pred             ---CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-C
Confidence               136777778   6688999988632        11223344 7888777652122455 33 4577 343   22 3


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHH
Q 027742          164 FLLQKFNAIARERIDTALQEGVEVL  188 (219)
Q Consensus       164 yVL~~F~~~E~~~l~~~i~~a~~~l  188 (219)
                      + -...|++=++.++++++.+.+.+
T Consensus       126 ~-g~~LS~~v~~av~~a~~~i~~~l  149 (162)
T 1cfz_A          126 P-HIGLTPTVEAMIEPALEQVLAAL  149 (162)
T ss_dssp             S-BSSCCHHHHTTHHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            3 34566655555555444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	1e-56
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	2e-47

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  176 bits (447), Expect = 1e-56
 Identities = 110/190 (57%), Positives = 144/190 (75%), Gaps = 1/190 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
           PWL  GLGNPG+KY GTRHN VGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ 
Sbjct: 3   PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 61

Query: 78  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 137
           KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ 
Sbjct: 62  KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 121

Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
           +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG +
Sbjct: 122 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 181

Query: 198 ESARHFNTIQ 207
            S   FN +Q
Sbjct: 182 GSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  152 bits (386), Expect = 2e-47
 Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 2/186 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 78
           L VGL NPG +Y  TRHN  G   +D  AE     +           +  +G   V L  
Sbjct: 4   LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 79  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 138
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
              N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GLT+
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 199 SARHFN 204
           +    +
Sbjct: 183 ATNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.1e-75  Score=495.77  Aligned_cols=187  Identities=58%  Similarity=1.081  Sum_probs=176.5

Q ss_pred             CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742           18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   97 (219)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   97 (219)
                      +||||||||||++|++|||| |||+++|+||++++.+++..++.+.++...+++++++|+||+||||+||++|++++++|
T Consensus         3 p~LIvGLGNPG~~Y~~TRHN-iG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~   81 (191)
T d1ryba_           3 PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYY   81 (191)
T ss_dssp             CEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCCccccCCccH-HHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhh
Confidence            69999999999999999999 99999999999999998888888999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHH
Q 027742           98 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERI  177 (219)
Q Consensus        98 ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~l  177 (219)
                      ++++++++|||||||||+|++|+|.+||+|||||||||+++|+|+++|+|||||||||+.+.++++|||++|+++|++.+
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l  161 (191)
T d1ryba_          82 QVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI  161 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHH
T ss_pred             ccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999966788999999999998878999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742          178 DTALQEGVEVLKLLLSKGLTESARHFNT  205 (219)
Q Consensus       178 ~~~i~~a~~~l~~~i~~~~~~amn~~n~  205 (219)
                      +++++.++++++.|+++|+++|||+||.
T Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~mn~~N~  189 (191)
T d1ryba_         162 DTALEQGVDAVRTLVLKGFSGSTERFNL  189 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCC
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHhhC
Confidence            9999999999999999999999999996

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-75  Score=490.56  Aligned_cols=191  Identities=34%  Similarity=0.614  Sum_probs=180.6

Q ss_pred             CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742           17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   95 (219)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   95 (219)
                      .|+|||||||||++|++|||| |||+++|.||++++.+++. .++.+.++...+.+.+++|+||+||||+||++|+++++
T Consensus         1 ~mklivGLGNPG~~Y~~TRHN-iG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~   79 (193)
T d2ptha_           1 TIKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMAS   79 (193)
T ss_dssp             CCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHH
T ss_pred             CEEEEEECCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHH
Confidence            378999999999999999999 9999999999999999764 46778888999999999999999999999999999999


Q ss_pred             hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742           96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  175 (219)
Q Consensus        96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~  175 (219)
                      +|++++++++|||||+|||+|++|+|.+||+|||||||||+++|+.+++|+|||||||||+.+.++++|||++|+++|++
T Consensus        80 ~~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~  159 (193)
T d2ptha_          80 FFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK  159 (193)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHH
T ss_pred             HhCCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999434589999999999987778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHhhhchhh
Q 027742          176 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQK  208 (219)
Q Consensus       176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~~~  208 (219)
                      .++++++.++++++.|+++|+++|||+||+.+.
T Consensus       160 ~l~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         160 LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCcCC
Confidence            999999999999999999999999999998654