Citrus Sinensis ID: 027762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIAEAGANTGAPARSDSDESDDSM
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEccccHHHHHHHHHHccccccccccEEEEEcccccEEEEEEccEEEcEEEEccccEEEEEEEcccccEEEEcccccEEEEEcccccccccEEcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHEEEEEccccHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEccEEEEEEEEcccEEEEcccccccccEEEEEcHHEEEEEEcccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mqlprlfffsgNKFNRALMEEQFILRVPPSVAERIDRLlsenesseedksldlsfcedgrsgtfvigndhfpvslmdlpcvvesfktyddcalvktadigqmimvrepgdstpdaveyrhgltppmrdARKRrfrrepdlnpeLVQRVEKDLLNImtgatvenadpevneqeeegdgnarhanrkdapspqlkqpdiaeagantgaparsdsdesddsm
Flexible Loop (DISEMBL)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLsenesseedksldlsfCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMimvrepgdstpdaveyrhgltppmrdarkrrfrrepdlnpelvqRVEKDLLNIMTgatvenadpevnEQEEEgdgnarhanrkdapspqlkqpdiaeagantgaparsdsdesddsm
Low Complexity Region (SEG)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRllsenesseedksldlsFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIAEAGANTGAPARSDSDESDDSM
Disordered region (IsUnstruct)
****RLFFFSGNKFNRALMEEQFILRVPPSV*********************LSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMV***********************************************LNI****************************************************************
Disordered Region (DISOPRED)
*****************LMEEQFILRVPPSVAERIDRLL**********SLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADP*****************************************************
Disordered Region (DISEMBL)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLS***********DLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENAD**************************LKQPDIAEAG******************
Disordered Region (DISPRO)
**LPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENAD******************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLPRLFFFSGNKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIAEAGANTGAPARSDSDESDDSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9R1C0	341	Transcription initiation	yes	no	0.707	0.454	0.315	1e-16
Q6R1L1	341	Transcription initiation	yes	no	0.707	0.454	0.310	9e-16
Q5R7L9	349	Transcription initiation	no	no	0.698	0.438	0.317	1e-15
Q4R5A5	349	Transcription initiation	N/A	no	0.698	0.438	0.317	1e-15
Q15545	349	Transcription initiation	yes	no	0.698	0.438	0.317	1e-15
Q5H9L4	462	Transcription initiation	no	no	0.657	0.311	0.311	5e-15
Q2HJG8	349	Transcription initiation	no	no	0.707	0.444	0.299	5e-14
Q9D3R9	471	Transcription initiation	no	no	0.502	0.233	0.320	1e-13
Q9VHY5	479	Transcription initiation	yes	no	0.730	0.334	0.3	1e-11
O13701	393	Transcription initiation	yes	no	0.534	0.297	0.322	2e-11

>sp|Q9R1C0|TAF7_MOUSE Transcription initiation factor TFIID subunit 7 OS=Mus musculus GN=Taf7 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 32/187 (17%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +DK L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYAATVRRAVQSGHVNLKDK-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
            + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E 
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189

Query: 169 NEQEEEG 175
            E E +G
Sbjct: 190 KETENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).
Mus musculus (taxid: 10090)

>sp|Q6R1L1|TAF7_CRIGR Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 32/187 (17%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           PCV+ES KT D     KTADI QM++    GD  P   E                     
Sbjct: 71  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
            + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E 
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189

Query: 169 NEQEEEG 175
            E E +G
Sbjct: 190 KETENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Cricetulus griseus (taxid: 10029)

>sp|Q5R7L9|TAF7_PONAB Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G  ++  D  P++  L+
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68

Query: 77  DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
           DLPCV+ES KT D     KTADI QM++    GD  P   E                   
Sbjct: 69  DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128

Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
              + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ 
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187

Query: 167 EVNEQEEEG 175
           E  E E +G
Sbjct: 188 ETKEAENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Pongo abelii (taxid: 9601)

>sp|Q4R5A5|TAF7_MACFA Transcription initiation factor TFIID subunit 7 OS=Macaca fascicularis GN=TAF7 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G  ++  D  P++  L+
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68

Query: 77  DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
           DLPCV+ES KT D     KTADI QM++    GD  P   E                   
Sbjct: 69  DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128

Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
              + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ 
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187

Query: 167 EVNEQEEEG 175
           E  E E +G
Sbjct: 188 ETKEAENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Macaca fascicularis (taxid: 9541)

>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G  ++  D  P++  L+
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68

Query: 77  DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
           DLPCV+ES KT D     KTADI QM++    GD  P   E                   
Sbjct: 69  DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128

Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
              + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ 
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187

Query: 167 EVNEQEEEG 175
           E  E E +G
Sbjct: 188 ETKEAENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Homo sapiens (taxid: 9606)

>sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subunit 7-like OS=Homo sapiens GN=TAF7L PE=2 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 23/167 (13%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+P   A  + R L+ ++S +    L +    DGR     + +      L+DL
Sbjct: 98  VENQFILRLPLEHACTV-RNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDL 156

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDST-PDAVE---------- 117
           PCV+ES +T D     KTADI QM++            EP  ST P+ V           
Sbjct: 157 PCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKC 216

Query: 118 -YRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVEN 163
            ++HG+TPP+++ RK+RFR+     P++ +  +      +    VEN
Sbjct: 217 VWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVEN 263

Probably functions as a spermatogensis-specific component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q2HJG8|TAF7_BOVIN Transcription initiation factor TFIID subunit 7 OS=Bos taurus GN=TAF7 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 32/187 (17%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFILR+PP  A  + R +     + +D+ L +    DGR G   +        L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
           P V+ES KT D     KTAD+ QM++    GD  P   E                     
Sbjct: 71  PRVMESLKTIDKKTFYKTADVCQMLVSTVDGDLYPPVEEPVATADPKASKKKDKDKEKKF 130

Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
            + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E 
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189

Query: 169 NEQEEEG 175
            E E +G
Sbjct: 190 KETENQG 196

Functions as a component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

Bos taurus (taxid: 9913)

>sp|Q9D3R9|TAF7L_MOUSE Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 24/134 (17%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +EEQFILR+PP  A  + +++    ++ +DK L + F  DG      + N   P  L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKDK-LKIDFSPDGHHAVVQVDNVSLPAKLVNL 164

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDSTPDAV------------ 116
           PCV+ S KT D     KTAD+ QM++            EP  ST   V            
Sbjct: 165 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 224

Query: 117 -EYRHGLTPPMRDA 129
             ++HG+TPP+++ 
Sbjct: 225 YNWKHGITPPLKNV 238

Probably functions as a spermatogensis-specific component of the DNA-binding general transcription factor complex TFIID, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q9VHY5|TAF7_DROME Transcription initiation factor TFIID subunit 7 OS=Drosophila melanogaster GN=Taf7 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 40/200 (20%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +E QFI+RVP  +A+ +   +  N  + +D+ L +    D R G   I +      L+DL
Sbjct: 55  LESQFIMRVPKELADTVHEAI--NAGTIKDR-LTIQLDPDLRYGEVRIDDQILYTKLVDL 111

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE-----------------YRHG 121
           P VVES+KT D+ +  K+ADI Q+++ +E  +   +                    + HG
Sbjct: 112 PTVVESYKTIDNKSFYKSADICQILICKEEREDETEKESPNKNKKKDPNKVDKKYLFPHG 171

Query: 122 LTPPMRDARKRRFRREPDLN----PELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDG 177
           +TPP ++ RKRRFR+         PE+ + V K LL I   A     D E+         
Sbjct: 172 ITPPCKNVRKRRFRKTLKKKNVEAPEIEKEV-KHLLRIDNEAV--RVDYEI--------- 219

Query: 178 NARHANRKDAPSPQLKQPDI 197
                N +D P  +L+Q DI
Sbjct: 220 ----INEEDKPMDELEQSDI 235

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors.

Drosophila melanogaster (taxid: 7227)

>sp|O13701|TAF7_SCHPO Transcription initiation factor TFIID subunit 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf7 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           +EEQ ILR+PP       R   EN        + + F +D R     +    +   L+DL
Sbjct: 72  IEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKF-KDQRRAVVHVNGHLYAAKLVDL 130

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE---------YRHGLTPPMRDA 129
           PC++ES K++D   + K ADI QM++  E  +     +          Y HGLT PM   
Sbjct: 131 PCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHWV 190

Query: 130 RKRRFRR 136
           R++RFR+
Sbjct: 191 RQKRFRK 197

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Also involved in the transport of mRNA from the nucleus to the cytoplasm.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
359478454	205	PREDICTED: transcription initiation fact	0.894	0.956	0.776	3e-77
297853236	202	hypothetical protein ARALYDRAFT_474587 [	0.899	0.975	0.689	2e-71
15222691	203	TBP-associated factor 7 [Arabidopsis tha	0.894	0.965	0.692	2e-71
356552707	200	PREDICTED: transcription initiation fact	0.908	0.995	0.742	3e-69
363807138	200	uncharacterized protein LOC100806004 [Gl	0.908	0.995	0.742	7e-69
363814493	200	uncharacterized protein LOC100782843 [Gl	0.908	0.995	0.737	6e-68
449531832	201	PREDICTED: transcription initiation fact	0.858	0.935	0.730	3e-66
449450024	201	PREDICTED: transcription initiation fact	0.858	0.935	0.724	8e-66
77416967	197	unknown [Solanum tuberosum]	0.899	1.0	0.696	1e-65
79319993	239	TBP-associated factor 7 [Arabidopsis tha	0.666	0.610	0.815	2e-64

>gi|359478454|ref|XP_002285704.2| PREDICTED: transcription initiation factor TFIID subunit 7-like [Vitis vinifera]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 176/201 (87%), Gaps = 5/201 (2%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPS+AERI+RLL+EN SS EDKSLDLSF EDGRSGTFVIGNDHFP SL+DL
Sbjct: 10  MEEQFILRVPPSIAERIERLLNENSSSSEDKSLDLSFSEDGRSGTFVIGNDHFPASLLDL 69

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCV+ES+KTYDD  L+KTADIGQMIMVRE GD+ PD VEYRHGLTPPMRDARKRRFRREP
Sbjct: 70  PCVLESYKTYDDSVLIKTADIGQMIMVREEGDTAPDVVEYRHGLTPPMRDARKRRFRREP 129

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIA 198
           DLNPELV+RVE+DLLNIM G T EN    V EQEE+GD +AR+A++K AP+P + +PD+ 
Sbjct: 130 DLNPELVRRVERDLLNIMAGGTAEN----VAEQEEDGDEHARNASKKSAPAP-IPKPDVP 184

Query: 199 EAGANTGAPARSDSDESDDSM 219
           EAGAN G P RS+SDESDDSM
Sbjct: 185 EAGANAGEPDRSESDESDDSM 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853236|ref|XP_002894499.1| hypothetical protein ARALYDRAFT_474587 [Arabidopsis lyrata subsp. lyrata] gi|297340341|gb|EFH70758.1| hypothetical protein ARALYDRAFT_474587 [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/206 (68%), Positives = 167/206 (81%), Gaps = 9/206 (4%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLS+  S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSDEASTSDEIPLDLCFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVES+KTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESWKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEE-EGDGNARHANRKDAPSPQ-LKQPD 196
           DLNPELVQRVE+DLLNI++G TVEN    VNEQEE   + NA + N+K + SP   ++P+
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVEN----VNEQEEAAANENASNENKKVSSSPTPAEKPE 176

Query: 197 IAEAGANTGA---PARSDSDESDDSM 219
             E G +  A   P RS+S++SDDSM
Sbjct: 177 APETGTSNPAGVEPERSESEDSDDSM 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222691|ref|NP_175926.1| TBP-associated factor 7 [Arabidopsis thaliana] gi|12323163|gb|AAG51559.1|AC027034_5 Serine/arginine-rich protein, putative; 48931-50251 [Arabidopsis thaliana] gi|38638688|gb|AAR25638.1| At1g55300 [Arabidopsis thaliana] gi|39545922|gb|AAR28024.1| TAF7 [Arabidopsis thaliana] gi|50253538|gb|AAT71971.1| At1g55300 [Arabidopsis thaliana] gi|222423319|dbj|BAH19635.1| AT1G55300 [Arabidopsis thaliana] gi|332195099|gb|AEE33220.1| TBP-associated factor 7 [Arabidopsis thaliana]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/208 (69%), Positives = 172/208 (82%), Gaps = 12/208 (5%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLSE+ S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG-DGNARHANRK---DAPSPQLKQ 194
           DLNPELVQRVE+DLLNI++G TVEN    V+EQEE   + NA +A++K    +P+P +++
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVEN----VHEQEEPATNENASNASKKVSSSSPTP-VEK 175

Query: 195 PDIAEAGAN--TGA-PARSDSDESDDSM 219
           P+  E G +  TG  P RS+S++SDDSM
Sbjct: 176 PEAPETGTSNPTGVEPERSESEDSDDSM 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552707|ref|XP_003544704.1| PREDICTED: transcription initiation factor TFIID subunit 7-like [Glycine max]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 166/202 (82%), Gaps = 3/202 (1%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENE-SSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           MEEQFILRVPP+VAERI+RLL+EN  SS EDKSLDLSF EDGRSGTF+IGN+ FP SL+D
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
           LPCVVES+KTYDD +L+KTA+IGQMIMVRE GD+ PD +EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTANIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 138 PDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDI 197
           PDLNPELV RVEKDLL IM G T +N D E  EQ EEGD NAR AN+K AP P  K  DI
Sbjct: 121 PDLNPELVSRVEKDLLKIMAGGTADNLDVETAEQ-EEGDENARGANKKSAPKPAPKH-DI 178

Query: 198 AEAGANTGAPARSDSDESDDSM 219
            E   N G   RSDS+ESDDS+
Sbjct: 179 PENLTNAGEADRSDSEESDDSV 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807138|ref|NP_001242342.1| uncharacterized protein LOC100806004 [Glycine max] gi|255635493|gb|ACU18098.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 165/202 (81%), Gaps = 3/202 (1%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENE-SSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           MEEQFILRVPP+VAERI+RLL+EN  SS EDKSLDLSF EDGRSGTF+IGN+ FP SL+D
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
           LPCVVES+KTYDD +L+KTADIGQMIMVRE GD+ PD +EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 138 PDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDI 197
           PDLNP LV RVEKDLL IM G T +N D E  EQ EEGD NAR AN+K AP P  K  DI
Sbjct: 121 PDLNPGLVSRVEKDLLKIMAGGTADNLDVETAEQ-EEGDENARGANKKSAPKPAPKH-DI 178

Query: 198 AEAGANTGAPARSDSDESDDSM 219
            E   N G   RSDS+ESDDS+
Sbjct: 179 PENLTNAGEADRSDSEESDDSV 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814493|ref|NP_001242881.1| uncharacterized protein LOC100782843 [Glycine max] gi|255628987|gb|ACU14838.1| unknown [Glycine max]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 149/202 (73%), Positives = 164/202 (81%), Gaps = 3/202 (1%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENE-SSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           MEEQFILRVP +VAERI+RLL+EN  SS EDKSLDLSF EDGRSGTF+IGN+ FP SL+D
Sbjct: 1   MEEQFILRVPSNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLD 60

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
           LPCVVES+KTYDD +L+KTADIGQMIMVRE GD+ PD +EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 138 PDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDI 197
           PDLNPELV RVEKDLL IM G T +N D E  EQ EEGD NAR AN+K AP P  K  DI
Sbjct: 121 PDLNPELVSRVEKDLLKIMAGGTADNLDVETAEQ-EEGDENARGANKKSAPKPAPKH-DI 178

Query: 198 AEAGANTGAPARSDSDESDDSM 219
            E   N G    SDS+ESDDS+
Sbjct: 179 PENLTNAGEADGSDSEESDDSV 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531832|ref|XP_004172889.1| PREDICTED: transcription initiation factor TFIID subunit 7-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQF+LRVPPSVAERI+RLL+EN SS +D SLDLSF EDGRSGTF IG+DHFP SL+DL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCVVES+KTYDD  L+K ADIGQMIMVREP D  PD+ EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIA 198
           DLNPELV+RVEKDLLNIM G T ENAD  V EQ+++ D N  H N K A +P  K PD+ 
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPK-PDVM 179

Query: 199 EAGANTGAP 207
           E   N G P
Sbjct: 180 ETETNVGEP 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450024|ref|XP_004142764.1| PREDICTED: transcription initiation factor TFIID subunit 7-like [Cucumis sativus]

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/189 (72%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQF+LRVPPSVAERI+RLL+EN SS +D SLDLSF +DGRSGTF IG+DHFP SL+DL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PCVVES+KTYDD  L+K ADIGQMIMVREP D  PD+ EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIA 198
           DLNPELV+RVEKDLLNIM G T ENAD  V EQ+++ D N  H N K A +P  K PD+ 
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPK-PDVM 179

Query: 199 EAGANTGAP 207
           E   N G P
Sbjct: 180 ETETNVGEP 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416967|gb|ABA81879.1| unknown [Solanum tuberosum]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 166/201 (82%), Gaps = 4/201 (1%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           M+EQFILRVPPSVAERIDRLLSEN SSE+   LDLSF EDG++G+FVIG++HFP SL++L
Sbjct: 1   MDEQFILRVPPSVAERIDRLLSENSSSED--KLDLSFSEDGKTGSFVIGDEHFPASLLNL 58

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           PC+VES+KTYDD  L+K+ADIGQMIMVRE GD  PD VEYRHGLTPPMRDAR+RRFRREP
Sbjct: 59  PCIVESYKTYDDNVLIKSADIGQMIMVREEGDPVPDVVEYRHGLTPPMRDARRRRFRREP 118

Query: 139 DLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIA 198
           DLNPELV+RV+KDL NIM+G T EN D EV EQ E G+ +ARH N+K A  P  K PDI+
Sbjct: 119 DLNPELVRRVDKDLQNIMSGGTAENIDIEVVEQVEGGEASARHVNKKVA-QPATK-PDIS 176

Query: 199 EAGANTGAPARSDSDESDDSM 219
           E G     P R++S++SDDS+
Sbjct: 177 EPGTAGEDPDRTESEDSDDSI 197

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319993|ref|NP_001031194.1| TBP-associated factor 7 [Arabidopsis thaliana] gi|222423441|dbj|BAH19691.1| AT1G55300 [Arabidopsis thaliana] gi|332195100|gb|AEE33221.1| TBP-associated factor 7 [Arabidopsis thaliana]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 132/146 (90%)

Query: 19  MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
           MEEQFILRVPPSV+ERIDRLLSE+ S+ ++  LDL F EDGR+GTF+IGND FP SL+DL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 79  PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
           P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 139 DLNPELVQRVEKDLLNIMTGATVENA 164
           DLNPELVQRVE+DLLNI++G TVEN 
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVENV 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2035656	239	TAF7 "TBP-associated factor 7"	0.662	0.606	0.765	2e-56
MGI|MGI:1346348	341	Taf7 "TAF7 RNA polymerase II,	0.497	0.319	0.356	3.8e-16
RGD|1309935	341	Taf7 "TAF7 RNA polymerase II,	0.497	0.319	0.356	4.9e-16
WB|WBGene00006388	254	taf-7.1 [Caenorhabditis elegan	0.374	0.322	0.352	5.2e-14
UNIPROTKB|Q20788	254	taf-7.1 "Protein TAF-7.1" [Cae	0.374	0.322	0.352	5.2e-14
POMBASE|SPAC13F5.02c	393	ptr6 "transcription factor TFI	0.666	0.371	0.296	2.1e-13
WB|WBGene00006389	236	taf-7.2 [Caenorhabditis elegan	0.844	0.783	0.285	4.4e-13
UNIPROTKB|F1LV83	353	F1LV83 "Uncharacterized protei	0.474	0.294	0.308	5.3e-12
ASPGD|ASPL0000064029	495	AN7559 [Emericella nidulans (t	0.593	0.262	0.310	5.3e-11
UNIPROTKB|F1NI87	363	TAF7 "Uncharacterized protein"	0.525	0.316	0.330	2.7e-10

TAIR|locus:2035656 TAF7 "TBP-associated factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 111/145 (76%), Positives = 120/145 (82%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDL 78
             MEEQFILRVPPSV+ERIDR                 F EDGR+GTF+IGND FP SL+DL
Sbjct:     1 MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query:    79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRREP 138
             P VVESFKTYDDCALVKTADIGQMIMVREPGD  P+ VEYRHGLTPPM+DARKRRFRREP
Sbjct:    61 PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query:   139 DLNPELVQRVEKDLLNIMTGATVEN 163
             DLNPELVQRVE+DLLNI++G TVEN
Sbjct:   121 DLNPELVQRVERDLLNILSGGTVEN 145

GO:0005634 "nucleus" evidence=ISM

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

MGI|MGI:1346348 Taf7 "TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
 Identities = 41/115 (35%), Positives = 53/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYAATVRRAVQSGHVNLKDKLSIELH-PDGRHG--IVRVDRVPLAAKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV ES KT D     KTADI QM++    GD  P  VE       P  + +K
Sbjct:    69 DLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPP-VEEAAATADPKANKKK 122

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0035035 "histone acetyltransferase binding" evidence=ISO;IPI

GO:0035067 "negative regulation of histone acetylation" evidence=ISO

GO:0042809 "vitamin D receptor binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1309935 Taf7 "TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
 Identities = 41/115 (35%), Positives = 53/115 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QFILR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    12 LESQFILRLPPEYAATVRRAVQSGHVNLKDRLSIELH-PDGRHG--IVRVDRVPLAAKLV 68

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARK 131
             DLPCV ES KT D     KTADI QM++    GD  P  VE       P  + +K
Sbjct:    69 DLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPP-VEEPAATADPKANKKK 122

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA;ISO

GO:0008024 "positive transcription elongation factor complex b" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IEA;ISO

GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO

GO:0035035 "histone acetyltransferase binding" evidence=IEA;ISO

GO:0035067 "negative regulation of histone acetylation" evidence=IEA;ISO

GO:0042809 "vitamin D receptor binding" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

GO:0071339 "MLL1 complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

WB|WBGene00006388 taf-7.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
 Identities = 30/85 (35%), Positives = 41/85 (48%)

Query:    20 EEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDLP 79
             EE  ILRVPP V  R+++                 F ED R+    +GN   P  ++DLP
Sbjct:    24 EEHLILRVPPDVVNRMEKAVNGEIDAEELGIN---FQEDNRTVQIRLGNQILPAKILDLP 80

Query:    80 CVVESFKTYDDCALVKTADIGQMIM 104
              + E  KT D+  L K  D+ QMI+
Sbjct:    81 TINEVHKTLDNSTLYKVTDVSQMII 105

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=ISS

GO:0035034 "histone acetyltransferase regulator activity" evidence=ISS

GO:0000988 "protein binding transcription factor activity" evidence=ISS

UNIPROTKB|Q20788 taf-7.1 "Protein TAF-7.1" [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
 Identities = 30/85 (35%), Positives = 41/85 (48%)

Query:    20 EEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDLP 79
             EE  ILRVPP V  R+++                 F ED R+    +GN   P  ++DLP
Sbjct:    24 EEHLILRVPPDVVNRMEKAVNGEIDAEELGIN---FQEDNRTVQIRLGNQILPAKILDLP 80

Query:    80 CVVESFKTYDDCALVKTADIGQMIM 104
              + E  KT D+  L K  D+ QMI+
Sbjct:    81 TINEVHKTLDNSTLYKVTDVSQMII 105

GO:2001141 "regulation of RNA biosynthetic process" evidence=ISS

GO:0035065 "regulation of histone acetylation" evidence=ISS

POMBASE|SPAC13F5.02c ptr6 "transcription factor TFIID complex subunit Taf7" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 153 (58.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 48/162 (29%), Positives = 75/162 (46%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDH-FPVSLMD 77
             +EEQ ILR+PP       R                 F +  R+   V  N H +   L+D
Sbjct:    72 IEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQRRAVVHV--NGHLYAAKLVD 129

Query:    78 LPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE---------YRHGLTPPMRD 128
             LPC++ES K++D   + K ADI QM++  E  +     +          Y HGLT PM  
Sbjct:   130 LPCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHW 189

Query:   129 ARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNE 170
              R++RFR+   ++   ++ VE ++  ++  A  E A+   NE
Sbjct:   190 VRQKRFRKR--VSNRTIEAVENEVDRLL--AMDERAESTSNE 227

GO:0000991 "core RNA polymerase II binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

WB|WBGene00006389 taf-7.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 61/214 (28%), Positives = 93/214 (43%)

Query:    20 EEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDLP 79
             E   +LRVP     RI++                    D R+ T  IGN      ++DLP
Sbjct:    36 ESHIVLRVPEDCVGRIEKIIQSDGKHEEFSLNLNS---DARNSTVRIGNQLLNGKILDLP 92

Query:    80 CVVESFKTYDDCALVKTADIGQMIM-----VREPGDSTPDAVE-----------YRHGLT 123
              + E  KT D+ +L K AD+ Q+++     +     S+ DA +           Y HGLT
Sbjct:    93 TITEIHKTLDNKSLYKVADVSQILVCTHDSINSIASSSEDAAQKAAAAKAKQWQYPHGLT 152

Query:   124 PPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHAN 183
             PPM+ ARK+RFR+           VEK+L  ++  A +E AD   + + E  +GN   A 
Sbjct:   153 PPMKSARKKRFRKTKKKKFMDAPEVEKELKRLLR-ADLE-AD---SVKWEIVEGNKEGAT 207

Query:   184 RKDAPSPQLKQPDIAEAGANTGAPARSDSDESDD 217
              +      +  P  +E  ++ G     D D+ DD
Sbjct:   208 DEVRTQRHVTYPSSSEDESDVG-----DDDDKDD 236

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1LV83 F1LV83 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 33/107 (30%), Positives = 47/107 (43%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDL 78
             +E QFILR+PP  A  + R                    D R     + +      ++DL
Sbjct:    18 LENQFILRLPPEHASTV-RKIIRSGNAAMRDKLKIDLSPDSRHAIVQVDDVSLSAKVVDL 76

Query:    79 PCVVESFKTYDDCALVKTADIGQMIMVREPGD--STPDAVEYRHGLT 123
             PCV+ S KT+D     KTAD+ QM++    GD  S+P+      G T
Sbjct:    77 PCVIGSLKTHDRKTFYKTADVSQMLLCSAEGDLHSSPEEPATSAGAT 123

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

ASPGD|ASPL0000064029 AN7559 [Emericella nidulans (taxid:162425)]

 Score = 161 (61.7 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 46/148 (31%), Positives = 70/148 (47%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVSLMDL 78
             +EEQFILR+ P       R                    +GR     I +  +  +L+DL
Sbjct:   139 IEEQFILRMLPGEDCEYLRRAINERRFDRSEFSFKPLNREGRRAVLKIRDKQYAAALVDL 198

Query:    79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAV----------------EYRHGL 122
             PC++E  K++D     K+ADI QM++V    ++  DA+                +Y HGL
Sbjct:   199 PCIIEGMKSWDRRGWYKSADICQMLLVLGQINNETDALNYPLPAEVQRLDDKTLQYPHGL 258

Query:   123 TPPMRDARKRRFRREPDLNPELVQRVEK 150
             TPP+R  RKRRFR    ++   +++VEK
Sbjct:   259 TPPLRWVRKRRFRDR--ISTRTIEQVEK 284

GO:0003674 "molecular_function" evidence=ND

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1NI87 TAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 40/121 (33%), Positives = 59/121 (48%)

Query:    19 MEEQFILRVPPSVAERIDRXXXXXXXXXXXXXXXXXFCEDGRSGTFVIGNDHFPVS--LM 76
             +E QF+LR+PP  A  + R                    DGR G  ++  D  P++  L+
Sbjct:    18 LESQFVLRLPPEYASTVRRAVQSGSVNLKDRLTIELHA-DGRHG--IVRVDRVPLAAKLV 74

Query:    77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPMRDARKRRFRR 136
             DLPC++ES KT D     KTADI QM++    GD  P  +E +   T P  + +K + R 
Sbjct:    75 DLPCIIESLKTIDKKTFYKTADICQMLVCTVDGDLYPP-LEEQTVSTDPKANKKKDKDRE 133

Query:   137 E 137
             +
Sbjct:   134 K 134

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0008024 "positive transcription elongation factor complex b" evidence=IEA

GO:0030520 "intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0035035 "histone acetyltransferase binding" evidence=IEA

GO:0035067 "negative regulation of histone acetylation" evidence=IEA

GO:0042809 "vitamin D receptor binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
cd08047	162	cd08047, TAF7, TATA Binding Protein (TBP) Associat	7e-54
pfam04658	157	pfam04658, TAFII55_N, TAFII55 protein conserved re	1e-47
COG5414	392	COG5414, COG5414, TATA-binding protein-associated	7e-15

>gnl|CDD|173966 cd08047, TAF7, TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

 Score =  169 bits (431), Expect = 7e-54
 Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 15/150 (10%)

Query: 20  EEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLP 79
           EEQFILR+PP VA+R+ + + E +S+E+  S+ L   ED R     I    +P  L+DLP
Sbjct: 1   EEQFILRLPPDVADRLRKAIEEGDSNEKLLSITLF--EDSRRAVVRINGQKYPAKLVDLP 58

Query: 80  CVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAV-------------EYRHGLTPPM 126
            ++ES KT D   L KTADI QM++V EP DS  +A              EY HGLTPPM
Sbjct: 59  TIIESHKTLDKKNLYKTADISQMLIVYEPDDSEKEAKEAKLDKKDKPKKFEYPHGLTPPM 118

Query: 127 RDARKRRFRREPDLNPELVQRVEKDLLNIM 156
           ++ RKRRFR+ P      ++ VEK++  ++
Sbjct: 119 KNVRKRRFRKTPSKKIAEIEEVEKEVKRLL 148

The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. Each TAF, with the help of a specific activator, is required only for expression of subset of genes and is not universally involved for transcription as are GTFs. TAF7 is involved in the regulation of the transition from PIC assembly to initiation and elongation. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. Length = 162

>gnl|CDD|218194 pfam04658, TAFII55_N, TAFII55 protein conserved region

 Score =  153 bits (390), Expect = 1e-47
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 25/156 (16%)

Query: 19  MEEQFILRVPP-SVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           +EEQFILR+PP   A+ +   +   + +     +   F +DGR     I    +   L+D
Sbjct: 1   IEEQFILRMPPDEDADFVRNAIESGDFTG----ISFKF-KDGRRAVVKINGVLYAAKLVD 55

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVREP-----------------GDSTPDAVEYRH 120
           LP ++ES KT+D   L KTADI QM++V EP                  +  P   EY H
Sbjct: 56  LPTIIESHKTFDRKNLYKTADICQMLLVYEPVSDEEEAKETPPESKKDNEKAPKKYEYPH 115

Query: 121 GLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIM 156
           G+TPP+++ RKRRFR+        ++ VEK++  ++
Sbjct: 116 GITPPLKNVRKRRFRKRVS--KREIEEVEKEVKRLL 149

The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits it acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminus of the protein. Length = 157

>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor [Transcription]

 Score = 72.0 bits (176), Expect = 7e-15
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 18  LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77
           L+E+QFILR+ PS+       L E   S +   + +   +D RS      N  +P  L+D
Sbjct: 71  LIEQQFILRLHPSIQIEHVVDLGE---SGDYSGITIKIKDD-RSAVVTHNNKKYPAILVD 126

Query: 78  LPCVVESFKTYDDCALVKTADIGQMIMVRE---PGDSTPDA-------VEYRHGLTPPMR 127
           LPC++ES K+ D     K ADI QM++  E     +S  +          Y HGL+PP++
Sbjct: 127 LPCIIESNKSMDSKQHYKVADISQMLVALEAVYHENSFLNKHLKKEREYYYLHGLSPPLK 186

Query: 128 DARKRRFRREPDLNP-ELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKD 186
             R RRFR++      E V++   DLL     A   +   +  ++    +  +   N K+
Sbjct: 187 YVRARRFRKKSSKIEIEEVEKKVDDLLEKDMKAESVSVVLKDEKELARQERVSSWENFKE 246

Query: 187 APSPQLKQPDIAEAGANTGAPARSDSDESD 216
            P   L +P + +              E D
Sbjct: 247 EPGEPLSRPALKKEKQGAEEEGEEGMSEED 276

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG4011	330	consensus Transcription initiation factor TFIID, s	100.0
PF04658	162	TAFII55_N: TAFII55 protein conserved region; Inter	100.0
cd08047	162	TAF7 TATA Binding Protein (TBP) Associated Factor	100.0
COG5414	392	TATA-binding protein-associated factor [Transcript	100.0

>KOG4011 consensus Transcription initiation factor TFIID, subunit TAF7 [Transcription]

Probab=100.00  E-value=6.9e-61  Score=432.85  Aligned_cols=189  Identities=39%  Similarity=0.608  Sum_probs=163.8

Q ss_pred             CCCCCCcccceeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeeccCCeeeeeeeecCCc
Q 027762           12 NKFNRALMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDC   91 (219)
Q Consensus        12 ~~~~~p~iEeQfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVDLPcIVEs~KT~D~k   91 (219)
                      ..+++|+||+||||||||+++.+++++++++.   .+.+|+|.|++|+|+|+|+|||+.|+|+|||||||||||||+|+|
T Consensus        15 ~~ed~~e~EsqfILRvPp~~~~~v~~~~~~~~---~~~~l~i~~~~D~R~~vV~i~n~~l~akLvDLPtVvEs~KT~D~k   91 (330)
T KOG4011|consen   15 EAEDDPEMESQFILRVPPDIACRVDRAASEDG---DKDELSIKLKPDGRHAVVRINNQLLPAKLVDLPTVVESNKTLDNK   91 (330)
T ss_pred             ccccchhhhhheeeecCHHHHHHHHHHhhccc---ccccceeeeccCCceeEEEECCEEccceeeccchhhhhhhccccc
Confidence            44888999999999999999999999988874   688999999999999999999999999999999999999999999


Q ss_pred             ceEEeccccceEEecCC-----CCCCC-----------CcccccCCCCcccchhhhccccCCCCCChHHHHHHHHHHHHH
Q 027762           92 ALVKTADIGQMIMVREP-----GDSTP-----------DAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNI  155 (219)
Q Consensus        92 ~~yKtaDIsQMLvV~~~-----~d~~p-----------~~~~~pHGLTPPmknVRkRRFRK~~~~~~~~Ie~VEkel~~L  155 (219)
                      +|||||||||||||+.+     .+..|           ..|.|||||||||||||||||||+.+.++-++.+||++|.+|
T Consensus        92 ~lyKtADIsQMLvc~~~~~e~ie~~~p~~~~k~~~~k~k~y~y~HGiTPPmKnvRkRRFRK~~~kk~~e~~eVEkevkrL  171 (330)
T KOG4011|consen   92 TLYKTADISQMLVCTEDVEEGIEDEDPDAARKKAKEKEKKYIYPHGITPPMKNVRKRRFRKTKKKKPMEVPEVEKEVKRL  171 (330)
T ss_pred             cceeecchheeEEEecCccccccccChhhHHHhhhhhhhceecccCCCcchhHHHHHHhhhccccCCCchHHHHHHHHHH
Confidence            99999999999999988     44555           579999999999999999999999876677999999999999


Q ss_pred             hc-CcCccccceeeecccccccccccccCCCCCCCCCCCCCCccccc---cCCCCCCCCCCcccCCCC
Q 027762          156 MT-GATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDIAEAG---ANTGAPARSDSDESDDSM  219 (219)
Q Consensus       156 L~-~~~ae~v~~e~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  219 (219)
                      |. +..|..|.|++|+..+-+...                ..+...+   -..++++||++-++||++
T Consensus       172 Lr~D~eA~Sv~~eiv~e~e~~~~~----------------~ei~~~~~~~~~~~~~~~~e~~~~dde~  223 (330)
T KOG4011|consen  172 LRADNEAVSVRWEIVDEDETSPDL----------------EEIEEQGNKPGDGAEEDRSESGDRDDEE  223 (330)
T ss_pred             HhhhhhhhhhheeeeccccCCcch----------------hhHHhhcCCCCCcccccccccccCcchh
Confidence            98 899999999999988642211                1111111   136778888888888864

>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex

Probab=100.00  E-value=4.2e-59  Score=390.05  Aligned_cols=141  Identities=41%  Similarity=0.726  Sum_probs=123.0

Q ss_pred             ccceeEEecCc-chHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeeccCCeeeeeeeecCCcceEEec
Q 027762           19 MEEQFILRVPP-SVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTA   97 (219)
Q Consensus        19 iEeQfILRlPp-~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVDLPcIVEs~KT~D~k~~yKta   97 (219)
                      ||+|||||||+ ++|++||++|++|.... ..+|+|+| .|+|+|+|+|+|+.|+|+|||||||||||||+|+++|||||
T Consensus         1 ~E~q~ILR~p~~~~ad~lr~~i~~~~~~~-~~~I~~~~-~d~R~~~v~i~~~~y~a~LvDLP~IvEs~KT~D~k~~yKta   78 (162)
T PF04658_consen    1 IEEQFILRLPPGEDADRLREAIEEGDINE-KLDIDFKF-KDGRRAVVRIGGQIYSAKLVDLPCIVESHKTLDKKNFYKTA   78 (162)
T ss_pred             CcceEEEecCChhHHHHHHHHHHcCCCCC-CceEEEec-CCCCEEEEEECCEEcceEEeecCceeeEEeecccCeEEEEe
Confidence            79999999999 89999999999997532 12445555 69999999999999999999999999999999999999999


Q ss_pred             cccceEEecCCCC------------------CCCCcccccCCCCcccchhhhccccCCCCCChHHHHHHHHHHHHHhc-C
Q 027762           98 DIGQMIMVREPGD------------------STPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMT-G  158 (219)
Q Consensus        98 DIsQMLvV~~~~d------------------~~p~~~~~pHGLTPPmknVRkRRFRK~~~~~~~~Ie~VEkel~~LL~-~  158 (219)
                      ||||||||+++..                  ..+..|+|||||||||||||||||||+... ..+|++||+||.+||+ |
T Consensus        79 DI~QMLiv~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~hGiTPP~knvrkRRFRk~~~~-~~~i~~vE~ev~~LL~~D  157 (162)
T PF04658_consen   79 DISQMLIVYEPIEDEEEAKETDLKEKKKNKEKEDKKFEWPHGITPPMKNVRKRRFRKRKKK-YREIPEVEKEVKRLLRED  157 (162)
T ss_pred             ccceeEEEeccCCCcccccccccccccccccccccccCCCCCCChhhhhHHHhhhccCccc-cccHHHHHHHHHHHHhcc
Confidence            9999999998721                  124578999999999999999999999653 5999999999999998 4


Q ss_pred             cCcc
Q 027762          159 ATVE  162 (219)
Q Consensus       159 ~~ae  162 (219)
                      ..|+
T Consensus       158 ~~A~  161 (162)
T PF04658_consen  158 AEAV  161 (162)
T ss_pred             hhhc
Confidence            5443

TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex

>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=100.00  E-value=1.6e-57  Score=378.71  Aligned_cols=148  Identities=44%  Similarity=0.757  Sum_probs=130.3

Q ss_pred             cceeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeeccCCeeeeeeeecCCcceEEeccc
Q 027762           20 EEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADI   99 (219)
Q Consensus        20 EeQfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVDLPcIVEs~KT~D~k~~yKtaDI   99 (219)
                      |+||||||||++|++||++|++|..+..  .+.+.+..|+|+|+|+|+|+.|+|+|||||||||||||||+++|||||||
T Consensus         1 E~q~ILR~p~~~a~~vr~~i~~~~~~~~--~~~~~~~~d~R~~~v~v~~~~y~a~LvdLPtiiEs~KT~D~k~~yKtaDI   78 (162)
T cd08047           1 EEQFILRLPPDVADRLRKAIEEGDSNEK--LLSITLFEDSRRAVVRINGQKYPAKLVDLPTIIESHKTLDKKNLYKTADI   78 (162)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHcCCCccc--ccccccCCCCcEEEEEECCEEcceEEeecCceeeeeeccccCceEEecCh
Confidence            7999999999999999999999964321  13455667999999999999999999999999999999999999999999


Q ss_pred             cceEEecCCCCCC-------------CCcccccCCCCcccchhhhccccCCCCCChHHHHHHHHHHHHHhc-CcCccccc
Q 027762          100 GQMIMVREPGDST-------------PDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMT-GATVENAD  165 (219)
Q Consensus       100 sQMLvV~~~~d~~-------------p~~~~~pHGLTPPmknVRkRRFRK~~~~~~~~Ie~VEkel~~LL~-~~~ae~v~  165 (219)
                      ||||+|+++.+..             +..|+|||||||||+|||+|||||+......++++||++|.+||+ +..|..+.
T Consensus        79 ~QMliv~~~~~~~~~~~~~~~~~~~~~~~~~~~hGLTPP~~~vrkRrfrk~~~~~~~~i~~vEkev~~ll~~d~~a~~~~  158 (162)
T cd08047          79 SQMLIVYEPDDSEKEAKEAKLDKKDKPKKFEYPHGLTPPMKNVRKRRFRKTPSKKIAEIEEVEKEVKRLLKEDTEAVSVE  158 (162)
T ss_pred             hhEEEEecCCCchhhhhhccccccccccccccCCCCCcCchhhhhcccccccccccchHHHHHHHHHHHHHhhhhhccee
Confidence            9999999886531             467899999999999999999999976666679999999999998 57777777


Q ss_pred             eeee
Q 027762          166 PEVN  169 (219)
Q Consensus       166 ~e~v  169 (219)
                      +|++
T Consensus       159 ~e~~  162 (162)
T cd08047         159 YEVI  162 (162)
T ss_pred             eeeC
Confidence            7763

The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving

>COG5414 TATA-binding protein-associated factor [Transcription]

Probab=100.00  E-value=3.7e-47  Score=343.62  Aligned_cols=162  Identities=30%  Similarity=0.499  Sum_probs=144.4

Q ss_pred             CCCCCCCcccceeEEecCcch-HHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeeccCCeeeeeeeecC
Q 027762           11 GNKFNRALMEEQFILRVPPSV-AERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYD   89 (219)
Q Consensus        11 ~~~~~~p~iEeQfILRlPp~~-A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVDLPcIVEs~KT~D   89 (219)
                      +.-++||+||+|||||+||++ +++|++++.+|    .+.+|+|+|+ |.|+++|++||+.|+|+||||||||||.||+|
T Consensus        64 SD~EdD~~iE~q~ILRl~p~~~~e~V~~~~esG----~~s~I~ik~k-d~R~aVvt~N~~~Y~ailVdLPciIEsnKS~D  138 (392)
T COG5414          64 SDIEDDPLIEQQFILRLHPSIQIEHVVDLGESG----DYSGITIKIK-DDRSAVVTHNNKKYPAILVDLPCIIESNKSMD  138 (392)
T ss_pred             ccccccchhhhceeeecCCccchHHHHHHhhcC----CccCceEEec-cCceEEEEECCcccceeEeecceeEecccccc
Confidence            445789999999999999985 89999999997    5778999999 89999999999999999999999999999999


Q ss_pred             CcceEEeccccceEE----ecCCCCCC------CCcccccCCCCcccchhhhccccCCCCCChHHHHHHHHHHHHHhc-C
Q 027762           90 DCALVKTADIGQMIM----VREPGDST------PDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMT-G  158 (219)
Q Consensus        90 ~k~~yKtaDIsQMLv----V~~~~d~~------p~~~~~pHGLTPPmknVRkRRFRK~~~~~~~~Ie~VEkel~~LL~-~  158 (219)
                      +|++||+||||||||    |+.+....      ...|.|+|||||||+|||.|||||+  .++.+|+.||++|.+||+ +
T Consensus       139 ~k~~~K~aDisqmlvA~E~v~hensflN~~lk~~~~y~y~hGlspPl~~Vr~rRFRkk--~s~~eIe~VEk~Vd~LL~~D  216 (392)
T COG5414         139 SKQHYKVADISQMLVALEAVYHENSFLNKHLKKEREYYYLHGLSPPLKYVRARRFRKK--SSKIEIEEVEKKVDDLLEKD  216 (392)
T ss_pred             hhhhHhHhhHHHHHHHHhhhcccchhhHHHHHHHhhhhccccCCchhHHHHHHHHHhh--cCcchHHHHHHHHHHHHHHh
Confidence            999999999999999    44432222      1268999999999999999999999  778889999999999998 8


Q ss_pred             cCccccceeeecccc----cccccc
Q 027762          159 ATVENADPEVNEQEE----EGDGNA  179 (219)
Q Consensus       159 ~~ae~v~~e~v~~~e----~~~~~~  179 (219)
                      ..|+.|.++++++.+    +-.++|
T Consensus       217 ~~Aesvs~~l~d~~elAR~~~vs~~  241 (392)
T COG5414         217 MKAESVSVVLKDEKELARQERVSSW  241 (392)
T ss_pred             hhhhhhHHHHHhHHHHhhhhhhhhh
Confidence            999999999999987    345555

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00