Citrus Sinensis ID: 027770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAVHLL
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHccccEEEEEEHHHHcccccHHHHHcccEEHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHccccccccccccEEEEEccccccccEEEEccccEEEEccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccEEcHHHHHEEEEcccHHHHHcccEccHHHHHHHHHHHHHccEEEEEEEcccHcHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWrmfrspgapqrrqpkrqapstsnsvgstqanatstpfgasssseDLRTQIADAlfqpvkptlGQVVRQKLSEGRKVTCRLLGVIleescpeelQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAgvftsgglvkdkVLFCSteigrtsfvrqlepdwhidtnpEIVSQLAVHLL
Flexible Loop (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSpgapqrrqpkrqapstsnsvgstqanatstpfgasssSEDLRTQIADAlfqpvkptlgqvvrqklsegrkVTCRLLGVIleescpeelqkqVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETagvftsgglvkDKVLFCSTEIGRTSFVrqlepdwhidtnpeiVSQLAVHLL
Low Complexity Region (SEG)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAVHLL
Disordered region (IsUnstruct)
*FWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMF**********************************************IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLA****
Disordered Region (DISOPRED)
**WVLTLLSWYQDSRSVGAIAGLALAIVFTW***********************************************************************EGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAVHLL
Disordered Region (DISEMBL)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSP***************************************LRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAVHLL
Disordered Region (DISPRO)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRS******************************************TQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAV***
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFWVLTLLSWYQDSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIVSQLAVHLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9LSX7	283	Peroxisome biogenesis pro	yes	no	0.926	0.717	0.674	2e-73

>sp|Q9LSX7|PEX22_ARATH Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 165/209 (78%), Gaps = 6/209 (2%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATS------T 66
           DSRS+GAIAGLA+A++FTWR  R+PG  ++R+  ++    + +  +  A + S       
Sbjct: 41  DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100

Query: 67  PFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
           P  +S   ++    + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct: 101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160

Query: 127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
           Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct: 161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220

Query: 187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLA 215
           TEIGRTSFVRQLEPDWHIDTNPEI +QLA
Sbjct: 221 TEIGRTSFVRQLEPDWHIDTNPEISTQLA 249

May tethered PEX4 to the peroxisome membrane and may be involved in a late step of the matrix protein import. Does not play a role in the biogenesis of the peroxisomal membrane.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255549355	279	conserved hypothetical protein [Ricinus	0.949	0.745	0.819	3e-93
224132998	273	predicted protein [Populus trichocarpa]	0.926	0.743	0.795	1e-87
388498658	264	unknown [Lotus japonicus]	0.926	0.768	0.774	1e-86
118481139	275	unknown [Populus trichocarpa]	0.926	0.738	0.787	6e-86
225447340	275	PREDICTED: peroxisome biogenesis protein	0.926	0.738	0.795	5e-85
356550004	280	PREDICTED: peroxisome biogenesis protein	0.926	0.725	0.766	1e-84
356543742	278	PREDICTED: peroxisome biogenesis protein	0.926	0.730	0.759	2e-84
449468331	276	PREDICTED: peroxisome biogenesis protein	0.926	0.735	0.752	4e-83
217074268	275	unknown [Medicago truncatula]	0.926	0.738	0.745	9e-82
357453503	275	hypothetical protein MTR_2g088850 [Medic	0.926	0.738	0.745	1e-81

>gi|255549355|ref|XP_002515731.1| conserved hypothetical protein [Ricinus communis] gi|223545168|gb|EEF46678.1| conserved hypothetical protein [Ricinus communis]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 172/210 (81%), Positives = 186/210 (88%), Gaps = 2/210 (0%)

Query: 8   LSWYQ-DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATST 66
           +S+Y  DSRSVGAIAGLA+AIVFTWRM RSPG PQRRQPKRQAP++S SV + Q+N+T  
Sbjct: 36  ISFYNLDSRSVGAIAGLAVAIVFTWRMLRSPGGPQRRQPKRQAPTSSTSVVTPQSNSTLM 95

Query: 67  PFGASSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ 125
           P G  SSSEDLR Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ
Sbjct: 96  PSGVCSSSEDLRAQNVVDNFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESTPEELQ 155

Query: 126 KQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFC 185
            Q TVKSSVLE LLEITKFCDLYLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFC
Sbjct: 156 TQATVKSSVLEVLLEITKFCDLYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFC 215

Query: 186 STEIGRTSFVRQLEPDWHIDTNPEIVSQLA 215
           STE GR+SFVRQLEPDWHIDTNPEIVSQL+
Sbjct: 216 STENGRSSFVRQLEPDWHIDTNPEIVSQLS 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132998|ref|XP_002327932.1| predicted protein [Populus trichocarpa] gi|222837341|gb|EEE75720.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/205 (79%), Positives = 178/205 (86%), Gaps = 2/205 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGA-S 71
           DSRSVGA+AGLA+AIVFTWR  RS   PQRRQPKRQAP+TS+SV +TQ NA S P G   
Sbjct: 35  DSRSVGAVAGLAVAIVFTWRWLRSNSGPQRRQPKRQAPTTSSSVVTTQPNAVSIPSGGVC 94

Query: 72  SSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTV 130
           SSSEDLR Q + D  FQ VKP+LGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ Q TV
Sbjct: 95  SSSEDLRVQNVVDEFFQTVKPSLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQSQATV 154

Query: 131 KSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIG 190
           +SSVLE LLEITKFCD+YLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFCSTE G
Sbjct: 155 RSSVLEVLLEITKFCDVYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFCSTETG 214

Query: 191 RTSFVRQLEPDWHIDTNPEIVSQLA 215
           R+SFVRQLEPDWHIDTNPE++ QLA
Sbjct: 215 RSSFVRQLEPDWHIDTNPEVIFQLA 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498658|gb|AFK37395.1| unknown [Lotus japonicus]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 177/204 (86%), Gaps = 1/204 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           DS S+GA+AGLA+AI FTWR+ RSPG PQ RQ KRQ  ++SN   ST +NA+  P G  S
Sbjct: 27  DSHSIGAVAGLAIAIFFTWRLLRSPGEPQPRQRKRQTTTSSNPGVSTHSNASVVPSGVRS 86

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S D R Q + D LFQPVKPTLGQ+VRQKL+EGRKVTCRLLGVILEE+ PEELQKQVTVK
Sbjct: 87  PSGDSRAQNVVDELFQPVKPTLGQIVRQKLNEGRKVTCRLLGVILEETSPEELQKQVTVK 146

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           S+VLE LLEITKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLFCSTEIGR
Sbjct: 147 STVLEVLLEITKFCDLYLMERVLDDESEKRVLVALEDAGVFTSGGLVKDKVLFCSTEIGR 206

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLA 215
           +SFVRQLEPDWHID+NPEI+SQLA
Sbjct: 207 SSFVRQLEPDWHIDSNPEIISQLA 230

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481139|gb|ABK92522.1| unknown [Populus trichocarpa]

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 178/207 (85%), Gaps = 4/207 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGA-S 71
           DSRSVGA+AGLA+AIVFTWR  RS   PQRRQPKRQAP+TS+SV +TQ NA S P G   
Sbjct: 35  DSRSVGAVAGLAVAIVFTWRWLRSNSGPQRRQPKRQAPTTSSSVVTTQPNAVSIPSGGVC 94

Query: 72  SSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ--KQV 128
           SSSEDLR Q + D  FQ VKP+LGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ   Q 
Sbjct: 95  SSSEDLRVQNVVDEFFQTVKPSLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQGQSQA 154

Query: 129 TVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTE 188
           TV+SSVLE LLEITKFCD+YLMERVLD+ESE+KVL ALE AGVFTSGGLVKDKVLFCSTE
Sbjct: 155 TVRSSVLEVLLEITKFCDVYLMERVLDDESEQKVLAALENAGVFTSGGLVKDKVLFCSTE 214

Query: 189 IGRTSFVRQLEPDWHIDTNPEIVSQLA 215
            GR+SFVRQLEPDWHIDTNPE++ QLA
Sbjct: 215 TGRSSFVRQLEPDWHIDTNPEVIFQLA 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447340|ref|XP_002280526.1| PREDICTED: peroxisome biogenesis protein 22 [Vitis vinifera] gi|297739312|emb|CBI28963.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 163/205 (79%), Positives = 179/205 (87%), Gaps = 2/205 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           DSRSVGA+AG A+A++FTWR+ RSP  PQRRQPKRQAP+ S+S  S+Q+  T  P G  S
Sbjct: 37  DSRSVGALAGFAVAMIFTWRLLRSPSGPQRRQPKRQAPAPSSSGVSSQSTTTLAPSGVCS 96

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQ-KQVTV 130
           SSED R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ KQ TV
Sbjct: 97  SSEDSRAQNVIDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQAKQATV 156

Query: 131 KSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIG 190
           +SSVLE LLEITKFCDLYLMERVLD+ESE+KVLLALE AGVFTSGGLVKDKVLFCSTE G
Sbjct: 157 RSSVLEVLLEITKFCDLYLMERVLDDESERKVLLALEDAGVFTSGGLVKDKVLFCSTETG 216

Query: 191 RTSFVRQLEPDWHIDTNPEIVSQLA 215
           R+SFVRQLEPDWHIDTNPE+VSQLA
Sbjct: 217 RSSFVRQLEPDWHIDTNPEVVSQLA 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550004|ref|XP_003543380.1| PREDICTED: peroxisome biogenesis protein 22-like [Glycine max]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/206 (76%), Positives = 178/206 (86%), Gaps = 3/206 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSN-SVG-STQANATSTPFGA 70
           D RS+GA+AGLA+AIVFTWR+ RSP   QRRQ KRQ PS+SN  VG ++ +NA+  P  A
Sbjct: 41  DLRSIGAVAGLAVAIVFTWRLLRSPSGSQRRQQKRQGPSSSNPGVGTNSNSNASVVPSDA 100

Query: 71  SSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVT 129
            S S+D R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQKQ T
Sbjct: 101 CSPSDDSRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQKQAT 160

Query: 130 VKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEI 189
           V+SSVLE LLE+TKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLFCSTE 
Sbjct: 161 VRSSVLEVLLEVTKFCDLYLMERVLDDESEKRVLVALEEAGVFTSGGLVKDKVLFCSTEN 220

Query: 190 GRTSFVRQLEPDWHIDTNPEIVSQLA 215
           GR+SFVRQLEPDWHID+NPEIV+QLA
Sbjct: 221 GRSSFVRQLEPDWHIDSNPEIVTQLA 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543742|ref|XP_003540319.1| PREDICTED: peroxisome biogenesis protein 22-like [Glycine max]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/204 (75%), Positives = 174/204 (85%), Gaps = 1/204 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           D RS+GA+AGLA+AIVFTWR+ RSP   QRRQ KRQ PS+SN   +T +N +  P  A S
Sbjct: 41  DIRSIGAVAGLAVAIVFTWRLLRSPSGSQRRQQKRQGPSSSNPGVTTHSNVSDVPSDACS 100

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S+D R Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQKQ TV+
Sbjct: 101 PSDDSRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQKQATVR 160

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           SSVLE LLE+TKFCDLYLMERVLD+ESEK+VL+ALE AGVFTSG LVKDKVLFCSTE GR
Sbjct: 161 SSVLEVLLEVTKFCDLYLMERVLDDESEKRVLVALEEAGVFTSGRLVKDKVLFCSTENGR 220

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLA 215
           +SFVRQLEPDWHID+NPEIV+QLA
Sbjct: 221 SSFVRQLEPDWHIDSNPEIVTQLA 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468331|ref|XP_004151875.1| PREDICTED: peroxisome biogenesis protein 22-like [Cucumis sativus] gi|449484063|ref|XP_004156773.1| PREDICTED: peroxisome biogenesis protein 22-like [Cucumis sativus]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 170/206 (82%), Gaps = 3/206 (1%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQ--APSTSNSVGSTQANATSTPFGA 70
           DSRSVGAIAG A+AI+FTWR+ RS    QR+QPKRQ  APS+S S      N  S P G 
Sbjct: 37  DSRSVGAIAGFAVAIIFTWRLLRSSNGHQRQQPKRQMPAPSSSASNAGLNTNEQSIPSGV 96

Query: 71  SSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVT 129
            S SEDLR   + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLG+ILEE  PE+LQKQ T
Sbjct: 97  CSPSEDLRAHNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGIILEEYSPEDLQKQAT 156

Query: 130 VKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEI 189
           V+SSVLE LLEITK+CDLYLME VLD+ESEKKVL ALE AGVFTSGGLVKDKVLFCSTE 
Sbjct: 157 VRSSVLEVLLEITKYCDLYLMETVLDDESEKKVLSALEDAGVFTSGGLVKDKVLFCSTEN 216

Query: 190 GRTSFVRQLEPDWHIDTNPEIVSQLA 215
           GRTSFVRQLEPDWHID+NPEI++QLA
Sbjct: 217 GRTSFVRQLEPDWHIDSNPEIITQLA 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074268|gb|ACJ85494.1| unknown [Medicago truncatula]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 1/204 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           D R++GA+AGLA+AIVFTWR+ RSP   Q RQ KRQ  ++SN   ST +NA+  P  AS 
Sbjct: 38  DIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQRKRQGGASSNPGASTNSNASVVPSDASL 97

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S++LR Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ + TV+
Sbjct: 98  PSDELRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQTKATVR 157

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           SSVLE LLEITKFCDLYLM+RVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLF STE GR
Sbjct: 158 SSVLEVLLEITKFCDLYLMDRVLDDESEKRVLVALEEAGVFTSGGLVKDKVLFSSTENGR 217

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLA 215
           +SFVRQLEPDWHIDTNPEIV+QLA
Sbjct: 218 SSFVRQLEPDWHIDTNPEIVTQLA 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453503|ref|XP_003597029.1| hypothetical protein MTR_2g088850 [Medicago truncatula] gi|355486077|gb|AES67280.1| hypothetical protein MTR_2g088850 [Medicago truncatula] gi|388510392|gb|AFK43262.1| unknown [Medicago truncatula]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 1/204 (0%)

Query: 13  DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATSTPFGASS 72
           D R++GA+AGLA+AIVFTWR+ RSP   Q RQ KRQ  ++SN   ST +NA+  P  AS 
Sbjct: 38  DIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQRKRQGGASSNPGASTNSNASVVPSDASL 97

Query: 73  SSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVK 131
            S++LR Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEES PEELQ + TV+
Sbjct: 98  PSDELRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQTKATVR 157

Query: 132 SSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGR 191
           SSVLE LLEITKFCDLYLM+RVLD+ESEK+VL+ALE AGVFTSGGLVKDKVLF STE GR
Sbjct: 158 SSVLEVLLEITKFCDLYLMDRVLDDESEKRVLVALEEAGVFTSGGLVKDKVLFSSTENGR 217

Query: 192 TSFVRQLEPDWHIDTNPEIVSQLA 215
           +SFVRQLEPDWHIDTNPEIV+QLA
Sbjct: 218 SSFVRQLEPDWHIDTNPEIVTQLA 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2093029	283	PEX22 "peroxin 22" [Arabidopsi	0.926	0.717	0.736	1.7e-73
GENEDB_PFALCIPARUM|PF11_0487	217	PF11_0487 "hypothetical protei	0.557	0.562	0.211	1.2e-06
UNIPROTKB|Q8IHP2	217	PF11_0487 "Conserved Plasmodiu	0.557	0.562	0.211	1.2e-06

TAIR|locus:2093029 PEX22 "peroxin 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 154/209 (73%), Positives = 174/209 (83%)

Query:    13 DSRSVGAIAGLALAIVFTWRMFRSPGAP-QRRQPKRQ---APSTSNSVGSTQAN-ATSTP 67
             DSRS+GAIAGLA+A++FTWR  R+PG   QRRQPKR+   A ++S +  ++Q+N A+S  
Sbjct:    41 DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100

Query:    68 FGASSSSEDLRTQ-IADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
                SS  ED   Q + D  FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct:   101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160

Query:   127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
             Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct:   161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220

Query:   187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLA 215
             TEIGRTSFVRQLEPDWHIDTNPEI +QLA
Sbjct:   221 TEIGRTSFVRQLEPDWHIDTNPEISTQLA 249

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0007031 "peroxisome organization" evidence=IMP

GENEDB_PFALCIPARUM|PF11_0487 PF11_0487 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 26/123 (21%), Positives = 66/123 (53%)

Query:    92 TLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLME 151
             T  +  R+K+++    +  ++ + L +   + +     +  + +E L +++   +L+++ 
Sbjct:    53 TSNESYRRKMNKKNISSKPVISLCLNDIVIKIIGNNAHIMENSVEPLNKLSSISELFVIA 112

Query:   152 RVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIV 211
             ++ ++  EK ++   +  G+F  G L + +++FC+T  GR S +RQL P  H+D +  ++
Sbjct:   113 QISNDVQEKNIIDLFKKLGLFDKG-LKEHRLMFCNTSNGRASMIRQLSPLTHVDNDETVI 171

Query:   212 SQL 214
               L
Sbjct:   172 KTL 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IHP2 PF11_0487 "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 26/123 (21%), Positives = 66/123 (53%)

Query:    92 TLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLME 151
             T  +  R+K+++    +  ++ + L +   + +     +  + +E L +++   +L+++ 
Sbjct:    53 TSNESYRRKMNKKNISSKPVISLCLNDIVIKIIGNNAHIMENSVEPLNKLSSISELFVIA 112

Query:   152 RVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDTNPEIV 211
             ++ ++  EK ++   +  G+F  G L + +++FC+T  GR S +RQL P  H+D +  ++
Sbjct:   113 QISNDVQEKNIIDLFKKLGLFDKG-LKEHRLMFCNTSNGRASMIRQLSPLTHVDNDETVI 171

Query:   212 SQL 214
               L
Sbjct:   172 KTL 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      219       219   0.00092  112 3  11 22  0.38    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.44u 0.07s 23.51t   Elapsed:  00:00:02
  Total cpu time:  23.44u 0.07s 23.51t   Elapsed:  00:00:02
  Start:  Sat May 11 08:42:52 2013   End:  Sat May 11 08:42:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSX7	PEX22_ARATH	No assigned EC number	0.6746	0.9269	0.7173	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PF12827	117	Peroxin-22: Peroxisomal biogenesis protein family;	92.71
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	87.97
cd08556	189	GDPD Glycerophosphodiester phosphodiesterase domai	82.85

>PF12827 Peroxin-22: Peroxisomal biogenesis protein family; InterPro: IPR024359 Peroxin-22 is an integral peroxisomal membrane protein

Probab=92.71  E-value=0.021  Score=46.28  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             cceEEeeecCcCccceeeecccceeecCCHH----HHHhhhhcc
Q 027770          179 KDKVLFCSTEIGRTSFVRQLEPDWHIDTNPE----IVSQLAVHL  218 (219)
Q Consensus       179 rHKVLFCST~~Gr~sfVRQLeP~lHIDtd~~----vv~~L~rfv  218 (219)
                      .|||+-|+|.+|+-|-||||.|+.-+=...+    +=++|.||+
T Consensus        68 ~~KiI~Cdt~~G~~~~vK~Lk~d~llv~~ddl~~~ip~Di~rfv  111 (117)
T PF12827_consen   68 NYKIIKCDTMQGYWSCVKHLKPDQLLVCSDDLGISIPEDINRFV  111 (117)
T ss_dssp             GGGEEEESSHHHHHHHHHHH--SEEEE-GGGT-SSS-GGGGGT-
T ss_pred             ceeEEEecchhhHHHHHHhcCCCceEEehhhccccCHHHHHHHH
Confidence            4999999999999999999999988742222    334677776

The N terminus of peroxin-22 is located in the matrix, while the C terminus is located in the cytosol. Peroxin-22 interacts with the ubiquitin-conjugating enzyme Pex4p, anchoring it at the peroxisomal membrane. Both proteins may act at the same step in peroxisome biogenesis [].; PDB: 2Y9O_B 2Y9M_B 2Y9P_B.

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=87.97  E-value=2  Score=37.37  Aligned_cols=74  Identities=23%  Similarity=0.364  Sum_probs=57.1

Q ss_pred             cceeehhHHHHHHHHhhcCceEEEEEee--chhhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770          127 QVTVKSSVLEALLEITKFCDLYLMERVL--DNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI  204 (219)
Q Consensus       127 ~a~v~esalevLleLsk~~DlYLm~~V~--dD~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI  204 (219)
                      +..++|-+-+++-||++.+|||+.+.-.  -+.=|++--.++|..     .-|...+++||    |+-.+|   +.++-|
T Consensus        66 nL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~F-----PFi~~qn~vfC----gnKniv---kaDilI  133 (180)
T COG4502          66 NLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKF-----PFISYQNIVFC----GNKNIV---KADILI  133 (180)
T ss_pred             hcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHC-----CCCChhhEEEe----cCCCeE---EeeEEe
Confidence            6788999999999999999999987663  344466777777873     36667999999    444444   568899


Q ss_pred             cCCHHHHH
Q 027770          205 DTNPEIVS  212 (219)
Q Consensus       205 Dtd~~vv~  212 (219)
                      |.++-.++
T Consensus       134 DDnp~nLE  141 (180)
T COG4502         134 DDNPLNLE  141 (180)
T ss_pred             cCCchhhh
Confidence            98887655

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

Probab=82.85  E-value=2.2  Score=33.75  Aligned_cols=64  Identities=20%  Similarity=0.217  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHhhcCceEEEEEeech----hhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770          132 SSVLEALLEITKFCDLYLMERVLDN----ESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI  204 (219)
Q Consensus       132 esalevLleLsk~~DlYLm~~V~dD----~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI  204 (219)
                      +.--|+|-.+ +- +++++.-++++    .-.+.+++++++.|       ..++|+|||........+|++.|.+.+
T Consensus        49 ~tL~e~l~~~-~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~-------~~~~v~i~s~~~~~l~~~~~~~p~~~~  116 (189)
T cd08556          49 PTLEEVLELV-KG-GVGLNIELKEPTRYPGLEAKVAELLREYG-------LEERVVVSSFDHEALRALKELDPEVPT  116 (189)
T ss_pred             CCHHHHHHhc-cc-CcEEEEEECCCCCchhHHHHHHHHHHHcC-------CcCCEEEEeCCHHHHHHHHHhCCCCcE
Confidence            3444444333 33 89999999997    35688999999966       237999999988888888888887655

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
2y9m_B	130	Peroxisome assembly protein 22; ligase-transport p	92.25
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.22
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	81.31

>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B

Probab=92.25  E-value=0.016  Score=47.13  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=25.7

Q ss_pred             ccceEEeeecCcCccceeeecccceee
Q 027770          178 VKDKVLFCSTEIGRTSFVRQLEPDWHI  204 (219)
Q Consensus       178 ~rHKVLFCST~~Gr~sfVRQLeP~lHI  204 (219)
                      +.||||.|+|.+|+-+.+|+|+|+..+
T Consensus        61 ~nyKIi~Csn~qG~ws~vK~Lkk~~LL   87 (130)
T 2y9m_B           61 NEHKIIYCDSMDGLWSCVRRLGKFQCI   87 (130)
T ss_dssp             CGGGEEEESCHHHHHHHHHHHCCSEEE
T ss_pred             CcceEEEeccHHHHHHHHHhcCCceEE
Confidence            559999999999999999999999988

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.22  E-value=1.5  Score=29.50  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC
Q 027770           16 SVGAIAGLALAIVFTWRMFRS   36 (219)
Q Consensus        16 s~~~~ag~a~a~v~~w~~lr~   36 (219)
                      =+|+++++++.....|.++|.
T Consensus        16 VVgGv~~v~ii~~~~~~~~RR   36 (44)
T 2l2t_A           16 VIGGLFILVIVGLTFAVYVRR   36 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHHHHhhh
Confidence            367778887777777888885

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=81.31  E-value=1.6  Score=29.18  Aligned_cols=21  Identities=24%  Similarity=0.154  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcC
Q 027770           16 SVGAIAGLALAIVFTWRMFRS   36 (219)
Q Consensus        16 s~~~~ag~a~a~v~~w~~lr~   36 (219)
                      =+|+++++++.+...|.++|-
T Consensus        17 VVgGv~~~~ii~~~~~~~~RR   37 (44)
T 2ks1_B           17 MVGALLLLLVVALGIGLFMRR   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHhhh
Confidence            467788888877777888884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00